Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000162215 #9	ENSGT00940000162315 #10	ENSGT01100000263479.E.h ##12	ENSGT00390000015308	ENSGT00940000162848	ENSGT01100000263479.B #12	ENSGT01100000263479.C #13	ENSGT00940000161392 #14	ENSGT00940000162336 #15	ENSGT00940000161038 #16	ENSGT00940000161167 #17	ENSGT00390000003308.a #18	ENSGT00950000182929.B.b #19	ENSGT00390000011584 #20	ENSGT00390000015914 #21	ENSGT00390000007913 #22	ENSGT00530000063461.B #23	ENSGT00940000160230 #24	ENSGT00940000153892.A #25	ENSGT00940000160667 #26	ENSGT00390000018039 #27	ENSGT00940000157454 #28	ENSGT00650000093443.x #29	ENSGT00390000012948.a #30	ENSGT00390000008756	ENSGT00940000163913	ENSGT01030000234613.b.b #31	ENSGT00940000159555 #32	ENSGT00950000182772.A.a.a.b #33	ENSGT01030000234877	ENSGT00940000162356 #34
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00940000162402 #7	ENSGT00940000162215 #9	ENSGT00940000162315 #10	ENSGT01100000263479.E.h ##12	ENSGT00940000162848	ENSGT01100000263479.B #12	ENSGT01100000263479.C #13	ENSGT00940000161392 #14	ENSGT00940000162336 #15	ENSGT00940000161038 #16	ENSGT00940000161167 #17	ENSGT00390000003308.a #18	ENSGT00950000182929.B.b #19	ENSGT00390000011584 #20	ENSGT00390000015914 #21	ENSGT00390000007913 #22	ENSGT00530000063461.B #23	ENSGT00940000160230 #24	ENSGT00940000153892.A #25	ENSGT00940000160667 #26	ENSGT00390000018039 #27	ENSGT00940000157454 #28	ENSGT00650000093443.x #29	ENSGT00390000012948.a #30	ENSGT00390000008756	ENSGT00940000163913	ENSGT01030000234613.b.b #31	ENSGT00940000159555 #32	ENSGT00950000182772.A.a.a.b #33	ENSGT01030000234877	ENSGT00940000162356 #34
Hystricomorpha_a	ANCESTRAL SPECIES	39	ENSGT00940000162819	ENSGT00940000162402 #7	ENSGT00940000162215 #9	ENSGT00940000162315 #10	ENSGT01100000263479.E.h ##12	ENSGT01100000263479.B #12	ENSGT01100000263479.C #13	ENSGT00940000161392 #14	ENSGT00940000162336 #15	ENSGT00940000161038 #16	ENSGT00940000161167 #17	ENSGT00390000003308.a #18	ENSGT00950000182929.B.b #19	ENSGT00390000011584 #20	ENSGT00390000015914 #21	ENSGT00390000007913 #22	ENSGT00530000063461.B #23	ENSGT00940000160230 #24	ENSGT00940000153892.A #25	ENSGT00940000160667 #26	ENSGT00390000018039 #27	ENSGT00940000157454 #28	ENSGT00650000093443.x #29	ENSGT00390000012948.a #30	ENSGT00390000008756	ENSGT00940000163913	ENSGT01030000234613.b.b #31	ENSGT00940000159555 #32	ENSGT00950000182772.A.a.a.b #33	ENSGT01030000234877	ENSGT00940000162356 #34
Hystricomorpha_b	ANCESTRAL SPECIES	49	ENSGT00940000162819	ENSGT00940000162402 #7	ENSGT00940000162215 #9	ENSGT00940000162315 #10	ENSGT01100000263479.E.h ##12	ENSGT01100000263479.B #12	ENSGT01100000263479.C #13	ENSGT00940000161392 #14	ENSGT00940000162336 #15	ENSGT00940000161038 #16	ENSGT00940000161167 #17	ENSGT00390000003308.a #18	ENSGT00950000182929.B.b #19	ENSGT00390000011584 #20	ENSGT00390000015914 #21	ENSGT00390000007913 #22	ENSGT00530000063461.B #23	ENSGT00940000160230 #24	ENSGT00940000153892.A #25	ENSGT00940000160667 #26	ENSGT00390000018039 #27	ENSGT00940000157454 #28	ENSGT00650000093443.x #29	ENSGT00390000012948.a #30	ENSGT00390000008756	ENSGT00940000163913	ENSGT01030000234613.b.b #31	ENSGT00940000159555 #32	ENSGT00950000182772.A.a.a.b #33	ENSGT00940000162356 #34	ENSGT00950000182970.C #35
