Pecora	ANCESTRAL SPECIES	12	ENSGT00940000155989	ENSGT01010000222287.B.a.a.a.a #9	ENSGT00390000000883 #10	ENSGT00940000153956.a #11	ENSGT00940000155896 #12	ENSGT00960000192304	ENSGT00940000157750 #13	ENSGT00940000155648.B #14	ENSGT00940000159911 #15	ENSGT00940000154372.b #16	ENSGT00940000157500 #17	ENSGT00940000158949 #18	ENSGT00390000009948.c #19	ENSGT00940000155780 #20	ENSGT00940000155921 #21	ENSGT00940000161748 #22	ENSGT00390000005739.a.b #24	ENSGT00800000124060.A.b ##25	ENSGT00800000124060.B #25	ENSGT00940000154741 #26	ENSGT00510000047961 #27	ENSGT01070000253744.a.a.a.a #28	ENSGT00510000047107.A #29	ENSGT00940000157825 #30	ENSGT00390000017833 #31	ENSGT00940000159793 #32	ENSGT00940000153249.a #33	ENSGT00940000157356 #34	ENSGT00390000008540 #35	ENSGT00940000156410 #36	ENSGT00860000134673
Yarkand deer	MODERN SPECIES	6	ENSCHYG00000004922 #7	ENSCHYG00000004940 #8	HTR7 (ENSCHYG00000004976) #9	RPP30 (ENSCHYG00000005016) #10	ANKRD1 (ENSCHYG00000005059) #11	PCGF5 (ENSCHYG00000005101) #12	HECTD2 (ENSCHYG00000005209) #13	PPP1R3C (ENSCHYG00000005346) #14	TNKS2 (ENSCHYG00000005401) #15	FGFBP3 (ENSCHYG00000005534) #16	BTAF1 (ENSCHYG00000005577) #17	CPEB3 (ENSCHYG00000005952) #18	MARCHF5 (ENSCHYG00000006078) #19	IDE (ENSCHYG00000006140) #20	KIF11 (ENSCHYG00000006424) #21	HHEX (ENSCHYG00000006561) #22	ENSCHYG00000006595 #23	EXOC6 (ENSCHYG00000006774) #24	CYP26A1 (ENSCHYG00000007274) #25	MYOF (ENSCHYG00000007374) #26	CEP55 (ENSCHYG00000008265) #27	FFAR4 (ENSCHYG00000008323) #28	RBP4 (ENSCHYG00000008366) #29	PDE6C (ENSCHYG00000008413) #30	FRA10AC1 (ENSCHYG00000008517) #31	LGI1 (ENSCHYG00000008634) #32	SLC35G1 (ENSCHYG00000008779) #33	PLCE1 (ENSCHYG00000008932) #34	NOC3L (ENSCHYG00000010057) #35	TBC1D12 (ENSCHYG00000010321) #36	HELLS (ENSCHYG00000010593) #37
Percora_a	ANCESTRAL SPECIES	14	ENSGT00940000155989	ENSGT01010000222287.B.a.a.a.a #9	ENSGT00390000000883 #10	ENSGT00940000153956.a #11	ENSGT00940000155896 #12	ENSGT00960000192304	ENSGT00940000157750 #13	ENSGT00940000155648.B #14	ENSGT00940000159911 #15	ENSGT00940000154372.b #16	ENSGT00940000157500 #17	ENSGT00940000158949 #18	ENSGT00390000009948.c #19	ENSGT00940000155780 #20	ENSGT00940000155921 #21	ENSGT00940000161748 #22	ENSGT00390000005739.a.b #24	ENSGT00800000124060.A.b ##25	ENSGT00800000124060.B #25	ENSGT00940000154741 #26	ENSGT00510000047961 #27	ENSGT01070000253744.a.a.a.a #28	ENSGT00510000047107.A #29	ENSGT00940000157825 #30	ENSGT00390000017833 #31	ENSGT00940000159793 #32	ENSGT00940000153249.a #33	ENSGT00940000157356 #34	ENSGT00390000008540 #35	ENSGT00940000156410 #36	ENSGT00860000134673
