Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00940000159382 #22
Tetrapoda	ANCESTRAL SPECIES	21	ENSGT00390000012959.a	ENSGT00940000156331	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT00390000014792 #7	ENSGT00390000015789.c #8	ENSGT00950000182969.B.c.a.a.c	ENSGT00940000155258 #13	ENSGT00940000154403 #14	ENSGT00950000183311 #15	ENSGT00940000161311 #16	ENSGT00940000161077	ENSGT00950000182969.B.d	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000165938	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37
Amniota	ANCESTRAL SPECIES	14	ENSGT00390000012959.a	ENSGT00940000156331	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT00390000014792 #7	ENSGT00390000015789.c #8	ENSGT00950000182969.B.c.a.a.c	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000154403.a.a #14	ENSGT00950000183311 #15	ENSGT00940000161311 #16	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000165938	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35
Mammalia	ANCESTRAL SPECIES	12	ENSGT00940000162088 #19	ENSGT00940000153980 #21	ENSGT00940000163841 #20	ENSGT00940000154403.a.a #14	ENSGT00950000183311 #15	ENSGT00940000161311 #16	ENSGT00940000156135	ENSGT00940000159486	ENSGT00940000163931	ENSGT00940000160295	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000161994	ENSGT00940000161950 #23	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35
Theria	ANCESTRAL SPECIES	9	ENSGT00940000162088 #19	ENSGT00940000163841 #20	ENSGT00940000153980 #21	ENSGT00950000183407	ENSGT00940000159486	ENSGT00940000163931	ENSGT00940000155433	ENSGT00940000162736	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000156135	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000163931	ENSGT00940000155433	ENSGT00940000162736	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT01100000265611	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000163975	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT01100000265611	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000163975	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00940000164263	ENSGT00940000163931	ENSGT00940000159486	ENSGT00940000154448.b.b.b.b	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00940000159486.ab	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160443	ENSGT00940000160295	ENSGT00390000001157.A.b	ENSGT00940000162756	ENSGT00730000111539	ENSGT00390000001157.A.a	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00940000155433	ENSGT00940000162736	ENSGT00940000160443	ENSGT00940000160295	ENSGT00390000001157.A.b	ENSGT00940000162756	ENSGT00730000111539	ENSGT00730000111511	ENSGT00390000001157.A.a	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486.ab	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160443	ENSGT00940000160295	ENSGT00940000162756	ENSGT00730000111539	ENSGT00390000001157.A.a	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Cetacea	ANCESTRAL SPECIES	5	ENSGT00940000161991 #18	ENSGT00940000162088 #19	ENSGT00940000153980.t ##21	ENSGT00940000163841 #20	ENSGT00940000153980.s #21	ENSGT00940000159486.ab	ENSGT00940000162736	ENSGT00940000160295	ENSGT00390000001157.A.a	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000161950 #23	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00940000155258.t #13	ENSGT00940000154403.a.a #14	ENSGT00940000154403.a.b ##14	ENSGT00940000161311 #16	ENSGT00940000161787 #17	ENSGT00940000161991 #18	ENSGT00940000163841 #20	ENSGT00940000153980.s #21	ENSGT00940000160295	ENSGT00390000001157.A.a	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162088 #19	ENSGT00940000153980.t ##21	ENSGT00940000159382 #22	ENSGT00940000161950 #23	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00390000015789.c.a.b #8	ENSGT00940000163247 #9	ENSGT00940000160681.C #10	ENSGT00940000154602.b #11	ENSGT00940000154602.a ##11	ENSGT00940000155258.t #13	ENSGT00940000154403.a.a #14	ENSGT00940000154403.a.b ##14	ENSGT00940000161311 #16	ENSGT00940000161787 #17	ENSGT00940000161991 #18	ENSGT00940000162088 #19	ENSGT00940000153980.t ##21	ENSGT00940000163841 #20	ENSGT00940000153980.s #21	ENSGT00940000159382 #22	ENSGT00940000161950 #23	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00940000163247 #9	ENSGT00940000154602.b #11	ENSGT00940000160681.C #10	ENSGT00940000154602.a ##11	ENSGT00940000155258.t #13	ENSGT00940000154403.a.a #14	ENSGT00940000154403.a.b ##14	ENSGT00950000183311 #15	ENSGT00940000161311 #16	ENSGT00940000161787 #17	ENSGT00940000161991 #18	ENSGT00940000162088 #19	ENSGT00940000153980.t ##21	ENSGT00940000163841 #20	ENSGT00940000153980.s #21	ENSGT00940000159382 #22	ENSGT00940000161950 #23	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00390000014792 #7	ENSGT00390000015789.c.a.b #8	ENSGT00940000163247 #9	ENSGT00940000154602.b #11	ENSGT00940000160681.C #10	ENSGT00940000155258.t #13	ENSGT00940000154403.a.a #14	ENSGT00940000154403.a.b ##14	ENSGT00950000183311 #15	ENSGT00940000161311 #16	ENSGT00940000161787 #17	ENSGT00940000161991 #18	ENSGT00940000162088 #19	ENSGT00940000163841 #20	ENSGT00940000153980.s #21	ENSGT00940000159382 #22	ENSGT00940000161950 #23	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37
Narwhal	MODERN SPECIES	316	GAST (ENSMMNG00015017208) #7	EIF1 (ENSMMNG00015017110) #8	ENSMMNG00015017066 #9	ENSMMNG00015017022 #10	KRT16 (ENSMMNG00015016975) #11	ENSMMNG00015016841 #12	KRT19 (ENSMMNG00015016751) #13	KRT15 (ENSMMNG00015016652) #14	KRT13 (ENSMMNG00015016552) #15	KRT36 (ENSMMNG00015016489) #16	KRT35 (ENSMMNG00015016167) #17	KRT32 (ENSMMNG00015016021) #18	ENSMMNG00015015975 #19	ENSMMNG00015020884 #20	ENSMMNG00015020870 #21	KRT12 (ENSMMNG00015020854) #22	ENSMMNG00015020836 #23	KRT24 (ENSMMNG00015020814) #24	KRT222 (ENSMMNG00015020791) #25	ENSMMNG00015020648 #26	CCR7 (ENSMMNG00015020594) #27	TNS4 (ENSMMNG00015020571) #28	IGFBP4 (ENSMMNG00015020546) #29	TOP2A (ENSMMNG00015020530) #30	GJD3 (ENSMMNG00015020507) #31	RARA (ENSMMNG00015020465) #32	CDC6 (ENSMMNG00015020434) #33	WIPF2 (ENSMMNG00015020404) #34	RAPGEFL1 (ENSMMNG00015020323) #35	CASC3 (ENSMMNG00015020273) #36	MSL1 (ENSMMNG00015020237) #37
Beluga whale	MODERN SPECIES	26	P3H4 (ENSDLEG00000010296)	JUP (ENSDLEG00000010325)	HAP1 (ENSDLEG00000010394)	GAST (ENSDLEG00000010409) #7	EIF1 (ENSDLEG00000010424) #8	ENSDLEG00000010442 #9	KRT36 (ENSDLEG00000010471) #10	ENSDLEG00000010541 #11	ENSDLEG00000010559 ##14	KRT15 (ENSDLEG00000010588) #14	ENSDLEG00000010656 ##14	KRT35 (ENSDLEG00000010700) #17	KRT32 (ENSDLEG00000011003) #18	ENSDLEG00000011512 #19	KRT33A (ENSDLEG00000011528) ##21	KRT12 (ENSDLEG00000011548) #22	KRT24 (ENSDLEG00000011564) #24	KRT222 (ENSDLEG00000011592) #25	SMARCE1 (ENSDLEG00000011604) #26	CCR7 (ENSDLEG00000011618) #27	TNS4 (ENSDLEG00000011633) #28	IGFBP4 (ENSDLEG00000011662) #29	TOP2A (ENSDLEG00000011757) #30	GJD3 (ENSDLEG00000013297) #31	RARA (ENSDLEG00000013307) #32	CDC6 (ENSDLEG00000013333) #33	WIPF2 (ENSDLEG00000013388) #34	RAPGEFL1 (ENSDLEG00000013410) #35	CASC3 (ENSDLEG00000013448) #36	MSL1 (ENSDLEG00000013463) #37	NR1D1 (ENSDLEG00000013483)
Vaquita	MODERN SPECIES	12	HAP1 (ENSPSNG00000013642)	GAST (ENSPSNG00000013554) #7	ENSPSNG00000013484 ##8	ENSPSNG00000013387 #9	KRT17 (ENSPSNG00000013207) #10	ENSPSNG00000013136	KRT14 (ENSPSNG00000013111) ##11	KRT19 (ENSPSNG00000013067) #13	KRT15 (ENSPSNG00000012869) #14	KRT13 (ENSPSNG00000012628) #15	KRT36 (ENSPSNG00000012532) #16	KRT35 (ENSPSNG00000012426) #17	ENSPSNG00000012074 #19	ENSPSNG00000011974 #20	ENSPSNG00000011948	KRT12 (ENSPSNG00000011850) #22	KRT222 (ENSPSNG00000011342) #25	ENSPSNG00000011023 #26	CCR7 (ENSPSNG00000010907) #27	TNS4 (ENSPSNG00000010768) #28	IGFBP4 (ENSPSNG00000010715) #29	TOP2A (ENSPSNG00000010629) #30	RARA (ENSPSNG00000010408) #32	CDC6 (ENSPSNG00000010325) #33	RAPGEFL1 (ENSPSNG00000009921) #35	CASC3 (ENSPSNG00000009773) #36	MSL1 (ENSPSNG00000009592) #37	NR1D1 (ENSPSNG00000009539)	THRA (ENSPSNG00000009491)	MED24 (ENSPSNG00000009228)	CSF3 (ENSPSNG00000008991)
Dolphin	MODERN SPECIES	4094																KRT12 (ENSTTRG00000003254) #22
Sperm whale	MODERN SPECIES	5	ENSPCTG00005013413 #9	ENSPCTG00005013296 #11	KRT14 (ENSPCTG00005013034) ##11	KRT19 (ENSPCTG00005012929) #13	KRT15 (ENSPCTG00005012795) #14	KRT13 (ENSPCTG00005012719) ##14	KRT36 (ENSPCTG00005012640) #16	KRT32 (ENSPCTG00005012144) #18	ENSPCTG00005011986 #20	ENSPCTG00005011593	ENSPCTG00005011457	ENSPCTG00005011439	ENSPCTG00005011402	ENSPCTG00005011382	KRT40 (ENSPCTG00005011311)	KRT12 (ENSPCTG00005011232) #22	ENSPCTG00005011172 #24	KRT222 (ENSPCTG00005011101) #25	SMARCE1 (ENSPCTG00005010790) #26	CCR7 (ENSPCTG00005010723) #27	TNS4 (ENSPCTG00005010657) #28	TOP2A (ENSPCTG00005010563) #30	WIPF2 (ENSPCTG00005010469) #34	MSL1 (ENSPCTG00005010403) #37	CASC3 (ENSPCTG00005010303) #36	PSMD3 (ENSPCTG00005010192)	LRRC3C (ENSPCTG00005010173)	ORMDL3 (ENSPCTG00005010109)	ZPBP2 (ENSPCTG00005010055)	IKZF3 (ENSPCTG00005008014)	GRB7 (ENSPCTG00005007782)
Blue whale	MODERN SPECIES	12	ENSBMSG00010017828 #21	ENSBMSG00010017779	ENSBMSG00010017768	ENSBMSG00010017743	ENSBMSG00010017722	ENSBMSG00010017711	ENSBMSG00010017700	ENSBMSG00010017678	ENSBMSG00010017663	ENSBMSG00010017650	ENSBMSG00010017624	KRT39 (ENSBMSG00010015952)	KRT23 (ENSBMSG00010015818)	ENSBMSG00010015791	KRT20 (ENSBMSG00010015759)	KRT12 (ENSBMSG00010015720) #22	KRT24 (ENSBMSG00010015682) #24	KRT222 (ENSBMSG00010015655) #25	ENSBMSG00010015441 #26	CCR7 (ENSBMSG00010015376) #27	TNS4 (ENSBMSG00010015347) #28	IGFBP4 (ENSBMSG00010015319) #29	TOP2A (ENSBMSG00010015282) #30	RARA (ENSBMSG00010015127) #32	CDC6 (ENSBMSG00010015096) #33	WIPF2 (ENSBMSG00010015049) #34	RAPGEFL1 (ENSBMSG00010015020) #35	CASC3 (ENSBMSG00010014953) #36	MSL1 (ENSBMSG00010014889) #37	ENSBMSG00010014868	NR1D1 (ENSBMSG00010014854)
Pecora	ANCESTRAL SPECIES	1	ENSGT00940000159486.`b.a.a.a.a	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295.u	ENSGT00940000160443	ENSGT00940000160295.v	ENSGT00940000162756	ENSGT00730000111539	ENSGT00390000001157.A.a	ENSGT00390000001157.B	ENSGT00390000001157.C.jc	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Yarkand deer	MODERN SPECIES	28	ENSCHYG00000006258	ENSCHYG00000006250	ENSCHYG00000006103	ENSCHYG00000006077	ENSCHYG00000006067	ENSCHYG00000006053	ENSCHYG00000006043	ENSCHYG00000006037	ENSCHYG00000006022	ENSCHYG00000006013	ENSCHYG00000004486	KRT40 (ENSCHYG00000004477)	KRT39 (ENSCHYG00000004465)	KRT23 (ENSCHYG00000004447)	KRT20 (ENSCHYG00000004429)	KRT12 (ENSCHYG00000004408) #22	KRT10 (ENSCHYG00000004393)	KRT28 (ENSCHYG00000004357)	KRT27 (ENSCHYG00000004325)	KRT26 (ENSCHYG00000004300) #23	KRT25 (ENSCHYG00000004269)	KRT24 (ENSCHYG00000004238) #24	KRT222 (ENSCHYG00000004215) #25	SMARCE1 (ENSCHYG00000004192) #26	CCR7 (ENSCHYG00000004168) #27	TNS4 (ENSCHYG00000004150) #28	IGFBP4 (ENSCHYG00000004135) #29	TOP2A (ENSCHYG00000004090) #30	RARA (ENSCHYG00000003992) #32	CDC6 (ENSCHYG00000003946) #33	WIPF2 (ENSCHYG00000003920) #34
Percora_a	ANCESTRAL SPECIES	2	ENSGT00940000155258.t #13	ENSGT00940000154403.a.a #14	ENSGT00940000154403.a.b ##14	ENSGT00940000161311 #16	ENSGT00940000161787 #17	ENSGT00940000161991 #18	ENSGT00940000162088.h #19	ENSGT00940000162088.g #19	ENSGT00940000153980.q #21	ENSGT00390000001157.B	ENSGT00390000001157.C.jc	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Siberian musk deer	MODERN SPECIES	1210	ENSMMSG00000013897	ENSMMSG00000013853	ENSMMSG00000023929	ENSMMSG00000023925	ENSMMSG00000023922	ENSMMSG00000023920	ENSMMSG00000023916	ENSMMSG00000023913	ENSMMSG00000023911	ENSMMSG00000023909	ENSMMSG00000023903	KRT40 (ENSMMSG00000023897)	KRT39 (ENSMMSG00000023878)	KRT23 (ENSMMSG00000023863)	KRT20 (ENSMMSG00000023852)	KRT12 (ENSMMSG00000023847) #22	KRT10 (ENSMMSG00000023842)	KRT28 (ENSMMSG00000023835)	KRT27 (ENSMMSG00000023828)	KRT26 (ENSMMSG00000023818) #23	KRT25 (ENSMMSG00000023811)	KRT24 (ENSMMSG00000023804) #24	KRT222 (ENSMMSG00000023799) #25	ENSMMSG00000023764 #26	CCR7 (ENSMMSG00000023753) #27	TNS4 (ENSMMSG00000023734) #28	IGFBP4 (ENSMMSG00000023725) #29	TOP2A (ENSMMSG00000023680) #30	RARA (ENSMMSG00000023636) #32	CDC6 (ENSMMSG00000023611) #33	WIPF2 (ENSMMSG00000023597) #34
Bovidae	ANCESTRAL SPECIES	2	ENSGT00940000154403.a.b ##14	ENSGT00940000161311 #16	ENSGT00940000161787 #17	ENSGT00940000161991 #18	ENSGT00940000162088.h #19	ENSGT00940000162088.g #19	ENSGT00940000153980.q.b #21	ENSGT00940000163426	ENSGT00940000153980.q.a #21	ENSGT00390000001157.B	ENSGT00390000001157.C.jc	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000154268.e.b.a	ENSGT01090000260005.a.b.a.a #31
Bovinae	ANCESTRAL SPECIES		ENSGT00940000159486.`b.a.a.b.b	ENSGT00940000155433	ENSGT00940000162736.i	ENSGT00940000160443.c.b	ENSGT00940000160443.c.a	ENSGT00940000160295.u	ENSGT00940000160443.d	ENSGT00940000160295.v	ENSGT00390000001157.B	ENSGT00390000001157.C.jc	ENSGT00940000161968	ENSGT01050000244940.a.a.bb.a	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000154268.e.b.a	ENSGT01090000260005.a.b.a.a #31
Bos	ANCESTRAL SPECIES	1	ENSGT00940000159486.`b.a.a.b.b.c.a.b	ENSGT00940000155433	ENSGT00940000160295.u	ENSGT00940000162736.i	ENSGT00940000160443.c.b	ENSGT00940000160443.c.a	ENSGT00940000160443.d	ENSGT00940000160295.v	ENSGT00390000001157.C.jc.j	ENSGT00390000001157.C.jc.i.a	ENSGT00940000161968	ENSGT01050000244940.a.a.bb.a	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000154268.e.b.a	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Bos_a	ANCESTRAL SPECIES		ENSGT00940000159486.`b.a.a.b.b.c.b	ENSGT00940000159486.`b.a.a.b.b.d	ENSGT00940000162736.i.b	ENSGT00940000160443.c.b	ENSGT00940000160443.c.a	ENSGT00940000160443.d	ENSGT00940000160295.v	ENSGT00390000001157.B	ENSGT00390000001157.C.jc.i.b	ENSGT00390000001157.C.jc.i.a	ENSGT00940000161968	ENSGT01050000244940.a.a.bb.a	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000154268.e.b.a	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Domestic yak	MODERN SPECIES	10	ENSBGRG00000014915	ENSBGRG00000014928	ENSBGRG00000015034	ENSBGRG00000015061	ENSBGRG00000015074	ENSBGRG00000015111	ENSBGRG00000015136	KAP3-1 (ENSBGRG00000015154)	ENSBGRG00000015181	ENSBGRG00000015228	KAP3.3 (ENSBGRG00000015266)	KRT40 (ENSBGRG00000015292)	KRT39 (ENSBGRG00000015379)	KRT23 (ENSBGRG00000015492)	KRT20 (ENSBGRG00000016100)	KRT12 (ENSBGRG00000016211) #22	KRT10 (ENSBGRG00000016347)	KRT28 (ENSBGRG00000016455)	KRT27 (ENSBGRG00000016581)	KRT26 (ENSBGRG00000016662) #23	KRT25 (ENSBGRG00000016734)	KRT24 (ENSBGRG00000016783) #24	KRT222 (ENSBGRG00000016889) #25	SMARCE1 (ENSBGRG00000016928) #26	CCR7 (ENSBGRG00000017039) #27	TNS4 (ENSBGRG00000017101) #28	IGFBP4 (ENSBGRG00000017437) #29	TOP2A (ENSBGRG00000017633) #30	ENSBGRG00000019354	ENSBGRG00000019366 #31	RARA (ENSBGRG00000019399) #32
Wild yak	MODERN SPECIES	1109	ENSBMUG00000007308	ENSBMUG00000007315	ENSBMUG00000007321	ENSBMUG00000007333	ENSBMUG00000007360	ENSBMUG00000007379	ENSBMUG00000007389	ENSBMUG00000007393	ENSBMUG00000007396	ENSBMUG00000007403	KRT40 (ENSBMUG00000007416)	ENSBMUG00000007422	KRT39 (ENSBMUG00000007430)	KRT23 (ENSBMUG00000007436)	KRT20 (ENSBMUG00000007456)	KRT12 (ENSBMUG00000007467) #22	KRT10 (ENSBMUG00000007473)	KRT28 (ENSBMUG00000007482)	KRT27 (ENSBMUG00000007494)	KRT26 (ENSBMUG00000007503) #23	ENSBMUG00000007508
Bos_b	ANCESTRAL SPECIES	15	ENSGT00940000159486.`b.a.a.b.b.c.a.a.b.a	ENSGT00940000155433.i.b	ENSGT00940000155433.i.a	ENSGT00940000162736.i	ENSGT00940000160443.c.b	ENSGT00940000160443.c.a	ENSGT00940000160443.d	ENSGT00940000160295.v	ENSGT00390000001157.C.jc.j	ENSGT00390000001157.B	ENSGT00390000001157.C.jc.i.a	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000154268.e.b.a	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Cow	MODERN SPECIES	10	ENSBTAG00000039644	ENSBTAG00000037665	ENSBTAG00000038759	ENSBTAG00000049202	KRTAP1-1 (ENSBTAG00000030559)	ENSBTAG00000024995	ENSBTAG00000050460	KRTAP3-1 (ENSBTAG00000052919)	ENSBTAG00000054542	ENSBTAG00000054092	KRTAP3-3 (ENSBTAG00000054927)	KRT40 (ENSBTAG00000017408)	KRT39 (ENSBTAG00000020078)	KRT23 (ENSBTAG00000040460)	KRT20 (ENSBTAG00000007794)	KRT12 (ENSBTAG00000015518) #22	KRT10 (ENSBTAG00000020824)	KRT28 (ENSBTAG00000030555)	KRT27 (ENSBTAG00000030548)	KRT26 (ENSBTAG00000030546) #23	KRT25 (ENSBTAG00000030542)	KRT24 (ENSBTAG00000040279) #24	KRT222 (ENSBTAG00000030539) #25	SMARCE1 (ENSBTAG00000015308) #26	CCR7 (ENSBTAG00000015133) #27	TNS4 (ENSBTAG00000007958) #28	IGFBP4 (ENSBTAG00000008611) #29	TOP2A (ENSBTAG00000019262) #30	ENSBTAG00000052844	RARA (ENSBTAG00000012500) #32	CDC6 (ENSBTAG00000010384) #33
Hybrid Bos Indicus	MODERN SPECIES	10	ENSBIXG00005031344	ENSBIXG00005031342	ENSBIXG00005031341	ENSBIXG00005031339	ENSBIXG00005031336	ENSBIXG00005031334	ENSBIXG00005031333	ENSBIXG00005031332	ENSBIXG00005031331	ENSBIXG00005031330	ENSBIXG00005031329	KRT40 (ENSBIXG00005031328)	KRT39 (ENSBIXG00005031324)	KRT23 (ENSBIXG00005031323)	KRT20 (ENSBIXG00005031321)	KRT12 (ENSBIXG00005031316) #22	KRT26 (ENSBIXG00005031310) #23	KRT28 (ENSBIXG00005031306)	KRT24 (ENSBIXG00005031302) #24	KRT222 (ENSBIXG00005031299) #25	SMARCE1 (ENSBIXG00005031296) #26	CCR7 (ENSBIXG00005031295) #27	TNS4 (ENSBIXG00005031291) #28	IGFBP4 (ENSBIXG00005031288) #29	TOP2A (ENSBIXG00005031281) #30	ENSBIXG00005031277	RARA (ENSBIXG00005031268) #32	CDC6 (ENSBIXG00005031258) #33	WIPF2 (ENSBIXG00005031247) #34	RAPGEFL1 (ENSBIXG00005031234) #35	CASC3 (ENSBIXG00005031226) #36
American bison	MODERN SPECIES	3101	ENSBBBG00000010127	ENSBBBG00000010122	ENSBBBG00000010119	ENSBBBG00000010115	ENSBBBG00000010112	ENSBBBG00000006688	ENSBBBG00000025245	ENSBBBG00000025241	ENSBBBG00000008086	ENSBBBG00000025235	KRT40 (ENSBBBG00000025230)	ENSBBBG00000025197	KRT39 (ENSBBBG00000006669)	KRT23 (ENSBBBG00000025161)	KRT20 (ENSBBBG00000025144)	KRT12 (ENSBBBG00000025119) #22	KRT10 (ENSBBBG00000006646)	KRT28 (ENSBBBG00000007843)	KRT27 (ENSBBBG00000025042)	KRT26 (ENSBBBG00000006612) #23	KRT25 (ENSBBBG00000025011)	KRT24 (ENSBBBG00000024991) #24	KRT222 (ENSBBBG00000024971) #25	ENSBBBG00000007827	SMARCE1 (ENSBBBG00000024947) #26	CCR7 (ENSBBBG00000024903) #27	TNS4 (ENSBBBG00000024883) #28	IGFBP4 (ENSBBBG00000024848) #29	TOP2A (ENSBBBG00000024833) #30	ENSBBBG00000007723	RARA (ENSBBBG00000024732) #32