Degu	MODERN SPECIES	238	ENSODEG00000010507 #7	ZNF235 (ENSODEG00000008851) #8	ZNF112 (ENSODEG00000009193) #9	ZNF180 (ENSODEG00000010071) #10	ENSODEG00000019539 #11	CEACAM19 (ENSODEG00000008206) #12	CEACAM16 (ENSODEG00000008673) #13	BCL3 (ENSODEG00000009380) #14	CBLC (ENSODEG00000008402) #15	BCAM (ENSODEG00000013187) #16	NECTIN2 (ENSODEG00000008200) #17	ENSODEG00000010615 #18	APOE (ENSODEG00000008747) #19	ENSODEG00000010383 #20	ENSODEG00000011088 #21	APOC2 (ENSODEG00000008478) #22	CLPTM1 (ENSODEG00000008066) #23	RELB (ENSODEG00000008207) #24	CLASRP (ENSODEG00000008407) #25	ZNF296 (ENSODEG00000008238) #26	GEMIN7 (ENSODEG00000009107) #27	PPP1R37 (ENSODEG00000008101) #28	NKPD1 (ENSODEG00000008357) #29	TRAPPC6A (ENSODEG00000008693) #30	EXOC3L2 (ENSODEG00000009155) #31	MARK4 (ENSODEG00000012545) #32	CKM (ENSODEG00000008279) #33	KLC3 (ENSODEG00000009706) #34	ERCC2 (ENSODEG00000008340) #35	PPP1R13L (ENSODEG00000008375) #36	POLR1G (ENSODEG00000007587) #37
Long-tailed chinchilla	MODERN SPECIES	262	ZNF45 (ENSCLAG00000002994)	ZNF226 (ENSCLAG00000003065)	ZNF227 (ENSCLAG00000003244)	ZNF112 (ENSCLAG00000003483) #9	ZNF180 (ENSCLAG00000003922) #10	CEACAM20 (ENSCLAG00000004118) ##12	CEACAM19 (ENSCLAG00000004658) #12	BCL3 (ENSCLAG00000005552) #14	CEACAM16 (ENSCLAG00000006180) #13	CBLC (ENSCLAG00000006275) #15	BCAM (ENSCLAG00000001205) #16	ENSCLAG00000001250 #17	TOMM40 (ENSCLAG00000001305) #18	APOE (ENSCLAG00000001528) #19	ENSCLAG00000001127	APOC2 (ENSCLAG00000001142) #22	ENSCLAG00000001239 #21	CLPTM1 (ENSCLAG00000001254) #23	RELB (ENSCLAG00000001435) #24	CLASRP (ENSCLAG00000002206) #25	ZNF296 (ENSCLAG00000002406) #26	PPP1R37 (ENSCLAG00000002455) #28	NKPD1 (ENSCLAG00000002500) #29	TRAPPC6A (ENSCLAG00000002688) #30	BLOC1S3 (ENSCLAG00000002758)	ENSCLAG00000001896	EXOC3L2 (ENSCLAG00000002073) #31	MARK4 (ENSCLAG00000002104) #32	CKM (ENSCLAG00000002240) #33	KLC3 (ENSCLAG00000002431) #34	ERCC2 (ENSCLAG00000002595) #35
Guinea pig	MODERN SPECIES	80	ZNF226 (ENSCPOG00000040740)	ZNF235 (ENSCPOG00000039731) #7	ZNF112 (ENSCPOG00000035016) #9	ZNF180 (ENSCPOG00000034649) #10	ENSCPOG00000006369	ENSCPOG00000026521	CEACAM16 (ENSCPOG00000020065) #13	BCL3 (ENSCPOG00000015728) #14	CBLC (ENSCPOG00000001085) #15	BCAM (ENSCPOG00000013570) #16	NECTIN2 (ENSCPOG00000039888) #17	TOMM40 (ENSCPOG00000020146) #18	APOE (ENSCPOG00000007235) #19	APOC1 (ENSCPOG00000021989) #20	ENSCPOG00000009300 #21	APOC2 (ENSCPOG00000009302) #22	CLPTM1 (ENSCPOG00000010264) #23	RELB (ENSCPOG00000010273) #24	CLASRP (ENSCPOG00000010282) #25	ZNF296 (ENSCPOG00000010291) #26	GEMIN7 (ENSCPOG00000037844) #27	PPP1R37 (ENSCPOG00000006371) #28	NKPD1 (ENSCPOG00000026614) #29	TRAPPC6A (ENSCPOG00000015115) #30	BLOC1S3 (ENSCPOG00000035473)	ENSCPOG00000020516	ENSCPOG00000024355	EXOC3L2 (ENSCPOG00000021579) #31	MARK4 (ENSCPOG00000004117) #32	CKM (ENSCPOG00000019609) #33	ENSCPOG00000039314