Bovidae	ANCESTRAL SPECIES	24	ENSGT00940000155989	ENSGT01010000222287.B.a.a.a.a #9	ENSGT00390000000883 #10	ENSGT00940000153956.a #11	ENSGT00940000155896 #12	ENSGT00960000192304	ENSGT00940000157750 #13	ENSGT00940000155648.B #14	ENSGT00940000159911 #15	ENSGT00940000154372.b #16	ENSGT00940000157500 #17	ENSGT00940000158949 #18	ENSGT00390000009948.c #19	ENSGT00940000155780 #20	ENSGT00940000155921 #21	ENSGT00940000161748 #22	ENSGT00390000005739.a.b #24	ENSGT00800000124060.A.b ##25	ENSGT00800000124060.B #25	ENSGT00940000154741 #26	ENSGT00510000047961 #27	ENSGT01070000253744.a.a.a.a #28	ENSGT00510000047107.A #29	ENSGT00940000157825 #30	ENSGT00390000017833 #31	ENSGT00940000159793 #32	ENSGT00940000153249.a #33	ENSGT00940000157356 #34	ENSGT00390000008540 #35	ENSGT00940000156410 #36	ENSGT00860000134673
Caprinae	ANCESTRAL SPECIES	19	ENSGT00940000155989	ENSGT01010000222287.B.a.a.a.a #9	ENSGT00390000000883 #10	ENSGT00940000153956.a #11	ENSGT00940000155896 #12	ENSGT00960000192304	ENSGT00940000157750 #13	ENSGT00940000155648.B #14	ENSGT00940000159911 #15	ENSGT00940000154372.b #16	ENSGT00940000157500 #17	ENSGT00940000158949 #18	ENSGT00390000009948.c #19	ENSGT00940000155780 #20	ENSGT00940000155921 #21	ENSGT00940000161748 #22	ENSGT00390000005739.a.b #24	ENSGT00800000124060.A.b ##25	ENSGT00800000124060.B #25	ENSGT00940000154741 #26	ENSGT00510000047961 #27	ENSGT01070000253744.a.a.a.a #28	ENSGT00510000047107.A #29	ENSGT00940000157825 #30	ENSGT00390000017833 #31	ENSGT00940000159793 #32	ENSGT00940000153249.a #33	ENSGT00940000157356 #34	ENSGT00390000008540 #35	ENSGT00940000156410 #36	ENSGT00740000115593 #37
Rambouillet Sheep	MODERN SPECIES	14	KIF20B (ENSOARG00020009389)	HTR7 (ENSOARG00020009867) #9	RPP30 (ENSOARG00020009954) #10	ANKRD1 (ENSOARG00020010048) #11	PCGF5 (ENSOARG00020010217) #12	ENSOARG00020010346	HECTD2 (ENSOARG00020010414) #13	PPP1R3C (ENSOARG00020011237) #14	TNKS2 (ENSOARG00020011293) #15	FGFBP3 (ENSOARG00020011708) #16	BTAF1 (ENSOARG00020011767) #17	CPEB3 (ENSOARG00020012975) #18	MARCHF5 (ENSOARG00020013178) #19	IDE (ENSOARG00020013259) #20	KIF11 (ENSOARG00020013982) #21	HHEX (ENSOARG00020014229) #22	EXOC6 (ENSOARG00020014320) #24	CYP26C1 (ENSOARG00020015567) ##25	CYP26A1 (ENSOARG00020015651) #25	ENSOARG00020015715	MYOF (ENSOARG00020015803) #26	CEP55 (ENSOARG00020017048) #27	FFAR4 (ENSOARG00020017148) #28	RBP4 (ENSOARG00020017216) #29	PDE6C (ENSOARG00020017264) #30	FRA10AC1 (ENSOARG00020017389) #31	LGI1 (ENSOARG00020017577) #32	SLC35G1 (ENSOARG00020017824) #33	PLCE1 (ENSOARG00020017909) #34	NOC3L (ENSOARG00020018127) #35	TBC1D12 (ENSOARG00020018393) #36
