Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000004596 #8	ENSGT00940000156939 #9	ENSGT00390000004554 #10	ENSGT00390000004215.a.b.b.c.a #11	ENSGT00940000154521.B #12	ENSGT01020000230389.a.a.b #13	ENSGT00390000001622 #14	ENSGT00950000182872.f.b.a #15	ENSGT00940000153577.C #16	ENSGT00390000014869 #17	ENSGT00940000158136 #18	ENSGT00950000183082.a #19	ENSGT00940000153691.a.b #20	ENSGT00940000153691.a.a.e #21	ENSGT00940000153691.a.a.f ##21	ENSGT00940000160587 #22	ENSGT00390000003283 #23	ENSGT00940000158005 #24	ENSGT00940000162264 #25	ENSGT00390000005715.b #26	ENSGT00940000163203.a #27	ENSGT00390000005715.a #28	ENSGT00940000160432 #29	ENSGT00940000159573 #30	ENSGT00390000008295.a #31	ENSGT00390000005075 #32	ENSGT00550000074901 #33	ENSGT00940000159757 #34	ENSGT00940000160687 #35	ENSGT00940000161650 #36	ENSGT00940000159836 #37
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000160309 #7	ENSGT00390000004596 #8	ENSGT00940000156939 #9	ENSGT00390000004554 #10	ENSGT00390000004215.a.b.b.c.a #11	ENSGT00940000154521.B #12	ENSGT01020000230389.a.a.b #13	ENSGT00390000001622 #14	ENSGT00950000182872.f.b.a #15	ENSGT00940000153577.C #16	ENSGT00390000014869 #17	ENSGT00940000158136 #18	ENSGT00950000183082.a #19	ENSGT00940000153691.a.b #20	ENSGT00940000153691.a.a.e #21	ENSGT00940000160587 #22	ENSGT00390000003283 #23	ENSGT00940000158005 #24	ENSGT00940000162264 #25	ENSGT00390000005715.b #26	ENSGT00940000163203.a #27	ENSGT00390000005715.a #28	ENSGT00940000160432 #29	ENSGT00940000159573 #30	ENSGT00390000008295.a #31	ENSGT00390000005075 #32	ENSGT00550000074901 #33	ENSGT00940000159757 #34	ENSGT00940000160687 #35	ENSGT00940000161650 #36	ENSGT00940000159836 #37
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000013928	ENSGT00940000160309 #7	ENSGT00390000004596 #8	ENSGT00940000156939 #9	ENSGT00390000004554 #10	ENSGT00390000004215.a.b.b.c.a #11	ENSGT00940000154521.B #12	ENSGT01020000230389.a.a.b #13	ENSGT00390000001622 #14	ENSGT00950000182872.f.b.a #15	ENSGT00940000153577.C #16	ENSGT00390000014869 #17	ENSGT00940000158136 #18	ENSGT00950000183082.a #19	ENSGT00940000153691.a.b #20	ENSGT00940000160587 #22	ENSGT00390000003283 #23	ENSGT00940000158005 #24	ENSGT00940000162264 #25	ENSGT00390000005715.b #26	ENSGT00940000163203.a #27	ENSGT00390000005715.a #28	ENSGT00940000160432 #29	ENSGT00940000159573 #30	ENSGT00390000008295.a #31	ENSGT00390000005075 #32	ENSGT00550000074901 #33	ENSGT00940000159757 #34	ENSGT00940000160687 #35	ENSGT00940000161650 #36	ENSGT00940000159836 #37
spretus	MODERN SPECIES	17	Zfp319 (MGP_SPRETEiJ_G0032539) #7	Usb1 (MGP_SPRETEiJ_G0032540) #8	Mmp15 (MGP_SPRETEiJ_G0032541) #9	Cfap20 (MGP_SPRETEiJ_G0032542) #10	Csnk2a2 (MGP_SPRETEiJ_G0032543) #11	Ccdc113 (MGP_SPRETEiJ_G0032544) #12	Prss54 (MGP_SPRETEiJ_G0032545) #13	Gins3 (MGP_SPRETEiJ_G0032546) #14	Ndrg4 (MGP_SPRETEiJ_G0032547) #15	Setd6 (MGP_SPRETEiJ_G0032548) #16	Cnot1 (MGP_SPRETEiJ_G0032549) #17	Slc38a7 (MGP_SPRETEiJ_G0032550) #18	Got2 (MGP_SPRETEiJ_G0032551) #19	Cdh8 (MGP_SPRETEiJ_G0032552) #20	Cdh11 (MGP_SPRETEiJ_G0032553) #21	Cdh5 (MGP_SPRETEiJ_G0032555) #22	