Mus	ANCESTRAL SPECIES	12	ENSGT00940000161075 #10	ENSGT00940000155908.b #11	ENSGT00940000154904.b #12	ENSGT00940000164557	ENSGT00940000156296 #13	ENSGT00390000002109 #14	ENSGT00940000156612 #15	ENSGT00390000014577.a #16	ENSGT00390000017736.a #17	ENSGT00940000158731 #18	ENSGT00940000161190 #19	ENSGT00940000162534 #20	ENSGT00800000124303	ENSGT00670000098076	ENSGT00940000160313 #21	ENSGT00940000161053 #22	ENSGT01100000263564.b #23	ENSGT00390000009359.a #24	ENSGT00940000158835 #25	ENSGT00940000162867.b.b #26	ENSGT00940000162867.b.a.c.a.b.a.a ##29	ENSGT00940000162867.a #29	ENSGT00940000162938 #30	ENSGT00940000162400 #31	ENSGT00940000160666 #32	ENSGT00940000155987.b #36	ENSGT00560000078483 #37	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT00940000162495	ENSGT00940000158621
Shrew mouse	MODERN SPECIES	11	Tuba8 (MGP_PahariEiJ_G0022568) #7	Usp18 (MGP_PahariEiJ_G0022569) #8	Slc6a13 (MGP_PahariEiJ_G0022570) #9	Slc6a12 (MGP_PahariEiJ_G0022571) #10	Iqsec3 (MGP_PahariEiJ_G0022572) #11	A2m (MGP_PahariEiJ_G0022573) #12	MGP_PahariEiJ_G0022574 #13	M6pr (MGP_PahariEiJ_G0022575) #14	Phc1 (MGP_PahariEiJ_G0022576) #15	Rimklb (MGP_PahariEiJ_G0022577) #16	Mfap5 (MGP_PahariEiJ_G0022578) #17	Aicda (MGP_PahariEiJ_G0022579) #18	MGP_PahariEiJ_G0022580 #19	Gdf3 (MGP_PahariEiJ_G0022581) #20	Slc2a3 (MGP_PahariEiJ_G0022582) #21	Foxj2 (MGP_PahariEiJ_G0022583) #22	C3ar1 (MGP_PahariEiJ_G0022584) #23	Necap1 (MGP_PahariEiJ_G0022585) #24	Clec4a1 (MGP_PahariEiJ_G0022586) #25	Clec4a3 (MGP_PahariEiJ_G0022587) #26	Clec4a4 (MGP_PahariEiJ_G0022588) #27	MGP_PahariEiJ_G0022589 #28	MGP_PahariEiJ_G0022590 #29	Clec4n (MGP_PahariEiJ_G0022591) #30	Clec4d (MGP_PahariEiJ_G0022592) #31	Clec4e (MGP_PahariEiJ_G0022593) #32	MGP_PahariEiJ_G0022594 #33	MGP_PahariEiJ_G0022595 #34	MGP_PahariEiJ_G0022596 #35	Cd163 (MGP_PahariEiJ_G0022597) #36	MGP_PahariEiJ_G0022598 #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000161075 #10	ENSGT00940000155908.b #11	ENSGT00940000154904.b #12	ENSGT00940000164557	ENSGT00940000156296 #13	ENSGT00390000002109 #14	ENSGT00940000156612 #15	ENSGT00390000014577.a #16	ENSGT00390000017736.a #17	ENSGT00940000158731 #18	ENSGT00940000161190 #19	ENSGT00940000162534 #20	ENSGT00800000124303	ENSGT00670000098076	ENSGT00940000160313 #21	ENSGT00940000161053 #22	ENSGT01100000263564.b #23	ENSGT00390000009359.a #24	ENSGT00940000158835 #25	ENSGT00940000162867.b.b #26	ENSGT00940000162867.b.a.d #27	ENSGT00940000162867.b.a.c.a.a #28	ENSGT00940000162867.b.a.c.a.b.a.b ##29	ENSGT00940000162938 #30	ENSGT00940000162400 #31	ENSGT00940000160666 #32	ENSGT00940000155987.b.v #36	ENSGT00560000078483 #37	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT00940000162495