Goat	MODERN SPECIES	18	HTR7 (ENSCHIG00000018265) #9	RPP30 (ENSCHIG00000012901) #10	ENSCHIG00000009829	ANKRD1 (ENSCHIG00000018645) #11	ENSCHIG00000011467	PCGF5 (ENSCHIG00000020514) #12	HECTD2 (ENSCHIG00000017583) #13	PPP1R3C (ENSCHIG00000023028) #14	TNKS2 (ENSCHIG00000021316) #15	FGFBP3 (ENSCHIG00000015157) #16	BTAF1 (ENSCHIG00000007545) #17	CPEB3 (ENSCHIG00000017337) #18	MARCHF5 (ENSCHIG00000020959) #19	IDE (ENSCHIG00000016617) #20	KIF11 (ENSCHIG00000018268) #21	HHEX (ENSCHIG00000006086) #22	EXOC6 (ENSCHIG00000011694) #24	CYP26C1 (ENSCHIG00000021128) ##25	CYP26A1 (ENSCHIG00000016774) #25	ENSCHIG00000005190	MYOF (ENSCHIG00000016988) #26	ENSCHIG00000012567	CEP55 (ENSCHIG00000015752) #27	FFAR4 (ENSCHIG00000011853) #28	RBP4 (ENSCHIG00000023599) #29	PDE6C (ENSCHIG00000016653) #30	FRA10AC1 (ENSCHIG00000004558) #31	LGI1 (ENSCHIG00000019806) #32	SLC35G1 (ENSCHIG00000016270) #33	PLCE1 (ENSCHIG00000020993) #34	NOC3L (ENSCHIG00000023968) #35
Bovinae	ANCESTRAL SPECIES	22	ENSGT00940000155989	ENSGT01010000222287.B.a.a.a.a #9	ENSGT00390000000883 #10	ENSGT00940000153956.a #11	ENSGT00940000155896 #12	ENSGT00960000192304	ENSGT00940000157750 #13	ENSGT00940000155648.B #14	ENSGT00940000159911 #15	ENSGT00940000154372.b #16	ENSGT00940000157500 #17	ENSGT00940000158949 #18	ENSGT00390000009948.c.k #19	ENSGT00940000155780 #20	ENSGT00940000155921 #21	ENSGT00940000161748 #22	ENSGT00390000005739.a.b #24	ENSGT00800000124060.A.b ##25	ENSGT00800000124060.B #25	ENSGT00940000154741 #26	ENSGT00510000047961 #27	ENSGT01070000253744.a.a.a.a #28	ENSGT00510000047107.A #29	ENSGT00940000157825 #30	ENSGT00390000017833 #31	ENSGT00940000159793 #32	ENSGT00940000153249.a #33	ENSGT00940000157356 #34	ENSGT00390000008540 #35	ENSGT00940000156410 #36	ENSGT00860000134673
Bos	ANCESTRAL SPECIES	23	ENSGT00940000178439	ENSGT01010000222287.B.a.a.a.a #9	ENSGT00390000000883 #10	ENSGT00940000153956.a #11	ENSGT00940000155896 #12	ENSGT00960000192304	ENSGT00940000157750 #13	ENSGT00940000155648.B #14	ENSGT00940000159911 #15	ENSGT00940000154372.b #16	ENSGT00940000157500 #17	ENSGT00940000158949 #18	ENSGT00390000009948.c.k #19	ENSGT00940000155780 #20	ENSGT00940000155921.k #21	ENSGT00940000161748 #22	ENSGT00390000005739.a.b #24	ENSGT00800000124060.A.b ##25	ENSGT00800000124060.B #25	ENSGT00940000154741 #26	ENSGT00510000047961 #27	ENSGT01070000253744.a.a.a.a #28	ENSGT00510000047107.A #29	ENSGT00940000157825 #30	ENSGT00390000017833 #31	ENSGT00940000159793 #32	ENSGT00940000153249.a #33	ENSGT00940000157356 #34	ENSGT00390000008540 #35	ENSGT00940000156410 #36	ENSGT00860000134673
Bos_b	ANCESTRAL SPECIES	23	ENSGT00940000157373	ENSGT00940000155989.n	ENSGT01010000222287.B.a.a.a.a #9	ENSGT00390000000883 #10	ENSGT00940000153956.a #11	ENSGT00940000155896 #12	ENSGT00940000157750 #13	ENSGT00940000155648.B #14	ENSGT00940000159911 #15	ENSGT00940000154372.b #16	ENSGT00940000157500 #17	ENSGT00940000158949 #18	ENSGT00390000009948.c.k #19	ENSGT00940000155780 #20	ENSGT00940000155921.k #21	ENSGT00940000161748 #22	ENSGT00390000005739.a.b #24	ENSGT00800000124060.A.b ##25	ENSGT00800000124060.B #25	ENSGT00940000154741 #26	ENSGT00510000047961 #27	ENSGT01070000253744.a.a.a.a #28	ENSGT00510000047107.A #29	ENSGT00940000157825 #30	ENSGT00390000017833 #31	ENSGT00940000159793 #32	ENSGT00940000153249.a #33	ENSGT00940000157356 #34	ENSGT00390000008540 #35	ENSGT00940000156410 #36	ENSGT00860000134673
Cow	MODERN SPECIES	18	ENSBTAG00000034597	HTR7 (ENSBTAG00000008783) #9	RPP30 (ENSBTAG00000002973) #10	ANKRD1 (ENSBTAG00000011734) #11	PCGF5 (ENSBTAG00000004964) #12	HECTD2 (ENSBTAG00000011651) #13	PPP1R3C (ENSBTAG00000014831) #14	ENSBTAG00000053518 #8	TNKS2 (ENSBTAG00000009279) #15	ENSBTAG00000048707	BTAF1 (ENSBTAG00000016104) #17	CPEB3 (ENSBTAG00000015450) #18	MARCHF5 (ENSBTAG00000020981) #19	IDE (ENSBTAG00000019759) #20	KIF11 (ENSBTAG00000009383) #21	HHEX (ENSBTAG00000014217) #22	EXOC6 (ENSBTAG00000021116) #24	CYP26C1 (ENSBTAG00000039973) ##25	CYP26A1 (ENSBTAG00000021118) #25	MYOF (ENSBTAG00000016918) #26	ENSBTAG00000049134	CEP55 (ENSBTAG00000005129) #27	FFAR4 (ENSBTAG00000000437) #28	RBP4 (ENSBTAG00000000442) #29	PDE6C (ENSBTAG00000000445) #30	FRA10AC1 (ENSBTAG00000000447) #31	ASMTL (ENSBTAG00000046514)	SLC25A6 (ENSBTAG00000047418)	ENSBTAG00000052720	LGI1 (ENSBTAG00000005106) #32	ENSBTAG00000051283
