Rodentia_B	ANCESTRAL SPECIES	3	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b	ENSGT01100000263494.a.a.a.a.a.c.a	ENSGT01100000263494.a.a.a.a.a.d.a	ENSGT01100000263494.a.a.a.a.a.d.b.c	ENSGT00940000160217	ENSGT00940000160763	ENSGT00520000060242	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000163816	ENSGT00940000156784	ENSGT00940000158061	ENSGT00940000160876	ENSGT00940000161671 #22	ENSGT00390000004405.a.n	ENSGT00950000182892.a.a.a	ENSGT00950000183123.g.a.b.b	ENSGT00940000158801	ENSGT00390000004897	ENSGT00940000160794	ENSGT00940000161023	ENSGT00940000159254	ENSGT00940000161194	ENSGT00940000160866	ENSGT00940000160855	ENSGT00940000160009	ENSGT00940000161307	ENSGT00940000161087	ENSGT00950000183025.b.b
Myomorpha	ANCESTRAL SPECIES	2	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b	ENSGT01100000263494.a.a.a.a.a.c.a	ENSGT01100000263494.a.a.a.a.a.d.a	ENSGT01100000263494.a.a.a.a.a.d.b.c	ENSGT00940000160217	ENSGT00940000160763	ENSGT00520000060242	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000163816	ENSGT00940000156784	ENSGT00940000158061	ENSGT00940000160876	ENSGT00940000161671 #22	ENSGT00390000004405.a.n	ENSGT00950000182892.a.a.a	ENSGT00950000183123.g.a.b.b	ENSGT00940000158801	ENSGT00390000004897	ENSGT00940000160794	ENSGT00940000161023	ENSGT00940000159254	ENSGT00940000161194	ENSGT00940000160866	ENSGT00940000160855	ENSGT00940000160009	ENSGT00940000161307	ENSGT00940000161087	ENSGT00950000183025.b.b
Muroidea	ANCESTRAL SPECIES	31								ENSGT00520000060242	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000163816	ENSGT00940000156784	ENSGT00940000158061	ENSGT00940000160876	ENSGT00940000161671 #22	ENSGT00390000004405.a.n	ENSGT00950000182892.a.a.a	ENSGT00950000183123.g.a.b.b	ENSGT00940000158801	ENSGT00390000004897	ENSGT00940000160794	ENSGT00940000161023	ENSGT00940000159254	ENSGT00940000161194	ENSGT00940000160866	ENSGT00940000160855	ENSGT00940000160009	ENSGT00940000161307	ENSGT00940000161087	ENSGT00950000183025.b.b
Muroidea_A	ANCESTRAL SPECIES	9								ENSGT00520000060242	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000163816	ENSGT00940000156784	ENSGT00940000158061	ENSGT00940000160876	ENSGT00940000161671 #22	ENSGT00390000004405.a.n	ENSGT00950000182892.a.a.a	ENSGT00950000183123.g.a.b.b	ENSGT00940000158801	ENSGT00390000004897	ENSGT00940000160794	ENSGT00940000161023	ENSGT00940000159254	ENSGT00940000161194	ENSGT00940000160866	ENSGT00940000160855	ENSGT00940000160009	ENSGT00940000161307	ENSGT00940000161087	ENSGT00950000183025.b.b
Murinae	ANCESTRAL SPECIES	10							ENSGT00530000067283	ENSGT00520000060242	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000163816	ENSGT00940000156784	ENSGT00940000158061	ENSGT00940000160876	ENSGT00940000161671 #22	ENSGT00390000004405.a.n	ENSGT00950000182892.a.a.a	ENSGT00950000183123.g.a.b.b	ENSGT00940000158801	ENSGT00390000004897	ENSGT00940000160794	ENSGT00940000161023	ENSGT00940000159254	ENSGT00940000161194	ENSGT00940000160866	ENSGT00940000160855	ENSGT00940000160009	ENSGT00940000161307	ENSGT00940000161087	ENSGT00950000183025.b.b
