Percora_a	ANCESTRAL SPECIES	5	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153	ENSGT00910000144296	ENSGT00940000156851 #8	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #13	ENSGT00390000001859 #14	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #31	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a #33	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37
Bovidae	ANCESTRAL SPECIES	8	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153	ENSGT00910000144296	ENSGT00940000156851 #8	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #13	ENSGT00390000001859 #14	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #31	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a #33	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37
Caprinae	ANCESTRAL SPECIES	5	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153	ENSGT00940000156851 #8	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT01010000228762 #9	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #13	ENSGT00390000001859 #14	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #31	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a #33	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020001367 #7	CHRNA1 (ENSOARG00020001273) #8	ENSOARG00020001229 #9	ENSOARG00020001216 #10	CHN1 (ENSOARG00020000831) #11	ATF2 (ENSOARG00020000583) #12	ATP5MC3 (ENSOARG00020000538) #13	LNPK (ENSOARG00020000416) #14	ENSOARG00020000394 #15	EVX2 (ENSOARG00020000381) #16	HOXD13 (ENSOARG00020000373) #17	HOXD12 (ENSOARG00020000357) #18	hoxd11 (ENSOARG00020000346) #19	HOXD10 (ENSOARG00020000330) #20	HOXD9 (ENSOARG00020000321) #21	HOXD8 (ENSOARG00020000297) #22	HOXD4 (ENSOARG00020000275) #23	HOXD3 (ENSOARG00020000257) #24	HOXD1 (ENSOARG00020000237) #25	MTX2 (ENSOARG00020000188) #26	HNRNPA3 (ENSOARG00020000123) #27	NFE2L2 (ENSOARG00020022726) #28	AGPS (ENSOARG00020022410) #29	ENSOARG00020022373 #30	ENSOARG00020022364 #31	PDE11A (ENSOARG00020022115) #32	ENSOARG00020022078 #33	RBM45 (ENSOARG00020022028) #34	OSBPL6 (ENSOARG00020020986) #35	PRKRA (ENSOARG00020020855) #36	PJVK (ENSOARG00020020753) #37
Goat	MODERN SPECIES	11	ENSCHIG00000009043 #7	CHRNA1 (ENSCHIG00000018272) #8	CHN1 (ENSCHIG00000017514) #11	ENSCHIG00000012635	ATF2 (ENSCHIG00000011446) #12	ENSCHIG00000018041 #13	LNPK (ENSCHIG00000012313) #14	ENSCHIG00000025787	ENSCHIG00000004992 #15	EVX2 (ENSCHIG00000026644) #16	HOXD13 (ENSCHIG00000009994) #17	HOXD12 (ENSCHIG00000014734) #18	HOXD11 (ENSCHIG00000026087) #19	HOXD10 (ENSCHIG00000011771) #20	HOXD9 (ENSCHIG00000023245) #21	HOXD8 (ENSCHIG00000013371) #22	HOXD4 (ENSCHIG00000019702) #23	HOXD3 (ENSCHIG00000011624) #24	HOXD1 (ENSCHIG00000017515) #25	MTX2 (ENSCHIG00000008892) #26	ENSCHIG00000015430 #27	NFE2L2 (ENSCHIG00000026055) #28	AGPS (ENSCHIG00000015256) #29	ENSCHIG00000011750 #30	ENSCHIG00000011716 #31	PDE11A (ENSCHIG00000016852) #32	ENSCHIG00000026156 #33	RBM45 (ENSCHIG00000010687) #34	ENSCHIG00000017164	OSBPL6 (ENSCHIG00000008898) #35	PRKRA (ENSCHIG00000015333) #36