Naked mole-rat female	MODERN SPECIES	21	ZNF227 (ENSHGLG00000003367)	ZNF235 (ENSHGLG00000003657) #7	ZNF112 (ENSHGLG00000003877) #9	ZNF180 (ENSHGLG00000003979) #10	CEACAM20 (ENSHGLG00000004190) ##12	ENSHGLG00000032944	CEACAM19 (ENSHGLG00000046771) #12	CEACAM16 (ENSHGLG00000006899) #13	BCL3 (ENSHGLG00000007014) #14	CBLC (ENSHGLG00000008971) #15	BCAM (ENSHGLG00000003389) #16	NECTIN2 (ENSHGLG00000034437) #17	TOMM40 (ENSHGLG00000006959) #18	Apoe (ENSHGLG00000035249) #19	ENSHGLG00000038010 #20	APOC2 (ENSHGLG00000009840) #22	CLPTM1 (ENSHGLG00000013561) #23	RELB (ENSHGLG00000019359) #24	ENSHGLG00000048837	ENSHGLG00000019534 #25	ZNF296 (ENSHGLG00000003326) #26	ENSHGLG00000039471 #27	PPP1R37 (ENSHGLG00000004107) #28	ENSHGLG00000045368 #30	ENSHGLG00000002749	ENSHGLG00000038913	ENSHGLG00000043179	ENSHGLG00000048961	GYS1 (ENSHGLG00000007154)	RUVBL2 (ENSHGLG00000004773)	ENSHGLG00000046480
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00940000162215 #9	ENSGT00940000162315 #10	ENSGT01100000263479.E.h ##12	ENSGT00390000015308	ENSGT00940000162848	ENSGT01100000263479.B #12	ENSGT01100000263479.C #13	ENSGT00940000161392 #14	ENSGT00940000162336 #15	ENSGT00940000161038 #16	ENSGT00940000161167 #17	ENSGT00390000003308.a #18	ENSGT00950000182929.B.b #19	ENSGT00390000011584 #20	ENSGT00390000015914 #21	ENSGT00390000007913 #22	ENSGT00530000063461.B #23	ENSGT00940000160230 #24	ENSGT00940000153892.A #25	ENSGT00940000160667 #26	ENSGT00390000018039 #27	ENSGT00940000157454 #28	ENSGT00650000093443.x #29	ENSGT00390000012948.a #30	ENSGT00390000008756	ENSGT01030000234613.b.b #31	ENSGT00940000159555 #32	ENSGT00950000182772.A.a.a.b #33	ENSGT01030000234877	ENSGT00940000162356 #34	ENSGT00950000182970.C.t #35
Marmotini	ANCESTRAL SPECIES	7	ENSGT00940000162315 #10	ENSGT01100000263479.E.h ##12	ENSGT00960000192303	ENSGT00390000015308	ENSGT00940000162848	ENSGT01100000263479.B #12	ENSGT01100000263479.C #13	ENSGT00940000161392 #14	ENSGT00940000162336 #15	ENSGT00940000161038 #16	ENSGT00940000161167 #17	ENSGT00390000003308.a #18	ENSGT00950000182929.B.b #19	ENSGT00390000011584 #20	ENSGT00390000015914 #21	ENSGT00390000007913 #22	ENSGT00530000063461.B #23	ENSGT00940000160230 #24	ENSGT00940000153892.A #25	ENSGT00940000160667 #26	ENSGT00390000018039 #27	ENSGT00940000157454 #28	ENSGT00650000093443.x #29	ENSGT00390000012948.a #30	ENSGT00390000008756	ENSGT01030000234613.b.b #31	ENSGT00940000159555 #32	ENSGT00950000182772.A.a.a.b #33	ENSGT00940000162356 #34	ENSGT00950000182970.C.t #35	ENSGT00940000160551 #36
Alpin marmot	MODERN SPECIES	45	ZNF112 (ENSMMMG00000016057) #9	ZNF180 (ENSMMMG00000016049) #10	CEACAM20 (ENSMMMG00000016034) ##12	ENSMMMG00000016029	ENSMMMG00000016028	ENSMMMG00000016025	CEACAM19 (ENSMMMG00000015956) #12	CEACAM16 (ENSMMMG00000015947) #13	BCL3 (ENSMMMG00000015919) #14	CBLC (ENSMMMG00000015894) #15	BCAM (ENSMMMG00000014804) #16	NECTIN2 (ENSMMMG00000014773) #17	TOMM40 (ENSMMMG00000014766) #18	ENSMMMG00000014754	APOC1 (ENSMMMG00000014747) #20	ENSMMMG00000014736 #22	CLPTM1 (ENSMMMG00000014731) #23	ENSMMMG00000014707 #24	CLASRP (ENSMMMG00000014675) #25	ZNF296 (ENSMMMG00000014656) #26	GEMIN7 (ENSMMMG00000014641) #27	PPP1R37 (ENSMMMG00000014623) #28	TRAPPC6A (ENSMMMG00000014570) #30	BLOC1S3 (ENSMMMG00000014569)	ENSMMMG00000014559	MARK4 (ENSMMMG00000014510) #32	CKM (ENSMMMG00000014494) #33	KLC3 (ENSMMMG00000014476) #34	ERCC2 (ENSMMMG00000014338) #35	ENSMMMG00000014331 #36	POLR1G (ENSMMMG00000014326) #37
