Euarchontoglires_A ANCESTRAL SPECIES 15 ENSGT00940000155989 ENSGT01010000222287.B.a.a.a.a ENSGT00390000000883 ENSGT00940000153956.a ENSGT00940000155896 ENSGT00960000192304 ENSGT00940000157750 ENSGT00940000155648.B ENSGT00940000159911 ENSGT00940000154372.b ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000161748 #22 ENSGT00390000005739.a.b ENSGT00800000124060.A.b ENSGT00800000124060.B ENSGT00940000154741 ENSGT00510000047961 ENSGT01070000253744.a.a.a.a ENSGT00510000047107.A ENSGT00940000157825 ENSGT00390000017833 ENSGT00940000159793 ENSGT00940000153249.a ENSGT00940000157356 ENSGT00390000008540 ENSGT00940000156410 ENSGT00740000115593 Glires ANCESTRAL SPECIES 16 ENSGT00940000155989 ENSGT01010000222287.B.a.a.a.a ENSGT00390000000883 ENSGT00940000153956.a ENSGT00940000155896 ENSGT00960000192304 ENSGT00940000157750 ENSGT00940000155648.B ENSGT00940000159911 ENSGT00940000154372.b ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000161748 #22 ENSGT00390000005739.a.b ENSGT00800000124060.A.b ENSGT00800000124060.B ENSGT00940000154741 ENSGT00510000047961 ENSGT01070000253744.a.a.a.a ENSGT00510000047107.A ENSGT00940000157825 ENSGT00390000017833 ENSGT00940000159793 ENSGT00940000153249.a ENSGT00940000157356 ENSGT00390000008540 ENSGT00940000156410 ENSGT00740000115593 Lagomorpha ANCESTRAL SPECIES ENSGT00940000161748 #22 Pika MODERN SPECIES 2177 HHEX (ENSOPRG00000003896) #22 MAT1A (ENSOPRG00000003913) #23 ENSOPRG00000018784 #24 DYDC2 (ENSOPRG00000003938) #25 PRXL2A (ENSOPRG00000003958) #26 TSPAN14 (ENSOPRG00000003969) #27 SH2D4B (ENSOPRG00000003990) #28 Rodentia ANCESTRAL SPECIES 16 ENSGT00940000155989 ENSGT01010000222287.B.a.a.a.a ENSGT00390000000883 ENSGT00940000153956.a ENSGT00940000155896 ENSGT00960000192304 ENSGT00940000157750 ENSGT00940000155648.B ENSGT00940000159911 ENSGT00940000154372.b ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000161748 #22 ENSGT00390000005739.a.b ENSGT00800000124060.A.b ENSGT00800000124060.B ENSGT00940000154741 ENSGT00510000047961 ENSGT01070000253744.a.a.a.a ENSGT00510000047107.A ENSGT00940000157825 ENSGT00390000017833 ENSGT00940000159793 ENSGT00940000153249.a ENSGT00940000157356 ENSGT00390000008540 ENSGT00940000156410 ENSGT00740000115593 Rodentia_B ANCESTRAL SPECIES 10 ENSGT00940000155989 ENSGT01010000222287.B.a.a.a.a ENSGT00390000000883 ENSGT00940000153956.a ENSGT00940000155896 ENSGT00960000192304 ENSGT00940000157750 ENSGT00940000155648.B ENSGT00940000159911 ENSGT00940000154372.b ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000161748 #22 ENSGT00390000005739.a.b ENSGT00800000124060.A.b ENSGT00800000124060.B ENSGT00940000154741 ENSGT00510000047961 ENSGT01070000253744.a.a.a.a ENSGT00510000047107.A ENSGT00940000157825 ENSGT00390000017833 ENSGT00940000159793 ENSGT00940000153249.a ENSGT00940000157356 ENSGT00390000008540 ENSGT00940000156410 ENSGT00740000115593 Myomorpha ANCESTRAL SPECIES 1 ENSGT01010000222287.B.a.a.a.a ENSGT00390000000883 ENSGT00940000153956.a ENSGT00940000155896 ENSGT00960000192304 ENSGT00940000157750 ENSGT00940000155648.B ENSGT00940000159911 ENSGT00940000154372.b ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000164435 ENSGT00940000161748 #22 ENSGT00390000005739.a.b ENSGT00800000124060.A.b ENSGT00800000124060.B ENSGT00940000154741 ENSGT00510000047961 ENSGT01070000253744.a.a.a.a ENSGT00510000047107.A ENSGT00940000157825 ENSGT00390000017833 ENSGT00940000159793 ENSGT00940000153249.a ENSGT00940000157356 ENSGT00390000008540 ENSGT00940000156410 ENSGT00740000115593 Lesser Egyptian jerboa MODERN SPECIES 50 Rpp30 (ENSJJAG00000020041) Ankrd1 (ENSJJAG00000005637) ENSJJAG00000012541 Pcgf5 (ENSJJAG00000019027) Hectd2 (ENSJJAG00000002659) Ppp1r3c (ENSJJAG00000023747) Tnks2 (ENSJJAG00000024121) ENSJJAG00000010510 Btaf1 (ENSJJAG00000016636) Cpeb3 (ENSJJAG00000009135) ENSJJAG00000023593 Ide (ENSJJAG00000019815) Kif11 (ENSJJAG00000016860) ENSJJAG00000000311 ENSJJAG00000022605 ENSJJAG00000021438 #22 Exoc6 (ENSJJAG00000015045) Cyp26c1 (ENSJJAG00000019909) Cyp26a1 (ENSJJAG00000002991) Myof (ENSJJAG00000018065) Cep55 (ENSJJAG00000010360) Ffar4 (ENSJJAG00000009459) Rbp4 (ENSJJAG00000019150) Pde6c (ENSJJAG00000000562) Fra10ac1 (ENSJJAG00000017916) Lgi1 (ENSJJAG00000016222) Slc35g1 (ENSJJAG00000011945) Plce1 (ENSJJAG00000023188) Noc3l (ENSJJAG00000018611) ENSJJAG00000013249 Hells (ENSJJAG00000000865) Muroidea ANCESTRAL SPECIES ENSGT00940000161748 #22 Upper Galilee mountains blind mole rat MODERN SPECIES 1499 ENSNGAG00000013645 Kif20b (ENSNGAG00000014138) ENSNGAG00000000031 Htr7 (ENSNGAG00000010658) ENSNGAG00000012018 Ankrd1 (ENSNGAG00000012773) ENSNGAG00000015961 Hectd2 (ENSNGAG00000018245) Ppp1r3c (ENSNGAG00000014792) Tnks2 (ENSNGAG00000018372) Btaf1 (ENSNGAG00000000366) Cpeb3 (ENSNGAG00000015621) Marchf5 (ENSNGAG00000011481) Ide (ENSNGAG00000018859) Kif11 (ENSNGAG00000018093) ENSNGAG00000017053 #22 Exoc6 (ENSNGAG00000001199) Cyp26c1 (ENSNGAG00000006454) Cyp26a1 (ENSNGAG00000020319) Myof (ENSNGAG00000013577) Kangaroo rat MODERN SPECIES 505 Htr7 (ENSDORG00000002925) Rpp30 (ENSDORG00000015333) Ankrd1 (ENSDORG00000015336) Pcgf5 (ENSDORG00000027987) Hectd2 (ENSDORG00000002137) ENSDORG00000008666 Tnks2 (ENSDORG00000015121) Fgfbp3 (ENSDORG00000025665) Btaf1 (ENSDORG00000000104) Cpeb3 (ENSDORG00000028940) Marchf5 (ENSDORG00000027150) Ide (ENSDORG00000013205) Kif11 (ENSDORG00000008541) ENSDORG00000028544 #22 Exoc6 (ENSDORG00000006736) Cyp26c1 (ENSDORG00000006737) Cyp26a1 (ENSDORG00000006738) Myof (ENSDORG00000014710) Cep55 (ENSDORG00000004053) Ffar4 (ENSDORG00000004054) ENSDORG00000009114 Rbp4 (ENSDORG00000004057) Pde6c (ENSDORG00000004060) Fra10ac1 (ENSDORG00000004062) Lgi1 (ENSDORG00000023293) Slc35g1 (ENSDORG00000004056) Plce1 (ENSDORG00000011803) Noc3l (ENSDORG00000011806) Tbc1d12 (ENSDORG00000011808) Rodentia_A ANCESTRAL SPECIES 15 ENSGT00940000166824.c ENSGT00940000155989 ENSGT01010000222287.B.a.a.a.a ENSGT00390000000883 ENSGT00940000153956.a ENSGT00940000155896 ENSGT00940000157750 ENSGT00940000155648.B ENSGT00940000159911 ENSGT00940000154372.b ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000161748 #22 ENSGT00390000005739.a.b ENSGT00800000124060.A.b ENSGT00800000124060.B ENSGT00940000154741 