Bovinae	ANCESTRAL SPECIES	5	ENSGT00390000013474.a	ENSGT00390000004153	ENSGT00910000144296	ENSGT00940000156851 #8	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #13	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #14	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #31	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a #33	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36
Bos	ANCESTRAL SPECIES	6	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153	ENSGT00940000156851 #8	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #13	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #14	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #27	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #31	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a #33	ENSGT00680000100059 #34
Bos_a	ANCESTRAL SPECIES	4	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153	ENSGT00940000156851 #8	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #13	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #14	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #31	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a #33	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36
Wild yak	MODERN SPECIES	2654										LNPK (ENSBMUG00000015713) #14	ENSBMUG00000015669 #15	ENSBMUG00000015650	HOXD13 (ENSBMUG00000015639) #17	HOXD12 (ENSBMUG00000015618) #18	HOXD10 (ENSBMUG00000015601) #20	ENSBMUG00000015587 #22	HOXD3 (ENSBMUG00000015572) #24	ENSBMUG00000015556
Domestic yak	MODERN SPECIES	11	GPR155 (ENSBGRG00000014360)	ENSBGRG00000014674	ENSBGRG00000014699 #7	CHRNA1 (ENSBGRG00000014839) #8	CHN1 (ENSBGRG00000015101) #11	ATF2 (ENSBGRG00000015648) #12	ATP5MC3 (ENSBGRG00000016024) #13	ENSBGRG00000016132	LNPK (ENSBGRG00000016182) #14	EVX2 (ENSBGRG00000016780) #16	HOXD13 (ENSBGRG00000016836) #17	HOXD12 (ENSBGRG00000016890) #18	HOXD11 (ENSBGRG00000016923) #19	HOXD10 (ENSBGRG00000016979) #20	HOXD9 (ENSBGRG00000017014) #21	HOXD8 (ENSBGRG00000017045) #22	ENSBGRG00000017167 #23	HOXD3 (ENSBGRG00000017255) #24	HOXD1 (ENSBGRG00000017303) #25	MTX2 (ENSBGRG00000017363) #26	ENSBGRG00000000202 #27	NFE2L2 (ENSBGRG00000000213) #28	AGPS (ENSBGRG00000000237) #29	ENSBGRG00000000256 #30	ENSBGRG00000000264	ENSBGRG00000000270 #31	PDE11A (ENSBGRG00000000288) #32	ENSBGRG00000000317	ENSBGRG00000000319	ENSBGRG00000000328 #33	RBM45 (ENSBGRG00000000341) #34
Bos_b	ANCESTRAL SPECIES	3	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153	ENSGT00940000156851 #8	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #13	ENSGT00390000001859 #14	ENSGT01030000234916.g.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #31	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a #33	ENSGT00680000100059 #34	ENSGT00940000156791 #35