Caprinae	ANCESTRAL SPECIES	1	ENSGT00940000163416.p.a.b	ENSGT00940000159486.`b.a.a.b.b.a	ENSGT00940000159486.`b.a.a.b.b.b	ENSGT00940000162736.l	ENSGT00940000162736.k	ENSGT00940000160295.u	ENSGT00940000160443	ENSGT00940000160295.v	ENSGT00390000001157.A.a	ENSGT00390000001157.B	ENSGT00390000001157.C.jc	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000154268.e.b.a	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Rambouillet Sheep	MODERN SPECIES	2	ENSOARG00020006213	ENSOARG00020006222	ENSOARG00020006235	ENSOARG00020006246	KRTAP1-1 (ENSOARG00020006263)	KRTAP1-3 (ENSOARG00020006325)	KAP3.2 (ENSOARG00020006425)	ENSOARG00020006438	ENSOARG00020006457	BIIIB4 (ENSOARG00020006476)	KRT40 (ENSOARG00020006496)	ENSOARG00020006570	KRT39 (ENSOARG00020006647)	KRT23 (ENSOARG00020006727)	KRT20 (ENSOARG00020006793)	KRT12 (ENSOARG00020006858) #22	KRT10 (ENSOARG00020006954)	KRT28 (ENSOARG00020007049)	KRT27 (ENSOARG00020007155)	KRT26 (ENSOARG00020007244) #23	KRT25 (ENSOARG00020007286)	KRT24 (ENSOARG00020007351) #24	KRT222 (ENSOARG00020007428) #25	SMARCE1 (ENSOARG00020007516) #26	CCR7 (ENSOARG00020007720) #27	TNS4 (ENSOARG00020007745) #28	IGFBP4 (ENSOARG00020007791) #29	TOP2A (ENSOARG00020007860) #30	RARA (ENSOARG00020008581) #32	CDC6 (ENSOARG00020008853) #33	WIPF2 (ENSOARG00020008893) #34
Goat	MODERN SPECIES	10	ENSCHIG00000008757	ENSCHIG00000006463	ENSCHIG00000007577	ENSCHIG00000026924	ENSCHIG00000014439	ENSCHIG00000023678	ENSCHIG00000016488	ENSCHIG00000022685	KRTAP3-1 (ENSCHIG00000001659)	ENSCHIG00000024894	ENSCHIG00000004564	KRT40 (ENSCHIG00000024829)	KRT39 (ENSCHIG00000017306)	KRT23 (ENSCHIG00000013100)	KRT20 (ENSCHIG00000013291)	KRT12 (ENSCHIG00000018097) #22	KRT10 (ENSCHIG00000025099)	KRT28 (ENSCHIG00000015839)	KRT27 (ENSCHIG00000024470)	KRT26 (ENSCHIG00000011943) #23	KRT25 (ENSCHIG00000015383)	KRT24 (ENSCHIG00000012661) #24	KRT222 (ENSCHIG00000023613) #25	SMARCE1 (ENSCHIG00000012322) #26	CCR7 (ENSCHIG00000019145) #27	TNS4 (ENSCHIG00000026674) #28	IGFBP4 (ENSCHIG00000014813) #29	TOP2A (ENSCHIG00000012498) #30	ENSCHIG00000003132	RARA (ENSCHIG00000014719) #32	CDC6 (ENSCHIG00000009302) #33
Camelidae	ANCESTRAL SPECIES	60						ENSGT00940000159486.ab.a.a.a	ENSGT00940000162736	ENSGT00940000160295.t	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
Arabian camel	MODERN SPECIES	7	ENSCDRG00005008781	ENSCDRG00005008758	ENSCDRG00005008736	ENSCDRG00005008718	ENSCDRG00005008703	ENSCDRG00005008691	ENSCDRG00005008658	KRTAP3-1 (ENSCDRG00005008632)	ENSCDRG00005008593	ENSCDRG00005008570	ENSCDRG00005008551	KRT40 (ENSCDRG00005008540)	KRT39 (ENSCDRG00005008468)	KRT23 (ENSCDRG00005008329)	KRT20 (ENSCDRG00005008233)	KRT12 (ENSCDRG00005008188) #22	KRT10 (ENSCDRG00005008151)	KRT28 (ENSCDRG00005008097)	KRT27 (ENSCDRG00005008025)	KRT26 (ENSCDRG00005007950) #23	KRT25 (ENSCDRG00005007856)	KRT24 (ENSCDRG00005007765) #24	KRT222 (ENSCDRG00005007721) #25	SMARCE1 (ENSCDRG00005007508) #26	CCR7 (ENSCDRG00005007460) #27	TNS4 (ENSCDRG00005007372) #28	IGFBP4 (ENSCDRG00005007330) #29	TOP2A (ENSCDRG00005007292) #30	RARA (ENSCDRG00005007055) #32	CDC6 (ENSCDRG00005006919) #33	WIPF2 (ENSCDRG00005006814) #34
Alpaca	DUPLICATION
Alpaca	MODERN SPECIES	2122							ENSVPAG00000000998	ENSVPAG00000015470	ENSVPAG00000015521	KRTAP3-1 (ENSVPAG00000000997)	ENSVPAG00000000996	ENSVPAG00000000995	KRT40 (ENSVPAG00000000994)	KRT23 (ENSVPAG00000000993)	ENSVPAG00000000990	KRT12 (ENSVPAG00000000988) #22	KRT10 (ENSVPAG00000000987)	KRT28 (ENSVPAG00000000986)	KRT27 (ENSVPAG00000000985)	KRT26 (ENSVPAG00000000983) #23	KRT25 (ENSVPAG00000000982)	ENSVPAG00000000981 #22	KRT222 (ENSVPAG00000000980) #25	SMARCE1 (ENSVPAG00000000979) #26
Alpaca	MODERN SPECIES	2122	ENSVPAG00000000998	ENSVPAG00000015470	ENSVPAG00000015521	KRTAP3-1 (ENSVPAG00000000997)	ENSVPAG00000000996	ENSVPAG00000000995	KRT40 (ENSVPAG00000000994)	KRT23 (ENSVPAG00000000993)	ENSVPAG00000000990	KRT12 (ENSVPAG00000000988) #22	KRT10 (ENSVPAG00000000987)	KRT28 (ENSVPAG00000000986)	KRT27 (ENSVPAG00000000985)	KRT26 (ENSVPAG00000000983) #23	KRT25 (ENSVPAG00000000982)	ENSVPAG00000000981 #22	KRT222 (ENSVPAG00000000980) #25	SMARCE1 (ENSVPAG00000000979) #26
Suina	ANCESTRAL SPECIES		ENSGT00940000153980.p #21	ENSGT00940000163841 #20	ENSGT00940000153980.o #21	ENSGT00950000183407	ENSGT00940000163658	ENSGT00940000159486.`b.a.a.a	ENSGT00940000160443.b	ENSGT00940000160443.a	ENSGT00940000160295	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
Chacoan peccary	MODERN SPECIES	941	ENSCWAG00000017481 #21	ENSCWAG00000017369	ENSCWAG00000017284	ENSCWAG00000017197	ENSCWAG00000017174	ENSCWAG00000017141	ENSCWAG00000017125	ENSCWAG00000017118	ENSCWAG00000017103	ENSCWAG00000017087	ENSCWAG00000017078	KRT40 (ENSCWAG00000017037)	KRT39 (ENSCWAG00000016982)	KRT23 (ENSCWAG00000016931)	KRT20 (ENSCWAG00000016869)	KRT12 (ENSCWAG00000016808) #22	KRT10 (ENSCWAG00000016732)	KRT28 (ENSCWAG00000016640)	KRT27 (ENSCWAG00000016581)	KRT26 (ENSCWAG00000016511) #23	KRT25 (ENSCWAG00000016404)	KRT222 (ENSCWAG00000016341) #25	SMARCE1 (ENSCWAG00000016110) #26	ENSCWAG00000016083	CCR7 (ENSCWAG00000016050) #27	TNS4 (ENSCWAG00000015968) #28	IGFBP4 (ENSCWAG00000015936) #29	TOP2A (ENSCWAG00000015757) #30	RARA (ENSCWAG00000015541) #32
Pig	MODERN SPECIES	3	ENSSSCG00000033085	ENSSSCG00000032172	ENSSSCG00000039030	ENSSSCG00000025789	ENSSSCG00000017451	ENSSSCG00000027632	ENSSSCG00000038114	ENSSSCG00000049072	ENSSSCG00000055895	ENSSSCG00000039927	ENSSSCG00000054562	KRT40 (ENSSSCG00000036987)	KRT39 (ENSSSCG00000017458)	KRT23 (ENSSSCG00000024067)	KRT20 (ENSSSCG00000017459)	KRT12 (ENSSSCG00000017460) #22	ENSSSCG00000058554	KRT10 (ENSSSCG00000028522)	KRT28 (ENSSSCG00000017461)	KRT27 (ENSSSCG00000017462)	KRT26 (ENSSSCG00000017463) #23	KRT25 (ENSSSCG00000017464)	KRT24 (ENSSSCG00000017465) #24	KRT222 (ENSSSCG00000036089) #25	SMARCE1 (ENSSSCG00000039137) #26	CCR7 (ENSSSCG00000017466) #27	TNS4 (ENSSSCG00000017470) #28	IGFBP4 (ENSSSCG00000017472) #29	TOP2A (ENSSSCG00000017473) #30	RARA (ENSSSCG00000017475) #32	CDC6 (ENSSSCG00000017471) #33
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00940000159486	ENSGT00940000154448.b.b.b.b	ENSGT00940000164263	ENSGT00940000163931	ENSGT00940000155433	ENSGT00940000162736	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000153980.x #21	ENSGT00940000163931	ENSGT00940000159486.hb	ENSGT00940000163975	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000161991 #18	ENSGT00940000163444	ENSGT00940000162088 #19	ENSGT00940000153980.x #21	ENSGT00940000159486.gb.b	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Caniformia_b	ANCESTRAL SPECIES	21				ENSGT00940000159486.gb.b	ENSGT00940000155433	ENSGT00940000162736	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
Ursidae	ANCESTRAL SPECIES	18							ENSGT00940000162736	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077.b	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
Ursus	ANCESTRAL SPECIES	87						ENSGT00940000163931	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C.xc	ENSGT00390000001157.C.yc	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077.b	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
Polar bear	MODERN SPECIES	95			ENSUMAG00000018199	ENSUMAG00000018195	ENSUMAG00000018188	ENSUMAG00000018183	ENSUMAG00000018180	ENSUMAG00000018176	KRTAP3-1 (ENSUMAG00000018174)	ENSUMAG00000018170	ENSUMAG00000018167	KRT40 (ENSUMAG00000018152)	KRT39 (ENSUMAG00000018147)	KRT23 (ENSUMAG00000018142)	KRT20 (ENSUMAG00000018137)	KRT12 (ENSUMAG00000018128) #22	KRT10 (ENSUMAG00000018108)	KRT28 (ENSUMAG00000018099)	KRT27 (ENSUMAG00000018095)	KRT26 (ENSUMAG00000018091) #23	KRT25 (ENSUMAG00000018076)	KRT24 (ENSUMAG00000018046) #24	KRT222 (ENSUMAG00000018026) #25	SMARCE1 (ENSUMAG00000018005) #26	CCR7 (ENSUMAG00000017996) #27	TNS4 (ENSUMAG00000017925) #28	IGFBP4 (ENSUMAG00000017899) #29	TOP2A (ENSUMAG00000017880) #30	RARA (ENSUMAG00000017839) #32	CDC6 (ENSUMAG00000017816) #33	WIPF2 (ENSUMAG00000017809) #34
American black bear	MODERN SPECIES	6791															KRT20 (ENSUAMG00000027918)	KRT12 (ENSUAMG00000027917) #22
Giant Panda	MODERN SPECIES	4	ENSAMEG00000023481 #9	KRT9 (ENSAMEG00000027196)	KRT16 (ENSAMEG00000005579) #11	ENSAMEG00000028827	ENSAMEG00000025134	ENSAMEG00000027447	ENSAMEG00000027894	ENSAMEG00000028834	ENSAMEG00000008411	ENSAMEG00000019943	ENSAMEG00000026945	KRT40 (ENSAMEG00000008365)	KRT39 (ENSAMEG00000008358)	KRT23 (ENSAMEG00000008337)	KRT20 (ENSAMEG00000008325)	KRT12 (ENSAMEG00000008309) #22	KRT28 (ENSAMEG00000008303)	KRT26 (ENSAMEG00000008292) #23	KRT25 (ENSAMEG00000008170)	ENSAMEG00000028027	KRT222 (ENSAMEG00000008167) #25	SMARCE1 (ENSAMEG00000008123) #26	CCR7 (ENSAMEG00000008120) #27	TNS4 (ENSAMEG00000008109) #28	IGFBP4 (ENSAMEG00000025172) #29	TOP2A (ENSAMEG00000007989) #30	RARA (ENSAMEG00000007921) #32	CDC6 (ENSAMEG00000007868) #33	WIPF2 (ENSAMEG00000007849) #34	RAPGEFL1 (ENSAMEG00000007814) #35	CASC3 (ENSAMEG00000007764) #36
Mustelinae	ANCESTRAL SPECIES	2						ENSGT00940000159486.gb.b	ENSGT00940000155433	ENSGT00940000162736	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.q #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
American mink	MODERN SPECIES	92					ENSNVIG00000001556	ENSNVIG00000001581	ENSNVIG00000001599	KRTAP3-1 (ENSNVIG00000001605)	ENSNVIG00000001610	ENSNVIG00000001613	ENSNVIG00000001625	KRT40 (ENSNVIG00000001640)	KRT39 (ENSNVIG00000001654)	K1C23 (ENSNVIG00000001671)	KRT20 (ENSNVIG00000001695)	KRT12 (ENSNVIG00000001720) #22	KRT10 (ENSNVIG00000001746)	KRT28 (ENSNVIG00000001803)	KRT27 (ENSNVIG00000001814)	KRT26 (ENSNVIG00000001823) #23	KRT25 (ENSNVIG00000001842)	KRT24 (ENSNVIG00000001847) #24	KT222 (ENSNVIG00000001863) #25	ENSNVIG00000001888 #26	CCR7 (ENSNVIG00000002253) #27	TNS4 (ENSNVIG00000002271) #28	IGFBP4 (ENSNVIG00000002312) #29	TOP2A (ENSNVIG00000002325) #30	RARA (ENSNVIG00000002409) #32	CDC6 (ENSNVIG00000002533) #33	WIPF2 (ENSNVIG00000002634) #34
Ferret	MODERN SPECIES	270								ENSMPUG00000014568	ENSMPUG00000014572	ENSMPUG00000014574	KRTAP3-1 (ENSMPUG00000020082)	ENSMPUG00000020083	KRT40 (ENSMPUG00000014577)	KRT23 (ENSMPUG00000014621)	KRT20 (ENSMPUG00000014622)	KRT12 (ENSMPUG00000014625) #22	KRT10 (ENSMPUG00000014636)	KRT28 (ENSMPUG00000014640)	KRT26 (ENSMPUG00000014642) #23	KRT25 (ENSMPUG00000014651)	KRT24 (ENSMPUG00000014653) #24	KRT222 (ENSMPUG00000014654) #25	ENSMPUG00000014660 #26	CCR7 (ENSMPUG00000014673) #27	TNS4 (ENSMPUG00000014676) #28	IGFBP4 (ENSMPUG00000014678) #29	TOP2A (ENSMPUG00000014680) #30	RARA (ENSMPUG00000014863) #32	ENSMPUG00000014883	CDC6 (ENSMPUG00000014897) #33	WIPF2 (ENSMPUG00000014898) #34
Canidae	ANCESTRAL SPECIES	2	ENSGT00940000163416	ENSGT00940000159486.gb.b	ENSGT00940000155433.p	ENSGT00940000162736	ENSGT00940000155433.o	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C.`d	ENSGT00390000001157.C.ad	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415.b	ENSGT00390000003628.b.o #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00940000155433.p.d.a	ENSGT00940000162736	ENSGT00940000155433.o	ENSGT00940000160295.n	ENSGT00940000160295.m.a	ENSGT00940000160295.m.b.a	ENSGT00940000160295.m.b.b	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C.`d	ENSGT00390000001157.C.ad	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415.b	ENSGT00390000003628.b.o #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Dog	MODERN SPECIES	37	ENSCAFG00845013400	ENSCAFG00845013413	ENSCAFG00845013424	ENSCAFG00845013437	ENSCAFG00845013453	ENSCAFG00845013469	ENSCAFG00845013488	KRTAP3-1 (ENSCAFG00845013500)	ENSCAFG00845013514	ENSCAFG00845013535	ENSCAFG00845013549	KRT40 (ENSCAFG00845013567)	KRT39 (ENSCAFG00845013600)	KRT23 (ENSCAFG00845013633)	KRT20 (ENSCAFG00845013676)	KRT12 (ENSCAFG00845013703) #22	KRT10 (ENSCAFG00845013739)	KRT28 (ENSCAFG00845007176)	KRT27 (ENSCAFG00845007233)	KRT26 (ENSCAFG00845007297) #23	KRT25 (ENSCAFG00845007356)	KRT24 (ENSCAFG00845007445) #24	KRT222 (ENSCAFG00845007545) #25	SMARCE1 (ENSCAFG00845007717) #26	CCR7 (ENSCAFG00845007930) #27	TNS4 (ENSCAFG00845008016) #28	IGFBP4 (ENSCAFG00845008138) #29	TOP2A (ENSCAFG00845008263) #30	TAF12 (ENSCAFG00845008570)	RARA (ENSCAFG00845008607) #32	CDC6 (ENSCAFG00845008754) #33
Dingo	MODERN SPECIES	150	ENSCAFG00020018535	ENSCAFG00020018539	ENSCAFG00020018541	ENSCAFG00020018544	ENSCAFG00020018546	ENSCAFG00020018547	ENSCAFG00020018549	KRTAP3-1 (ENSCAFG00020018551)	ENSCAFG00020018552	ENSCAFG00020018554	ENSCAFG00020018555	KRT40 (ENSCAFG00020018558)	KRT39 (ENSCAFG00020018562)	KRT23 (ENSCAFG00020018572)	KRT20 (ENSCAFG00020018575)	KRT12 (ENSCAFG00020018578) #22	KRT10 (ENSCAFG00020018583)	KRT28 (ENSCAFG00020018588)	KRT27 (ENSCAFG00020018596)	KRT26 (ENSCAFG00020018606) #23	KRT25 (ENSCAFG00020018610)	KRT24 (ENSCAFG00020018616) #24	KRT222 (ENSCAFG00020018618) #25	ENSCAFG00020018619	SMARCE1 (ENSCAFG00020018621) #26	CCR7 (ENSCAFG00020018629) #27	TNS4 (ENSCAFG00020018638) #28	TOP2A (ENSCAFG00020018681) #30	ENSCAFG00020018725	RARA (ENSCAFG00020018727) #32	CDC6 (ENSCAFG00020018729) #33
Red fox	MODERN SPECIES	20	ENSVVUG00000024278	ENSVVUG00000024280	ENSVVUG00000024281	ENSVVUG00000024282	ENSVVUG00000024284	ENSVVUG00000024286	ENSVVUG00000024287	KRTAP3-1 (ENSVVUG00000024289)	ENSVVUG00000024291	ENSVVUG00000024294	ENSVVUG00000024296	KRT40 (ENSVVUG00000024301)	KRT39 (ENSVVUG00000024305)	KRT23 (ENSVVUG00000024308)	KRT20 (ENSVVUG00000024310)	KRT12 (ENSVVUG00000024314) #22	KRT10 (ENSVVUG00000024318)	KRT28 (ENSVVUG00000024322)	KRT27 (ENSVVUG00000024325)	KRT26 (ENSVVUG00000024328) #23	KRT25 (ENSVVUG00000024329)	KRT24 (ENSVVUG00000000130) #24	KRT222 (ENSVVUG00000000398) #25	ENSVVUG00000000422 #26	CCR7 (ENSVVUG00000000457) #27	TNS4 (ENSVVUG00000000491) #28	IGFBP4 (ENSVVUG00000000835) #29	TOP2A (ENSVVUG00000000844) #30	ENSVVUG00000000854 #31	RARA (ENSVVUG00000000865) #32	CDC6 (ENSVVUG00000000907) #33
Felidae	ANCESTRAL SPECIES	8	ENSGT00940000163658	ENSGT00940000163416	ENSGT00940000163931	ENSGT00940000159486.hb	ENSGT00940000163975	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295.o	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Panthera	ANCESTRAL SPECIES	14	ENSGT00940000164350.B	ENSGT00940000159486.hb	ENSGT00940000163975	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295.o	ENSGT00940000160295.p.b	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C.cd.b	ENSGT00390000001157.C.cd.a	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
Tiger	MODERN SPECIES	230					ENSPTIG00000012077	ENSPTIG00000011657	ENSPTIG00000005285	KRTAP3-1 (ENSPTIG00000005276)	ENSPTIG00000005265	ENSPTIG00000005263	ENSPTIG00000005258	KRT40 (ENSPTIG00000009659)	KRT39 (ENSPTIG00000009611)	KRT23 (ENSPTIG00000008885)	KRT20 (ENSPTIG00000007826)	KRT12 (ENSPTIG00000006986) #22	KRT10 (ENSPTIG00000006172)	KRT28 (ENSPTIG00000005633)	KRT27 (ENSPTIG00000003088)	KRT26 (ENSPTIG00000000564) #23	KRT25 (ENSPTIG00000021487)	KRT24 (ENSPTIG00000021177) #24	KRT222 (ENSPTIG00000020976) #25	ENSPTIG00000019942 #26	CCR7 (ENSPTIG00000019719) #27	TNS4 (ENSPTIG00000019307) #28	IGFBP4 (ENSPTIG00000018826) #29	TOP2A (ENSPTIG00000017914) #30	RARA (ENSPTIG00000015995) #32	CDC6 (ENSPTIG00000015145) #33	WIPF2 (ENSPTIG00000014120) #34
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00940000153980.w.b #21	ENSGT00940000153980.w.a.a #21	ENSGT00940000163841.k #20	ENSGT00940000153980.w.a.b #21	ENSGT00940000163658	ENSGT00940000163416	ENSGT00940000160295.p.b	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C.cd.b	ENSGT00390000001157.C.cd.a	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
leopard	MODERN SPECIES	273	ENSPPRG00000012558	ENSPPRG00000012574	ENSPPRG00000012576	ENSPPRG00000012582	ENSPPRG00000012588	ENSPPRG00000012595	ENSPPRG00000022039	KRTAP3-1 (ENSPPRG00000012597)	ENSPPRG00000022062	ENSPPRG00000012599	ENSPPRG00000012602	KRT40 (ENSPPRG00000022324)	KRT39 (ENSPPRG00000022347)	KRT23 (ENSPPRG00000022378)	KRT20 (ENSPPRG00000022399)	KRT12 (ENSPPRG00000022420) #22	KRT10 (ENSPPRG00000022440)
lion	MODERN SPECIES	14	ENSPLOG00000015759	ENSPLOG00000015677 #19	ENSPLOG00000015602 #20	ENSPLOG00000015516 #20	KRT33A (ENSPLOG00000015451) #21	KRTAP16-1 (ENSPLOG00000015356)	ENSPLOG00000015324	KRTAP3-1 (ENSPLOG00000015302)	ENSPLOG00000015267	ENSPLOG00000015250	ENSPLOG00000015231	KRT40 (ENSPLOG00000015146)	KRT39 (ENSPLOG00000015059)	KRT23 (ENSPLOG00000014953)	KRT20 (ENSPLOG00000014850)	KRT12 (ENSPLOG00000014753) #22	KRT10 (ENSPLOG00000014662)	KRT28 (ENSPLOG00000014559)	KRT27 (ENSPLOG00000014479)	KRT26 (ENSPLOG00000014386) #23	KRT25 (ENSPLOG00000014291)	KRT24 (ENSPLOG00000014203) #24	KRT222 (ENSPLOG00000014138) #25	SMARCE1 (ENSPLOG00000013227) #26	CCR7 (ENSPLOG00000013103) #27	TNS4 (ENSPLOG00000012955) #28	IGFBP4 (ENSPLOG00000012896) #29	TOP2A (ENSPLOG00000012809) #30	RARA (ENSPLOG00000012621) #32	CDC6 (ENSPLOG00000012533) #33	WIPF2 (ENSPLOG00000012439) #34
Cat	MODERN SPECIES	245	ENSFCAG00000045780	ENSFCAG00000053497	ENSFCAG00000045055	ENSFCAG00000040679	ENSFCAG00000027774	ENSFCAG00000008820	ENSFCAG00000006428	KRTAP3-1 (ENSFCAG00000013310)	ENSFCAG00000035429	ENSFCAG00000033927	ENSFCAG00000038642	ENSFCAG00000046553	KRT39 (ENSFCAG00000002023)	KRT23 (ENSFCAG00000002022)	KRT20 (ENSFCAG00000043236)	KRT12 (ENSFCAG00000002020) #22	KRT10 (ENSFCAG00000002019)	KRT28 (ENSFCAG00000044800)	KRT26 (ENSFCAG00000026580) #23	KRT25 (ENSFCAG00000042427)	KRT24 (ENSFCAG00000002015) #24	KRT222 (ENSFCAG00000018462) #25	SMARCE1 (ENSFCAG00000009646) #26	ENSFCAG00000036122	CCR7 (ENSFCAG00000033714) #27	TNS4 (ENSFCAG00000009644) #28	IGFBP4 (ENSFCAG00000045422) #29	TOP2A (ENSFCAG00000009642) #30	GJD3 (ENSFCAG00000041256) #31	RARA (ENSFCAG00000028515) #32	CDC6 (ENSFCAG00000030659) #33