Rat	DUPLICATION
Rat	MODERN SPECIES	46	Capn6 (ENSRNOG00000004882) #7	Dcx (ENSRNOG00000047712) #8	LOC108349189 (ENSRNOG00000067072) #9	AABR07040944.1 (ENSRNOG00000005430) #10	LOC100361756 (ENSRNOG00000051310) #11	LOC100361854 (ENSRNOG00000029512) #12	Alg13 (ENSRNOG00000065758) #13	LOC108349244 (ENSRNOG00000005753) #14	Trpc5 (ENSRNOG00000027233) #15	Trpc5os (ENSRNOG00000064383) #16	Rtl4 (ENSRNOG00000031638) #17	Lhfpl1 (ENSRNOG00000027601) #18	Amot (ENSRNOG00000007345) #19	ENSRNOG00000065631 #20	ENSRNOG00000065464 #21	Htr2c (ENSRNOG00000030877) #22	Il13ra2 (ENSRNOG00000032973) #23	Lrch2 (ENSRNOG00000029582) #24	Luzp4 (ENSRNOG00000069107) #25	AABR07041089.1 (ENSRNOG00000018923) #26	Pls3 (ENSRNOG00000027520) #27	ENSRNOG00000067242 #28	AABR07041109.1 (ENSRNOG00000050465) #29	Agtr2 (ENSRNOG00000050006) #30	Slc6a14 (ENSRNOG00000005687) #31	ENSRNOG00000068085 #32	Ppp1r2-ps2 (ENSRNOG00000064591) #33	AABR07041140.1 (ENSRNOG00000006459) #34	Sec61g-ps4 (ENSRNOG00000061620) #35	Klhl13 (ENSRNOG00000014029) #36	Wdr44 (ENSRNOG00000029068) #37
Rat	MODERN SPECIES	17				Spt1 (ENSRNOG00000066132)	ENSRNOG00000067257	LOC102555445 (ENSRNOG00000064464)	ENSRNOG00000071048	Glycam1 (ENSRNOG00000036826)	Ppp1r1a (ENSRNOG00000036827)	Pde1b (ENSRNOG00000036828)	Nckap1l (ENSRNOG00000036829)	Gtsf2 (ENSRNOG00000036830)	Gtsf1 (ENSRNOG00000036831)	Itga5 (ENSRNOG00000057451)	Zfp385a (ENSRNOG00000036833)	Gpr84 (ENSRNOG00000036834) ##22	Copz1 (ENSRNOG00000036835)	AABR07058937.1 (ENSRNOG00000036836)	Nfe2 (ENSRNOG00000036837)	Hnrnpa1 (ENSRNOG00000036839)	Cbx5 (ENSRNOG00000036841)	Smug1 (ENSRNOG00000036842)	Hoxc4 (ENSRNOG00000016613)	Hoxc5 (ENSRNOG00000016598)	Hoxc6 (ENSRNOG00000063956)	Hoxc8 (ENSRNOG00000028619)	Hoxc9 (ENSRNOG00000016199)	Hoxc10 (ENSRNOG00000016149)	Hoxc11 (ENSRNOG00000016141)	Hoxc12 (ENSRNOG00000016116)	Hoxc13 (ENSRNOG00000028679)
Cricetidae	ANCESTRAL SPECIES	10								ENSGT00520000060242	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000163816.a	ENSGT00940000156784	ENSGT00940000158061	ENSGT00940000160876	ENSGT00940000161671 #22	ENSGT00390000004405.a.n	ENSGT00950000182892.a.a.a	ENSGT00950000183123.g.a.b.b	ENSGT00940000158801	ENSGT00390000004897	ENSGT00940000160794	ENSGT00940000161023	ENSGT00940000159254	ENSGT00940000161194	ENSGT00940000160866	ENSGT00940000160855	ENSGT00940000160009	ENSGT00940000161307	ENSGT00940000161087	ENSGT00950000183025.b.b