Cow	MODERN SPECIES	11	WIPF1 (ENSBTAG00000001585) #7	CHRNA1 (ENSBTAG00000018253) #8	CHN1 (ENSBTAG00000008028) #11	ATF2 (ENSBTAG00000002295) #12	ATP5MC3 (ENSBTAG00000002944) #13	ENSBTAG00000031711	LNPK (ENSBTAG00000018061) #14	ENSBTAG00000050237 #15	ENSBTAG00000002009	EVX2 (ENSBTAG00000049537) #16	HOXD13 (ENSBTAG00000004313) #17	HOXD12 (ENSBTAG00000004314) #18	HOXD11 (ENSBTAG00000033330) #19	HOXD10 (ENSBTAG00000016030) #20	HOXD9 (ENSBTAG00000016033) #21	HOXD8 (ENSBTAG00000049845) #22	HOXD4 (ENSBTAG00000039581) #23	HOXD3 (ENSBTAG00000004835) #24	HOXD1 (ENSBTAG00000015840) #25	MTX2 (ENSBTAG00000006693) #26	HNRNPA3 (ENSBTAG00000021580) #27	NFE2L2 (ENSBTAG00000019255) #28	AGPS (ENSBTAG00000009897) #29	TTC30B (ENSBTAG00000027696) #30	TTC30A (ENSBTAG00000027694) #31	ENSBTAG00000049860	PDE11A (ENSBTAG00000016396) #32	CYCT (ENSBTAG00000039522) #33	RBM45 (ENSBTAG00000006168) #34	OSBPL6 (ENSBTAG00000014405) #35	PRKRA (ENSBTAG00000001096) #36
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005002196 #7	CHRNA1 (ENSBIXG00005028981) #8	CHN1 (ENSBIXG00005001962) #11	ATF2 (ENSBIXG00005001719) #12	ATP5MC3 (ENSBIXG00005029222) #13	ENSBIXG00005029239	LNPK (ENSBIXG00005005282) #14	ENSBIXG00005029245 #15	ENSBIXG00005029246	EVX2 (ENSBIXG00005005288) #16	HOXD13 (ENSBIXG00005001519) #17	HOXD12 (ENSBIXG00005001517) #18	HOXD11 (ENSBIXG00005001515) #19	HOXD10 (ENSBIXG00005005289) #20	HOXD9 (ENSBIXG00005030437) #21	HOXD8 (ENSBIXG00005030431) #22	HOXD3 (ENSBIXG00005030419) #24	HOXD1 (ENSBIXG00005030413) #25	MTX2 (ENSBIXG00005030400) #26	ENSBIXG00005030356	ENSBIXG00005030352	HNRNPA3 (ENSBIXG00005030333) #27	NFE2L2 (ENSBIXG00005030317) #28	AGPS (ENSBIXG00005030278) #29	ENSBIXG00005030257 #30	ENSBIXG00005030245	ENSBIXG00005030242 #31	PDE11A (ENSBIXG00005030175) #32	ENSBIXG00005030117 #33	RBM45 (ENSBIXG00005030103) #34	OSBPL6 (ENSBIXG00005029906) #35
American bison	MODERN SPECIES	3320	SCRN3 (ENSBBBG00000017011)	GPR155 (ENSBBBG00000017134)	WIPF1 (ENSBBBG00000017196)	CHRNA1 (ENSBBBG00000017301) #8	CHN1 (ENSBBBG00000004302) #11	ATF2 (ENSBBBG00000017564) #12	ATP5MC3 (ENSBBBG00000017586) #13	ENSBBBG00000017593	LNPK (ENSBBBG00000017627) #14	ENSBBBG00000017634 #15	ENSBBBG00000017638	HOXD13 (ENSBBBG00000017641) #17	HOXD12 (ENSBBBG00000017645) #18	HOXD10 (ENSBBBG00000006962) #20	HOXD9 (ENSBBBG00000017650) #21	HOXD8 (ENSBBBG00000017657) #22	HOXD4 (ENSBBBG00000017669) #23	HOXD3 (ENSBBBG00000017682) #24	HOXD1 (ENSBBBG00000017690) #25	ENSBBBG00000004376	ENSBBBG00000017700	MTX2 (ENSBBBG00000017733) #26	ENSBBBG00000007269 #27	NFE2L2 (ENSBBBG00000017780) #28	AGPS (ENSBBBG00000017817) #29	ENSBBBG00000007701 #30	ENSBBBG00000017832 #31	ENSBBBG00000017839	PDE11A (ENSBBBG00000017894) #32	ENSBBBG00000017912 #33	RBM45 (ENSBBBG00000004406) #34
Siberian musk deer	MODERN SPECIES	342					ENSMMSG00000008116	ENSMMSG00000008102 ##11	ATF2 (ENSMMSG00000007713) #12	ENSMMSG00000007642 #13	LNPK (ENSMMSG00000007582) #14	EVX2 (ENSMMSG00000007555) #16	HOXD13 (ENSMMSG00000007541) #17	HOXD12 (ENSMMSG00000007530) #18	HOXD11 (ENSMMSG00000007513) #19	HOXD10 (ENSMMSG00000007495) #20	HOXD9 (ENSMMSG00000007480) #21	HOXD8 (ENSMMSG00000007407) #22	HOXD4 (ENSMMSG00000007365) #23	HOXD3 (ENSMMSG00000007343) #24	HOXD1 (ENSMMSG00000007322) #25	MTX2 (ENSMMSG00000007226) #26	ENSMMSG00000007068 ##27	NFE2L2 (ENSMMSG00000006992) #28	ENSMMSG00000006963	AGPS (ENSMMSG00000006894) #29	ENSMMSG00000006854 #30	ENSMMSG00000006819 #31	PDE11A (ENSMMSG00000006654) #32	ENSMMSG00000006624 #33	RBM45 (ENSMMSG00000006596) #34	OSBPL6 (ENSMMSG00000006219) #35