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00940000159486	ENSGT00940000154448.b.b.b.b	ENSGT00940000164263	ENSGT00940000163931	ENSGT00940000155433	ENSGT00940000160443	ENSGT00940000162736	ENSGT00940000160295	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Equus	ANCESTRAL SPECIES		ENSGT00940000159486.fb	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486.eb.b	ENSGT00940000159486.eb.a.b	ENSGT00940000159486.eb.a.a	ENSGT00940000155433.q.a	ENSGT00940000160443.j	ENSGT00940000160443.i	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Horse	MODERN SPECIES	2	ENSECAG00000052248	ENSECAG00000028394	ENSECAG00000036742	ENSECAG00000050413	ENSECAG00000050669	ENSECAG00000055451	ENSECAG00000033315	ENSECAG00000051092	ENSECAG00000047844	ENSECAG00000059966	ENSECAG00000052559	ENSECAG00000045648	KRT40 (ENSECAG00000056584)	KRT23 (ENSECAG00000014812)	KRT20 (ENSECAG00000026977)	KRT12 (ENSECAG00000018999) #22	KRT10A (ENSECAG00000020036)	ENSECAG00000024656	KRT28 (ENSECAG00000009734)	KRT25 (ENSECAG00000013748)	KRT26 (ENSECAG00000012819) #23	KRT24 (ENSECAG00000016177) #24	KRT222 (ENSECAG00000026968) #25	SMARCE1 (ENSECAG00000022534) #26	CCR7 (ENSECAG00000004945) #27	TNS4 (ENSECAG00000007918) #28	IGFBP4 (ENSECAG00000011271) #29	TOP2A (ENSECAG00000013053) #30	GJD3 (ENSECAG00000041545) #31	RARA (ENSECAG00000023358) #32	CDC6 (ENSECAG00000009913) #33
Donkey	MODERN SPECIES	4	ENSEASG00005026893	ENSEASG00005035834	ENSEASG00005033437	ENSEASG00005036720	ENSEASG00005038813	ENSEASG00005003740	ENSEASG00005024433	KRTAP3-1 (ENSEASG00005032224)	ENSEASG00005003734	ENSEASG00005038141	ENSEASG00005028083	KRT40 (ENSEASG00005003721)	KRT39 (ENSEASG00005003716)	KRT23 (ENSEASG00005003713)	KRT20 (ENSEASG00005003710)	KRT12 (ENSEASG00005003707) #22	KRT10 (ENSEASG00005003703)	KRT27 (ENSEASG00005035050)	KRT26 (ENSEASG00005003695) #23	KRT25 (ENSEASG00005003693)	KRT24 (ENSEASG00005003685) #24	KRT222 (ENSEASG00005003681) #25	SMARCE1 (ENSEASG00005003680) #26	CCR7 (ENSEASG00005003679) #27	TNS4 (ENSEASG00005003677) #28	IGFBP4 (ENSEASG00005003675) #29	TOP2A (ENSEASG00005003198) #30	GJD3 (ENSEASG00005031621) #31	RARA (ENSEASG00005003055) #32	CDC6 (ENSEASG00005003036) #33	ENSEASG00005004849
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000162088 #19	ENSGT00940000153980 #21	ENSGT00940000163426	ENSGT00940000163841 #20	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Megabat	MODERN SPECIES	2609														KRT23 (ENSPVAG00000011372)	KRT20 (ENSPVAG00000011371)	KRT12 (ENSPVAG00000011370) #22	KRT10 (ENSPVAG00000011368)	KRT28 (ENSPVAG00000011367)	KRT27 (ENSPVAG00000011365)	KRT26 (ENSPVAG00000011363) #23	KRT25 (ENSPVAG00000011361)	KRT24 (ENSPVAG00000011359) #24	KRT222 (ENSPVAG00000011357) #25	SMARCE1 (ENSPVAG00000011355) #26
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000161991 #18	ENSGT00940000163841 #20	ENSGT00940000153980 #21	ENSGT00940000163426	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Microbat	MODERN SPECIES	1083	ENSMLUG00000015140 #21	ENSMLUG00000015139	ENSMLUG00000014892	ENSMLUG00000014134	ENSMLUG00000010189	ENSMLUG00000007823	ENSMLUG00000007830	ENSMLUG00000007847	KRTAP3-1 (ENSMLUG00000001160)	ENSMLUG00000001163	ENSMLUG00000017264	KRT40 (ENSMLUG00000017258)	KRT39 (ENSMLUG00000003103)	KRT23 (ENSMLUG00000003098)	KRT20 (ENSMLUG00000003085)	KRT12 (ENSMLUG00000003072) #22	KRT10 (ENSMLUG00000006133)	KRT25 (ENSMLUG00000004617)	ENSMLUG00000028688 #24
Eulipotyphla	ANCESTRAL SPECIES	64															ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994
Common shrew	MODERN SPECIES	6120															ENSSARG00000003299	ENSSARG00000003265 #22	ENSSARG00000003234	KRT28 (ENSSARG00000003188)	KRT26 (ENSSARG00000003150) #23
Hedgehog	MODERN SPECIES	7866															KRT20 (ENSEEUG00000000048)	KRT12 (ENSEEUG00000000041) #22
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000159486	ENSGT00940000163931	ENSGT00940000154448.b.b.b.a.a	ENSGT00940000163975	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b #26	ENSGT00940000164415	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT01100000265611	ENSGT00940000163416	ENSGT00940000164263	ENSGT00940000163931	ENSGT00940000155433	ENSGT00940000162736	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Glires	ANCESTRAL SPECIES	3	ENSGT00940000164263	ENSGT00940000154448.b.b.b.b.e.b.b	ENSGT00940000159486.e.a	ENSGT00940000163931	ENSGT00940000155433	ENSGT00940000162736	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000163931	ENSGT00940000154448.b.b.b.b.e.a	ENSGT00940000159486.e.a	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000162736	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000163416	ENSGT00940000164263	ENSGT00940000163931	ENSGT00940000159486.f	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Kangaroo rat	MODERN SPECIES	326	ENSDORG00000026358	ENSDORG00000023366	ENSDORG00000008477	ENSDORG00000023721	ENSDORG00000012266	ENSDORG00000024033	ENSDORG00000028606	ENSDORG00000016176	ENSDORG00000025402	ENSDORG00000024187	ENSDORG00000023985	Krt40 (ENSDORG00000016181)	Krt39 (ENSDORG00000008898)	Krt23 (ENSDORG00000001625)	Krt20 (ENSDORG00000001623)	ENSDORG00000001618 #22	Krt10 (ENSDORG00000006753)	Krt28 (ENSDORG00000006752)	Krt27 (ENSDORG00000006751)	Krt26 (ENSDORG00000006750) #23	Krt25 (ENSDORG00000006749)	Krt24 (ENSDORG00000016005) #24	Krt222 (ENSDORG00000016002) #25	Smarce1 (ENSDORG00000015999) #26	Ccr7 (ENSDORG00000014123) #27	Tns4 (ENSDORG00000016056) #28	Igfbp4 (ENSDORG00000016055) #29	Top2a (ENSDORG00000016054) #30	Rara (ENSDORG00000023922) #32	Cdc6 (ENSDORG00000015184) #33	ENSDORG00000026557 #34
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000164263	ENSGT00940000153980.j.a.a #21	ENSGT00940000153980.j.a.b.b #21	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000159486.f	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Muroidea	ANCESTRAL SPECIES		ENSGT00940000159486.f.f	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000159486.f.e.a.a.a	ENSGT00940000155433	ENSGT00940000160295.ib.a	ENSGT00940000160295.ib.b.b.a.a	ENSGT00940000160295.ib.b.a	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000163416	ENSGT00940000164263	ENSGT00940000159486.f.f.b	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000160295.ib.a	ENSGT00940000160295.ib.b.a	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000154403.a.b ##14	ENSGT00940000161311 #16	ENSGT00940000161787 #17	ENSGT00940000161991 #18	ENSGT00940000153980.j.a.b.a.b #21	ENSGT00940000163426	ENSGT00940000153980.j.a.a #21	ENSGT00940000160295.ib.a	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000153980.j.a.b.a.a.b #21	ENSGT00940000163658	ENSGT00940000159486.f.e.a.b	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000160295.ib.b.b.a.b	ENSGT00940000160295.ib.b.b.a.a	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Northern American deer mouse	MODERN SPECIES	21	Gm11555 (ENSPEMG00000028694)	ENSPEMG00000027729	ENSPEMG00000028223	ENSPEMG00000024614	ENSPEMG00000030371	ENSPEMG00000025752	Krtap1-5 (ENSPEMG00000014953)	Krtap3-1 (ENSPEMG00000014982)	Gm11939 (ENSPEMG00000025106)	ENSPEMG00000027732	ENSPEMG00000030050	Krt40 (ENSPEMG00000011683)	Krt39 (ENSPEMG00000013051)	Krt23 (ENSPEMG00000010375)	Krt20 (ENSPEMG00000008907)	Krt12 (ENSPEMG00000012317) #22	Krt10 (ENSPEMG00000016211)	Krt28 (ENSPEMG00000017906)	Krt27 (ENSPEMG00000002310)	Krt26 (ENSPEMG00000012535) #23	Krt25 (ENSPEMG00000016149)	Krt24 (ENSPEMG00000017697) #24	Krt222 (ENSPEMG00000011259) #25	Smarce1 (ENSPEMG00000018043) #26	Ccr7 (ENSPEMG00000009706) #27	Tns4 (ENSPEMG00000020329) #28	Igfbp4 (ENSPEMG00000014210) #29	Top2a (ENSPEMG00000016393) #30	Gjd3 (ENSPEMG00000014917) #31	Rara (ENSPEMG00000010534) #32	Cdc6 (ENSPEMG00000012427) #33
Prairie vole	MODERN SPECIES	114	Gm11563 (ENSMOCG00000017454)	ENSMOCG00000009228	ENSMOCG00000005151	ENSMOCG00000005136	ENSMOCG00000005678	ENSMOCG00000010132	ENSMOCG00000003960	Krtap1-5 (ENSMOCG00000012540)	Krtap3-1 (ENSMOCG00000020675)	ENSMOCG00000005111	ENSMOCG00000002845	Krt40 (ENSMOCG00000016435)	Krt39 (ENSMOCG00000018914)	Krt23 (ENSMOCG00000014828)	Krt20 (ENSMOCG00000002735)	Krt12 (ENSMOCG00000001503) #22	Krt10 (ENSMOCG00000009134)	Krt28 (ENSMOCG00000007496)	Krt27 (ENSMOCG00000005020)	Krt26 (ENSMOCG00000014953) #23	Krt25 (ENSMOCG00000020569)	Krt24 (ENSMOCG00000017266) #24	Krt222 (ENSMOCG00000021148) #25	ENSMOCG00000015059 #26	Ccr7 (ENSMOCG00000004292) #27	Tns4 (ENSMOCG00000022959) #28	Igfbp4 (ENSMOCG00000021157) #29	Top2a (ENSMOCG00000013182) #30	Gjd3 (ENSMOCG00000005264) #31	Rara (ENSMOCG00000016096) #32	Cdc6 (ENSMOCG00000021152) #33
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000163658	ENSGT00940000164459	ENSGT00840000130699	ENSGT00940000159486.f.f.a.b	ENSGT00940000163416	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000160295.ib.b.b.a.b	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Golden Hamster	MODERN SPECIES	674					ENSMAUG00000021591	ENSMAUG00000014874	ENSMAUG00000016423	ENSMAUG00000010652	Krtap1-3 (ENSMAUG00000013235)	Krtap3-1 (ENSMAUG00000010133)	ENSMAUG00000010087	Krt40 (ENSMAUG00000019288)	Krt39 (ENSMAUG00000011575)	Krt23 (ENSMAUG00000015956)	Krt20 (ENSMAUG00000012821)	Krt12 (ENSMAUG00000021614) #22	Krt10 (ENSMAUG00000022010)	Krt28 (ENSMAUG00000016117)	Krt27 (ENSMAUG00000010781)	Krt26 (ENSMAUG00000009507) #23	Krt25 (ENSMAUG00000016144)	Krt24 (ENSMAUG00000000934) #24	Krt222 (ENSMAUG00000009280) #25	Smarce1 (ENSMAUG00000006265) #26	Ccr7 (ENSMAUG00000021249) #27	Tns4 (ENSMAUG00000016240) #28	Igfbp4 (ENSMAUG00000008494) #29	Top2a (ENSMAUG00000010103) #30	Rara (ENSMAUG00000014473) #32	Cdc6 (ENSMAUG00000004369) #33	Wipf2 (ENSMAUG00000002857) #34
Chinese hamster chok1gshd	MODERN SPECIES	33	ENSCGRG00001012466	ENSCGRG00001024559	ENSCGRG00001003344	ENSCGRG00001012468	ENSCGRG00001021738	ENSCGRG00001009734	Krtap9-3 (ENSCGRG00001007897)	Krtap3-1 (ENSCGRG00001004619)	Gm11939 (ENSCGRG00001005088)	ENSCGRG00001006304	ENSCGRG00001012848	Krt40 (ENSCGRG00001000083)	Krt39 (ENSCGRG00001019993)	Krt23 (ENSCGRG00001000115)	Krt20 (ENSCGRG00001022236)	Krt12 (ENSCGRG00001000815) #22	Krt10 (ENSCGRG00001006589)	Krt28 (ENSCGRG00001010998)	Krt27 (ENSCGRG00001020156)	Krt26 (ENSCGRG00001023067) #23	Krt25 (ENSCGRG00001019023)	Krt24 (ENSCGRG00001016600) #24	Krt222 (ENSCGRG00001001412) #25	Smarce1 (ENSCGRG00001010211) #26	Ccr7 (ENSCGRG00001022917) #27	Tns4 (ENSCGRG00001016573) #28	Igfbp4 (ENSCGRG00001002713) #29	Top2a (ENSCGRG00001020913) #30	Gjd3 (ENSCGRG00001008548) #31	Rara (ENSCGRG00001021724) #32	CDC6 (ENSCGRG00001023158) #33
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000164263	ENSGT00940000159486.f.f.b	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000160295.ib.a	ENSGT00940000160295.ib.b.b.b	ENSGT00940000160295.ib.b.a	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Mus	ANCESTRAL SPECIES	2	ENSGT00940000159486.f.e.b	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433.fb.b	ENSGT00940000155433.fb.a	ENSGT00940000160295.ib.a	ENSGT00940000160295.ib.b.b.b	ENSGT00940000160295.ib.b.a	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000159486.f.e.a.a.a	ENSGT00940000155433.fb.b.a	ENSGT00940000155433.fb.a	ENSGT00940000155433.fb.b.b	ENSGT00940000160295.ib.a	ENSGT00940000160295.ib.b.b.b	ENSGT00940000160295.ib.b.a	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000163416	ENSGT00840000130699.b	ENSGT00840000130699.a.b	ENSGT00940000155433.fb.b.b	ENSGT00940000160295.ib.a	ENSGT00940000160295.ib.b.b.b	ENSGT00940000160295.ib.b.a	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Mouse	MODERN SPECIES	2	Krtap2-4 (ENSMUSG00000060756)	Gm11937 (ENSMUSG00000058725)	Gm11938 (ENSMUSG00000057674)	Krtap9-3 (ENSMUSG00000049809)	Krtap1-3 (ENSMUSG00000078131)	Krtap1-4 (ENSMUSG00000075567)	Krtap1-5 (ENSMUSG00000047253)	Krtap3-1 (ENSMUSG00000047564)	Gm11939 (ENSMUSG00000078132)	Krtap3-2 (ENSMUSG00000069721)	Krtap3-3 (ENSMUSG00000069722)	Krt40 (ENSMUSG00000059169)	Krt39 (ENSMUSG00000064165)	Krt23 (ENSMUSG00000006777)	Krt20 (ENSMUSG00000035775)	Krt12 (ENSMUSG00000020912) #22	Krt10 (ENSMUSG00000019761)	Krt28 (ENSMUSG00000055937)	Krt27 (ENSMUSG00000017588)	Krt26 (ENSMUSG00000075570) #23	Krt25 (ENSMUSG00000035831)	Krt24 (ENSMUSG00000020913) #24	Krt222 (ENSMUSG00000035849) #25	Smarce1 (ENSMUSG00000037935) #26	Ccr7 (ENSMUSG00000037944) #27	Tns4 (ENSMUSG00000017607) #28	Igfbp4 (ENSMUSG00000017493) #29	Top2a (ENSMUSG00000020914) #30	Gjd3 (ENSMUSG00000047197) #31	Rara (ENSMUSG00000037992) #32	Cdc6 (ENSMUSG00000017499) #33
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000159486.f.f.b.a	ENSGT00940000154448.b.b.a.b.b.a	ENSGT00940000154448.b.b.a.a.b	ENSGT00940000155433.fb.a	ENSGT00940000160295.ib.a	ENSGT00940000160295.ib.b.b.b	ENSGT00940000160295.ib.b.a	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Steppe mouse	MODERN SPECIES	2890	ENSMSIG00000025810	ENSMSIG00000025818	ENSMSIG00000025826	Krtap2-4 (ENSMSIG00000025829)	Krtap9-3 (ENSMSIG00000025835)	Krtap1-3 (ENSMSIG00000025841)	Krtap1-4 (ENSMSIG00000025846)	Krtap1-5 (ENSMSIG00000025851)	Krtap3-1 (ENSMSIG00000025854)	Gm11939 (ENSMSIG00000025860)	ENSMSIG00000025863	Krt40 (ENSMSIG00000025867)	Krt39 (ENSMSIG00000025878)	Krt23 (ENSMSIG00000025887)	Krt20 (ENSMSIG00000025894)	Krt12 (ENSMSIG00000025906) #22	Krt10 (ENSMSIG00000025917)	Krt28 (ENSMSIG00000025924)	Krt27 (ENSMSIG00000025937)	Krt26 (ENSMSIG00000025947) #23	Krt25 (ENSMSIG00000025951)	Krt24 (ENSMSIG00000025961) #24	Krt222 (ENSMSIG00000025974) #25	ENSMSIG00000025987 #26	ENSMSIG00000026011	Ccr7 (ENSMSIG00000026032) #27	Tns4 (ENSMSIG00000026039) #28	Igfbp4 (ENSMSIG00000026061) #29	Top2a (ENSMSIG00000026083) #30	Gjd3 (ENSMSIG00000026168) #31	Rara (ENSMSIG00000026176) #32
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0017976	MGP_SPRETEiJ_G0017975	MGP_SPRETEiJ_G0017974	Krtap9-3 (MGP_SPRETEiJ_G0017973)	Krtap1-3 (MGP_SPRETEiJ_G0017972)	Krtap1-4 (MGP_SPRETEiJ_G0017971)	Krtap1-5 (MGP_SPRETEiJ_G0017970)	Krtap3-1 (MGP_SPRETEiJ_G0017969)	Gm11939 (MGP_SPRETEiJ_G0017968)	MGP_SPRETEiJ_G0017967	MGP_SPRETEiJ_G0017966	Krt40 (MGP_SPRETEiJ_G0017965)	Krt39 (MGP_SPRETEiJ_G0017964)	Krt23 (MGP_SPRETEiJ_G0017963)	Krt20 (MGP_SPRETEiJ_G0017962)	Krt12 (MGP_SPRETEiJ_G0017961) #22	Krt10 (MGP_SPRETEiJ_G0017960)	Krt28 (MGP_SPRETEiJ_G0017959)	Krt27 (MGP_SPRETEiJ_G0017958)	Krt26 (MGP_SPRETEiJ_G0017957) #23	Krt25 (MGP_SPRETEiJ_G0017956)	Krt24 (MGP_SPRETEiJ_G0017955) #24	Krt222 (MGP_SPRETEiJ_G0017954) #25	Smarce1 (MGP_SPRETEiJ_G0017953) #26	Ccr7 (MGP_SPRETEiJ_G0017952) #27	Tns4 (MGP_SPRETEiJ_G0017951) #28	Igfbp4 (MGP_SPRETEiJ_G0017950) #29	Top2a (MGP_SPRETEiJ_G0017949) #30	Gjd3 (MGP_SPRETEiJ_G0017948) #31	Rara (MGP_SPRETEiJ_G0017947) #32	Cdc6 (MGP_SPRETEiJ_G0017946) #33
Ryukyu mouse	MODERN SPECIES	2	MGP_CAROLIEiJ_G0017132	MGP_CAROLIEiJ_G0017131	Gm11938 (MGP_CAROLIEiJ_G0017130)	Krtap9-3 (MGP_CAROLIEiJ_G0017129)	Krtap1-3 (MGP_CAROLIEiJ_G0017128)	Krtap1-4 (MGP_CAROLIEiJ_G0017127)	Krtap1-5 (MGP_CAROLIEiJ_G0017126)	Krtap3-1 (MGP_CAROLIEiJ_G0017125)	Gm11939 (MGP_CAROLIEiJ_G0017124)	MGP_CAROLIEiJ_G0017123	MGP_CAROLIEiJ_G0017122	Krt40 (MGP_CAROLIEiJ_G0017121)	Krt39 (MGP_CAROLIEiJ_G0017120)	Krt23 (MGP_CAROLIEiJ_G0017119)	Krt20 (MGP_CAROLIEiJ_G0017118)	Krt12 (MGP_CAROLIEiJ_G0017117) #22	Krt10 (MGP_CAROLIEiJ_G0017116)	Krt28 (MGP_CAROLIEiJ_G0017115)	Krt27 (MGP_CAROLIEiJ_G0017114)	Krt26 (MGP_CAROLIEiJ_G0017113) #23	Krt25 (MGP_CAROLIEiJ_G0017112)	Krt24 (MGP_CAROLIEiJ_G0017111) #24	Krt222 (MGP_CAROLIEiJ_G0017110) #25	Smarce1 (MGP_CAROLIEiJ_G0017109) #26	Ccr7 (MGP_CAROLIEiJ_G0017108) #27	Tns4 (MGP_CAROLIEiJ_G0017107) #28	Igfbp4 (MGP_CAROLIEiJ_G0017106) #29	Top2a (MGP_CAROLIEiJ_G0017105) #30	Gjd3 (MGP_CAROLIEiJ_G0017104) #31	Rara (MGP_CAROLIEiJ_G0017103) #32	Cdc6 (MGP_CAROLIEiJ_G0017102) #33
Shrew mouse	MODERN SPECIES	5	MGP_PahariEiJ_G0018261	MGP_PahariEiJ_G0018260	MGP_PahariEiJ_G0018259	Krtap9-3 (MGP_PahariEiJ_G0018258)	MGP_PahariEiJ_G0018257	Krtap1-4 (MGP_PahariEiJ_G0018256)	Krtap1-5 (MGP_PahariEiJ_G0018255)	Krtap3-1 (MGP_PahariEiJ_G0018254)	Gm11939 (MGP_PahariEiJ_G0018253)	MGP_PahariEiJ_G0018252	MGP_PahariEiJ_G0018251	Krt40 (MGP_PahariEiJ_G0018250)	Krt39 (MGP_PahariEiJ_G0018249)	Krt23 (MGP_PahariEiJ_G0018248)	Krt20 (MGP_PahariEiJ_G0018247)	Krt12 (MGP_PahariEiJ_G0018246) #22	Krt10 (MGP_PahariEiJ_G0018245)	MGP_PahariEiJ_G0018244	Krt27 (MGP_PahariEiJ_G0018243)	Krt26 (MGP_PahariEiJ_G0018242) #23	Krt25 (MGP_PahariEiJ_G0018241)	Krt24 (MGP_PahariEiJ_G0018240) #24	Krt222 (MGP_PahariEiJ_G0018239) #25	Smarce1 (MGP_PahariEiJ_G0018238) #26	Ccr7 (MGP_PahariEiJ_G0018237) #27	Tns4 (MGP_PahariEiJ_G0018236) #28	MGP_PahariEiJ_G0018235 #29	Top2a (MGP_PahariEiJ_G0018234) #30	Gjd3 (MGP_PahariEiJ_G0018233) #31	Rara (MGP_PahariEiJ_G0018232) #32	Cdc6 (MGP_PahariEiJ_G0018231) #33
Rat	MODERN SPECIES	1	Krtap2-4l (ENSRNOG00000060847)	Krtap2-1 (ENSRNOG00000065269)	RGD1561684 (ENSRNOG00000063772)	LOC100365588 (ENSRNOG00000053283)	Krtap1-3 (ENSRNOG00000052388)	Krtap1-1 (ENSRNOG00000012955)	Krtap1-5 (ENSRNOG00000054186)	Krtap3-1 (ENSRNOG00000012544)	LOC120095334 (ENSRNOG00000060205)	Krtap3-2 (ENSRNOG00000049383)	Krtap3-3 (ENSRNOG00000045678)	Krt40 (ENSRNOG00000013896)	Krt39 (ENSRNOG00000031422)	Krt23 (ENSRNOG00000011907)	Krt20 (ENSRNOG00000027139)	Krt12 (ENSRNOG00000011986) #22	Krt10 (ENSRNOG00000030170)	Krt28 (ENSRNOG00000011846)	Krt27 (ENSRNOG00000011628)	Krt26 (ENSRNOG00000033617) #23	Krt25 (ENSRNOG00000011196)	Krt24 (ENSRNOG00000010970) #24	Krt222 (ENSRNOG00000010839) #25	Smarce1 (ENSRNOG00000010676) #26	Ccr7 (ENSRNOG00000010665) #27	Tns4 (ENSRNOG00000027350) #28	Igfbp4 (ENSRNOG00000010635) #29	Top2a (ENSRNOG00000053047) #30	Gjd3 (ENSRNOG00000051691) #31	Rara (ENSRNOG00000009972) #32	Cdc6 (ENSRNOG00000027787) #33
Upper Galilee mountains blind mole rat	MODERN SPECIES	912	ENSNGAG00000014947	ENSNGAG00000015529	ENSNGAG00000015518	ENSNGAG00000016313	ENSNGAG00000015404	ENSNGAG00000011138	Krtap1-4 (ENSNGAG00000014313)	Krtap1-5 (ENSNGAG00000013189)	Krtap3-1 (ENSNGAG00000014967)	ENSNGAG00000014681	ENSNGAG00000015155	Krt40 (ENSNGAG00000002573)	Krt39 (ENSNGAG00000017057)	Krt23 (ENSNGAG00000003686)	Krt20 (ENSNGAG00000012272)	Krt12 (ENSNGAG00000017518) #22	Krt10 (ENSNGAG00000017006)	Krt28 (ENSNGAG00000020295)	Krt27 (ENSNGAG00000019608)	Krt26 (ENSNGAG00000010579) #23	Krt25 (ENSNGAG00000000113)	Krt24 (ENSNGAG00000017103) #24	Krt222 (ENSNGAG00000014550) #25	ENSNGAG00000015419 #26	Ccr7 (ENSNGAG00000010036) #27