Hybrid Bos Indicus	MODERN SPECIES	18	HTR7 (ENSBIXG00005006174) #9	RPP30 (ENSBIXG00005006914) #10	ANKRD1 (ENSBIXG00005024463) #11	ENSBIXG00005024487	PCGF5 (ENSBIXG00005024540) #12	HECTD2 (ENSBIXG00005024625) #13	PPP1R3C (ENSBIXG00005024657) #14	TNKS2 (ENSBIXG00005024734) #15	FGFBP3 (ENSBIXG00005024752) #16	BTAF1 (ENSBIXG00005025149) #17	CPEB3 (ENSBIXG00005025261) #18	ENSBIXG00005025287 #19	ENSBIXG00005005888	IDE (ENSBIXG00005025409) #20	ENSBIXG00005025474 #21	HHEX (ENSBIXG00005004354) #22	EXOC6 (ENSBIXG00005004394) #24	CYP26C1 (ENSBIXG00005025821) ##25	CYP26A1 (ENSBIXG00005025868) #25	MYOF (ENSBIXG00005025940) #26	CEP55 (ENSBIXG00005025979) #27	FFAR4 (ENSBIXG00005026003) #28	RBP4 (ENSBIXG00005004440) #29	PDE6C (ENSBIXG00005026102) #30	ENSBIXG00005026112	FRA10AC1 (ENSBIXG00005026172) #31	LGI1 (ENSBIXG00005026318) #32	SLC35G1 (ENSBIXG00005004502) #33	PLCE1 (ENSBIXG00005026610) #34	NOC3L (ENSBIXG00005026654) #35	TBC1D12 (ENSBIXG00005026685) #36
Bos_a	ANCESTRAL SPECIES	17	ENSGT00940000178439	ENSGT01010000222287.B.a.a.a.a #9	ENSGT00390000000883 #10	ENSGT00940000153956.a #11	ENSGT00940000155896 #12	ENSGT00960000192304	ENSGT00940000157750 #13	ENSGT00940000155648.B #14	ENSGT00940000159911 #15	ENSGT00940000154372.b #16	ENSGT00940000157500 #17	ENSGT00940000158949 #18	ENSGT00390000009948.c.k #19	ENSGT00940000155780 #20	ENSGT00940000155921.k #21	ENSGT00940000161748 #22	ENSGT00390000005739.a.b #24	ENSGT00800000124060.A.b ##25	ENSGT00800000124060.B #25	ENSGT00940000154741 #26	ENSGT00510000047961 #27	ENSGT01070000253744.a.a.a.a #28	ENSGT00510000047107.A #29	ENSGT00940000157825 #30	ENSGT00390000017833 #31	ENSGT00940000159793 #32	ENSGT00940000153249.a #33	ENSGT00940000157356 #34	ENSGT00390000008540 #35	ENSGT00940000156410 #36	ENSGT00740000115593 #37
Wild yak	MODERN SPECIES	333													MARCHF5 (ENSBMUG00000023454) #19	IDE (ENSBMUG00000023503) #20	KIF11 (ENSBMUG00000023530) #21	ENSBMUG00000023546 #22	EXOC6 (ENSBMUG00000023683) #24	CYP26C1 (ENSBMUG00000023711) ##25	CYP26A1 (ENSBMUG00000023716) #25	ENSBMUG00000023729 #26	ENSBMUG00000023778 #26	CEP55 (ENSBMUG00000023791) #27	FFAR4 (ENSBMUG00000023805) #28	RBP4 (ENSBMUG00000023810) #29	PDE6C (ENSBMUG00000023824) #30	FRA10AC1 (ENSBMUG00000023836) #31	LGI1 (ENSBMUG00000023883) #32	SLC35G1 (ENSBMUG00000023921) #33
Domestic yak	MODERN SPECIES	17	RPP30 (ENSBGRG00000018614) #10	ANKRD1 (ENSBGRG00000018779) #11	PCGF5 (ENSBGRG00000018971) #12	ENSBGRG00000019091	HECTD2 (ENSBGRG00000019144) #13	PPP1R3C (ENSBGRG00000019847) #14	TNKS2 (ENSBGRG00000019891) #15	FGFBP3 (ENSBGRG00000020006) #16	BTAF1 (ENSBGRG00000020034) #17	CPEB3 (ENSBGRG00000020594) #18	ENSBGRG00000020671	ENSBGRG00000020694	ENSBGRG00000020719 #19	IDE (ENSBGRG00000020820) #20	