Bean1 (MGP_SPRETEiJ_G0032556) #23	Tk2 (MGP_SPRETEiJ_G0032557) #24	Cklf (MGP_SPRETEiJ_G0032558) #25	MGP_SPRETEiJ_G0032559 #26	MGP_SPRETEiJ_G0032560 #27	Cmtm2b (MGP_SPRETEiJ_G0032561) #28	Cmtm3 (MGP_SPRETEiJ_G0032562) #29	Cmtm4 (MGP_SPRETEiJ_G0032563) #30	Dync1li2 (MGP_SPRETEiJ_G0032564) #31	Terb1 (MGP_SPRETEiJ_G0032565) #32	Nae1 (MGP_SPRETEiJ_G0032566) #33	Car7 (MGP_SPRETEiJ_G0032567) #34	Pdp2 (MGP_SPRETEiJ_G0032568) #35	Cdh16 (MGP_SPRETEiJ_G0032569) #36	Rrad (MGP_SPRETEiJ_G0032570) #37
Steppe mouse	MODERN SPECIES	2604																Cdh5 (ENSMSIG00000023895) #22	ENSMSIG00000023751 #23	Tk2 (ENSMSIG00000023721) #24	ENSMSIG00000023711 #25	ENSMSIG00000023670 #26	ENSMSIG00000023656 #25	Cmtm3 (ENSMSIG00000023616) #29	Cmtm4 (ENSMSIG00000023615) #30	Dync1li2 (ENSMSIG00000023574) #31	Terb1 (ENSMSIG00000023542) #32	Nae1 (ENSMSIG00000023417) #33	Car7 (ENSMSIG00000023381) #34	ENSMSIG00000023374	Pdp2 (ENSMSIG00000023367) #35	Cdh16 (ENSMSIG00000023256) #36	Rrad (ENSMSIG00000023236) #37
Mouse	MODERN SPECIES	17	Usb1 (ENSMUSG00000031792) #8	Mmp15 (ENSMUSG00000031790) #9	Cfap20 (ENSMUSG00000031796) #10	Csnk2a2 (ENSMUSG00000046707) #11	Ccdc113 (ENSMUSG00000036598) #12	Prss54 (ENSMUSG00000048400) #13	Gins3 (ENSMUSG00000031669) #14	Ndrg4 (ENSMUSG00000036564) #15	Setd6 (ENSMUSG00000031671) #16	Cnot1 (ENSMUSG00000036550) #17	Sap18b (ENSMUSG00000061104)	Slc38a7 (ENSMUSG00000036534) #18	Got2 (ENSMUSG00000031672) #19	Cdh8 (ENSMUSG00000036510) #20	Cdh11 (ENSMUSG00000031673) #21	Cdh5 (ENSMUSG00000031871) #22	Bean1 (ENSMUSG00000031872) #23	Tk2 (ENSMUSG00000035824) #24	Cklf (ENSMUSG00000054400) #25	Cmtm2a (ENSMUSG00000074127) #26	Cmtm1 (ENSMUSG00000110430) #27	Cmtm2b (ENSMUSG00000035785) #28	Cmtm3 (ENSMUSG00000031875) #29	Cmtm4 (ENSMUSG00000096188) #30	Dync1li2 (ENSMUSG00000035770) #31	Terb1 (ENSMUSG00000052616) #32	Nae1 (ENSMUSG00000031878) #33	Car7 (ENSMUSG00000031883) #34	Pdp2 (ENSMUSG00000048371) #35	Cdh16 (ENSMUSG00000031881) #36	Rrad (ENSMUSG00000031880) #37
Ryukyu mouse	MODERN SPECIES	17	Mmp15 (MGP_CAROLIEiJ_G0031422) #9	Cfap20 (MGP_CAROLIEiJ_G0031423) #10	Csnk2a2 (MGP_CAROLIEiJ_G0031424) #11	Ccdc113 (MGP_CAROLIEiJ_G0031425) #12	Prss54 (MGP_CAROLIEiJ_G0031426) #13	Gins3 (MGP_CAROLIEiJ_G0031427) #14	Ndrg4 (MGP_CAROLIEiJ_G0031428) #15	Setd6 (MGP_CAROLIEiJ_G0031429) #16	Cnot1 (MGP_CAROLIEiJ_G0031430) #17	Slc38a7 (MGP_CAROLIEiJ_G0031431) #18	MGP_CAROLIEiJ_G0031432 #19	MGP_CAROLIEiJ_G0031433	Cdh8 (MGP_CAROLIEiJ_G0031434) #20	Cdh11 (MGP_CAROLIEiJ_G0031435) #21	MGP_CAROLIEiJ_G0031436 ##21	Cdh5 (MGP_CAROLIEiJ_G0031438) #22	MGP_CAROLIEiJ_G0031439 #23	Tk2 (MGP_CAROLIEiJ_G0031440) #24	Cklf (MGP_CAROLIEiJ_G0031441) #25	MGP_CAROLIEiJ_G0031442 #26	MGP_CAROLIEiJ_G0031443 #27	Cmtm2b (MGP_CAROLIEiJ_G0031444) #28	Cmtm3 (MGP_CAROLIEiJ_G0031445) #29	Cmtm4 (MGP_CAROLIEiJ_G0031446) #30	Dync1li2 (MGP_CAROLIEiJ_G0031447) #31	Terb1 (MGP_CAROLIEiJ_G0031448) #32	Nae1 (MGP_CAROLIEiJ_G0031449) #33	Car7 (MGP_CAROLIEiJ_G0031450) #34	Pdp2 (MGP_CAROLIEiJ_G0031451) #35	Cdh16 (MGP_CAROLIEiJ_G0031452) #36	Rrad (MGP_CAROLIEiJ_G0031453) #37