Lesser Egyptian jerboa	MODERN SPECIES	56	ENSJJAG00000022802 #21	ENSJJAG00000021359 #21	ENSJJAG00000021927 #21	ENSJJAG00000022794	ENSJJAG00000006288	ENSJJAG00000005972	ENSJJAG00000022051	ENSJJAG00000006226	Krtap3-1 (ENSJJAG00000006011)	ENSJJAG00000006371	ENSJJAG00000006041	Krt40 (ENSJJAG00000022059)	Krt39 (ENSJJAG00000021955)	Krt23 (ENSJJAG00000022215)	Krt20 (ENSJJAG00000022728)	Krt12 (ENSJJAG00000021975) #22	Krt10 (ENSJJAG00000022778)	Krt28 (ENSJJAG00000022837)	Krt27 (ENSJJAG00000023044)	Krt26 (ENSJJAG00000009739) #23	Krt25 (ENSJJAG00000023627)	Krt24 (ENSJJAG00000023143) #24	Krt222 (ENSJJAG00000021966) #25	Smarce1 (ENSJJAG00000023161) #26	Ccr7 (ENSJJAG00000002196) #27	Tns4 (ENSJJAG00000003969) #28	Igfbp4 (ENSJJAG00000000680) #29	Top2a (ENSJJAG00000007045) #30	Gjd3 (ENSJJAG00000009539) #31	Rara (ENSJJAG00000001668) #32	Cdc6 (ENSJJAG00000022817) #33
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000163931	ENSGT00940000154448.b.b.b.b.e.a	ENSGT00940000159486.e.a	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000162736	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000163658	ENSGT00940000164459	ENSGT00940000156135	ENSGT00940000163931	ENSGT00940000155433	ENSGT00940000162736	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005002182	ENSSVLG00005002196	ENSSVLG00005002212	ENSSVLG00005002228	ENSSVLG00005002240	ENSSVLG00005002256	KRTAP3-1 (ENSSVLG00005002274)	ENSSVLG00005002286	ENSSVLG00005002295	ENSSVLG00005002312	KRT40 (ENSSVLG00005002328)	KRT39 (ENSSVLG00005002361)	KRT23 (ENSSVLG00005002405)	KRT20 (ENSSVLG00005002465)	ENSSVLG00005002497 #22	ENSSVLG00005002521 #22	KRT10 (ENSSVLG00005002550)	KRT28 (ENSSVLG00005002575)	KRT27 (ENSSVLG00005002600)	KRT26 (ENSSVLG00005002624) #23	KRT25 (ENSSVLG00005002659)	KRT24 (ENSSVLG00005002690) #24	ENSSVLG00005002717	ENSSVLG00005002734	KRT222 (ENSSVLG00005002764) #25	SMARCE1 (ENSSVLG00005002799) #26	CCR7 (ENSSVLG00005002834) #27	TNS4 (ENSSVLG00005002865) #28	IGFBP4 (ENSSVLG00005002915) #29	TOP2A (ENSSVLG00005002957) #30	GJD3 (ENSSVLG00005002978) #31
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005002159	ENSSVLG00005002182	ENSSVLG00005002196	ENSSVLG00005002212	ENSSVLG00005002228	ENSSVLG00005002240	ENSSVLG00005002256	KRTAP3-1 (ENSSVLG00005002274)	ENSSVLG00005002286	ENSSVLG00005002295	ENSSVLG00005002312	KRT40 (ENSSVLG00005002328)	KRT39 (ENSSVLG00005002361)	KRT23 (ENSSVLG00005002405)	KRT20 (ENSSVLG00005002465)	ENSSVLG00005002497 #22	ENSSVLG00005002521 #22	KRT10 (ENSSVLG00005002550)	KRT28 (ENSSVLG00005002575)	KRT27 (ENSSVLG00005002600)	KRT26 (ENSSVLG00005002624) #23	KRT25 (ENSSVLG00005002659)	KRT24 (ENSSVLG00005002690) #24	ENSSVLG00005002717	ENSSVLG00005002734	KRT222 (ENSSVLG00005002764) #25	SMARCE1 (ENSSVLG00005002799) #26	CCR7 (ENSSVLG00005002834) #27	TNS4 (ENSSVLG00005002865) #28	IGFBP4 (ENSSVLG00005002915) #29	TOP2A (ENSSVLG00005002957) #30
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000161991 #18	ENSGT00940000153980.j.a.b.b.c.a #21	ENSGT00940000163426	ENSGT00940000153980.j.a.b.b.c.b #21	ENSGT00940000153980.j.a.b.b.d #21	ENSGT00860000136155	ENSGT00940000163658	ENSGT00940000164459	ENSGT00390000001157.B	ENSGT00390000001157.C.gc.b	ENSGT00390000001157.C.gc.a	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000153980.j.a.b.b.c.a #21	ENSGT00940000153980.j.a.a #21	ENSGT00940000153980.j.a.b.b.c.b #21	ENSGT00940000153980.j.a.b.b.d #21	ENSGT00940000163416	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.B	ENSGT00390000001157.C.gc.b	ENSGT00390000001157.C.gc.a	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Arctic ground squirrel	MODERN SPECIES	46	KRTAP16-1 (ENSUPAG00010008810)	KRTAP29-1 (ENSUPAG00010008797)	ENSUPAG00010008769	ENSUPAG00010008754	ENSUPAG00010008750	ENSUPAG00010008626	ENSUPAG00010008623	ENSUPAG00010008620	ENSUPAG00010008616	ENSUPAG00010008611	ENSUPAG00010008604	KRT40 (ENSUPAG00010008559)	KRT39 (ENSUPAG00010008539)	KRT23 (ENSUPAG00010008531)	KRT20 (ENSUPAG00010008517)	KRT12 (ENSUPAG00010008495) #22	KRT10 (ENSUPAG00010008483)	KRT28 (ENSUPAG00010008467)	KRT27 (ENSUPAG00010008459)	KRT26 (ENSUPAG00010008447) #23	KRT25 (ENSUPAG00010008441)	KRT24 (ENSUPAG00010008434) #24	KRT222 (ENSUPAG00010008427) #25	SMARCE1 (ENSUPAG00010008422) #26	CCR7 (ENSUPAG00010008418) #27	TNS4 (ENSUPAG00010008407) #28	IGFBP4 (ENSUPAG00010008401) #29	TOP2A (ENSUPAG00010008363) #30	RARA (ENSUPAG00010008330) #32	CDC6 (ENSUPAG00010008314) #33	WIPF2 (ENSUPAG00010008280) #34
Squirrel	MODERN SPECIES	90	ENSSTOG00000013195 #21	ENSSTOG00000031988	ENSSTOG00000032994	ENSSTOG00000033084	ENSSTOG00000027734	ENSSTOG00000023947	ENSSTOG00000029114	ENSSTOG00000021731	ENSSTOG00000012673	ENSSTOG00000012507	ENSSTOG00000027131	ENSSTOG00000025033	ENSSTOG00000019917	KRT39 (ENSSTOG00000013190)	KRT23 (ENSSTOG00000013795)	KRT12 (ENSSTOG00000013295) #22	KRT10 (ENSSTOG00000002204)	KRT28 (ENSSTOG00000032131)	KRT27 (ENSSTOG00000002187)	KRT26 (ENSSTOG00000034065) #23	KRT25 (ENSSTOG00000002183)	KRT24 (ENSSTOG00000002178) #24	KRT222 (ENSSTOG00000029003) #25	SMARCE1 (ENSSTOG00000002175) #26	CCR7 (ENSSTOG00000001864) #27	TNS4 (ENSSTOG00000004876) #28	IGFBP4 (ENSSTOG00000029166) #29	TOP2A (ENSSTOG00000004794) #30	GJD3 (ENSSTOG00000019754) #31	RARA (ENSSTOG00000004746) #32	CDC6 (ENSSTOG00000004716) #33
Alpin marmot	MODERN SPECIES	42	ENSMMMG00000006802 #21	ENSMMMG00000007015	KRTAP16-1 (ENSMMMG00000007017)	ENSMMMG00000007037	ENSMMMG00000007061	ENSMMMG00000007085	ENSMMMG00000007146	ENSMMMG00000007150	ENSMMMG00000007156	ENSMMMG00000007160	ENSMMMG00000007167	KRT40 (ENSMMMG00000007173)	KRT39 (ENSMMMG00000007199)	KRT23 (ENSMMMG00000007227)	KRT20 (ENSMMMG00000007239)	KRT12 (ENSMMMG00000007259) #22	KRT10 (ENSMMMG00000007279)	KRT28 (ENSMMMG00000007288)	KRT27 (ENSMMMG00000007294)	KRT26 (ENSMMMG00000007307) #23	KRT25 (ENSMMMG00000007316)	KRT24 (ENSMMMG00000007326) #24	KRT222 (ENSMMMG00000007351) #25	SMARCE1 (ENSMMMG00000007365) #26	CCR7 (ENSMMMG00000007384) #27	TNS4 (ENSMMMG00000007390) #28	IGFBP4 (ENSMMMG00000007401) #29	TOP2A (ENSMMMG00000007405) #30	RARA (ENSMMMG00000007451) #32	CDC6 (ENSMMMG00000007492) #33	WIPF2 (ENSMMMG00000007511) #34
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000163658	ENSGT00940000156135	ENSGT00940000154448.b.b.b.b.e.b.b	ENSGT00940000159486.f	ENSGT00940000164263	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00390000018397	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000153980.j.a.a #21	ENSGT00940000163658	ENSGT00940000156135	ENSGT00940000154448.b.b.b.b.e.b.b	ENSGT00940000163931	ENSGT00940000159486.e.a	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00390000018397	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000153980.j.a.a #21	ENSGT00940000163658	ENSGT00940000156135	ENSGT00940000154448.b.b.b.b.e.b.b	ENSGT00940000163931	ENSGT00940000159486.e.a	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00390000018397	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Long-tailed chinchilla	MODERN SPECIES	158	ENSCLAG00000015082	ENSCLAG00000017906	ENSCLAG00000015077	ENSCLAG00000015152	ENSCLAG00000018011	ENSCLAG00000013798	ENSCLAG00000018055	ENSCLAG00000015264	ENSCLAG00000017986	ENSCLAG00000018003	KRTAP3-1 (ENSCLAG00000017980)	ENSCLAG00000017863	KRT40 (ENSCLAG00000014940)	KRT39 (ENSCLAG00000013824)	KRT23 (ENSCLAG00000014628)	KRT12 (ENSCLAG00000015867) #22	KRT10 (ENSCLAG00000017300)	KRT26 (ENSCLAG00000016281) #23	KRT28 (ENSCLAG00000015353)	KRT24 (ENSCLAG00000015192) #24	KRT222 (ENSCLAG00000016700) #25	SMARCE1 (ENSCLAG00000015303) #26	CCR7 (ENSCLAG00000016277) #27	TNS4 (ENSCLAG00000013766) #28	IGFBP4 (ENSCLAG00000015611) #29	ENSCLAG00000016494	TOP2A (ENSCLAG00000014772) #30	RARA (ENSCLAG00000016604) #32	CDC6 (ENSCLAG00000015306) #33	WIPF2 (ENSCLAG00000015019) #34	RAPGEFL1 (ENSCLAG00000013660) #35
Degu	MODERN SPECIES	97	KRTAP16-1 (ENSODEG00000017880)	ENSODEG00000017810	ENSODEG00000017804	ENSODEG00000017801	ENSODEG00000017790	ENSODEG00000017966	ENSODEG00000017878	ENSODEG00000020458	ENSODEG00000017796	KRTAP3-1 (ENSODEG00000020553)	ENSODEG00000020535	ENSODEG00000020505	KRT40 (ENSODEG00000017770)	KRT39 (ENSODEG00000017870)	KRT23 (ENSODEG00000017766)	KRT12 (ENSODEG00000017798) #22	KRT10 (ENSODEG00000018133)	KRT28 (ENSODEG00000017869)	KRT27 (ENSODEG00000017814)	KRT26 (ENSODEG00000017748) #23	KRT25 (ENSODEG00000017866)	KRT24 (ENSODEG00000017754) #24	KRT222 (ENSODEG00000017765) #25	ENSODEG00000017812 #26	CCR7 (ENSODEG00000017849) #27	TNS4 (ENSODEG00000017791) #28	IGFBP4 (ENSODEG00000017749) #29	RDM1 (ENSODEG00000017788)	TOP2A (ENSODEG00000018034) #30	GJD3 (ENSODEG00000017680) #31	RARA (ENSODEG00000017623) #32
Guinea pig	MODERN SPECIES	53	ENSCPOG00000039942	ENSCPOG00000031771	ENSCPOG00000040575	ENSCPOG00000037983	ENSCPOG00000030187	ENSCPOG00000034760	ENSCPOG00000031237	ENSCPOG00000038991	ENSCPOG00000009368	KRTAP3-1 (ENSCPOG00000011046)	ENSCPOG00000038722	ENSCPOG00000011044	KRT40 (ENSCPOG00000011037)	KRT39 (ENSCPOG00000011033)	KRT23 (ENSCPOG00000011030)	ENSCPOG00000034129 #22	ENSCPOG00000033395	ENSCPOG00000036632	KRT28 (ENSCPOG00000033049)	KRT27 (ENSCPOG00000030964)	KRT26 (ENSCPOG00000038591) #23	KRT25 (ENSCPOG00000000495)	KRT24 (ENSCPOG00000032839) #24	KRT222 (ENSCPOG00000023380) #25	SMARCE1 (ENSCPOG00000000173) #26	CCR7 (ENSCPOG00000031024) #27	TNS4 (ENSCPOG00000010254) #28	IGFBP4 (ENSCPOG00000008055) #29	ENSCPOG00000001495	TOP2A (ENSCPOG00000006799) #30	GJD3 (ENSCPOG00000039750) #31
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000033664	ENSHGLG00000011418	ENSHGLG00000046541	ENSHGLG00000048443	ENSHGLG00000016152	ENSHGLG00000036467	ENSHGLG00000045568	ENSHGLG00000020641	KRTAP3-1 (ENSHGLG00000020885)	ENSHGLG00000044225	ENSHGLG00000049120	ENSHGLG00000032503	KRT40 (ENSHGLG00000014814)	KRT39 (ENSHGLG00000009907)	KRT23 (ENSHGLG00000012804)	KRT12 (ENSHGLG00000014783) #22	KRT10 (ENSHGLG00000010577)	KRT28 (ENSHGLG00000012817)	KRT26 (ENSHGLG00000018049) #23	KRT25 (ENSHGLG00000016382)	KRT24 (ENSHGLG00000016476) #24	KRT222 (ENSHGLG00000014433) #25	SMARCE1 (ENSHGLG00000014523) #26	ENSHGLG00000031415	CCR7 (ENSHGLG00000009998) #27	TNS4 (ENSHGLG00000011575) #28	IGFBP4 (ENSHGLG00000009899) #29	ENSHGLG00000011280	TOP2A (ENSHGLG00000012875) #30	GJD3 (ENSHGLG00000014304) #31	RARA (ENSHGLG00000038969) #32
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000163931	ENSGT00940000159486.f	ENSGT00940000164263	ENSGT00940000154448.b.b.b.b.e.b.b	ENSGT00940000159486.e.a	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Rabbit	MODERN SPECIES	10	ENSOCUG00000036372	ENSOCUG00000021896	ENSOCUG00000031432	ENSOCUG00000030603	ENSOCUG00000032281	ENSOCUG00000036283	ENSOCUG00000008528	ENSOCUG00000029827	KRTAP3-1 (ENSOCUG00000015615)	ENSOCUG00000031203	ENSOCUG00000024778	ENSOCUG00000024352	KRT40 (ENSOCUG00000015603)	KRT39 (ENSOCUG00000015593)	KRT23 (ENSOCUG00000017694)	KRT12 (ENSOCUG00000017689) #22	KRT28 (ENSOCUG00000015132)	KRT10 (ENSOCUG00000011731)	KRT26 (ENSOCUG00000008999) #23	KRT25 (ENSOCUG00000008992)	KRT222 (ENSOCUG00000027447) #25	SMARCE1 (ENSOCUG00000008981) #26	CCR7 (ENSOCUG00000025569) #27	TNS4 (ENSOCUG00000002830) #28	IGFBP4 (ENSOCUG00000002828) #29	TOP2A (ENSOCUG00000002814) #30	GJD3 (ENSOCUG00000004916) #31	RARA (ENSOCUG00000004903) #32	CDC6 (ENSOCUG00000004898) #33	ENSOCUG00000029564 #34	RAPGEFL1 (ENSOCUG00000023409) #35
Pika	MODERN SPECIES	4691														KRT23 (ENSOPRG00000009842)	KRT20 (ENSOPRG00000009828)	KRT12 (ENSOPRG00000009810) #22	ENSOPRG00000009788	ENSOPRG00000018471	KRT27 (ENSOPRG00000009774)	KRT26 (ENSOPRG00000009761) #23	KRT25 (ENSOPRG00000009745)	KRT24 (ENSOPRG00000009728) #24	KRT222 (ENSOPRG00000018441) #25
Tree shrew	MODERN SPECIES	4713															KRT20 (ENSTBEG00000016636)	KRT12 (ENSTBEG00000016553) #22
Primates	ANCESTRAL SPECIES	3	ENSGT00940000163416	ENSGT00940000164263	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000163931	ENSGT00940000163975	ENSGT00940000162736	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT00940000164415	ENSGT00390000003628.b.c.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00940000156135	ENSGT00940000163416	ENSGT00940000164263	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000163931	ENSGT00940000163975	ENSGT00940000162736	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT00940000164415	ENSGT00390000003628.b.c.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00940000156135.h	ENSGT00940000164350.B	ENSGT00940000164263	ENSGT00940000163931	ENSGT00940000159486	ENSGT00940000163975	ENSGT00940000154448.b.b.b.b	ENSGT00940000162736	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d.p.b #26	ENSGT00940000164415	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00940000163975	ENSGT00940000165435	ENSGT00940000154448.b.b.b.b	ENSGT00940000164350.B	ENSGT00940000164350.A	ENSGT00940000165697	ENSGT00940000162736	ENSGT00940000160443.o	ENSGT00940000160443.p	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00390000016445	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00940000164350.A	ENSGT00940000164350.B	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000162736	ENSGT00940000160443.o.a	ENSGT00940000160443.o.b.a	ENSGT00940000160443.p	ENSGT00940000160443.o.b.b	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00390000016445	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Hominidae	ANCESTRAL SPECIES	16	ENSGT00940000164350.B	ENSGT00940000154448.b.b.b.b	ENSGT00940000165435	ENSGT00940000163975.e.b	ENSGT00940000159486	ENSGT00940000162736	ENSGT00940000160443.o.a	ENSGT00940000160443.p	ENSGT00940000160443.o.b.b	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00390000016445	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00940000163975.e.b	ENSGT00940000163975.e.a.b	ENSGT00940000163975.e.a.a	ENSGT00940000159486	ENSGT00940000162736.w.a	ENSGT00940000160443.o.a	ENSGT00940000160443.o.b.a	ENSGT00940000160443.p	ENSGT00940000160443.o.b.b	ENSGT00390000001157.A.b	ENSGT00390000001157.C.x	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00390000016445	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Gorilla	MODERN SPECIES	18	ENSGGOG00000043973	ENSGGOG00000036943	ENSGGOG00000038087	ENSGGOG00000040059	ENSGGOG00000041957	KRTAP1-1 (ENSGGOG00000016411)	KRTAP1-3 (ENSGGOG00000008142)	ENSGGOG00000027718	KRTAP3-1 (ENSGGOG00000025337)	ENSGGOG00000043613	ENSGGOG00000038810	KRT40 (ENSGGOG00000006511)	KRT39 (ENSGGOG00000017063)	KRT23 (ENSGGOG00000025840)	KRT20 (ENSGGOG00000004278)	KRT12 (ENSGGOG00000004274) #22	ENSGGOG00000038478	KRT10 (ENSGGOG00000000457)	KRT28 (ENSGGOG00000009707)	KRT27 (ENSGGOG00000013291)	KRT26 (ENSGGOG00000011236) #23	KRT25 (ENSGGOG00000043356)	KRT24 (ENSGGOG00000009695) #24	KRT222 (ENSGGOG00000013714) #25	SMARCE1 (ENSGGOG00000011803) #26	CCR7 (ENSGGOG00000016340) #27	TNS4 (ENSGGOG00000009684) #28	IGFBP4 (ENSGGOG00000009883) #29	TOP2A (ENSGGOG00000012704) #30	GJD3 (ENSGGOG00000003119) #31	ENSGGOG00000003114 #32
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00940000163975.e.a.b	ENSGT00940000163975.e.a.a	ENSGT00940000159486	ENSGT00940000162736.w.a	ENSGT00940000160443.o.a	ENSGT00940000160443.o.b.a	ENSGT00940000160443.p	ENSGT00940000160443.o.b.b	ENSGT00390000001157.A.b	ENSGT00390000001157.C.x	ENSGT00390000001157.C.w	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Human	MODERN SPECIES	8	KRTAP2-4 (ENSG00000213417)	KRTAP2-3 (ENSG00000212724)	KRTAP2-2 (ENSG00000214518)	KRTAP2-1 (ENSG00000212725)	KRTAP1-1 (ENSG00000188581)	KRTAP1-3 (ENSG00000221880)	KRTAP1-4 (ENSG00000204887)	KRTAP1-5 (ENSG00000221852)	KRTAP3-1 (ENSG00000212901)	KRTAP3-2 (ENSG00000212900)	KRTAP3-3 (ENSG00000212899)	KRT40 (ENSG00000204889)	KRT39 (ENSG00000196859)	KRT23 (ENSG00000108244)	KRT20 (ENSG00000171431)	KRT12 (ENSG00000187242) #22	KRT10 (ENSG00000186395)	KRT28 (ENSG00000173908)	KRT27 (ENSG00000171446)	KRT26 (ENSG00000186393) #23	KRT25 (ENSG00000204897)	KRT24 (ENSG00000167916) #24	KRT222 (ENSG00000213424) #25	SMARCE1 (ENSG00000073584) #26	CCR7 (ENSG00000126353) #27	TNS4 (ENSG00000131746) #28	IGFBP4 (ENSG00000141753) #29	TOP2A (ENSG00000131747) #30	GJD3 (ENSG00000183153) #31	RARA (ENSG00000131759) #32	CDC6 (ENSG00000094804) #33
Pan	ANCESTRAL SPECIES	3	ENSGT00940000165435	ENSGT00940000163975.e.b.b	ENSGT00940000163975.f	ENSGT00940000163975.e.b.a	ENSGT00940000162736.w.a	ENSGT00940000160443.o.a	ENSGT00940000160443.o.b.a	ENSGT00940000160443.p	ENSGT00940000160443.o.b.b	ENSGT00390000001157.A.b	ENSGT00390000001157.C.x	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Chimpanzee	MODERN SPECIES	8	KRTAP4-11 (ENSPTRG00000043038)	ENSPTRG00000009149	ENSPTRG00000042904	ENSPTRG00000030932	KRTAP1-1 (ENSPTRG00000042384)	KRTAP1-3 (ENSPTRG00000039138)	KRTAP1-4 (ENSPTRG00000043306)	KRTAP1-5 (ENSPTRG00000009145)	KRTAP3-1 (ENSPTRG00000009141)	ENSPTRG00000048871	ENSPTRG00000049793	KRT40 (ENSPTRG00000030928)	KRT39 (ENSPTRG00000023017)	KRT23 (ENSPTRG00000009137)	KRT20 (ENSPTRG00000009135)	KRT12 (ENSPTRG00000009134) #22	KRT10 (ENSPTRG00000009132)	KRT28 (ENSPTRG00000009131)	KRT27 (ENSPTRG00000009130)	KRT26 (ENSPTRG00000030927) #23	KRT25 (ENSPTRG00000009129)	KRT24 (ENSPTRG00000009128) #24	KRT222 (ENSPTRG00000034332) #25	SMARCE1 (ENSPTRG00000022902) #26	CCR7 (ENSPTRG00000009125) #27	TNS4 (ENSPTRG00000009124) #28	IGFBP4 (ENSPTRG00000009123) #29	TOP2A (ENSPTRG00000009122) #30	GJD3 (ENSPTRG00000009121) #31	RARA (ENSPTRG00000009120) #32	CDC6 (ENSPTRG00000009119) #33
Bonobo	MODERN SPECIES	8	ENSPPAG00000035558	ENSPPAG00000034671	ENSPPAG00000043333	ENSPPAG00000024926	ENSPPAG00000000910	ENSPPAG00000036449	KRTAP1-1 (ENSPPAG00000017831)	KRTAP1-4 (ENSPPAG00000021249)	KRTAP1-5 (ENSPPAG00000012582)	KRTAP3-1 (ENSPPAG00000018240)	ENSPPAG00000022850	KRT40 (ENSPPAG00000031205)	KRT39 (ENSPPAG00000041593)	KRT23 (ENSPPAG00000030794)	KRT20 (ENSPPAG00000031348)	KRT12 (ENSPPAG00000034686) #22	KRT10 (ENSPPAG00000039195)	KRT28 (ENSPPAG00000027727)	KRT27 (ENSPPAG00000038824)	KRT26 (ENSPPAG00000043196) #23	KRT25 (ENSPPAG00000030815)	ENSPPAG00000032199 #24	KRT222 (ENSPPAG00000027422) #25	SMARCE1 (ENSPPAG00000037636) #26	CCR7 (ENSPPAG00000042341) #27	TNS4 (ENSPPAG00000028272) #28	ENSPPAG00000034557 #29	TOP2A (ENSPPAG00000043649) #30	ENSPPAG00000043874 #32	CDC6 (ENSPPAG00000038406) #33	WIPF2 (ENSPPAG00000041889) #34
