Mus	ANCESTRAL SPECIES	3	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b	ENSGT00940000154171.B #7	ENSGT00520000060291 #8	ENSGT00530000063489.b #10	ENSGT00390000013405 #11	ENSGT00390000014490 #12	ENSGT00390000016496 #13	ENSGT00510000048586 #14	ENSGT00510000048827 #16	ENSGT00940000157867 #17	ENSGT00940000159249 #18	ENSGT00940000153314.a.b.b ##19	ENSGT00510000048612 #20	ENSGT00390000017394 #21	ENSGT00730000111482 #22	ENSGT00390000017213.B #23	ENSGT00940000155229 #24	ENSGT00940000161602 #25	ENSGT00940000160408 #27	ENSGT00940000161888 #28	ENSGT00510000046843.a.b #29	ENSGT00940000153668.A #30	ENSGT00940000161264 #31	ENSGT00940000158981 #32	ENSGT00940000158631 #33	ENSGT00530000063882.a #34	ENSGT00940000162344 #35	ENSGT00860000133842 #37	ENSGT00860000136083	ENSGT00940000155203.d
Mus_A	ANCESTRAL SPECIES	3	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b	ENSGT00940000154171.B #7	ENSGT00520000060291 #8	ENSGT00530000063489.b #10	ENSGT00390000013405 #11	ENSGT00390000014490 #12	ENSGT00390000016496 #13	ENSGT00510000048586 #14	ENSGT00510000048827 #16	ENSGT00940000157867 #17	ENSGT00940000159249 #18	ENSGT00940000153314.a.b.b ##19	ENSGT00510000048612 #20	ENSGT00390000017394 #21	ENSGT00730000111482 #22	ENSGT00390000017213.B #23	ENSGT00940000155229 #24	ENSGT00940000161602 #25	ENSGT00940000160408 #27	ENSGT00940000161888 #28	ENSGT00510000046843.a.b #29	ENSGT00940000153668.A #30	ENSGT00940000161264 #31	ENSGT00940000158981 #32	ENSGT00940000158631 #33	ENSGT00530000063882.a #34	ENSGT00940000162344 #35	ENSGT00860000133842 #37	ENSGT00860000136083	ENSGT00940000155203.d
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b	ENSGT00940000154171.B #7	ENSGT00520000060291 #8	ENSGT00530000063489.b #10	ENSGT00390000013405 #11	ENSGT00390000014490 #12	ENSGT00390000016496 #13	ENSGT00510000048586 #14	ENSGT00510000048827 #16	ENSGT00940000157867 #17	ENSGT00940000159249 #18	ENSGT00940000153314.a.b.b ##19	ENSGT00510000048612 #20	ENSGT00390000017394 #21	ENSGT00730000111482 #22	ENSGT00390000017213.B #23	ENSGT00940000155229 #24	ENSGT00940000161602 #25	ENSGT00940000160408 #27	ENSGT00940000161888 #28	ENSGT00510000046843.a.b #29	ENSGT00940000153668.A #30	ENSGT00940000161264 #31	ENSGT00940000158981 #32	ENSGT00940000158631 #33	ENSGT00530000063882.a #34	ENSGT00940000162344 #35	ENSGT00860000133842 #37	ENSGT00860000136083	ENSGT00940000155203.d
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000003623	ENSGT00950000183153.c.b.a.b	ENSGT00940000154171.B #7	ENSGT00520000060291 #8	ENSGT00530000063489.b #10	ENSGT00390000013405 #11	ENSGT00390000014490 #12	ENSGT00390000016496 #13	ENSGT00510000048586 #14	ENSGT00510000048827 #16	ENSGT00940000157867 #17	ENSGT00940000159249 #18	ENSGT00940000153314.a.b.b ##19	ENSGT00510000048612 #20	ENSGT00390000017394 #21	ENSGT00730000111482 #22	ENSGT00390000017213.B #23	ENSGT00940000155229 #24	ENSGT00940000161602 #25	ENSGT00940000160408 #27	ENSGT00940000161888 #28	ENSGT00510000046843.a.b #29	ENSGT00940000153668.A #30	ENSGT00940000161264 #31	ENSGT00940000158981 #32	ENSGT00940000158631 #33	ENSGT00530000063882.a #34	ENSGT00940000162344 #35	ENSGT00860000133842 #37	ENSGT00860000136083	ENSGT00940000155203.d