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000159229	ENSGT00510000048601.b	ENSGT00510000048601.a	ENSGT00940000158318	ENSGT00940000162655	ENSGT00940000156596	ENSGT00390000014623	ENSGT00520000060242	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000163816.a	ENSGT00940000156784	ENSGT00940000158061	ENSGT00940000160876	ENSGT00940000161671 #22	ENSGT00390000004405.a.n	ENSGT00950000182892.a.a.a	ENSGT00950000183123.g.a.b.b	ENSGT00940000158801	ENSGT00390000004897	ENSGT00940000160794	ENSGT00940000161023	ENSGT00940000159254	ENSGT00940000161194	ENSGT00940000160866	ENSGT00940000160855	ENSGT00940000160009	ENSGT00940000161307	ENSGT00940000161087	ENSGT00950000183025.b.b
Chinese hamster chok1gshd	MODERN SPECIES	1	Ercc5 (ENSCGRG00001015414)	Bivm (ENSCGRG00001013666)	Poglut2 (ENSCGRG00001016741)	Tex30 (ENSCGRG00001013834)	Mettl21c (ENSCGRG00001014510)	Tpp2 (ENSCGRG00001014893)	ENSCGRG00001009407	Glycam1 (ENSCGRG00001016454)	Ppp1r1a (ENSCGRG00001013456)	Pde1b (ENSCGRG00001017137)	Nckap1l (ENSCGRG00001014386)	Gtsf2 (ENSCGRG00001016136)	Gtsf1 (ENSCGRG00001013814)	Itga5 (ENSCGRG00001017691)	Zfp385a (ENSCGRG00001015539)	ENSCGRG00001009425 #22	Copz1 (ENSCGRG00001013501)	Nfe2 (ENSCGRG00001022465)	Hnrnpa1 (ENSCGRG00001013129)	Cbx5 (ENSCGRG00001019018)	Smug1 (ENSCGRG00001016146)	Hoxc4 (ENSCGRG00001013095)	Hoxc5 (ENSCGRG00001012661)	Hoxc6 (ENSCGRG00001014416)	Hoxc8 (ENSCGRG00001014315)	Hoxc9 (ENSCGRG00001013912)	Hoxc10 (ENSCGRG00001013473)	Hoxc11 (ENSCGRG00001013516)	Hoxc12 (ENSCGRG00001014493)	Hoxc13 (ENSCGRG00001013867)	Calcoco1 (ENSCGRG00001014119)
Golden Hamster	MODERN SPECIES	626		Mettl21e (ENSMAUG00000019422)	Ercc5 (ENSMAUG00000019200)	Bivm (ENSMAUG00000017423)	Poglut2 (ENSMAUG00000016318)	Tex30 (ENSMAUG00000016083)	Mettl21c (ENSMAUG00000020274)	Tpp2 (ENSMAUG00000019359)	Ppp1r1a (ENSMAUG00000018584)	Pde1b (ENSMAUG00000019170)	Nckap1l (ENSMAUG00000018822)	ENSMAUG00000017189	Gtsf1 (ENSMAUG00000018746)	Itga5 (ENSMAUG00000017255)	Zfp385a (ENSMAUG00000015687)	ENSMAUG00000010848 #22	ENSMAUG00000020778	Nfe2 (ENSMAUG00000020513)	Hnrnpa1 (ENSMAUG00000019184)	Cbx5 (ENSMAUG00000018962)	Smug1 (ENSMAUG00000018792)	Hoxc4 (ENSMAUG00000018883)	Hoxc5 (ENSMAUG00000018873)	Hoxc6 (ENSMAUG00000018788)	Hoxc8 (ENSMAUG00000016196)	Hoxc9 (ENSMAUG00000016070)	Hoxc10 (ENSMAUG00000015971)	Hoxc11 (ENSMAUG00000015214)	Hoxc12 (ENSMAUG00000015132)	Hoxc13 (ENSMAUG00000014990)	Calcoco1 (ENSMAUG00000013934)
Cricetidae_B	ANCESTRAL SPECIES	6								ENSGT00520000060242	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000163816.a	ENSGT00940000156784	ENSGT00940000158061	ENSGT00940000160876	ENSGT00940000161671 #22	ENSGT00390000004405.a.n	ENSGT00950000182892.a.a.a	ENSGT00950000183123.g.a.b.b	ENSGT00940000158801	ENSGT00390000004897	ENSGT00940000160794	ENSGT00940000161023	ENSGT00940000159254	ENSGT00940000161194	ENSGT00940000160866	ENSGT00940000160855	ENSGT00940000160009	ENSGT00940000161307	ENSGT00940000161087	ENSGT00950000183025.b.b