Orangutan	MODERN SPECIES	8	KRTAP4-8 (ENSPPYG00000008438)	ENSPPYG00000008437	ENSPPYG00000036502	ENSPPYG00000030171	ENSPPYG00000037202	KRTAP1-1 (ENSPPYG00000008442)	KRTAP1-4 (ENSPPYG00000008958)	KRTAP1-5 (ENSPPYG00000008959)	KRTAP3-1 (ENSPPYG00000035960)	ENSPPYG00000041168	ENSPPYG00000035156	KRT40 (ENSPPYG00000008445)	KRT39 (ENSPPYG00000008446)	KRT23 (ENSPPYG00000008447)	KRT20 (ENSPPYG00000030597)	KRT12 (ENSPPYG00000041076) #22	ENSPPYG00000008448	KRT10 (ENSPPYG00000008449)	KRT28 (ENSPPYG00000008450)	KRT27 (ENSPPYG00000008451)	KRT26 (ENSPPYG00000008452) #23	KRT25 (ENSPPYG00000008453)	KRT24 (ENSPPYG00000008454) #24	KRT222 (ENSPPYG00000008455) #25	SMARCE1 (ENSPPYG00000008456) #26	CCR7 (ENSPPYG00000008457) #27	TNS4 (ENSPPYG00000040458) #28	IGFBP4 (ENSPPYG00000039119) #29	TOP2A (ENSPPYG00000008460) #30	GJD3 (ENSPPYG00000008461) #31	RARA (ENSPPYG00000008462) #32
Gibbon	MODERN SPECIES	9	ETV4 (ENSNLEG00000005715)	ENSNLEG00000026769	ENSNLEG00000031604	ARL4D (ENSNLEG00000032904)	KRTAP4-11 (ENSNLEG00000002385)	KRTAP4-9 (ENSNLEG00000002384)	ENSNLEG00000002382	KRTAP1-5 (ENSNLEG00000029608)	KRTAP1-4 (ENSNLEG00000002379)	ENSNLEG00000036039	ENSNLEG00000036205	KRT40 (ENSNLEG00000002340)	KRT39 (ENSNLEG00000002318)	KRT23 (ENSNLEG00000002316)	KRT20 (ENSNLEG00000002280)	KRT12 (ENSNLEG00000002251) #22	KRT10 (ENSNLEG00000002202)	KRT28 (ENSNLEG00000027288)	KRT27 (ENSNLEG00000002229)	KRT26 (ENSNLEG00000002206) #23	ENSNLEG00000002204	KRT25 (ENSNLEG00000002158)	KRT24 (ENSNLEG00000002105) #24	KRT222 (ENSNLEG00000002095) #25	SMARCE1 (ENSNLEG00000001957) #26	CCR7 (ENSNLEG00000001950) #27	TNS4 (ENSNLEG00000001944) #28	IGFBP4 (ENSNLEG00000001919) #29	TOP2A (ENSNLEG00000001840) #30	GJD3 (ENSNLEG00000001839) #31	RARA (ENSNLEG00000001793) #32
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486.y.a	ENSGT00940000163975	ENSGT00940000159486.z	ENSGT00940000162736	ENSGT00940000160443.o.c	ENSGT00940000160443.p	ENSGT00940000160443.o.d.b	ENSGT00940000160443.o.d.a	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00390000016445	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000163975	ENSGT00940000159486.z	ENSGT00940000162736.s.b.a.b	ENSGT00940000162736.s.b.a.a.b	ENSGT00940000162736.s.b.a.a.a	ENSGT00940000160443.o.c	ENSGT00940000160443.o.d.a	ENSGT00940000160443.p	ENSGT00940000160443.o.d.b	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00390000016445	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Vervet Monkey	MODERN SPECIES	7	KRTAP4-7 (ENSCSAG00000002851)	ENSCSAG00000019029	ENSCSAG00000019030	ENSCSAG00000019031	ENSCSAG00000019032	ENSCSAG00000002849	KRTAP1-4 (ENSCSAG00000019033)	ENSCSAG00000019034	KRTAP3-1 (ENSCSAG00000019035)	ENSCSAG00000019036	ENSCSAG00000019037	KRT40 (ENSCSAG00000002848)	KRT39 (ENSCSAG00000002844)	KRT23 (ENSCSAG00000002841)	KRT20 (ENSCSAG00000002839)	KRT12 (ENSCSAG00000002838) #22	KRT10 (ENSCSAG00000002835)	KRT28 (ENSCSAG00000002833)	KRT27 (ENSCSAG00000002830)	KRT26 (ENSCSAG00000002826) #23	KRT25 (ENSCSAG00000002820)	KRT24 (ENSCSAG00000002815) #24	KRT222 (ENSCSAG00000002811) #25	SMARCE1 (ENSCSAG00000002806) #26	CCR7 (ENSCSAG00000002800) #27	TNS4 (ENSCSAG00000002797) #28	IGFBP4 (ENSCSAG00000002792) #29	ENSCSAG00000002791	TOP2A (ENSCSAG00000002790) #30	ENSCSAG00000002788	GJD3 (ENSCSAG00000019038) #31
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00940000163975	ENSGT00940000159486.z	ENSGT00940000162736.s.b.a.b	ENSGT00940000154448.b.b.b.b.m.a	ENSGT00940000162736.t	ENSGT00940000160443.o.c	ENSGT00940000160443.o.d.a	ENSGT00940000160443.p	ENSGT00940000160443.o.d.b	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00390000016445	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000164263	ENSGT00940000163931	ENSGT00940000163975	ENSGT00940000154448.b.b.b.b.m.a	ENSGT00940000162736.t	ENSGT00940000160443.o.c	ENSGT00940000162736.s.a.a.a	ENSGT00940000160443.p	ENSGT00940000160443.o.d.a	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00390000016445	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Olive baboon	MODERN SPECIES	8	ENSPANG00000030200	ENSPANG00000033743	ENSPANG00000032465	ENSPANG00000021570	ENSPANG00000048794	ENSPANG00000049370	ENSPANG00000049731	KRTAP1-4 (ENSPANG00000023265)	ENSPANG00000045487	KRTAP3-1 (ENSPANG00000002591)	ENSPANG00000049303	KRT40 (ENSPANG00000021567)	KRT39 (ENSPANG00000021566)	KRT23 (ENSPANG00000021565)	KRT20 (ENSPANG00000021564)	KRT12 (ENSPANG00000021563) #22	KRT10 (ENSPANG00000021616)	KRT28 (ENSPANG00000032109)	KRT27 (ENSPANG00000021625)	KRT26 (ENSPANG00000021624) #23	KRT25 (ENSPANG00000021623)	KRT24 (ENSPANG00000021622) #24	KRT222 (ENSPANG00000036008) #25	ENSPANG00000021619 #26	CCR7 (ENSPANG00000047079) #27	TNS4 (ENSPANG00000021664) #28	IGFBP4 (ENSPANG00000021663) #29	TOP2A (ENSPANG00000021661) #30	GJD3 (ENSPANG00000021660) #31	RARA (ENSPANG00000021658) #32	CDC6 (ENSPANG00000021657) #33
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00940000163841.c #20	ENSGT00940000153980.j.d #21	ENSGT00940000156135.h.f.a	ENSGT00940000156135.h.f.b.a.b	ENSGT00940000156135.h.f.b.b	ENSGT00940000163975	ENSGT00940000154448.b.b.b.b.m.a	ENSGT00940000162736.t	ENSGT00940000160443.o.c	ENSGT00940000160443.o.d.a	ENSGT00390000001157.A.b	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00390000016445	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Drill	MODERN SPECIES	1283	ENSMLEG00000028300	KRTAP4-1 (ENSMLEG00000039471)	KRTAP4-2 (ENSMLEG00000032197)	KRTAP4-3 (ENSMLEG00000028103)	KRTAP4-5 (ENSMLEG00000014819)	ENSMLEG00000029543	ENSMLEG00000000614	ENSMLEG00000004772	ENSMLEG00000018982	ENSMLEG00000041308	KRTAP3-1 (ENSMLEG00000014783)	KRT40 (ENSMLEG00000029742)	KRT39 (ENSMLEG00000037917)	KRT23 (ENSMLEG00000029121)	KRT20 (ENSMLEG00000039504)	KRT12 (ENSMLEG00000035998) #22	ENSMLEG00000024984	KRT10 (ENSMLEG00000026149)	KRT28 (ENSMLEG00000042231)	KRT27 (ENSMLEG00000043409)	KRT26 (ENSMLEG00000016638) #23	KRT25 (ENSMLEG00000043162)	KRT24 (ENSMLEG00000042485) #24	KRT222 (ENSMLEG00000027116) #25	SMARCE1 (ENSMLEG00000035376) #26	CCR7 (ENSMLEG00000031221) #27	TNS4 (ENSMLEG00000039591) #28	IGFBP4 (ENSMLEG00000038307) #29	TOP2A (ENSMLEG00000040900) #30	RARA (ENSMLEG00000042406) #32	CDC6 (ENSMLEG00000017384) #33
Sooty mangabey	MODERN SPECIES	564	KRT33A (ENSCATG00000039355) #21	ENSCATG00000029615	ENSCATG00000043038	ENSCATG00000042310	KRTAP9-1 (ENSCATG00000041663)	KRTAP4-4 (ENSCATG00000042277)	KRTAP4-3 (ENSCATG00000033768)	ENSCATG00000021011	ENSCATG00000034203	ENSCATG00000037125	KRTAP3-1 (ENSCATG00000021424)	KRT40 (ENSCATG00000034790)	KRT39 (ENSCATG00000036783)	KRT23 (ENSCATG00000040372)	KRT20 (ENSCATG00000039872)	KRT12 (ENSCATG00000039373) #22	ENSCATG00000009301	KRT10 (ENSCATG00000044216)	KRT28 (ENSCATG00000013336)	KRT27 (ENSCATG00000017114)	KRT26 (ENSCATG00000032089) #23	KRT25 (ENSCATG00000032084)	KRT24 (ENSCATG00000040299) #24	KRT222 (ENSCATG00000025409) #25	SMARCE1 (ENSCATG00000033223) #26	CCR7 (ENSCATG00000041409) #27	TNS4 (ENSCATG00000031207) #28	IGFBP4 (ENSCATG00000035081) #29	TOP2A (ENSCATG00000030085) #30	GJD3 (ENSCATG00000021931) #31	RARA (ENSCATG00000044638) #32
Macaca	ANCESTRAL SPECIES	4	ENSGT00950000183407	ENSGT00940000163658	ENSGT00940000164459	ENSGT00940000156135.h.f.a	ENSGT00940000156135.h.f.b.a.a.b.a	ENSGT00940000162736.s.a.a.a	ENSGT00940000160443.o.c	ENSGT00940000160443.o.d.a	ENSGT00940000160443.p	ENSGT00940000160443.o.d.b	ENSGT00390000001157.A.b	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00390000016445	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00940000156135.h.f.b.a.a.b.a	ENSGT00940000156135.h.f.b.a.a.b.b.b	ENSGT00940000163931	ENSGT00940000159486.y.a	ENSGT00940000163975	ENSGT00940000159486.z	ENSGT00940000162736.s.b.a.b	ENSGT00940000160443.o.c	ENSGT00940000160443.o.d.a	ENSGT00940000160443.p	ENSGT00940000160443.o.d.b	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00390000016445	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d.p.a #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Rhesus	MODERN SPECIES	7	KRTAP4-1 (ENSMMUG00000065282)	KRTAP4-2 (ENSMMUG00000045776)	ENSMMUG00000020305	KRTAP4-6 (ENSMMUG00000038207)	ENSMMUG00000045996	ENSMMUG00000050719	ENSMMUG00000062533	ENSMMUG00000053239	ENSMMUG00000020301	ENSMMUG00000020299	KRTAP1-4 (ENSMMUG00000020300)	KRT40 (ENSMMUG00000001142)	KRT39 (ENSMMUG00000001510)	KRT23 (ENSMMUG00000001505)	KRT20 (ENSMMUG00000001503)	KRT12 (ENSMMUG00000001502) #22	ENSMMUG00000043282	KRT10 (ENSMMUG00000001500)	KRT28 (ENSMMUG00000001499)	KRT27 (ENSMMUG00000001497)	KRT26 (ENSMMUG00000001495) #23	KRT25 (ENSMMUG00000001492)	KRT24 (ENSMMUG00000023592) #24	KRT222 (ENSMMUG00000004004) #25	SMARCE1 (ENSMMUG00000004005) #26	CCR7 (ENSMMUG00000002102) #27	TNS4 (ENSMMUG00000009386) #28	IGFBP4 (ENSMMUG00000009384) #29	TOP2A (ENSMMUG00000008941) #30	GJD3 (ENSMMUG00000012489) #31	RARA (ENSMMUG00000012486) #32
Crab-eating macaque	MODERN SPECIES	7	ENSMFAG00000034680	KRTAP4-6 (ENSMFAG00000002460)	ENSMFAG00000028572	KRTAP4-7 (ENSMFAG00000000596)	ENSMFAG00000051497	ENSMFAG00000056804	ENSMFAG00000036831	KRTAP1-4 (ENSMFAG00000001642)	ENSMFAG00000046213	KRT40 (ENSMFAG00000044976)	ENSMFAG00000052202	KRT39 (ENSMFAG00000033201)	ENSMFAG00000060620	KRT23 (ENSMFAG00000038526)	KRT20 (ENSMFAG00000003933)	KRT12 (ENSMFAG00000003650) #22	ENSMFAG00000016338	KRT10 (ENSMFAG00000038850)	KRT28 (ENSMFAG00000040928)	KRT27 (ENSMFAG00000039079)	KRT26 (ENSMFAG00000001350) #23	KRT25 (ENSMFAG00000037286)	KRT24 (ENSMFAG00000039579) #24	KRT222 (ENSMFAG00000035858) #25	ENSMFAG00000042285 #26	CCR7 (ENSMFAG00000032012) #27	TNS4 (ENSMFAG00000001585) #28	IGFBP4 (ENSMFAG00000043180) #29	TOP2A (ENSMFAG00000002270) #30	ENSMFAG00000055548	ENSMFAG00000010310
Pig-tailed macaque	MODERN SPECIES	494	ENSMNEG00000033695	KRTAP4-5 (ENSMNEG00000035983)	ENSMNEG00000035649	ENSMNEG00000045170	ENSMNEG00000042925	ENSMNEG00000001165	ENSMNEG00000023777	ENSMNEG00000038682	ENSMNEG00000043725	ENSMNEG00000029591	KRTAP3-1 (ENSMNEG00000002270)	KRT40 (ENSMNEG00000040425)	KRT39 (ENSMNEG00000045305)	KRT23 (ENSMNEG00000042071)	KRT20 (ENSMNEG00000029478)	KRT12 (ENSMNEG00000004668) #22	ENSMNEG00000032796	KRT10 (ENSMNEG00000035663)	KRT28 (ENSMNEG00000045361)	KRT27 (ENSMNEG00000028793)	KRT26 (ENSMNEG00000044933) #23	KRT25 (ENSMNEG00000035206)	KRT24 (ENSMNEG00000043164) #24	KRT222 (ENSMNEG00000040062) #25	SMARCE1 (ENSMNEG00000010025) #26	CCR7 (ENSMNEG00000030706) #27	TNS4 (ENSMNEG00000040756) #28	IGFBP4 (ENSMNEG00000041735) #29	TOP2A (ENSMNEG00000030734) #30	GJD3 (ENSMNEG00000006880) #31	RARA (ENSMNEG00000029542) #32
Rhinopithecus	ANCESTRAL SPECIES	61			ENSGT00940000165435	ENSGT00940000163975	ENSGT00940000159486.z	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486.y.a	ENSGT00940000162736.q	ENSGT00940000162736.r	ENSGT00940000160443.o.d.a	ENSGT00390000001157.A.b	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00390000016445	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.c.b.a.b.a #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Black snub-nosed monkey	MODERN SPECIES	638	ENSRBIG00000038944	ENSRBIG00000036042	ENSRBIG00000033838	KRTAP4-2 (ENSRBIG00000030295)	ENSRBIG00000029755	ENSRBIG00000040600	ENSRBIG00000025008	ENSRBIG00000027251	ENSRBIG00000029137	ENSRBIG00000038757	KRTAP3-1 (ENSRBIG00000001148)	KRT40 (ENSRBIG00000033402)	KRT39 (ENSRBIG00000031920)	KRT23 (ENSRBIG00000029190)	KRT20 (ENSRBIG00000039923)	KRT12 (ENSRBIG00000028260) #22	ENSRBIG00000033196	KRT10 (ENSRBIG00000042127)	KRT28 (ENSRBIG00000018840)	KRT27 (ENSRBIG00000041899)	KRT26 (ENSRBIG00000036214) #23	KRT25 (ENSRBIG00000044480)	KRT24 (ENSRBIG00000044202) #24	ENSRBIG00000036799 #25	SMARCE1 (ENSRBIG00000040707) #26	CCR7 (ENSRBIG00000036537) #27	TNS4 (ENSRBIG00000032169) #28	IGFBP4 (ENSRBIG00000029579) #29	TOP2A (ENSRBIG00000027893) #30	RARA (ENSRBIG00000029995) #32	CDC6 (ENSRBIG00000042270) #33
Golden snub-nosed monkey	MODERN SPECIES	2684														KRT23 (ENSRROG00000032975)	KRT20 (ENSRROG00000045233)	KRT12 (ENSRROG00000036947) #22	ENSRROG00000034243	KRT10 (ENSRROG00000035060)	KRT28 (ENSRROG00000035612)	KRT27 (ENSRROG00000041641)	KRT26 (ENSRROG00000036051) #23	KRT25 (ENSRROG00000031435)	KRT24 (ENSRROG00000010823) #24	KRT222 (ENSRROG00000005797) #25	SMARCE1 (ENSRROG00000028858) #26	CCR7 (ENSRROG00000038793) #27	TNS4 (ENSRROG00000042906) #28	IGFBP4 (ENSRROG00000033641) #29	TOP2A (ENSRROG00000034836) #30	GJD3 (ENSRROG00000016401) #31	DPH1 (ENSRROG00000027589)
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000164350.B	ENSGT00940000165435	ENSGT00940000163975	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000162736	ENSGT00940000160443.r.b.a	ENSGT00940000160295	ENSGT00940000160443.r.a	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d.p.b #26	ENSGT00940000164415	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31
Cebidae	ANCESTRAL SPECIES	10	ENSGT00940000164350.B	ENSGT00940000163975.c	ENSGT00940000156135.h.b.b	ENSGT00940000165435	ENSGT00940000163975.d	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000162736	ENSGT00940000160443.r.a	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d.p.a #26	ENSGT00940000164415	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00940000156135.h.b.a	ENSGT00940000164350.B	ENSGT00940000163975.c	ENSGT00940000156135.h.a.a	ENSGT00940000165435	ENSGT00940000163975.d	ENSGT00940000154448.b.b.b.b	ENSGT00940000162736	ENSGT00940000160443.r.b.a	ENSGT00940000160443.r.a	ENSGT00390000001157.A.b	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00940000164415	ENSGT00390000003628.b.c.b.a.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Capuchin	MODERN SPECIES	228	ENSCCAG00000034421	ENSCCAG00000020353	ENSCCAG00000035189	ENSCCAG00000026553	ENSCCAG00000030292	ENSCCAG00000030861	ENSCCAG00000022140	ENSCCAG00000024497	ENSCCAG00000017936	ENSCCAG00000021121	ENSCCAG00000022586	KRT40 (ENSCCAG00000032652)	KRT39 (ENSCCAG00000029088)	KRT23 (ENSCCAG00000030267)	KRT20 (ENSCCAG00000032974)	KRT12 (ENSCCAG00000032972) #22	KRT10 (ENSCCAG00000036373)	KRT28 (ENSCCAG00000037023)	KRT27 (ENSCCAG00000009302)	KRT26 (ENSCCAG00000022891) #23	KRT25 (ENSCCAG00000025845)	KRT24 (ENSCCAG00000037342) #24	KRT222 (ENSCCAG00000032779) #25	ENSCCAG00000021368	SMARCE1 (ENSCCAG00000025244) #26	CCR7 (ENSCCAG00000024858) #27	TNS4 (ENSCCAG00000032978) #28	IGFBP4 (ENSCCAG00000029322) #29	TOP2A (ENSCCAG00000025939) #30	ENSCCAG00000031517	RARA (ENSCCAG00000021724) #32
Bolivian squirrel monkey	MODERN SPECIES	208	ENSSBOG00000024889	ENSSBOG00000028255	ENSSBOG00000031036	ENSSBOG00000026326	KRTAP4-5 (ENSSBOG00000024832)	ENSSBOG00000003071	ENSSBOG00000031693	ENSSBOG00000031937	ENSSBOG00000032989	ENSSBOG00000001195	KRTAP3-1 (ENSSBOG00000021282)	KRT40 (ENSSBOG00000033336)	KRT39 (ENSSBOG00000023156)	KRT23 (ENSSBOG00000029946)	KRT20 (ENSSBOG00000020042)	KRT12 (ENSSBOG00000020046) #22	KRT10 (ENSSBOG00000034537)	KRT28 (ENSSBOG00000033194)	KRT26 (ENSSBOG00000031304) #23	KRT24 (ENSSBOG00000020285) #24	KRT222 (ENSSBOG00000035572) #25	SMARCE1 (ENSSBOG00000001180) #26	CCR7 (ENSSBOG00000028714) #27	TNS4 (ENSSBOG00000034575) #28	IGFBP4 (ENSSBOG00000022228) #29	TOP2A (ENSSBOG00000016584) #30	ENSSBOG00000028183	RARA (ENSSBOG00000034538) #32	CDC6 (ENSSBOG00000013277) #33	WIPF2 (ENSSBOG00000029118) #34	RAPGEFL1 (ENSSBOG00000029673) #35
Marmoset	MODERN SPECIES	17	ENSCJAG00000067750	KRTAP4-12 (ENSCJAG00000069967)	ENSCJAG00000082655	ENSCJAG00000081670	ENSCJAG00000080141	ENSCJAG00000074243	ENSCJAG00000083167	ENSCJAG00000038794	KRTAP3-1 (ENSCJAG00000044200)	ENSCJAG00000076427	ENSCJAG00000079566	KRT40 (ENSCJAG00000013706)	KRT39 (ENSCJAG00000013697)	ENSCJAG00000013664	KRT20 (ENSCJAG00000013679)	KRT12 (ENSCJAG00000013609) #22	KRT10 (ENSCJAG00000044765)	KRT24 (ENSCJAG00000034830) #24	KRT222 (ENSCJAG00000035627) #25	ENSCJAG00000013573 #26	CCR7 (ENSCJAG00000075739) #27	TNS4 (ENSCJAG00000013560) #28	IGFBP4 (ENSCJAG00000013550) #29	TOP2A (ENSCJAG00000013478) #30	ENSCJAG00000065689	GJD3 (ENSCJAG00000046154) #31	RARA (ENSCJAG00000013440) #32	CDC6 (ENSCJAG00000011073) #33	ENSCJAG00000081240	ENSCJAG00000031546	TEX14 (ENSCJAG00000073487)
Mas night monkey	MODERN SPECIES	481						KRTAP4-7 (ENSANAG00000028643)	ENSANAG00000033154	ENSANAG00000019385	ENSANAG00000030978	ENSANAG00000031799	KRTAP3-1 (ENSANAG00000014505)	KRT40 (ENSANAG00000031905)	KRT39 (ENSANAG00000037576)	KRT23 (ENSANAG00000033242)	KRT20 (ENSANAG00000037651)	KRT12 (ENSANAG00000031208) #22	KRT10 (ENSANAG00000032560)	KRT28 (ENSANAG00000037757)	KRT27 (ENSANAG00000032615)	KRT26 (ENSANAG00000022112) #23	KRT25 (ENSANAG00000027137)	KRT24 (ENSANAG00000037902) #24	KRT222 (ENSANAG00000023560) #25	ENSANAG00000032353 #26	CCR7 (ENSANAG00000021558) #27	TNS4 (ENSANAG00000036996) #28	IGFBP4 (ENSANAG00000002213) #29	TOP2A (ENSANAG00000025180) #30	ENSANAG00000026269	RARA (ENSANAG00000038222) #32	CDC6 (ENSANAG00000030612) #33
Tarsier	MODERN SPECIES	3915												KRT40 (ENSTSYG00000011333)	KRT39 (ENSTSYG00000008675)	KRT23 (ENSTSYG00000006431)	KRT20 (ENSTSYG00000011001)	KRT12 (ENSTSYG00000010990) #22	KRT10 (ENSTSYG00000009031)	KRT28 (ENSTSYG00000007469)	KRT27 (ENSTSYG00000007457)	KRT26 (ENSTSYG00000011414) #23	KRT25 (ENSTSYG00000009548)	ENSTSYG00000030238	KRT222 (ENSTSYG00000030456) #25	SMARCE1 (ENSTSYG00000012496) #26	CCR7 (ENSTSYG00000028282) #27