KIF11 (ENSBGRG00000020999) #21	HHEX (ENSBGRG00000021210) #22	EXOC6 (ENSBGRG00000021309) #24	CYP26C1 (ENSBGRG00000021833) ##25	CYP26A1 (ENSBGRG00000021895) #25	MYOF (ENSBGRG00000021992) #26	CEP55 (ENSBGRG00000023070) #27	FFAR4 (ENSBGRG00000023110) #28	RBP4 (ENSBGRG00000023139) #29	PDE6C (ENSBGRG00000023201) #30	FRA10AC1 (ENSBGRG00000024347) #31	LGI1 (ENSBGRG00000024504) #32	SLC35G1 (ENSBGRG00000024772) #33	PLCE1 (ENSBGRG00000024803) #34	ENSBGRG00000024948	NOC3L (ENSBGRG00000024961) #35	ENSBGRG00000025003
American bison	MODERN SPECIES	3094	ENSBBBG00000003963	HTR7 (ENSBBBG00000015945) #9	RPP30 (ENSBBBG00000003974) #10	ANKRD1 (ENSBBBG00000015971) #11	PCGF5 (ENSBBBG00000016004) #12	HECTD2 (ENSBBBG00000016095) #13	PPP1R3C (ENSBBBG00000016106) #14	TNKS2 (ENSBBBG00000016133) #15	BTAF1 (ENSBBBG00000004025) #17	ENSBBBG00000016226	CPEB3 (ENSBBBG00000004049) #18	ENSBBBG00000008376 #19	IDE (ENSBBBG00000016483) #20	KIF11 (ENSBBBG00000007374) #21	ENSBBBG00000016535	HHEX (ENSBBBG00000016547) #22	EXOC6 (ENSBBBG00000016620) #24	CYP26C1 (ENSBBBG00000016645) ##25	CYP26A1 (ENSBBBG00000016681) #25	MYOF (ENSBBBG00000016917) #26	CEP55 (ENSBBBG00000007143) #27	FFAR4 (ENSBBBG00000016953) #28	RBP4 (ENSBBBG00000017047) #29	PDE6C (ENSBBBG00000004220) #30	FRA10AC1 (ENSBBBG00000017096) #31	LGI1 (ENSBBBG00000017212) #32	SLC35G1 (ENSBBBG00000017230) #33	PLCE1 (ENSBBBG00000017436) #34	NOC3L (ENSBBBG00000017477) #35	TBC1D12 (ENSBBBG00000017499) #36	HELLS (ENSBBBG00000017632) #37
Siberian musk deer	MODERN SPECIES	1163	ENSMMSG00000011925	ENSMMSG00000011885	HTR7 (ENSMMSG00000011852) #9	RPP30 (ENSMMSG00000011808) #10	ANKRD1 (ENSMMSG00000011783) #11	PCGF5 (ENSMMSG00000011720) #12	HECTD2 (ENSMMSG00000011643) #13	PPP1R3C (ENSMMSG00000011617) #14	TNKS2 (ENSMMSG00000011529) #15	FGFBP3 (ENSMMSG00000011503) #16	BTAF1 (ENSMMSG00000011097) #17	CPEB3 (ENSMMSG00000011018) #18	MARCHF5 (ENSMMSG00000010975) #19	IDE (ENSMMSG00000010828) #20	KIF11 (ENSMMSG00000010787) #21	HHEX (ENSMMSG00000010745) #22	ENSMMSG00000010687	EXOC6 (ENSMMSG00000010290) #24	CYP26C1 (ENSMMSG00000010232) ##25	CYP26A1 (ENSMMSG00000010174) #25	MYOF (ENSMMSG00000010035) #26	CEP55 (ENSMMSG00000009949) #27	ENSMMSG00000009930	FFAR4 (ENSMMSG00000009909) #28	RBP4 (ENSMMSG00000009894) #29	PDE6C (ENSMMSG00000009784) #30	FRA10AC1 (ENSMMSG00000009719) #31	LGI1 (ENSMMSG00000009364) #32	SLC35G1 (ENSMMSG00000009281) #33	ENSMMSG00000009234	PLCE1 (ENSMMSG00000009069) #34