Marmotini_b	ANCESTRAL SPECIES	49	ENSGT00940000162215 #9	ENSGT00940000162315 #10	ENSGT01100000263479.E.h ##12	ENSGT00960000192303	ENSGT00940000162848	ENSGT01100000263479.B #12	ENSGT01100000263479.C #13	ENSGT00940000161392 #14	ENSGT00940000162336 #15	ENSGT00940000161038 #16	ENSGT00940000161167 #17	ENSGT00390000003308.a #18	ENSGT00950000182929.B.b #19	ENSGT00390000011584 #20	ENSGT00390000015914 #21	ENSGT00390000007913 #22	ENSGT00530000063461.B #23	ENSGT00940000160230 #24	ENSGT00940000153892.A #25	ENSGT00940000160667 #26	ENSGT00390000018039 #27	ENSGT00940000157454 #28	ENSGT00650000093443.x #29	ENSGT00390000012948.a #30	ENSGT00390000008756	ENSGT01030000234613.b.b #31	ENSGT00940000159555 #32	ENSGT00950000182772.A.a.a.b #33	ENSGT00940000162356 #34	ENSGT00950000182970.C.t #35	ENSGT00940000160551 #36
Arctic ground squirrel	MODERN SPECIES	297	ZNF112 (ENSUPAG00010021818) #9	ZNF180 (ENSUPAG00010021813) #10	CEACAM20 (ENSUPAG00010021809) ##12	ENSUPAG00010021807	ENSUPAG00010021806	ENSUPAG00010021805 #12	CEACAM16 (ENSUPAG00010021804) #13	BCL3 (ENSUPAG00010021803) #14	CBLC (ENSUPAG00010021801) #15	BCAM (ENSUPAG00010021799) #16	NECTIN2 (ENSUPAG00010021794) #17	TOMM40 (ENSUPAG00010021791) #18	APOE (ENSUPAG00010021788) #19	APOC1 (ENSUPAG00010021785) #20	ENSUPAG00010021784 #21	ENSUPAG00010021782 #22	CLPTM1 (ENSUPAG00010021781) #23	RELB (ENSUPAG00010021774) #24	CLASRP (ENSUPAG00010021771) #25	ZNF296 (ENSUPAG00010021770) #26	GEMIN7 (ENSUPAG00010021768) #27	PPP1R37 (ENSUPAG00010021758) #28	NKPD1 (ENSUPAG00010021755) #29	TRAPPC6A (ENSUPAG00010021751) #30	BLOC1S3 (ENSUPAG00010021749)	EXOC3L2 (ENSUPAG00010021737) #31	MARK4 (ENSUPAG00010021726) #32	CKM (ENSUPAG00010021720) #33	KLC3 (ENSUPAG00010021708) #34	ERCC2 (ENSUPAG00010021698) #35	PPP1R13L (ENSUPAG00010021693) #36
Eurasian red squirrel	MODERN SPECIES	8	ZNF112 (ENSSVLG00005017552) #9	ZNF180 (ENSSVLG00005017606) #10	CEACAM20 (ENSSVLG00005017745) ##12	ENSSVLG00005018458	ENSSVLG00005018540	ENSSVLG00005018734 #12	CEACAM16 (ENSSVLG00005019359) #13	BCL3 (ENSSVLG00005019448) #14	CBLC (ENSSVLG00005019554) #15	BCAM (ENSSVLG00005019699) #16	NECTIN2 (ENSSVLG00005019984) #17	TOMM40 (ENSSVLG00005020079) #18	APOE (ENSSVLG00005020139) #19	ENSSVLG00005020178 #20	ENSSVLG00005020271 #21	APOC2 (ENSSVLG00005020338) #22	CLPTM1 (ENSSVLG00005020445) #23	RELB (ENSSVLG00005020581) #24	CLASRP (ENSSVLG00005020689) #25	ZNF296 (ENSSVLG00005020812) #26	GEMIN7 (ENSSVLG00005020878) #27	PPP1R37 (ENSSVLG00005020898) #28	NKPD1 (ENSSVLG00005020950) #29	TRAPPC6A (ENSSVLG00005020976) #30	BLOC1S3 (ENSSVLG00005021043)	EXOC3L2 (ENSSVLG00005021070) #31	ENSSVLG00005021273 #32	CKM (ENSSVLG00005021360) #33	ENSSVLG00005021426	KLC3 (ENSSVLG00005021449) #34	ERCC2 (ENSSVLG00005021679) #35