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000154904.b #12	ENSGT00940000164557.e.a.b	ENSGT00940000164557.e.a.a	ENSGT00940000164557.e.b	ENSGT00940000156296 #13	ENSGT00390000002109 #14	ENSGT00940000156612 #15	ENSGT00390000014577.a #16	ENSGT00390000017736.a #17	ENSGT00940000158731 #18	ENSGT00940000161190 #19	ENSGT00940000162534 #20	ENSGT00800000124303.r	ENSGT00670000098076	ENSGT00940000160313 #21	ENSGT00940000161053 #22	ENSGT01100000263564.b #23	ENSGT00390000009359.a #24	ENSGT00940000158835 #25	ENSGT00940000162867.b.b #26	ENSGT00940000162867.b.a.d #27	ENSGT00940000162867.b.a.c.a.a #28	ENSGT00940000162867.b.a.c.a.b.a.b ##29	ENSGT00940000162938 #30	ENSGT00940000162400 #31	ENSGT00940000160666 #32	ENSGT00940000163606.b #33	ENSGT00940000163606.a.b.a.a.a #34	ENSGT00940000163606.a.b.a.b #35	ENSGT00940000155987.b.v #36	ENSGT00560000078483 #37
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000154904.b #12	ENSGT00940000164557.e.a.b	ENSGT00940000164557.e.a.a	ENSGT00940000164557.e.b	ENSGT00940000156296 #13	ENSGT00390000002109 #14	ENSGT00940000156612 #15	ENSGT00390000014577.a #16	ENSGT00390000017736.a #17	ENSGT00940000158731 #18	ENSGT00940000161190 #19	ENSGT00940000162534 #20	ENSGT00800000124303.r	ENSGT00670000098076	ENSGT00940000160313 #21	ENSGT00940000161053 #22	ENSGT01100000263564.b #23	ENSGT00390000009359.a #24	ENSGT00940000158835 #25	ENSGT00940000162867.b.b #26	ENSGT00940000162867.b.a.d #27	ENSGT00940000162867.b.a.c.a.a #28	ENSGT00940000162867.b.a.c.a.b.a.b ##29	ENSGT00940000162938 #30	ENSGT00940000162400 #31	ENSGT00940000160666 #32	ENSGT00940000163606.a.b.b.a ##35	ENSGT00940000163606.a.b.b.b ##35	ENSGT00940000163606.a.a ##35	ENSGT00940000163606.a.b.a.a.a #34	ENSGT00940000163606.a.b.a.b #35
Steppe mouse	MODERN SPECIES	2839	ENSMSIG00000029266	M6pr (ENSMSIG00000029265) #14	Phc1 (ENSMSIG00000029054) #15	ENSMSIG00000029048	ENSMSIG00000029043	Rimklb (ENSMSIG00000029039) #16	Mfap5 (ENSMSIG00000028987) #17	Aicda (ENSMSIG00000028977) #18	ENSMSIG00000028972	Apobec1 (ENSMSIG00000028960) #19	Gdf3 (ENSMSIG00000028955) #20	ENSMSIG00000028942	ENSMSIG00000028938	ENSMSIG00000028935	Slc2a3 (ENSMSIG00000028910) #21	Foxj2 (ENSMSIG00000028893) #22	C3ar1 (ENSMSIG00000028890) #23	Necap1 (ENSMSIG00000028885) #24	Clec4a1 (ENSMSIG00000028871) #25	Clec4a3 (ENSMSIG00000028862) #26	Clec4b1 (ENSMSIG00000028845) ##29