Steppe mouse	MODERN SPECIES	3338	Ccdc27 (ENSMSIG00000014782) #7	Smim1 (ENSMSIG00000014746) #8	ENSMSIG00000014737 #9	Lrrc47 (ENSMSIG00000014708) #10	Cep104 (ENSMSIG00000014574) #11	Dffb (ENSMSIG00000014559) #12	A430005L14Rik (ENSMSIG00000014537) #13	Ajap1 (ENSMSIG00000014508) #14	ENSMSIG00000014502 #15	Nphp4 (ENSMSIG00000014454) #16	Kcnab2 (ENSMSIG00000014214) #17	Chd5 (ENSMSIG00000013541) #18	ENSMSIG00000013479 #19	Rnf207 (ENSMSIG00000013431) #20	Icmt (ENSMSIG00000013421) #21	Hes3 (ENSMSIG00000013400) #22	Gpr153 (ENSMSIG00000013382) #23	ENSMSIG00000013211 #24	Hes2 (ENSMSIG00000013192) #25	ENSMSIG00000013166 #26	Espn (ENSMSIG00000012528) #27	Tnfrsf25 (ENSMSIG00000012489) #28	Plekhg5 (ENSMSIG00000011880) #29	Nol9 (ENSMSIG00000011790) #30	Tas1r1 (ENSMSIG00000011771) #31	Zbtb48 (ENSMSIG00000011741) #32	Klhl21 (ENSMSIG00000011725) #33	Phf13 (ENSMSIG00000011718) #34	Thap3 (ENSMSIG00000011700) #35	ENSMSIG00000011686 #36	Dnajc11 (ENSMSIG00000011665) #37
spretus	MODERN SPECIES	13	Wrap73 (MGP_SPRETEiJ_G0027861)	Trp73 (MGP_SPRETEiJ_G0027860)	Ccdc27 (MGP_SPRETEiJ_G0027859) #7	Smim1 (MGP_SPRETEiJ_G0027858) #8	Lrrc47 (MGP_SPRETEiJ_G0027857) #10	Cep104 (MGP_SPRETEiJ_G0027856) #11	Dffb (MGP_SPRETEiJ_G0027855) #12	A430005L14Rik (MGP_SPRETEiJ_G0027854) #13	Ajap1 (MGP_SPRETEiJ_G0027853) #14	Nphp4 (MGP_SPRETEiJ_G0027852) #16	Kcnab2 (MGP_SPRETEiJ_G0027851) #17	Chd5 (MGP_SPRETEiJ_G0027850) #18	Rpl22 (MGP_SPRETEiJ_G0027849) ##19	Rnf207 (MGP_SPRETEiJ_G0027848) #20	Icmt (MGP_SPRETEiJ_G0027847) #21	Hes3 (MGP_SPRETEiJ_G0027846) #22	Gpr153 (MGP_SPRETEiJ_G0027845) #23	Acot7 (MGP_SPRETEiJ_G0027844) #24	Hes2 (MGP_SPRETEiJ_G0027843) #25	MGP_SPRETEiJ_G0027842 #27	Tnfrsf25 (MGP_SPRETEiJ_G0027841) #28	Plekhg5 (MGP_SPRETEiJ_G0027840) #29	Nol9 (MGP_SPRETEiJ_G0027839) #30	Tas1r1 (MGP_SPRETEiJ_G0027838) #31	Zbtb48 (MGP_SPRETEiJ_G0027837) #32	Klhl21 (MGP_SPRETEiJ_G0027836) #33	Phf13 (MGP_SPRETEiJ_G0027835) #34	Thap3 (MGP_SPRETEiJ_G0027834) #35	Dnajc11 (MGP_SPRETEiJ_G0027833) #37	MGP_SPRETEiJ_G0027832	Vamp3 (MGP_SPRETEiJ_G0027831)