ENSGT00510000047961 ENSGT01070000253744.a.a.a.a ENSGT00510000047107.A ENSGT00940000157825 ENSGT00390000017833 ENSGT00940000159793 ENSGT00940000153249.a ENSGT00940000157356 ENSGT00390000008540 ENSGT00940000156410 ENSGT00740000115593 Sciuridae ANCESTRAL SPECIES 30 ENSGT00940000157373 ENSGT00940000155989 ENSGT01010000222287.B.a.a.a.a ENSGT00390000000883 ENSGT00940000153956.a ENSGT00940000155896 ENSGT00940000157750 ENSGT00940000155648.B ENSGT00940000159911 ENSGT00940000154372.b ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000161748 #22 ENSGT00390000005739.a.b ENSGT00800000124060.A.b ENSGT00800000124060.B ENSGT00940000154741 ENSGT00510000047961 ENSGT01070000253744.a.a.a.a ENSGT00510000047107.A ENSGT00940000157825 ENSGT00390000017833 ENSGT00940000159793 ENSGT00940000153249.a ENSGT00940000157356 ENSGT00390000008540 ENSGT00940000156410 ENSGT00740000115593 Marmotini ANCESTRAL SPECIES 16 ENSGT00940000157373 ENSGT00940000155989 ENSGT01010000222287.B.a.a.a.a ENSGT00390000000883 ENSGT00940000153956.a ENSGT00940000155896 ENSGT00940000157750 ENSGT00940000155648.B ENSGT00940000159911 ENSGT00940000154372.b ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000161748 #22 ENSGT00390000005739.a.b ENSGT00800000124060.A.b ENSGT00800000124060.B ENSGT00940000154741 ENSGT00510000047961 ENSGT01070000253744.a.a.a.a ENSGT00510000047107.A ENSGT00940000157825 ENSGT00390000017833 ENSGT00940000159793 ENSGT00940000153249.a ENSGT00940000157356 ENSGT00390000008540 ENSGT00940000156410 ENSGT00740000115593 Alpin marmot MODERN SPECIES 66 ENSMMMG00000012292 HTR7 (ENSMMMG00000012295) RPP30 (ENSMMMG00000012309) ANKRD1 (ENSMMMG00000012324) ENSMMMG00000012338 PCGF5 (ENSMMMG00000012341) HECTD2 (ENSMMMG00000012452) PPP1R3C (ENSMMMG00000012486) TNKS2 (ENSMMMG00000012490) BTAF1 (ENSMMMG00000012536) CPEB3 (ENSMMMG00000012583) MARCHF5 (ENSMMMG00000012751) ENSMMMG00000012791 IDE (ENSMMMG00000012810) KIF11 (ENSMMMG00000014562) HHEX (ENSMMMG00000014588) #22 EXOC6 (ENSMMMG00000014609) CYP26C1 (ENSMMMG00000014630) CYP26A1 (ENSMMMG00000014654) MYOF (ENSMMMG00000014697) CEP55 (ENSMMMG00000016392) FFAR4 (ENSMMMG00000016402) RBP4 (ENSMMMG00000016408) PDE6C (ENSMMMG00000016417) FRA10AC1 (ENSMMMG00000016466) LGI1 (ENSMMMG00000016475) SLC35G1 (ENSMMMG00000016542) PLCE1 (ENSMMMG00000016548) NOC3L (ENSMMMG00000016670) Marmotini_b ANCESTRAL SPECIES 136 ENSGT01010000222287.B.a.a.a.a ENSGT00390000000883 ENSGT00940000153956.a ENSGT00390000017405 ENSGT00940000160856 ENSGT00940000155896 ENSGT00940000157750 ENSGT00940000155648.B ENSGT00940000159911 ENSGT00940000154372.b ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000161748 #22 ENSGT00940000164435 ENSGT00390000005739.a.b ENSGT00800000124060.A.b ENSGT00800000124060.B ENSGT00940000154741 ENSGT00510000047961 ENSGT01070000253744.a.a.a.a ENSGT00510000047107.A ENSGT00940000157825 ENSGT00390000017833 ENSGT00940000159793 ENSGT00940000153249.a ENSGT00940000157356 ENSGT00390000008540 ENSGT00940000156410 Squirrel MODERN SPECIES 201 ENSSTOG00000033664 HTR7 (ENSSTOG00000028466) RPP30 (ENSSTOG00000027002) ANKRD1 (ENSSTOG00000009160) PCGF5 (ENSSTOG00000009179) HECTD2 (ENSSTOG00000009022) PPP1R3C (ENSSTOG00000025781) TNKS2 (ENSSTOG00000002349) BTAF1 (ENSSTOG00000008677) CPEB3 (ENSSTOG00000028061) MARCHF5 (ENSSTOG00000005998) ENSSTOG00000025613 IDE (ENSSTOG00000020385) ENSSTOG00000024075 KIF11 (ENSSTOG00000006209) HHEX (ENSSTOG00000006255) #22 ENSSTOG00000030502 EXOC6 (ENSSTOG00000015601) CYP26C1 (ENSSTOG00000015614) CYP26A1 (ENSSTOG00000015617) MYOF (ENSSTOG00000034018) CEP55 (ENSSTOG00000016092) FFAR4 (ENSSTOG00000016093) RBP4 (ENSSTOG00000016094) PDE6C (ENSSTOG00000024806) FRA10AC1 (ENSSTOG00000016097) LGI1 (ENSSTOG00000016098) SLC35G1 (ENSSTOG00000014149) PLCE1 (ENSSTOG00000014154) NOC3L (ENSSTOG00000027599) TBC1D12 (ENSSTOG00000019398) Eurasian red squirrel MODERN SPECIES 13 ENSSVLG00005002501 ENSSVLG00005002475 RPP30 (ENSSVLG00005002454) ANKRD1 (ENSSVLG00005002411) ENSSVLG00005002380 PCGF5 (ENSSVLG00005002364) HECTD2 (ENSSVLG00005002277) PPP1R3C (ENSSVLG00005002239) ENSSVLG00005002229 TNKS2 (ENSSVLG00005002210) FGFBP3 (ENSSVLG00005002179) CPEB3 (ENSSVLG00005001674) MARCHF5 (ENSSVLG00005001638) IDE (ENSSVLG00005001509) KIF11 (ENSSVLG00005001396) ENSSVLG00005001363 #22 EXOC6 (ENSSVLG00005001255) CYP26C1 (ENSSVLG00005001162) CYP26A1 (ENSSVLG00005001125) MYOF (ENSSVLG00005001073) CEP55 (ENSSVLG00005000977) RBP4 (ENSSVLG00005000954) FFAR4 (ENSSVLG00005000917) ENSSVLG00005000896 PDE6C (ENSSVLG00005000854) FRA10AC1 (ENSSVLG00005000812) LGI1 (ENSSVLG00005000690) SLC35G1 (ENSSVLG00005000602) PLCE1 (ENSSVLG00005000526) NOC3L (ENSSVLG00005000479) ENSSVLG00005000452 Hystricomorpha ANCESTRAL SPECIES 1 ENSGT00940000166824.c ENSGT00940000155989 ENSGT01010000222287.B.a.a.a.a ENSGT00390000000883 ENSGT00940000153956.a ENSGT00940000155896 ENSGT00940000157750 ENSGT00940000155648.B ENSGT00940000159911 ENSGT00940000154372.b ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000161748 #22 ENSGT00390000005739.a.b ENSGT00800000124060.A.b ENSGT00800000124060.B ENSGT00940000154741 ENSGT00510000047961 ENSGT01070000253744.a.a.a.a ENSGT00510000047107.A ENSGT00940000157825 ENSGT00390000017833 ENSGT00940000159793 ENSGT00940000153249.a ENSGT00940000157356 ENSGT00390000008540 ENSGT00940000156410 ENSGT00740000115593 Naked mole-rat female MODERN SPECIES 4 ENSHGLG00000013072 ENSHGLG00000016279 ENSHGLG00000016315 ENSHGLG00000047830 PCGF5 (ENSHGLG00000016348) HECTD2 (ENSHGLG00000013810) ENSHGLG00000033981 PPP1R3C (ENSHGLG00000045942) TNKS2 (ENSHGLG00000018423) FGFBP3 (ENSHGLG00000046261) BTAF1 (ENSHGLG00000010425) CPEB3 (ENSHGLG00000014022) MARCH5 (ENSHGLG00000044946) IDE (ENSHGLG00000012665) KIF11 (ENSHGLG00000014395) HHEX (ENSHGLG00000033111) #22 EXOC6 (ENSHGLG00000012531) ENSHGLG00000042956 ENSHGLG00000039738 CYP26C1 (ENSHGLG00000015899) CYP26A1 (ENSHGLG00000015940) ENSHGLG00000045003 MYOF (ENSHGLG00000016065) CEP55 (ENSHGLG00000006591) FFAR4 (ENSHGLG00000007702) RBP4 (ENSHGLG00000008358) PDE6C (ENSHGLG00000011305) FRA10AC1 (ENSHGLG00000016660) ENSHGLG00000036961 LGI1 (ENSHGLG00000034142) ENSHGLG00000032608 Hystricomorpha_a ANCESTRAL SPECIES 3 ENSGT00940000156169 ENSGT00940000157373 