Prairie vole	MODERN SPECIES	2		ENSMOCG00000020011	ENSMOCG00000021250	ENSMOCG00000000524	ENSMOCG00000009952	Glycam1 (ENSMOCG00000020429)	Ppp1r1a (ENSMOCG00000002557)	Pde1b (ENSMOCG00000008136)	ENSMOCG00000014544	ENSMOCG00000011883	Gtsf2 (ENSMOCG00000014770)	Gtsf1 (ENSMOCG00000018889)	ENSMOCG00000010096	Itga5 (ENSMOCG00000021919)	Zfp385a (ENSMOCG00000006959)	ENSMOCG00000011736 #22	Copz1 (ENSMOCG00000018095)	Nfe2 (ENSMOCG00000019128)	Hnrnpa1 (ENSMOCG00000004275)	ENSMOCG00000015075	Smug1 (ENSMOCG00000017727)	Hoxc4 (ENSMOCG00000014873)	Hoxc5 (ENSMOCG00000013422)	Hoxc6 (ENSMOCG00000018874)	Hoxc8 (ENSMOCG00000016249)	Hoxc9 (ENSMOCG00000019623)	Hoxc10 (ENSMOCG00000009084)	Hoxc11 (ENSMOCG00000010091)	Hoxc12 (ENSMOCG00000016790)	Hoxc13 (ENSMOCG00000001084)	Calcoco1 (ENSMOCG00000010205)
Upper Galilee mountains blind mole rat	MODERN SPECIES	441									Ppp1r1a (ENSNGAG00000023027)	Pde1b (ENSNGAG00000020387)	Nckap1l (ENSNGAG00000011702)	Gtsf2 (ENSNGAG00000008752)	Gtsf1 (ENSNGAG00000014213)	Itga5 (ENSNGAG00000013929)	Zfp385a (ENSNGAG00000007963)	ENSNGAG00000004911 #22	Copz1 (ENSNGAG00000000660)	Nfe2 (ENSNGAG00000018088)	Hnrnpa1 (ENSNGAG00000017304)	Cbx5 (ENSNGAG00000016802)	Smug1 (ENSNGAG00000019663)	Hoxc4 (ENSNGAG00000016300)	Hoxc5 (ENSNGAG00000015707)	Hoxc6 (ENSNGAG00000013313)	Hoxc8 (ENSNGAG00000012817)	Hoxc9 (ENSNGAG00000012023)	Hoxc10 (ENSNGAG00000022718)	Hoxc11 (ENSNGAG00000022627)	Hoxc12 (ENSNGAG00000022515)	Hoxc13 (ENSNGAG00000022328)	Calcoco1 (ENSNGAG00000022012)
Lesser Egyptian jerboa	MODERN SPECIES	42	ENSJJAG00000017295	Or10p1 (ENSJJAG00000001285)	ENSJJAG00000024368	Or6c65 (ENSJJAG00000010883)	Neurod4 (ENSJJAG00000001645)	Tespa1 (ENSJJAG00000017390)	Glycam1 (ENSJJAG00000016549)	ENSJJAG00000022930	Pde1b (ENSJJAG00000015140)	ENSJJAG00000011759	ENSJJAG00000016097	Gtsf2 (ENSJJAG00000016320)	ENSJJAG00000003323	Itga5 (ENSJJAG00000013501)	Zfp385a (ENSJJAG00000021761)	ENSJJAG00000001613 #22	Copz1 (ENSJJAG00000021645)	Nfe2 (ENSJJAG00000011311)	Hnrnpa1 (ENSJJAG00000024047)	Cbx5 (ENSJJAG00000016164)	Smug1 (ENSJJAG00000022700)	Hoxc5 (ENSJJAG00000020509)	Hoxc6 (ENSJJAG00000021603)	Hoxc4 (ENSJJAG00000017548)	Hoxc8 (ENSJJAG00000011647)	Hoxc9 (ENSJJAG00000020953)	Hoxc10 (ENSJJAG00000011018)	Hoxc11 (ENSJJAG00000007017)	Hoxc12 (ENSJJAG00000024305)	Hoxc13 (ENSJJAG00000023584)	Calcoco1 (ENSJJAG00000011789)
Kangaroo rat	MODERN SPECIES	474									Ppp1r1a (ENSDORG00000002128)	Pde1b (ENSDORG00000002126)	Nckap1l (ENSDORG00000002123)	Gtsf2 (ENSDORG00000026087)	Gtsf1 (ENSDORG00000003228)	Itga5 (ENSDORG00000008261)	Zfp385a (ENSDORG00000027646)	ENSDORG00000010631 #22	Copz1 (ENSDORG00000010630)	Nfe2 (ENSDORG00000010629)	ENSDORG00000027821	Cbx5 (ENSDORG00000010625)	Smug1 (ENSDORG00000024701)	Hoxc5 (ENSDORG00000006999)	Hoxc6 (ENSDORG00000027256)	Hoxc4 (ENSDORG00000007001)	Hoxc8 (ENSDORG00000023838)	Hoxc9 (ENSDORG00000028578)	Hoxc10 (ENSDORG00000006992)	Hoxc11 (ENSDORG00000006990)	Hoxc12 (ENSDORG00000026466)	Hoxc13 (ENSDORG00000023942)	Calcoco1 (ENSDORG00000002957)