Mouse	MODERN SPECIES	13	Wrap73 (ENSMUSG00000029029)	Trp73 (ENSMUSG00000029026)	Ccdc27 (ENSMUSG00000039492) #7	Smim1 (ENSMUSG00000078350) #8	Lrrc47 (ENSMUSG00000029028) #10	Cep104 (ENSMUSG00000039523) #11	Dffb (ENSMUSG00000029027) #12	A430005L14Rik (ENSMUSG00000047613) #13	Ajap1 (ENSMUSG00000039546) #14	Nphp4 (ENSMUSG00000039577) #16	Kcnab2 (ENSMUSG00000028931) #17	Chd5 (ENSMUSG00000005045) #18	Rpl22 (ENSMUSG00000028936) ##19	Rnf207 (ENSMUSG00000058498) #20	Icmt (ENSMUSG00000039662) #21	Hes3 (ENSMUSG00000028946) #22	Gpr153 (ENSMUSG00000042804) #23	Acot7 (ENSMUSG00000028937) #24	Hes2 (ENSMUSG00000028940) #25	Espn (ENSMUSG00000028943) #27	Tnfrsf25 (ENSMUSG00000024793) #28	Plekhg5 (ENSMUSG00000039713) #29	Nol9 (ENSMUSG00000028948) #30	Tas1r1 (ENSMUSG00000028950) #31	Zbtb48 (ENSMUSG00000028952) #32	Klhl21 (ENSMUSG00000073700) #33	Phf13 (ENSMUSG00000047777) #34	Thap3 (ENSMUSG00000039759) #35	Dnajc11 (ENSMUSG00000039768) #37	Vamp3 (ENSMUSG00000028955)	Per3 (ENSMUSG00000028957)
Ryukyu mouse	MODERN SPECIES	13	Wrap73 (MGP_CAROLIEiJ_G0026868)	Trp73 (MGP_CAROLIEiJ_G0026867)	Ccdc27 (MGP_CAROLIEiJ_G0026866) #7	Smim1 (MGP_CAROLIEiJ_G0026865) #8	Lrrc47 (MGP_CAROLIEiJ_G0026864) #10	Cep104 (MGP_CAROLIEiJ_G0026863) #11	Dffb (MGP_CAROLIEiJ_G0026862) #12	A430005L14Rik (MGP_CAROLIEiJ_G0026861) #13	Ajap1 (MGP_CAROLIEiJ_G0026860) #14	Nphp4 (MGP_CAROLIEiJ_G0026859) #16	Kcnab2 (MGP_CAROLIEiJ_G0026858) #17	Chd5 (MGP_CAROLIEiJ_G0026857) #18	Rpl22 (MGP_CAROLIEiJ_G0026856) ##19	Rnf207 (MGP_CAROLIEiJ_G0026855) #20	Icmt (MGP_CAROLIEiJ_G0026854) #21	Hes3 (MGP_CAROLIEiJ_G0026853) #22	Gpr153 (MGP_CAROLIEiJ_G0026852) #23	Acot7 (MGP_CAROLIEiJ_G0026851) #24	Hes2 (MGP_CAROLIEiJ_G0026850) #25	MGP_CAROLIEiJ_G0026849 #27	Tnfrsf25 (MGP_CAROLIEiJ_G0026848) #28	Plekhg5 (MGP_CAROLIEiJ_G0026847) #29	Nol9 (MGP_CAROLIEiJ_G0026846) #30	Tas1r1 (MGP_CAROLIEiJ_G0026845) #31	Zbtb48 (MGP_CAROLIEiJ_G0026844) #32	Klhl21 (MGP_CAROLIEiJ_G0026843) #33	Phf13 (MGP_CAROLIEiJ_G0026842) #34	Thap3 (MGP_CAROLIEiJ_G0026841) #35	Dnajc11 (MGP_CAROLIEiJ_G0026840) #37	MGP_CAROLIEiJ_G0026839	Vamp3 (MGP_CAROLIEiJ_G0026838)
Shrew mouse	MODERN SPECIES	19	Wrap73 (MGP_PahariEiJ_G0029216)	Trp73 (MGP_PahariEiJ_G0029215)	Ccdc27 (MGP_PahariEiJ_G0029214) #7	Smim1 (MGP_PahariEiJ_G0029213) #8	Lrrc47 (MGP_PahariEiJ_G0029212) #10	Cep104 (MGP_PahariEiJ_G0029211) #11	Dffb (MGP_PahariEiJ_G0029210) #12	A430005L14Rik (MGP_PahariEiJ_G0029209) #13	Ajap1 (MGP_PahariEiJ_G0029208) #14	Nphp4 (MGP_PahariEiJ_G0029207) #16	MGP_PahariEiJ_G0029206 #17	Chd5 (MGP_PahariEiJ_G0029205) #18	Rpl22 (MGP_PahariEiJ_G0029204) ##19	Rnf207 (MGP_PahariEiJ_G0029203) #20	Icmt (MGP_PahariEiJ_G0029202) #21	Hes3 (MGP_PahariEiJ_G0029201) #22	Gpr153 (MGP_PahariEiJ_G0029200) #23	Acot7 (MGP_PahariEiJ_G0029199) #24	Hes2 (MGP_PahariEiJ_G0029198) #25	MGP_PahariEiJ_G0029197 #27	Tnfrsf25 (MGP_PahariEiJ_G0029196) #28	Plekhg5 (MGP_PahariEiJ_G0029195) #29	Nol9 (MGP_PahariEiJ_G0029194) #30	Tas1r1 (MGP_PahariEiJ_G0029193) #31	Zbtb48 (MGP_PahariEiJ_G0029192) #32	Klhl21 (MGP_PahariEiJ_G0029191) #33	Phf13 (MGP_PahariEiJ_G0029190) #34	Thap3 (MGP_PahariEiJ_G0029189) #35	Dnajc11 (MGP_PahariEiJ_G0029188) #37	MGP_PahariEiJ_G0029187	Vamp3 (MGP_PahariEiJ_G0029186)