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00940000156135	ENSGT00940000163416	ENSGT00940000164263	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000163975	ENSGT00940000162736	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00940000163416	ENSGT00940000164263	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000163975	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00940000160295	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00940000155258.t #13	ENSGT00940000154403.a.a #14	ENSGT00950000183311 #15	ENSGT00940000161311 #16	ENSGT00940000161787 #17	ENSGT00940000161991 #18	ENSGT00940000163444	ENSGT00940000162088 #19	ENSGT00940000153980.i.a #21	ENSGT00940000163426	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b.d #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Coquerels sifaka	MODERN SPECIES	120	KRTAP29-1 (ENSPCOG00000019509)	ENSPCOG00000013137	ENSPCOG00000022603	ENSPCOG00000017090	ENSPCOG00000026553	ENSPCOG00000014377	ENSPCOG00000021181	ENSPCOG00000014598	ENSPCOG00000012200	ENSPCOG00000015985	ENSPCOG00000004823	KRT40 (ENSPCOG00000017920)	KRT39 (ENSPCOG00000024190)	KRT23 (ENSPCOG00000015929)	KRT20 (ENSPCOG00000019180)	KRT12 (ENSPCOG00000013217) #22	ENSPCOG00000023362	KRT10 (ENSPCOG00000018225)	KRT28 (ENSPCOG00000025536)	KRT27 (ENSPCOG00000023758)	KRT26 (ENSPCOG00000025920) #23	KRT25 (ENSPCOG00000016980)	KRT24 (ENSPCOG00000018519) #24	KRT222 (ENSPCOG00000027280) #25	ENSPCOG00000013727 #26	CCR7 (ENSPCOG00000016602) #27	TNS4 (ENSPCOG00000024055) #28	IGFBP4 (ENSPCOG00000013262) #29	TOP2A (ENSPCOG00000025407) #30	RARA (ENSPCOG00000024070) #32	CDC6 (ENSPCOG00000027397) #33
Greater bamboo lemur	MODERN SPECIES	1733											ENSPSMG00000010522	KRT40 (ENSPSMG00000010509)	KRT39 (ENSPSMG00000010491)	KRT23 (ENSPSMG00000010479)	KRT20 (ENSPSMG00000010469)	KRT12 (ENSPSMG00000010461) #22	KRT10 (ENSPSMG00000010450)	KRT28 (ENSPSMG00000010434)	KRT27 (ENSPSMG00000010420)	ENSPSMG00000010390 #23
Mouse lemur	MODERN SPECIES	7	ENSMICG00000043010	ENSMICG00000034211	ENSMICG00000046956	ENSMICG00000007150	ENSMICG00000046748	ENSMICG00000034773	ENSMICG00000007164	ENSMICG00000046104	KRTAP4-3 (ENSMICG00000007155)	ENSMICG00000047933	ENSMICG00000037682	KRT40 (ENSMICG00000009912)	KRT39 (ENSMICG00000009899)	KRT23 (ENSMICG00000009894)	KRT20 (ENSMICG00000035159)	KRT12 (ENSMICG00000009875) #22	KRT10 (ENSMICG00000032358)	KRT28 (ENSMICG00000009865)	KRT27 (ENSMICG00000009856)	KRT26 (ENSMICG00000009852) #23	KRT25 (ENSMICG00000027114)	KRT24 (ENSMICG00000009839) #24	KRT222 (ENSMICG00000032628) #25	ENSMICG00000009821 #26	CCR7 (ENSMICG00000028152) #27	TNS4 (ENSMICG00000009811) #28	IGFBP4 (ENSMICG00000009809) #29	TOP2A (ENSMICG00000009772) #30	RARA (ENSMICG00000029502) #32	CDC6 (ENSMICG00000045842) #33	WIPF2 (ENSMICG00000033471) #34
Bushbaby	MODERN SPECIES	133	ENSOGAG00000031966 #21	ENSOGAG00000011446 #21	ENSOGAG00000034704	ENSOGAG00000003105	KRTAP4-5 (ENSOGAG00000003102)	ENSOGAG00000034870	ENSOGAG00000025341	ENSOGAG00000024366	KRTAP3-1 (ENSOGAG00000003088)	ENSOGAG00000026860	ENSOGAG00000024415	KRT40 (ENSOGAG00000003085)	KRT39 (ENSOGAG00000003083)	KRT23 (ENSOGAG00000003082)	KRT20 (ENSOGAG00000003079)	KRT12 (ENSOGAG00000003076) #22	KRT10 (ENSOGAG00000003075)	KRT28 (ENSOGAG00000003074)	KRT27 (ENSOGAG00000003073)	KRT26 (ENSOGAG00000003070) #23	KRT25 (ENSOGAG00000003068)	KRT24 (ENSOGAG00000014264) #24	KRT222 (ENSOGAG00000024213) #25	ENSOGAG00000001652 #26	CCR7 (ENSOGAG00000001650) #27	TNS4 (ENSOGAG00000001646) #28	IGFBP4 (ENSOGAG00000001644) #29	TOP2A (ENSOGAG00000001638) #30	GJD3 (ENSOGAG00000028723) #31	RARA (ENSOGAG00000024257) #32	CDC6 (ENSOGAG00000008542) #33
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00940000161991 #18	ENSGT00940000153980 #21	ENSGT00940000163658	ENSGT00940000164459	ENSGT00940000156135	ENSGT00940000163931	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161950 #23	ENSGT00940000161982	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00940000161787 #17	ENSGT00940000162088 #19	ENSGT00940000161991 #18	ENSGT00940000153980 #21	ENSGT00940000163426	ENSGT00940000163658	ENSGT00940000156135	ENSGT00940000163931	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00940000161787 #17	ENSGT00940000162088 #19	ENSGT00940000161991 #18	ENSGT00940000153980 #21	ENSGT00940000163426	ENSGT00940000163658	ENSGT00940000156135	ENSGT00940000163931	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000162192	ENSGT00940000161982	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Elephant	MODERN SPECIES	310	ENSLAFG00000017176	ENSLAFG00000028624	ENSLAFG00000020912	ENSLAFG00000007437	ENSLAFG00000007429	ENSLAFG00000007428	ENSLAFG00000007424	ENSLAFG00000007421	ENSLAFG00000020659	ENSLAFG00000022004	KRTAP3-1 (ENSLAFG00000026928)	ENSLAFG00000007419	KRT40 (ENSLAFG00000007415)	KRT39 (ENSLAFG00000007407)	KRT23 (ENSLAFG00000006853)	KRT12 (ENSLAFG00000015639) #22	KRT10 (ENSLAFG00000011407)	KRT28 (ENSLAFG00000022003)	KRT27 (ENSLAFG00000006836)	KRT25 (ENSLAFG00000006830)	KRT24 (ENSLAFG00000000455) #24	KRT222 (ENSLAFG00000020933) #25	SMARCE1 (ENSLAFG00000015555) #26	CCR7 (ENSLAFG00000021527) #27	TNS4 (ENSLAFG00000017735) #28	IGFBP4 (ENSLAFG00000011721) #29	TOP2A (ENSLAFG00000008287) #30	RARA (ENSLAFG00000016234) #32	CDC6 (ENSLAFG00000000608) #33	WIPF2 (ENSLAFG00000011375) #34	ENSLAFG00000031628
Hyrax	MODERN SPECIES	6534													ENSPCAG00000001283	KRT23 (ENSPCAG00000001223)	KRT20 (ENSPCAG00000001155)	KRT12 (ENSPCAG00000001107) #22
Tenrec	MODERN SPECIES	7767																KRT12 (ENSETEG00000019820) #22
Xenarthra	ANCESTRAL SPECIES	42													ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00980000201475	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37
Sloth	MODERN SPECIES	6954															KRT20 (ENSCHOG00000007590)	KRT12 (ENSCHOG00000007575) #22
Armadillo	MODERN SPECIES	691												ENSDNOG00000040032	ENSDNOG00000019941	KRT23 (ENSDNOG00000002451)	KRT20 (ENSDNOG00000019940)	KRT12 (ENSDNOG00000017007) #22	ENSDNOG00000001224	ENSDNOG00000016695	KRT24 (ENSDNOG00000001218) #24	KRT222 (ENSDNOG00000040439) #25	SMARCE1 (ENSDNOG00000007636) #26	ENSDNOG00000042721 #27	TNS4 (ENSDNOG00000031522) #28	IGFBP4 (ENSDNOG00000044382) #29	TOP2A (ENSDNOG00000042715) #30	ENSDNOG00000042346	RARA (ENSDNOG00000046532) #32	WIPF2 (ENSDNOG00000007939) #34	RAPGEFL1 (ENSDNOG00000043103) #35	CASC3 (ENSDNOG00000017249) #36	MSL1 (ENSDNOG00000042904) #37
Marsupialia	ANCESTRAL SPECIES	13														ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000161982.b	ENSGT00940000161982.a	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Marsupialia_b	ANCESTRAL SPECIES	16														ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849	ENSGT00940000161982.b	ENSGT00940000161982.a	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
Diprotodontia	ANCESTRAL SPECIES	9														ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849.k.a	ENSGT00940000160849.k.b	ENSGT00940000161982.b	ENSGT00940000161982.a	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000160849.l	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32
Diprotodontia_a	ANCESTRAL SPECIES	11														ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849.k.a	ENSGT00940000160849.k.b	ENSGT00940000161982.b	ENSGT00940000161982.a	ENSGT00940000161950 #23	ENSGT00940000161994	ENSGT00940000161783 #24	ENSGT00940000160849.l	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT00940000159997 #32
koala	MODERN SPECIES	67					ENSPCIG00000034784	ENSPCIG00000004266	ENSPCIG00000025875	ENSPCIG00000025874	ENSPCIG00000025873	ENSPCIG00000032116	ENSPCIG00000036192	KRT40 (ENSPCIG00000025856)	ENSPCIG00000025848 #16	KRT23 (ENSPCIG00000025846)	KRT20 (ENSPCIG00000025844)	KRT12 (ENSPCIG00000025781) #22	ENSPCIG00000012560	ENSPCIG00000012561	ENSPCIG00000012562	ENSPCIG00000012563	KRT26 (ENSPCIG00000025758) #23	KRT25 (ENSPCIG00000025757)	ENSPCIG00000025755 #24	KRT24 (ENSPCIG00000025753) #24	KRT222 (ENSPCIG00000025748) #25	SMARCE1 (ENSPCIG00000025742) #26	CCR7 (ENSPCIG00000034639) #27	TNS4 (ENSPCIG00000025729) #28	IGFBP4 (ENSPCIG00000025726) #29	TOP2A (ENSPCIG00000025715) #30	RARA (ENSPCIG00000025697) #32
Common wonbat	MODERN SPECIES	1037			ENSVURG00010004380	ENSVURG00010004485	ENSVURG00010004500	ENSVURG00010004575	ENSVURG00010004590	ENSVURG00010004596	ENSVURG00010004603	ENSVURG00010004613	ENSVURG00010004619	KRT40 (ENSVURG00010004631)	ENSVURG00010004646 #16	KRT23 (ENSVURG00010004662)	KRT20 (ENSVURG00010004673)	KRT12 (ENSVURG00010004697) #22	KRT10 (ENSVURG00010004767)	ENSVURG00010004869 #24	KRT24 (ENSVURG00010004908) #24	ENSVURG00010004993	KRT222 (ENSVURG00010005011) #25	SMARCE1 (ENSVURG00010005053) #26	CCR7 (ENSVURG00010005104) #27	TNS4 (ENSVURG00010005120) #28	IGFBP4 (ENSVURG00010005135) #29	TOP2A (ENSVURG00010005155) #30	ENSVURG00010005193 #34	ENSVURG00010005198	RAPGEFL1 (ENSVURG00010005204) #35	CASC3 (ENSVURG00010005220) #36	MSL1 (ENSVURG00010005242) #37
Wallaby	MODERN SPECIES	9354																KRT12 (ENSMEUG00000003605) #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000020864	ENSSHAG00000029620	ENSSHAG00000029992	ENSSHAG00000020768	ENSSHAG00000030303	ENSSHAG00000032154	ENSSHAG00000029444	ENSSHAG00000004571	ENSSHAG00000020935	ENSSHAG00000025429	ENSSHAG00000032187	KRT40 (ENSSHAG00000005127)	ENSSHAG00000005663 #16	KRT23 (ENSSHAG00000022536)	KRT20 (ENSSHAG00000007295)	KRT12 (ENSSHAG00000007542) #22	KRT10 (ENSSHAG00000008107)	ENSSHAG00000002027	ENSSHAG00000008599	KRT26 (ENSSHAG00000008696) #23	KRT25 (ENSSHAG00000008841)	ENSSHAG00000022462 #24	KRT24 (ENSSHAG00000009276) #24	ENSSHAG00000009434	KRT222 (ENSSHAG00000009670) #25	SMARCE1 (ENSSHAG00000009907) #26	CCR7 (ENSSHAG00000027409) #27	TNS4 (ENSSHAG00000011346) #28	IGFBP4 (ENSSHAG00000011882) #29	TOP2A (ENSSHAG00000012147) #30	RARA (ENSSHAG00000021631) #32
Opossum	MODERN SPECIES	1	ENSMODG00000041827	ENSMODG00000051411	ENSMODG00000041044	ENSMODG00000042847	ENSMODG00000038095	ENSMODG00000037733	ENSMODG00000024126	ENSMODG00000041424	ENSMODG00000046528	ENSMODG00000041097	KRT40 (ENSMODG00000013596)	ENSMODG00000013588 #16	KRT23 (ENSMODG00000013577)	ENSMODG00000028173	KRT20 (ENSMODG00000013562)	KRT12 (ENSMODG00000013554) #22	ENSMODG00000013548	ENSMODG00000013512	ENSMODG00000013542	ENSMODG00000013455	ENSMODG00000040965	KRT26 (ENSMODG00000013449) #23	KRT25 (ENSMODG00000013441)	ENSMODG00000025669 #24	KRT24 (ENSMODG00000013275) #24	ENSMODG00000025707	KRT222 (ENSMODG00000013194) #25	SMARCE1 (ENSMODG00000013191) #26	CCR7 (ENSMODG00000013181) #27	TNS4 (ENSMODG00000013177) #28	ENSMODG00000039152
Platypus	MODERN SPECIES	2	ENSOANG00000042332	ENSOANG00000036100	ENSOANG00000014844	ENSOANG00000047477	ENSOANG00000049090	ENSOANG00000009786	ENSOANG00000002907	ENSOANG00000037221	ENSOANG00000045911	ENSOANG00000040829	ENSOANG00000046979	KRT40 (ENSOANG00000002903)	ENSOANG00000002902 #16	KRT23 (ENSOANG00000002901)	ENSOANG00000009498	KRT12 (ENSOANG00000014773) #22	ENSOANG00000002900	KRT10 (ENSOANG00000002899)	KRT26 (ENSOANG00000002896) #23	KRT25 (ENSOANG00000002895)	ENSOANG00000047089 #24	ENSOANG00000047357 #24	ENSOANG00000002894 #24	ENSOANG00000050890 #24	ENSOANG00000042243	KRT222 (ENSOANG00000010960) #25	ENSOANG00000045120 #26	CCR7 (ENSOANG00000045508) #27	TNS4 (ENSOANG00000012954) #28	IGFBP4 (ENSOANG00000047494) #29	TOP2A (ENSOANG00000003053) #30
Sauria	ANCESTRAL SPECIES	26	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #13	ENSGT00390000015789.d ##8	ENSGT00940000163247 #9	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A	ENSGT00940000154403.b ##14	ENSGT00940000161311.d #16	ENSGT00940000161311.c #16	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849.p.a	ENSGT00940000161783.a #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000165938	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35
Archelosauria	ANCESTRAL SPECIES	21	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #13	ENSGT00390000015789.d ##8	ENSGT00940000163247 #9	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A	ENSGT00940000154403.b ##14	ENSGT00940000161311.d #16	ENSGT00940000161311.c #16	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849.p.a	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000165938	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT01080000258839
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00390000012959.a	ENSGT00940000156331	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000155258.t #13	ENSGT00940000163247 #9	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382 #22	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT01080000258839	ENSGT00940000160144 #35	ENSGT00390000006930 #36
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	401	FKBP10 (ENSPSIG00000002740)	P3H4 (ENSPSIG00000002702)	JUP (ENSPSIG00000002691)	ENSPSIG00000002686	EIF1 (ENSPSIG00000002672) #8	ENSPSIG00000002669	ENSPSIG00000002668 #9	ENSPSIG00000002643	ENSPSIG00000002638	KRT15 (ENSPSIG00000002628) ##14	KRT23 (ENSPSIG00000002604)	ENSPSIG00000002600	KRT19 (ENSPSIG00000002599) #13	ENSPSIG00000002598 #22	ENSPSIG00000002065	ENSPSIG00000002596 #22	ENSPSIG00000002595 #24	KRT222 (ENSPSIG00000002590) #25	SMARCE1 (ENSPSIG00000002527) #26	CCR7 (ENSPSIG00000002515) #27	TNS4 (ENSPSIG00000002504) #28	IGFBP4 (ENSPSIG00000002490) #29	ENSPSIG00000002457	TOP2A (ENSPSIG00000002433) #30	ENSPSIG00000002064	RARA (ENSPSIG00000002372) #32	CDC6 (ENSPSIG00000002363) #33	RAPGEFL1 (ENSPSIG00000002352) #35	CASC3 (ENSPSIG00000002339) #36	MSL1 (ENSPSIG00000002337) #37
Chinese turtle	MODERN SPECIES	401		ENSPSIG00000002752	FKBP10 (ENSPSIG00000002740)	P3H4 (ENSPSIG00000002702)	JUP (ENSPSIG00000002691)	ENSPSIG00000002686	EIF1 (ENSPSIG00000002672) #8	ENSPSIG00000002669	ENSPSIG00000002668 #9	ENSPSIG00000002643	ENSPSIG00000002638	KRT15 (ENSPSIG00000002628) ##14	KRT23 (ENSPSIG00000002604)	ENSPSIG00000002600	KRT19 (ENSPSIG00000002599) #13	ENSPSIG00000002598 #22	ENSPSIG00000002065	ENSPSIG00000002596 #22	ENSPSIG00000002595 #24	KRT222 (ENSPSIG00000002590) #25	SMARCE1 (ENSPSIG00000002527) #26	CCR7 (ENSPSIG00000002515) #27	TNS4 (ENSPSIG00000002504) #28	IGFBP4 (ENSPSIG00000002490) #29	ENSPSIG00000002457	TOP2A (ENSPSIG00000002433) #30	ENSPSIG00000002064	RARA (ENSPSIG00000002372) #32	CDC6 (ENSPSIG00000002363) #33	RAPGEFL1 (ENSPSIG00000002352) #35	CASC3 (ENSPSIG00000002339) #36
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000159382.c #22
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000159382.c #22
Goode s thornscrub tortoise	MODERN SPECIES	15	ENSGEVG00005010382	NKIRAS2 (ENSGEVG00005010454)	DNAJC7 (ENSGEVG00005010483)	CNP (ENSGEVG00005010526)	ODAD4 (ENSGEVG00005010597)	ACLY (ENSGEVG00005010903)	KLHL11 (ENSGEVG00005010959)	KLHL10 (ENSGEVG00005011024)	NT5C3B (ENSGEVG00005011091)	FKBP10 (ENSGEVG00005011165)	P3H4 (ENSGEVG00005011368)	JUP (ENSGEVG00005011560)	ENSGEVG00005011615	ENSGEVG00005011873	EIF1 (ENSGEVG00005011907) #8	ENSGEVG00005011929 #22	ENSGEVG00005012012 #9	ENSGEVG00005012106 #9	ENSGEVG00005012196	ENSGEVG00005012379	ENSGEVG00005012618	ENSGEVG00005012756 ##14	KRT15 (ENSGEVG00005012829) ##14	KRT23 (ENSGEVG00005012916)	ENSGEVG00005013074	KRT12 (ENSGEVG00005013775) #22	SMARCE1 (ENSGEVG00005014242) #26	CCR7 (ENSGEVG00005014270) #27	TNS4 (ENSGEVG00005014290) #28	IGFBP4 (ENSGEVG00005014377) #29	ENSGEVG00005014498
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00390000012959.a	ENSGT00940000156331	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000155258.t #13	ENSGT00940000163247.w #9	ENSGT00940000163247.v #9	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.d #22	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557.vb #34	ENSGT00940000155557.wb #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36
Emydidae	ANCESTRAL SPECIES	26	ENSGT00390000012959.a	ENSGT00940000156331	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000155258.t #13	ENSGT00940000163247.w #9	ENSGT00940000163247.v #9	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.d #22	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557.vb #34	ENSGT00940000155557.wb #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36
Three-toed box turtle	MODERN SPECIES	91	NT5C3B (ENSTMTG00000007037)	FKBP10 (ENSTMTG00000007058)	P3H4 (ENSTMTG00000007081)	JUP (ENSTMTG00000007105)	ENSTMTG00000007181	ENSTMTG00000007574	EIF1 (ENSTMTG00000007588) #8	ENSTMTG00000007603 #13	ENSTMTG00000007628 #9	ENSTMTG00000007662 #9	ENSTMTG00000007676	ENSTMTG00000007705 ##14	KRT15 (ENSTMTG00000007720) ##14	KRT23 (ENSTMTG00000007749)	ENSTMTG00000007803	KRT12 (ENSTMTG00000008143) #22	KRT24 (ENSTMTG00000008250) #24	KRT222 (ENSTMTG00000008270) #25	SMARCE1 (ENSTMTG00000008288) #26	CCR7 (ENSTMTG00000008302) #27	ENSTMTG00000008307	TNS4 (ENSTMTG00000008315) #28	IGFBP4 (ENSTMTG00000008352) #29	ENSTMTG00000008359	ENSTMTG00000008387 #30	ENSTMTG00000008433 #30	RARA (ENSTMTG00000008461) #32	CDC6 (ENSTMTG00000008490) #33	ENSTMTG00000008533 #34	ENSTMTG00000008537 #34	RAPGEFL1 (ENSTMTG00000008557) #35
painted turtle	MODERN SPECIES	2394	NT5C3B (ENSCPBG00000006621)	FKBP10 (ENSCPBG00000006612)	P3H4 (ENSCPBG00000006605)	ENSCPBG00000006602	JUP (ENSCPBG00000006592)	ENSCPBG00000006587	ENSCPBG00000006570	ENSCPBG00000006566 #9	ENSCPBG00000006557 #9	ENSCPBG00000006527	ENSCPBG00000006507	ENSCPBG00000006500 ##14	KRT15 (ENSCPBG00000006494) ##14	KRT23 (ENSCPBG00000006488)	ENSCPBG00000005869	KRT12 (ENSCPBG00000005794) #22	KRT24 (ENSCPBG00000005755) #24	KRT222 (ENSCPBG00000005743) #25	SMARCE1 (ENSCPBG00000005734) #26	CCR7 (ENSCPBG00000005728) #27	TNS4 (ENSCPBG00000005006) #28	IGFBP4 (ENSCPBG00000004980) #29	TOP2A (ENSCPBG00000004966) #30	GJD3 (ENSCPBG00000004957) #31	ENSCPBG00000004951	CDC6 (ENSCPBG00000004797) #33	ENSCPBG00000004786 #34	ENSCPBG00000004781 #34	RAPGEFL1 (ENSCPBG00000004773) #35	CASC3 (ENSCPBG00000004750) #36	MSL1 (ENSCPBG00000004589) #37
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00940000154664	ENSGT00390000012959.a	ENSGT00940000156331	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.w #9	ENSGT00940000163247.v #9	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.d #22	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557.vb #34	ENSGT00940000155557.wb #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36