ENSGT00940000155989 ENSGT01010000222287.B.a.a.a.a ENSGT00390000000883 ENSGT00940000153956.a ENSGT00940000155896 ENSGT00940000157750 ENSGT00940000155648.B ENSGT00940000159911 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000161748 #22 ENSGT00390000005739.a.b ENSGT00800000124060.A.b ENSGT00800000124060.B ENSGT00940000154741 ENSGT00510000047961 ENSGT01070000253744.a.a.a.a ENSGT00510000047107.A ENSGT00940000157825 ENSGT00390000017833 ENSGT00940000159793 ENSGT00940000153249.a ENSGT00940000157356 ENSGT00390000008540 ENSGT00940000156410 ENSGT00740000115593 Guinea pig MODERN SPECIES 135 TNKS2 (ENSCPOG00000002254) BTAF1 (ENSCPOG00000003886) CPEB3 (ENSCPOG00000037660) MARCHF5 (ENSCPOG00000019626) IDE (ENSCPOG00000000805) KIF11 (ENSCPOG00000021736) ENSCPOG00000031265 #22 EXOC6 (ENSCPOG00000003806) ENSCPOG00000030450 CYP26C1 (ENSCPOG00000003810) CYP26A1 (ENSCPOG00000021751) MYOF (ENSCPOG00000009867) CEP55 (ENSCPOG00000007305) FFAR4 (ENSCPOG00000002132) RBP4 (ENSCPOG00000002134) PDE6C (ENSCPOG00000004287) FRA10AC1 (ENSCPOG00000004292) LGI1 (ENSCPOG00000008822) SLC35G1 (ENSCPOG00000012167) PLCE1 (ENSCPOG00000009723) NOC3L (ENSCPOG00000009746) ENSCPOG00000037761 Hystricomorpha_b ANCESTRAL SPECIES 72 ENSGT00940000156169 ENSGT00940000157373 ENSGT00940000155989 ENSGT01010000222287.B.a.a.a.a ENSGT00390000000883 ENSGT00940000153956.a ENSGT00940000155896 ENSGT00940000157750 ENSGT00940000155648.B ENSGT00940000159911 ENSGT00940000157500 ENSGT00940000158949 ENSGT00390000009948.c ENSGT00940000155780 ENSGT00940000155921 ENSGT00940000161748 #22 ENSGT00390000005739.a.b ENSGT00800000124060.A.b ENSGT00800000124060.B ENSGT00940000154741 Degu MODERN SPECIES 87 ENSODEG00000004530 ANKRD1 (ENSODEG00000005129) PCGF5 (ENSODEG00000004787) ENSODEG00000005047 HECTD2 (ENSODEG00000004980) PPP1R3C (ENSODEG00000006013) TNKS2 (ENSODEG00000004816) BTAF1 (ENSODEG00000005172) ENSODEG00000005031 CPEB3 (ENSODEG00000004591) ENSODEG00000004464 MARCHF5 (ENSODEG00000004219) ENSODEG00000005936 IDE (ENSODEG00000005398) KIF11 (ENSODEG00000006812) HHEX (ENSODEG00000006657) #22 ENSODEG00000005404 ENSODEG00000019192 ENSODEG00000005119 ENSODEG00000019122 ENSODEG00000005000 ENSODEG00000005878 ENSODEG00000005365 EXOC6 (ENSODEG00000005032) CYP26C1 (ENSODEG00000006273) CYP26A1 (ENSODEG00000006141) ENSODEG00000006071 MYOF (ENSODEG00000004826) ENSODEG00000004069 ENSODEG00000005256 ENSODEG00000005072 Long-tailed chinchilla MODERN SPECIES 132 PANK1 (ENSCLAG00000009547) KIF20B (ENSCLAG00000008733) HTR7 (ENSCLAG00000011360) RPP30 (ENSCLAG00000008595) ANKRD1 (ENSCLAG00000009887) PCGF5 (ENSCLAG00000013777) ENSCLAG00000012695 PPP1R3C (ENSCLAG00000012433) ENSCLAG00000010844 TNKS2 (ENSCLAG00000013558) BTAF1 (ENSCLAG00000012888) CPEB3 (ENSCLAG00000011817) MARCHF5 (ENSCLAG00000013192) IDE (ENSCLAG00000013467) KIF11 (ENSCLAG00000013622) HHEX (ENSCLAG00000012119) #22 EXOC6 (ENSCLAG00000008310) CYP26C1 (ENSCLAG00000010270) CYP26A1 (ENSCLAG00000010048) MYOF (ENSCLAG00000007931) Tree shrew MODERN SPECIES 838 IDE (ENSTBEG00000007497) KIF11 (ENSTBEG00000008893) HHEX (ENSTBEG00000001339) #22