spretus	MODERN SPECIES	15	Usp18 (MGP_SPRETEiJ_G0029846) #8	Slc6a13 (MGP_SPRETEiJ_G0029847) #9	Slc6a12 (MGP_SPRETEiJ_G0029848) #10	Iqsec3 (MGP_SPRETEiJ_G0029849) #11	A2m (MGP_SPRETEiJ_G0029850) #12	M6pr (MGP_SPRETEiJ_G0029852) #14	Phc1 (MGP_SPRETEiJ_G0029853) #15	Rimklb (MGP_SPRETEiJ_G0029854) #16	Mfap5 (MGP_SPRETEiJ_G0029855) #17	Aicda (MGP_SPRETEiJ_G0029856) #18	Apobec1 (MGP_SPRETEiJ_G0029857) #19	Gdf3 (MGP_SPRETEiJ_G0029858) #20	Dppa3 (MGP_SPRETEiJ_G0029859)	MGP_SPRETEiJ_G0029860	Slc2a3 (MGP_SPRETEiJ_G0029861) #21	Foxj2 (MGP_SPRETEiJ_G0029862) #22	C3ar1 (MGP_SPRETEiJ_G0029863) #23	Necap1 (MGP_SPRETEiJ_G0029864) #24	Clec4a1 (MGP_SPRETEiJ_G0029865) #25	Clec4a3 (MGP_SPRETEiJ_G0029866) #26	Clec4a4 (MGP_SPRETEiJ_G0029867) #27	Clec4a2 (MGP_SPRETEiJ_G0029868) #28	MGP_SPRETEiJ_G0029869 ##29	Clec4b2 (MGP_SPRETEiJ_G0029870) ##29	Clec4n (MGP_SPRETEiJ_G0029871) #30	Clec4d (MGP_SPRETEiJ_G0029872) #31	Clec4e (MGP_SPRETEiJ_G0029873) #32	MGP_SPRETEiJ_G0029874 #33	MGP_SPRETEiJ_G0029875 ##35	MGP_SPRETEiJ_G0029876 #34	MGP_SPRETEiJ_G0029877 #35
Mouse	MODERN SPECIES	15	A2m (ENSMUSG00000030111) #12	Gm7298 (ENSMUSG00000108022)	Mug1 (ENSMUSG00000059908)	Mug2 (ENSMUSG00000030131)	Klrg1 (ENSMUSG00000030114) #13	M6pr (ENSMUSG00000007458) #14	Phc1 (ENSMUSG00000040669) #15	Rimklb (ENSMUSG00000040649) #16	Mfap5 (ENSMUSG00000030116) #17	Aicda (ENSMUSG00000040627) #18	Apobec1 (ENSMUSG00000040613) #19	Gdf3 (ENSMUSG00000030117) #20	Dppa3 (ENSMUSG00000046323)	Nanog (ENSMUSG00000012396)	Slc2a3 (ENSMUSG00000003153) #21	Foxj2 (ENSMUSG00000003154) #22	C3ar1 (ENSMUSG00000040552) #23	Necap1 (ENSMUSG00000030327) #24	Clec4a1 (ENSMUSG00000049037) #25	Clec4a3 (ENSMUSG00000043832) #26	Clec4a4 (ENSMUSG00000059639) #27	Clec4b1 (ENSMUSG00000030147) ##29	Clec4a2 (ENSMUSG00000030148) #28	Clec4b2 (ENSMUSG00000067767) ##29	Clec4n (ENSMUSG00000023349) #30	Clec4d (ENSMUSG00000030144) #31	Clec4e (ENSMUSG00000030142) #32	Vmn2r19 (ENSMUSG00000091260) ##35	Vmn2r20 (ENSMUSG00000094145) ##35	Vmn2r21 (ENSMUSG00000093820) ##35	Vmn2r22 (ENSMUSG00000095486) ##35
Ryukyu mouse	MODERN SPECIES	15	MGP_CAROLIEiJ_G0028810	Pex26 (MGP_CAROLIEiJ_G0028811)	Tuba8 (MGP_CAROLIEiJ_G0028812) #7	Usp18 (MGP_CAROLIEiJ_G0028813) #8	Slc6a13 (MGP_CAROLIEiJ_G0028814) #9	MGP_CAROLIEiJ_G0028815 #10	Iqsec3 (MGP_CAROLIEiJ_G0028816) #11	Klrg1 (MGP_CAROLIEiJ_G0028819) #13	M6pr (MGP_CAROLIEiJ_G0028820) #14	Phc1 (MGP_CAROLIEiJ_G0028821) #15	Rimklb (MGP_CAROLIEiJ_G0028822) #16	MGP_CAROLIEiJ_G0028823 #17	MGP_CAROLIEiJ_G0028824 #18	MGP_CAROLIEiJ_G0028825 #19	Slc2a3 (MGP_CAROLIEiJ_G0028827) #21	MGP_CAROLIEiJ_G0028828 #22	C3ar1 (MGP_CAROLIEiJ_G0028829) #23	Necap1 (MGP_CAROLIEiJ_G0028830) #24	Clec4a3 (MGP_CAROLIEiJ_G0028831) #26	Clec4a4 (MGP_CAROLIEiJ_G0028832) #27	Clec4a2 (MGP_CAROLIEiJ_G0028833) #28	MGP_CAROLIEiJ_G0028834 ##29	MGP_CAROLIEiJ_G0028835 ##29	MGP_CAROLIEiJ_G0028836 #30	Clec4d (MGP_CAROLIEiJ_G0028837) #31	MGP_CAROLIEiJ_G0028838 #32	Cd163 (MGP_CAROLIEiJ_G0028839) #36	MGP_CAROLIEiJ_G0028840 #37	MGP_CAROLIEiJ_G0028842	Lpcat3 (MGP_CAROLIEiJ_G0028843)	Emg1 (MGP_CAROLIEiJ_G0028844)