Abingdon island giant tortoise	MODERN SPECIES	1384	P3H4 (ENSCABG00000011671)	JUP (ENSCABG00000011670)	ENSCABG00000011669	ENSCABG00000011667	ENSCABG00000011664	ENSCABG00000011663	ENSCABG00000011659 #9	ENSCABG00000011657 #9	ENSCABG00000011651	ENSCABG00000011642	ENSCABG00000011634	ENSCABG00000011629 ##14	ENSCABG00000011624 ##14	KRT23 (ENSCABG00000011620)	ENSCABG00000011586	KRT12 (ENSCABG00000011355) #22	KRT24 (ENSCABG00000011350) #24	KRT222 (ENSCABG00000011348) #25	SMARCE1 (ENSCABG00000011346) #26	CCR7 (ENSCABG00000011344) #27	ENSCABG00000011342	TNS4 (ENSCABG00000011249) #28	IGFBP4 (ENSCABG00000011238) #29	ENSCABG00000011235	TOP2A (ENSCABG00000011214) #30	GJD3 (ENSCABG00000011213) #31	RARA (ENSCABG00000011212) #32	CDC6 (ENSCABG00000011211) #33	ENSCABG00000011209 #34	ENSCABG00000011207 #34	RAPGEFL1 (ENSCABG00000011192) #35
Goode s thornscrub tortoise	MODERN SPECIES	15	P3H4 (ENSGEVG00005011368)	JUP (ENSGEVG00005011560)	ENSGEVG00005011615	ENSGEVG00005011873	EIF1 (ENSGEVG00005011907) #8	ENSGEVG00005011929 #22	ENSGEVG00005012012 #9	ENSGEVG00005012106 #9	ENSGEVG00005012196	ENSGEVG00005012379	ENSGEVG00005012618	ENSGEVG00005012756 ##14	KRT15 (ENSGEVG00005012829) ##14	KRT23 (ENSGEVG00005012916)	ENSGEVG00005013074	KRT12 (ENSGEVG00005013775) #22	SMARCE1 (ENSGEVG00005014242) #26	CCR7 (ENSGEVG00005014270) #27	TNS4 (ENSGEVG00005014290) #28	IGFBP4 (ENSGEVG00005014377) #29	ENSGEVG00005014498	TOP2A (ENSGEVG00005015250) #30	GJD3 (ENSGEVG00005018837) #31	RARA (ENSGEVG00005018860) #32	CDC6 (ENSGEVG00005018895) #33	WIPF2 (ENSGEVG00005018923) #34	ENSGEVG00005018935	RAPGEFL1 (ENSGEVG00005018949) #35	CASC3 (ENSGEVG00005018998) #36	MSL1 (ENSGEVG00005004312) #37	NR1D1 (ENSGEVG00005004327)
Archosauria	ANCESTRAL SPECIES	20	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000161311.d #16	ENSGT00940000161311.c #16	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849.p.a	ENSGT00940000161783.b #24	ENSGT00960000190892	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000165938	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
Australian saltwater crocodile	MODERN SPECIES	61	ENSCPRG00005003480 #9	ENSCPRG00005003472 #9	ENSCPRG00005003467 ##14	ENSCPRG00005003464 ##14	ENSCPRG00005003463	ENSCPRG00005003461	ENSCPRG00005003457	ENSCPRG00005003452	ENSCPRG00005003447 ##14	ENSCPRG00005003446 ##14	ENSCPRG00005003413 #16	ENSCPRG00005003305 #16	ENSCPRG00005003229 #16	KRT23 (ENSCPRG00005003211)	KRT20 (ENSCPRG00005003180)	KRT12 (ENSCPRG00005003161) #22	KRT10 (ENSCPRG00005003159)	KRT24 (ENSCPRG00005003146) #24	ENSCPRG00005003141	SMARCE1 (ENSCPRG00005003138) #26	CCR7 (ENSCPRG00005003131) #27	ENSCPRG00005003130	TNS4 (ENSCPRG00005003064) #28	IGFBP4 (ENSCPRG00005003051) #29	ENSCPRG00005003038	ENSCPRG00005003033	TOP2A (ENSCPRG00005002995) #30	GJD3 (ENSCPRG00005002985) #31	RARA (ENSCPRG00005002978) #32	CDC6 (ENSCPRG00005002969) #33	WIPF2 (ENSCPRG00005002953) #34
Aves	ANCESTRAL SPECIES	26	ENSGT00940000154664	ENSGT00390000012959.a	ENSGT00940000156331	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT01080000258839	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37
Neognathae	ANCESTRAL SPECIES	23	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.u #9	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT01080000258839	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.u #9	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37	ENSGT00940000160548
Passeriformes	ANCESTRAL SPECIES	29	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.u #9	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37	ENSGT00940000160548
Great tit	MODERN SPECIES	20	FKBP10 (ENSPMJG00000001007)	P3H4 (ENSPMJG00000001004)	JUP (ENSPMJG00000000991)	ENSPMJG00000000941	EIF1 (ENSPMJG00000000936) ##8	ENSPMJG00000000917 #9	KRT13 (ENSPMJG00000000913) #15	ENSPMJG00000000768	ENSPMJG00000000388	ENSPMJG00000000358	ENSPMJG00000000335	KRT19 (ENSPMJG00000000323) #13	KRT15 (ENSPMJG00000000316) ##14	KRT23 (ENSPMJG00000000306)	KRT20 (ENSPMJG00000000284)	KRT12 (ENSPMJG00000000279) #22	KRT222 (ENSPMJG00000000276) #25	SMARCE1 (ENSPMJG00000000262) #26	CCR7 (ENSPMJG00000000255) #27	TNS4 (ENSPMJG00000000210) #28	IGFBP4 (ENSPMJG00000000187) #29	ENSPMJG00000000173	TOP2A (ENSPMJG00000000127) #30	GJD3 (ENSPMJG00000000120) #31	RARA (ENSPMJG00000000114) #32	CDC6 (ENSPMJG00000000063) #33	ENSPMJG00000017939 #34	RAPGEFL1 (ENSPMJG00000017938) #35	CASC3 (ENSPMJG00000017937) #36	MSL1 (ENSPMJG00000017930) #37	ENSPMJG00000017927
Passeriformes_d	ANCESTRAL SPECIES	25	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.u #9	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.f	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37	ENSGT00940000160548
Passeriformes_g	ANCESTRAL SPECIES	26	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.u #9	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.f	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37	ENSGT00940000160548
Passeroidea	ANCESTRAL SPECIES	32	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.u #9	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.f	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37	ENSGT00940000160548
Zebra finch	MODERN SPECIES	20	FKBP10 (ENSTGUG00000002431)	P3H4 (ENSTGUG00000002427)	JUP (ENSTGUG00000002410)	ENSTGUG00000027542	ENSTGUG00000027189	EIF1 (ENSTGUG00000026666) #8	ENSTGUG00000024454	KRT13 (ENSTGUG00000016947) #15	ENSTGUG00000002392	ENSTGUG00000002388	ENSTGUG00000019538	ENSTGUG00000016530	KRT19 (ENSTGUG00000002393) #13	KRT23 (ENSTGUG00000018328)	KRT20 (ENSTGUG00000026084)	KRT12 (ENSTGUG00000002372) #22	KRT222 (ENSTGUG00000002371) #25	SMARCE1 (ENSTGUG00000002357) #26	CCR7 (ENSTGUG00000002356) #27	TNS4 (ENSTGUG00000021496) #28	IGFBP4 (ENSTGUG00000002346) #29	TOP2A (ENSTGUG00000002312) #30	ENSTGUG00000021616	GJD3 (ENSTGUG00000002311) #31	RARA (ENSTGUG00000022927) #32	CDC6 (ENSTGUG00000002293) #33	ENSTGUG00000020027 #34	ENSTGUG00000002288 #34	RAPGEFL1 (ENSTGUG00000019813) #35	CASC3 (ENSTGUG00000002300) #36	MSL1 (ENSTGUG00000002297) #37
Common canary	MODERN SPECIES	42	ENSSCAG00000007584	ENSSCAG00000007653	EIF1 (ENSSCAG00000007656) #8	ENSSCAG00000007660 #9	ENSSCAG00000007664	ENSSCAG00000007670	ENSSCAG00000007673	ENSSCAG00000007681	ENSSCAG00000007686	ENSSCAG00000007692	ENSSCAG00000007701	KRT19 (ENSSCAG00000007706) #13	KRT15 (ENSSCAG00000007710) ##14	KRT23 (ENSSCAG00000007713)	KRT20 (ENSSCAG00000007719)	KRT12 (ENSSCAG00000007734) #22	KRT222 (ENSSCAG00000007752) #25	SMARCE1 (ENSSCAG00000007757) #26	CCR7 (ENSSCAG00000007768) #27	TNS4 (ENSSCAG00000007773) #28	IGFBP4 (ENSSCAG00000007784) #29	ENSSCAG00000007790	TOP2A (ENSSCAG00000007794) #30	RARA (ENSSCAG00000007824) #32	GJD3 (ENSSCAG00000007939) #31	CDC6 (ENSSCAG00000007941) #33	WIPF2 (ENSSCAG00000007946) #34	CASC3 (ENSSCAG00000007958) #36	MSL1 (ENSSCAG00000008010) #37	ENSSCAG00000008026	THRA (ENSSCAG00000008027)
Medium ground finch	MODERN SPECIES	356			ENSGFOG00000006880 #9	ENSGFOG00000006883	ENSGFOG00000006890	ENSGFOG00000006896	ENSGFOG00000006908	ENSGFOG00000006918	ENSGFOG00000006927	ENSGFOG00000006944	ENSGFOG00000006956	KRT19 (ENSGFOG00000007054) #13	KRT15 (ENSGFOG00000007061) ##14	KRT23 (ENSGFOG00000007070)	KRT20 (ENSGFOG00000007085)	KRT12 (ENSGFOG00000007092) #22	ENSGFOG00000007105	KRT222 (ENSGFOG00000007111) #25	SMARCE1 (ENSGFOG00000007119) #26	CCR7 (ENSGFOG00000007134) #27	TNS4 (ENSGFOG00000007151) #28	IGFBP4 (ENSGFOG00000007229) #29	TOP2A (ENSGFOG00000007236) #30	RARA (ENSGFOG00000007269) #32
Flycatcher	MODERN SPECIES	19	JUP (ENSFALG00000000297)	ENSFALG00000000310	ENSFALG00000000312	EIF1 (ENSFALG00000000314) #8	ENSFALG00000026044	ENSFALG00000000318 #9	ENSFALG00000023326	ENSFALG00000027809 #15	ENSFALG00000000327	ENSFALG00000000331	ENSFALG00000000335	KRT19 (ENSFALG00000000341) #13	KRT15 (ENSFALG00000000346) ##14	KRT23 (ENSFALG00000000349)	KRT20 (ENSFALG00000000350)	KRT12 (ENSFALG00000000351) #22	KRT222 (ENSFALG00000000359) #25	SMARCE1 (ENSFALG00000000362) #26	CCR7 (ENSFALG00000000373) #27	TNS4 (ENSFALG00000000379) #28	IGFBP4 (ENSFALG00000023499) #29	ENSFALG00000026880	TOP2A (ENSFALG00000000389) #30	RARA (ENSFALG00000000392) #32	CDC6 (ENSFALG00000000393) #33	ENSFALG00000023333 #34	RAPGEFL1 (ENSFALG00000000406) #35	CASC3 (ENSFALG00000000412) #36	MSL1 (ENSFALG00000000420) #37	NR1D1 (ENSFALG00000000424)	THRA (ENSFALG00000000433)
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.u #9	ENSGT00940000163247.t #9	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37	ENSGT00940000160548	ENSGT00940000157917
Kakapo	MODERN SPECIES	12	ENSSHBG00005017676	EIF1 (ENSSHBG00005017683) #8	ENSSHBG00005017694 ##14	ENSSHBG00005017704 #9	ENSSHBG00005017711 #9	ENSSHBG00005017719 #15	ENSSHBG00005017728	ENSSHBG00005017736	ENSSHBG00005017741	ENSSHBG00005017742	ENSSHBG00005017746	ENSSHBG00005017756	KRT15 (ENSSHBG00005017768) ##14	KRT23 (ENSSHBG00005017777)	KRT20 (ENSSHBG00005017782)	KRT12 (ENSSHBG00005017796) #22	KRT222 (ENSSHBG00005017817) #25	SMARCE1 (ENSSHBG00005017823) #26	CCR7 (ENSSHBG00005017832) #27	ENSSHBG00005017836	TNS4 (ENSSHBG00005017847) #28	IGFBP4 (ENSSHBG00005017853) #29	TOP2A (ENSSHBG00005018009) #30	RARA (ENSSHBG00005020013) #32	CDC6 (ENSSHBG00005000732) #33	WIPF2 (ENSSHBG00005000739) #34	CASC3 (ENSSHBG00005000761) #36	MSL1 (ENSSHBG00005000763) #37	NR1D1 (ENSSHBG00005005656)	THRA (ENSSHBG00005005701)	MED24 (ENSSHBG00005005842)
Golden eagle	MODERN SPECIES	24	ENSACCG00020002498	EIF1 (ENSACCG00020002514) #8	ENSACCG00020002559 #9	ENSACCG00020002592 #9	ENSACCG00020002614	ENSACCG00020002631	ENSACCG00020002646 #16	ENSACCG00020002661	ENSACCG00020002680	ENSACCG00020002765	ENSACCG00020002840	KRT19 (ENSACCG00020002860) #13	KRT15 (ENSACCG00020002881) ##14	KRT23 (ENSACCG00020002903)	KRT20 (ENSACCG00020002922)	KRT12 (ENSACCG00020002943) #22	KRT222 (ENSACCG00020002958) #25	SMARCE1 (ENSACCG00020003022) #26	CCR7 (ENSACCG00020003054) #27	TNS4 (ENSACCG00020003073) #28	IGFBP4 (ENSACCG00020003106) #29	ENSACCG00020003118	TOP2A (ENSACCG00020003154) #30	RARA (ENSACCG00020003210) #32	CDC6 (ENSACCG00020003236) #33	ENSACCG00020003260 #34	ENSACCG00020003276 #34	RAPGEFL1 (ENSACCG00020003342) #35	CASC3 (ENSACCG00020003399) #36	MSL1 (ENSACCG00020003417) #37	NR1D1 (ENSACCG00020003431)
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.u #9	ENSGT00940000165820.B	ENSGT00950000183311 #15	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.c	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT01080000258839	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37
Anatidae	ANCESTRAL SPECIES	43	ENSGT00940000154664	ENSGT00390000012959.a	ENSGT00940000156331	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00940000163247.t #9	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32
Pink-footed goose	MODERN SPECIES	435											ENSABRG00000016243	ENSABRG00000016231 ##14	KRT15 (ENSABRG00000016225) ##14	KRT23 (ENSABRG00000016223)	KRT20 (ENSABRG00000016220)	KRT12 (ENSABRG00000016217) #22	KRT222 (ENSABRG00000016210) #25	SMARCE1 (ENSABRG00000016203) #26	CCR7 (ENSABRG00000016200) #27	TNS4 (ENSABRG00000016196) #28	IGFBP4 (ENSABRG00000016191) #29	ENSABRG00000016182	TOP2A (ENSABRG00000016177) #30	GJD3 (ENSABRG00000016175) #31	RARA (ENSABRG00000016172) #32
Duck	MODERN SPECIES	19	NKIRAS2 (ENSAPLG00000002856)	DNAJC7 (ENSAPLG00000002392)	CNP (ENSAPLG00000002170)	ENSAPLG00000016067	KLHL11 (ENSAPLG00000030316)	KLHL10 (ENSAPLG00000015963)	ENSAPLG00000008725 #9	ENSAPLG00000022579	ENSAPLG00000028586	ENSAPLG00000010116	ENSAPLG00000029963	ENSAPLG00000008997 ##14	KRT15 (ENSAPLG00000008949) ##14	KRT23 (ENSAPLG00000008879)	KRT20 (ENSAPLG00000008808)	KRT12 (ENSAPLG00000008362) #22	ENSAPLG00000025779	KRT222 (ENSAPLG00000008286) #25	SMARCE1 (ENSAPLG00000008102) #26	CCR7 (ENSAPLG00000008028) #27	TOP2A (ENSAPLG00000006390) #30	ENSAPLG00000000844	ENSAPLG00000000849	ENSAPLG00000000855	ENSAPLG00000000876	ENSAPLG00000023316	CRHR1 (ENSAPLG00000013119)	ENSAPLG00000022503	ENSAPLG00000000706	ITGB3 (ENSAPLG00000004489)	EFCAB3 (ENSAPLG00000022795)
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.u #9	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.c	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT01080000258839	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37	ENSGT00940000160548
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000156395	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.u #9	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.d	ENSGT00950000182969.B.c.a.a.c.f.a.c	ENSGT00940000155258.t #13	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT01080000258839	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37	ENSGT00940000160548
Chicken	MODERN SPECIES	19	ENSGALG00010021221	ENSGALG00010021209	EIF1 (ENSGALG00010022682) #8	KRT17 (ENSGALG00010022946) #9	KRT14 (ENSGALG00010026690) #9	ENSGALG00010023183	ENSGALG00010026731	ENSGALG00010023089	ENSGALG00010026755	ENSGALG00010026719	ENSGALG00010022953	KRT24 (ENSGALG00010026706) #13	KRT13 (ENSGALG00010022872) ##14	KRT23 (ENSGALG00010022817)	KRT40 (ENSGALG00010022786)	KRT12 (ENSGALG00010022765) #22	KRT222 (ENSGALG00010022725) #25	SMARCE1 (ENSGALG00010022547) #26	CCR7 (ENSGALG00010022529) #27	TNS4 (ENSGALG00010022522) #28	IGFBP4 (ENSGALG00010022511) #29	ENSGALG00010022502	TOP2A (ENSGALG00010022483) #30	RARA (ENSGALG00010024581) #32	CDC6 (ENSGALG00010024548) #33	WIPF2 (ENSGALG00010024541) #34	RAPGEFL1 (ENSGALG00010024539) #35	CASC3 (ENSGALG00010024504) #36	MSL1 (ENSGALG00010024679) #37	NR1D1 (ENSGALG00010024675)	MED24 (ENSGALG00010024666)
Turkey	MODERN SPECIES	21						ENSMGAG00000019618 #32	ENSMGAG00000009314 #30	ENSMGAG00000002851 #29	TNS4 (ENSMGAG00000021108) #28	ENSMGAG00000002887 #26	ENSMGAG00000002880 #27	ENSMGAG00000022408	KRT19 (ENSMGAG00000003084) #13	KRT23 (ENSMGAG00000003057)	KRT20 (ENSMGAG00000016371)	KRT12 (ENSMGAG00000017405) #22	KRT222 (ENSMGAG00000002908) #25	ENSMGAG00000002913	ENSMGAG00000020999	ENSMGAG00000016744	ENSMGAG00000003113 ##14	ENSMGAG00000016911 #10	ENSMGAG00000017065 #10	ENSMGAG00000016949	ENSMGAG00000016477 #8	ENSMGAG00000016610	ENSMGAG00000016750	ENSMGAG00000010064	ENSMGAG00000022609	ENSMGAG00000006992	NT5C3B (ENSMGAG00000007006)
Japanese quail	MODERN SPECIES	19	FKBP10 (ENSCJPG00005004766)	P3H4 (ENSCJPG00005004763)	JUP (ENSCJPG00005004757)	ENSCJPG00005004756	ENSCJPG00005004601	EIF1 (ENSCJPG00005004600) #8	ENSCJPG00005004598 #9	KRT13 (ENSCJPG00005004597) #15	ENSCJPG00005004596	ENSCJPG00005004595	ENSCJPG00005004594	KRT19 (ENSCJPG00005004587) #13	KRT15 (ENSCJPG00005004586) ##14	KRT23 (ENSCJPG00005004577)	KRT20 (ENSCJPG00005004576)	KRT12 (ENSCJPG00005004575) #22	KRT222 (ENSCJPG00005004574) #25	SMARCE1 (ENSCJPG00005004573) #26	CCR7 (ENSCJPG00005004572) #27	TNS4 (ENSCJPG00005004571) #28	IGFBP4 (ENSCJPG00005004570) #29	ENSCJPG00005004568	TOP2A (ENSCJPG00005002732) #30	RARA (ENSCJPG00005002716) #32	CDC6 (ENSCJPG00005002714) #33	WIPF2 (ENSCJPG00005002712) #34	RAPGEFL1 (ENSCJPG00005002710) #35	CASC3 (ENSCJPG00005002704) #36	NR1D1 (ENSCJPG00005002456)	THRA (ENSCJPG00005002447)	MED24 (ENSCJPG00005002441)
African ostrich	MODERN SPECIES	1063	CNP (ENSSCUG00000013817)	ODAD4 (ENSSCUG00000013820)	ACLY (ENSSCUG00000013827)	KLHL11 (ENSSCUG00000013838)	KLHL10 (ENSSCUG00000013839)	NT5C3B (ENSSCUG00000013841)	JUP (ENSSCUG00000013848)	KRT15 (ENSSCUG00000013863) ##14	ENSSCUG00000013869	ENSSCUG00000013874	ENSSCUG00000013880	ENSSCUG00000013882	ENSSCUG00000013888	KRT23 (ENSSCUG00000013894)	KRT20 (ENSSCUG00000013897)	KRT12 (ENSSCUG00000013904) #22	KRT222 (ENSSCUG00000013911) #25	SMARCE1 (ENSSCUG00000013919) #26	CCR7 (ENSSCUG00000013931) #27	TNS4 (ENSSCUG00000013935) #28
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000155258.t #13	ENSGT00940000163247 #9	ENSGT00950000182969.B.c.a.a.c.f.b.j	ENSGT00950000183311 #15	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i	ENSGT00940000165820.A	ENSGT00940000154403.b ##14	ENSGT00940000161311.d #16	ENSGT00940000161311.c #16	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382 #22	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a #24	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
tuatara	MODERN SPECIES	1950	FKBP10 (ENSSPUG00000013421)	P3H4 (ENSSPUG00000013436)	JUP (ENSSPUG00000013455)	ENSSPUG00000013483	EIF1 (ENSSPUG00000013490) #8	ENSSPUG00000013500 #13	ENSSPUG00000013511 #9	ENSSPUG00000013534 #11	ENSSPUG00000013544	ENSSPUG00000013576 ##14	KRT15 (ENSSPUG00000013597) ##14	ENSSPUG00000013612 #16	ENSSPUG00000013664 #16	KRT23 (ENSSPUG00000013704)	KRT20 (ENSSPUG00000013731)	KRT12 (ENSSPUG00000013794) #22	KRT10 (ENSSPUG00000013830)	ENSSPUG00000013886 #24	ENSSPUG00000013896 #24	KRT222 (ENSSPUG00000013908) #25	SMARCE1 (ENSSPUG00000013927) #26
Episquamata	ANCESTRAL SPECIES	5	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000155258.t #13	ENSGT00940000163247 #9	ENSGT00950000182969.B.c.a.a.c.f.b.j	ENSGT00950000183311 #15	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b ##14	ENSGT00940000161311.d #16	ENSGT00940000161311.c #16	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382 #22	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a #24	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000162183	ENSGT00940000156395	ENSGT00940000153814.b	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247 #9	ENSGT00950000182969.B.c.a.a.c.f.b.j	ENSGT00950000183311 #15	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382 #22	ENSGT00940000161783.a #24	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000156395	ENSGT00940000153814.b	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.q #9	ENSGT00950000182969.B.c.a.a.c.g	ENSGT00940000163247.p #9	ENSGT00940000154403.a.b ##14	ENSGT00950000182969.B.c.a.a.c.f.b.j	ENSGT00950000183311 #15	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.f #22	ENSGT00940000160849.p.b	ENSGT00940000159382.e #22	ENSGT00940000161783.a #24	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539.e #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35	ENSGT00390000006930 #36
Indian cobra	MODERN SPECIES	337	CRHR1 (ENSNNAG00000005231)	ENSNNAG00000004950	JUP (ENSNNAG00000004885)	P3H4 (ENSNNAG00000004861)	ENSNNAG00000004857	EIF1 (ENSNNAG00000004838) #8	ENSNNAG00000004052	ENSNNAG00000003954 #9	ENSNNAG00000003935	KRT13 (ENSNNAG00000003849) #15	ENSNNAG00000003812 ##14	KRT15 (ENSNNAG00000003755) ##14	KRT23 (ENSNNAG00000003719)	ENSNNAG00000003608	KRT10 (ENSNNAG00000003431)	KRT12 (ENSNNAG00000003388) #22	ENSNNAG00000003221 #24	ENSNNAG00000015547 #24	KRT222 (ENSNNAG00000015493) #25	SMARCE1 (ENSNNAG00000015477) #26	CCR7 (ENSNNAG00000015470) #27	TNS4 (ENSNNAG00000015322) #28	IGFBP4 (ENSNNAG00000015293) #29	ENSNNAG00000015270	ENSNNAG00000015220 #30	ENSNNAG00000015184 #30	GJD3 (ENSNNAG00000015167) #31	RARA (ENSNNAG00000015151) #32	CDC6 (ENSNNAG00000015116) #33	ENSNNAG00000015111 #34	RAPGEFL1 (ENSNNAG00000015063) #35
Elapidae_a	ANCESTRAL SPECIES	142											ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.f #22	ENSGT00940000160849.p.b	ENSGT00940000159382.e #22	ENSGT00940000161783.a #24	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A
Acanthophiinae	ANCESTRAL SPECIES	133											ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.f #22	ENSGT00940000160849.p.b	ENSGT00940000159382.e #22	ENSGT00940000161783.a #24	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A
Eastern brown snake	MODERN SPECIES	197											ENSPTXG00000015877 ##14	KRT15 (ENSPTXG00000015872) ##14	KRT23 (ENSPTXG00000015869)	ENSPTXG00000015868	KRT10 (ENSPTXG00000015858)	KRT12 (ENSPTXG00000015850) #22	ENSPTXG00000015786 #24	ENSPTXG00000015780 #24	KRT222 (ENSPTXG00000015777) #25	SMARCE1 (ENSPTXG00000015776) #26	CCR7 (ENSPTXG00000015775) #27	TNS4 (ENSPTXG00000015773) #28	IGFBP4 (ENSPTXG00000015772) #29
Mainland tiger snake	MODERN SPECIES	274											ENSNSUG00000008380 ##14	ENSNSUG00000008381 ##14	KRT23 (ENSNSUG00000008382)	ENSNSUG00000008383	ENSNSUG00000008385 #22	ENSNSUG00000008397 #22	ENSNSUG00000008398 #24	ENSNSUG00000008399 #24	KRT222 (ENSNSUG00000008400) #25	SMARCE1 (ENSNSUG00000008401) #26	CCR7 (ENSNSUG00000008402) #27	ENSNSUG00000008403	TNS4 (ENSNSUG00000008404) #28	ENSNSUG00000008406	IGFBP4 (ENSNSUG00000008408) #29	ENSNSUG00000008409
Blue-lipped sea krait	MODERN SPECIES	4298															ENSLLTG00000009807 #13	KRT12 (ENSLLTG00000006738) #22	ENSLLTG00000006763 #24
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000162770.p.a.a	ENSGT00940000162183	ENSGT00940000156395	ENSGT00940000153814.b	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000163247.q #9	ENSGT00950000182969.B.c.a.a.c.g	ENSGT00940000163247.p #9	ENSGT00940000154403.a.b ##14	ENSGT00950000182969.B.c.a.a.c.f.b.j	ENSGT00950000183311 #15	ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.f #22	ENSGT00940000160849.p.b	ENSGT00940000159382.e #22	ENSGT00940000161783.a #24	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A	ENSGT00940000157539.e #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34
Elapidae_a	ANCESTRAL SPECIES	142													ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.f #22	ENSGT00940000160849.p.b	ENSGT00940000159382.e #22	ENSGT00940000161783.a #24	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A
Acanthophiinae	ANCESTRAL SPECIES	133													ENSGT00940000154403.b ##14	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.f #22	ENSGT00940000160849.p.b	ENSGT00940000159382.e #22	ENSGT00940000161783.a #24	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000158212.A
Mainland tiger snake	MODERN SPECIES	274												ENSNSUG00000008380 ##14	ENSNSUG00000008381 ##14	KRT23 (ENSNSUG00000008382)	ENSNSUG00000008383	ENSNSUG00000008385 #22	ENSNSUG00000008397 #22	ENSNSUG00000008398 #24	ENSNSUG00000008399 #24	KRT222 (ENSNSUG00000008400) #25	SMARCE1 (ENSNSUG00000008401) #26	CCR7 (ENSNSUG00000008402) #27	ENSNSUG00000008403	TNS4 (ENSNSUG00000008404) #28	ENSNSUG00000008406	IGFBP4 (ENSNSUG00000008408) #29	ENSNSUG00000008409
Lizard	DUPLICATION
Lizard	MODERN SPECIES	5	EIF1 (ENSACAG00000036849) #8	KRT19 (ENSACAG00000028562) #13	ENSACAG00000037211	ENSACAG00000026769	ENSACAG00000035898	ENSACAG00000035166	ENSACAG00000017876	ENSACAG00000017874	ENSACAG00000027366	ENSACAG00000029628	ENSACAG00000017868 ##14	KRT36 (ENSACAG00000015803) #16	KRT15 (ENSACAG00000028720) ##14	KRT23 (ENSACAG00000029308)	ENSACAG00000036063	KRT12 (ENSACAG00000017866) #22	ENSACAG00000043829 #22	krt36 (ENSACAG00000017860) #24	ENSACAG00000028648 #24	ENSACAG00000043058	ENSACAG00000038974	SMARCE1 (ENSACAG00000016067) #26	CCR7 (ENSACAG00000042682) #27	TNS4 (ENSACAG00000016132) #28	IGFBP4 (ENSACAG00000035156) #29	TOP2A (ENSACAG00000001904) #30	GJD3 (ENSACAG00000002406) #31	ENSACAG00000040322	ENSACAG00000040379	RARA (ENSACAG00000002413) #32	ENSACAG00000040422
Lizard	MODERN SPECIES	5	KRT19 (ENSACAG00000028562) #13	ENSACAG00000037211	ENSACAG00000026769	ENSACAG00000035898	ENSACAG00000035166	ENSACAG00000017876	ENSACAG00000017874	ENSACAG00000027366	ENSACAG00000029628	ENSACAG00000017868 ##14	KRT36 (ENSACAG00000015803) #16	KRT15 (ENSACAG00000028720) ##14	KRT23 (ENSACAG00000029308)	ENSACAG00000036063	KRT12 (ENSACAG00000017866) #22	ENSACAG00000043829 #22	krt36 (ENSACAG00000017860) #24	ENSACAG00000028648 #24	ENSACAG00000043058	ENSACAG00000038974	SMARCE1 (ENSACAG00000016067) #26	CCR7 (ENSACAG00000042682) #27	TNS4 (ENSACAG00000016132) #28	IGFBP4 (ENSACAG00000035156) #29	TOP2A (ENSACAG00000001904) #30	GJD3 (ENSACAG00000002406) #31	ENSACAG00000040322	ENSACAG00000040379	RARA (ENSACAG00000002413) #32	ENSACAG00000040422	CDC6 (ENSACAG00000002503) #33
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000153814.b	ENSGT01030000235196	ENSGT00390000015789.c #8	ENSGT00940000155258.t #13	ENSGT00940000163247 #9	ENSGT00950000182969.B.c.a.a.c.f.b.j	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b ##14	ENSGT00940000161311.d #16	ENSGT00940000161311.c #16	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382 #22	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a #24	ENSGT00940000161783.b #24	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000155557 #34	ENSGT00940000160144 #35
Argentine black and white tegu	MODERN SPECIES	32	ENSSMRG00000002816	EIF1 (ENSSMRG00000002817) #8	ENSSMRG00000002819	ENSSMRG00000002850	ENSSMRG00000002871 ##14	KRT17 (ENSSMRG00000003112) #10	ENSSMRG00000003114	ENSSMRG00000003116	ENSSMRG00000003125	ENSSMRG00000003133	ENSSMRG00000003224 ##14	KRT15 (ENSSMRG00000003225) ##14	ENSSMRG00000003231 #16	ENSSMRG00000004380 #16	KRT23 (ENSSMRG00000004509)	KRT12 (ENSSMRG00000004542) #22	ENSSMRG00000004555	ENSSMRG00000004566	ENSSMRG00000004576 #24	ENSSMRG00000004729 #24	KRT222 (ENSSMRG00000005317) #25	SMARCE1 (ENSSMRG00000005320) #26	CCR7 (ENSSMRG00000005327) #27	TNS4 (ENSSMRG00000005331) #28	IGFBP4 (ENSSMRG00000005431) #29	ENSSMRG00000005432	ENSSMRG00000005445 #30	GJD3 (ENSSMRG00000005462) #31	RARA (ENSSMRG00000005486) #32	CDC6 (ENSSMRG00000005498) #33	WIPF2 (ENSSMRG00000005505) #34
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000016378	ENSPMRG00000016387 #13	EIF1 (ENSPMRG00000016400) #8	ENSPMRG00000016412 #9	ENSPMRG00000016440	ENSPMRG00000016447	ENSPMRG00000016458	ENSPMRG00000016468	ENSPMRG00000016471	ENSPMRG00000016479	KRT15 (ENSPMRG00000016495) ##14	ENSPMRG00000016555 #16	ENSPMRG00000016684 #16	KRT23 (ENSPMRG00000016687)	ENSPMRG00000016695	KRT12 (ENSPMRG00000016698) #22	ENSPMRG00000016700	ENSPMRG00000016710	ENSPMRG00000016716 #24	ENSPMRG00000016724 #24	KRT222 (ENSPMRG00000016731) #25	SMARCE1 (ENSPMRG00000016736) #26	CCR7 (ENSPMRG00000016748) #27	TNS4 (ENSPMRG00000016753) #28	IGFBP4 (ENSPMRG00000016758) #29	ENSPMRG00000016767	TOP2A (ENSPMRG00000016771) #30	GJD3 (ENSPMRG00000016782) #31	RARA (ENSPMRG00000016786) #32	CDC6 (ENSPMRG00000016792) #33	WIPF2 (ENSPMRG00000016795) #34
Anura	DUPLICATION
Anura	DUPLICATION
Anura	DUPLICATION
Anura	ANCESTRAL SPECIES	15	ENSGT00390000014792.a #7	ENSGT00390000015789.c #8	ENSGT00940000155258 #13	ENSGT00950000182969.B.c.a.a.c	ENSGT00950000183311.a #15	ENSGT00940000154403 #14	ENSGT00950000183311.b.a #15	ENSGT00950000183311.b.b #15	ENSGT00940000161311 #16	ENSGT00940000161077	ENSGT00950000182969.B.d	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.m.b.b #22	ENSGT00940000159382.m.b.a #22	ENSGT00940000159382.m.a.b #22	ENSGT00940000159382.m.a.a #22	ENSGT00940000159382.n #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000165938.d	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000027000 #16	ENSLLEG00000027759 #16	ENSLLEG00000027858	ENSLLEG00000027886	KRT23 (ENSLLEG00000027913)	ENSLLEG00000027954	ENSLLEG00000028003	ENSLLEG00000028013	ENSLLEG00000028070 #22	ENSLLEG00000028103 #22	ENSLLEG00000028166 #22	ENSLLEG00000028459 #22	ENSLLEG00000028494 #22	ENSLLEG00000028611 #22	ENSLLEG00000028654 #22	ENSLLEG00000028707 #22	ENSLLEG00000028813	ENSLLEG00000028826 #22	ENSLLEG00000028876 #25	ENSLLEG00000029215	SMARCE1 (ENSLLEG00000029236) #26	ENSLLEG00000029469	CCR7 (ENSLLEG00000029475) #27	ENSLLEG00000029481	TNS4 (ENSLLEG00000029493) #28	IGFBP4 (ENSLLEG00000029557) #29	ENSLLEG00000029595	ENSLLEG00000029602	ENSLLEG00000029623	ENSLLEG00000029646	ENSLLEG00000021318
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000026919 #16	ENSLLEG00000027000 #16	ENSLLEG00000027759 #16	ENSLLEG00000027858	ENSLLEG00000027886	KRT23 (ENSLLEG00000027913)	ENSLLEG00000027954	ENSLLEG00000028003	ENSLLEG00000028013	ENSLLEG00000028070 #22	ENSLLEG00000028103 #22	ENSLLEG00000028166 #22	ENSLLEG00000028459 #22	ENSLLEG00000028494 #22	ENSLLEG00000028611 #22	ENSLLEG00000028654 #22	ENSLLEG00000028707 #22	ENSLLEG00000028813	ENSLLEG00000028826 #22	ENSLLEG00000028876 #25	ENSLLEG00000029215	SMARCE1 (ENSLLEG00000029236) #26	ENSLLEG00000029469	CCR7 (ENSLLEG00000029475) #27	ENSLLEG00000029481	TNS4 (ENSLLEG00000029493) #28	IGFBP4 (ENSLLEG00000029557) #29	ENSLLEG00000029595	ENSLLEG00000029602	ENSLLEG00000029623	ENSLLEG00000029646
Frog	DUPLICATION
Frog	DUPLICATION
Frog	DUPLICATION
Frog	MODERN SPECIES	1	krt70 (ENSXETG00000012488) #13	krt19 (ENSXETG00000012482)	krt9.1 (ENSXETG00000038225)	krt9.2 (ENSXETG00000035234)	krt15.1 (ENSXETG00000029985) #15	krt15.2 (ENSXETG00000017467) #15	krt34 (ENSXETG00000036344) #16	krt23 (ENSXETG00000040013)	ENSXETG00000045090	krt12.1 (ENSXETG00000045813)	krt12.2 (ENSXETG00000021341) #22	krt20 (ENSXETG00000030511)	krt12.3 (ENSXETG00000025345) #22	krt12.6 (ENSXETG00000037468) #22	krt53 (ENSXETG00000031985) #22	ENSXETG00000041456 #22	ENSXETG00000043984 #22	krt55 (ENSXETG00000025340) #22	krt55 (ENSXETG00000025338) #22	krt222 (ENSXETG00000036910) #25	smarce1 (ENSXETG00000021355) #26	ccr7 (ENSXETG00000042814) #27	tns4 (ENSXETG00000046357) #28	igfbp4 (ENSXETG00000042693) #29	arf11l.2 (ENSXETG00000044010)	col15a1 (ENSXETG00000036828)	top2a (ENSXETG00000021362) #30	gjd3 (ENSXETG00000042781) #31	ENSXETG00000048306	rara (ENSXETG00000024390) #32	wipf2 (ENSXETG00000024394) #33
Frog	MODERN SPECIES	1	krt19 (ENSXETG00000012482)	krt9.1 (ENSXETG00000038225)	krt9.2 (ENSXETG00000035234)	krt15.1 (ENSXETG00000029985) #15	krt15.2 (ENSXETG00000017467) #15	krt34 (ENSXETG00000036344) #16	krt23 (ENSXETG00000040013)	ENSXETG00000045090	krt12.1 (ENSXETG00000045813)	krt12.2 (ENSXETG00000021341) #22	krt20 (ENSXETG00000030511)	krt12.3 (ENSXETG00000025345) #22	krt12.6 (ENSXETG00000037468) #22	krt53 (ENSXETG00000031985) #22	ENSXETG00000041456 #22	ENSXETG00000043984 #22	krt55 (ENSXETG00000025340) #22	krt55 (ENSXETG00000025338) #22	krt222 (ENSXETG00000036910) #25	smarce1 (ENSXETG00000021355) #26	ccr7 (ENSXETG00000042814) #27	tns4 (ENSXETG00000046357) #28	igfbp4 (ENSXETG00000042693) #29	arf11l.2 (ENSXETG00000044010)	col15a1 (ENSXETG00000036828)	top2a (ENSXETG00000021362) #30	gjd3 (ENSXETG00000042781) #31	ENSXETG00000048306	rara (ENSXETG00000024390) #32	wipf2 (ENSXETG00000024394) #33	rapgefl1 (ENSXETG00000024396) #35
Frog	MODERN SPECIES	1	krt9.1 (ENSXETG00000038225)	krt9.2 (ENSXETG00000035234)	krt15.1 (ENSXETG00000029985) #15	krt15.2 (ENSXETG00000017467) #15	krt34 (ENSXETG00000036344) #16	krt23 (ENSXETG00000040013)	ENSXETG00000045090	krt12.1 (ENSXETG00000045813)	krt12.2 (ENSXETG00000021341) #22	krt20 (ENSXETG00000030511)	krt12.3 (ENSXETG00000025345) #22	krt12.6 (ENSXETG00000037468) #22	krt53 (ENSXETG00000031985) #22	ENSXETG00000041456 #22	ENSXETG00000043984 #22	krt55 (ENSXETG00000025340) #22	krt55 (ENSXETG00000025338) #22	krt222 (ENSXETG00000036910) #25	smarce1 (ENSXETG00000021355) #26	ccr7 (ENSXETG00000042814) #27	tns4 (ENSXETG00000046357) #28	igfbp4 (ENSXETG00000042693) #29	arf11l.2 (ENSXETG00000044010)	col15a1 (ENSXETG00000036828)	top2a (ENSXETG00000021362) #30	gjd3 (ENSXETG00000042781) #31	ENSXETG00000048306	rara (ENSXETG00000024390) #32	wipf2 (ENSXETG00000024394) #33	rapgefl1 (ENSXETG00000024396) #35	casc3 (ENSXETG00000024395) #36
Frog	MODERN SPECIES	1	eif1 (ENSXETG00000025051) #8	krt70 (ENSXETG00000012488) #13	krt19 (ENSXETG00000012482)	krt9.1 (ENSXETG00000038225)	krt9.2 (ENSXETG00000035234)	krt15.1 (ENSXETG00000029985) #15	krt15.2 (ENSXETG00000017467) #15	krt34 (ENSXETG00000036344) #16	krt23 (ENSXETG00000040013)	ENSXETG00000045090	krt12.1 (ENSXETG00000045813)	krt12.2 (ENSXETG00000021341) #22	krt20 (ENSXETG00000030511)	krt12.3 (ENSXETG00000025345) #22	krt12.6 (ENSXETG00000037468) #22	krt53 (ENSXETG00000031985) #22	ENSXETG00000041456 #22	ENSXETG00000043984 #22	krt55 (ENSXETG00000025340) #22	krt55 (ENSXETG00000025338) #22	krt222 (ENSXETG00000036910) #25	smarce1 (ENSXETG00000021355) #26	ccr7 (ENSXETG00000042814) #27	tns4 (ENSXETG00000046357) #28	igfbp4 (ENSXETG00000042693) #29	arf11l.2 (ENSXETG00000044010)	col15a1 (ENSXETG00000036828)	top2a (ENSXETG00000021362) #30	gjd3 (ENSXETG00000042781) #31	ENSXETG00000048306	rara (ENSXETG00000024390) #32
Anura	ANCESTRAL SPECIES	15	ENSGT00940000162183	ENSGT00390000014792.a #7	ENSGT00390000015789.c #8	ENSGT00940000155258 #13	ENSGT00950000182969.B.c.a.a.c	ENSGT00950000183311.a #15	ENSGT00940000154403 #14	ENSGT00950000183311.b.a #15	ENSGT00950000183311.b.b #15	ENSGT00940000161311 #16	ENSGT00940000161077	ENSGT00950000182969.B.d	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.m.b.b #22	ENSGT00940000159382.m.b.a #22	ENSGT00940000159382.m.a.b #22	ENSGT00940000159382.m.a.a #22	ENSGT00940000159382.n #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000165938.d	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000160144 #35	ENSGT00390000006930 #36
Frog	MODERN SPECIES	1	terf2ip (ENSXETG00000012487)	eif1 (ENSXETG00000025051) #8	krt70 (ENSXETG00000012488) #13	krt19 (ENSXETG00000012482)	krt9.1 (ENSXETG00000038225)	krt9.2 (ENSXETG00000035234)	krt15.1 (ENSXETG00000029985) #15	krt15.2 (ENSXETG00000017467) #15	krt34 (ENSXETG00000036344) #16	krt23 (ENSXETG00000040013)	ENSXETG00000045090	krt12.1 (ENSXETG00000045813)	krt12.2 (ENSXETG00000021341) #22	krt20 (ENSXETG00000030511)	krt12.3 (ENSXETG00000025345) #22	krt12.6 (ENSXETG00000037468) #22	krt53 (ENSXETG00000031985) #22	ENSXETG00000041456 #22	ENSXETG00000043984 #22	krt55 (ENSXETG00000025340) #22	krt55 (ENSXETG00000025338) #22	krt222 (ENSXETG00000036910) #25	smarce1 (ENSXETG00000021355) #26	ccr7 (ENSXETG00000042814) #27	tns4 (ENSXETG00000046357) #28	igfbp4 (ENSXETG00000042693) #29	arf11l.2 (ENSXETG00000044010)	col15a1 (ENSXETG00000036828)	top2a (ENSXETG00000021362) #30	gjd3 (ENSXETG00000042781) #31	ENSXETG00000048306
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000026866 #16	ENSLLEG00000026919 #16	ENSLLEG00000027000 #16	ENSLLEG00000027759 #16	ENSLLEG00000027858	ENSLLEG00000027886	KRT23 (ENSLLEG00000027913)	ENSLLEG00000027954	ENSLLEG00000028003	ENSLLEG00000028013	ENSLLEG00000028070 #22	ENSLLEG00000028103 #22	ENSLLEG00000028166 #22	ENSLLEG00000028459 #22	ENSLLEG00000028494 #22	ENSLLEG00000028611 #22	ENSLLEG00000028654 #22	ENSLLEG00000028707 #22	ENSLLEG00000028813	ENSLLEG00000028826 #22	ENSLLEG00000028876 #25	ENSLLEG00000029215	SMARCE1 (ENSLLEG00000029236) #26	ENSLLEG00000029469	CCR7 (ENSLLEG00000029475) #27	ENSLLEG00000029481	TNS4 (ENSLLEG00000029493) #28	IGFBP4 (ENSLLEG00000029557) #29	ENSLLEG00000029595	ENSLLEG00000029602	ENSLLEG00000029623
Anura	DUPLICATION
Anura	ANCESTRAL SPECIES	15	ENSGT00940000156395	ENSGT00940000162183	ENSGT00390000014792.a #7	ENSGT00390000015789.c #8	ENSGT00940000155258 #13	ENSGT00950000182969.B.c.a.a.c	ENSGT00950000183311.a #15	ENSGT00940000154403 #14	ENSGT00950000183311.b.a #15	ENSGT00950000183311.b.b #15	ENSGT00940000161311 #16	ENSGT00940000161077	ENSGT00950000182969.B.d	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.m.b.b #22	ENSGT00940000159382.m.b.a #22	ENSGT00940000159382.m.a.b #22	ENSGT00940000159382.m.a.a #22	ENSGT00940000159382.n #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000165938.d	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000160144 #35
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000026765 #13	ENSLLEG00000026866 #16	ENSLLEG00000026919 #16	ENSLLEG00000027000 #16	ENSLLEG00000027759 #16	ENSLLEG00000027858	ENSLLEG00000027886	KRT23 (ENSLLEG00000027913)	ENSLLEG00000027954	ENSLLEG00000028003	ENSLLEG00000028013	ENSLLEG00000028070 #22	ENSLLEG00000028103 #22	ENSLLEG00000028166 #22	ENSLLEG00000028459 #22	ENSLLEG00000028494 #22	ENSLLEG00000028611 #22	ENSLLEG00000028654 #22	ENSLLEG00000028707 #22	ENSLLEG00000028813	ENSLLEG00000028826 #22	ENSLLEG00000028876 #25	ENSLLEG00000029215	SMARCE1 (ENSLLEG00000029236) #26	ENSLLEG00000029469	CCR7 (ENSLLEG00000029475) #27	ENSLLEG00000029481	TNS4 (ENSLLEG00000029493) #28	IGFBP4 (ENSLLEG00000029557) #29	ENSLLEG00000029595	ENSLLEG00000029602
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000026388	ENSLLEG00000026422 #16	ENSLLEG00000026765 #13	ENSLLEG00000026866 #16	ENSLLEG00000026919 #16	ENSLLEG00000027000 #16	ENSLLEG00000027759 #16	ENSLLEG00000027858	ENSLLEG00000027886	KRT23 (ENSLLEG00000027913)	ENSLLEG00000027954	ENSLLEG00000028003	ENSLLEG00000028013	ENSLLEG00000028070 #22	ENSLLEG00000028103 #22	ENSLLEG00000028166 #22	ENSLLEG00000028459 #22	ENSLLEG00000028494 #22	ENSLLEG00000028611 #22	ENSLLEG00000028654 #22	ENSLLEG00000028707 #22	ENSLLEG00000028813	ENSLLEG00000028826 #22	ENSLLEG00000028876 #25	ENSLLEG00000029215	SMARCE1 (ENSLLEG00000029236) #26	ENSLLEG00000029469	CCR7 (ENSLLEG00000029475) #27	ENSLLEG00000029481	TNS4 (ENSLLEG00000029493) #28	IGFBP4 (ENSLLEG00000029557) #29
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000026422 #16	ENSLLEG00000026765 #13	ENSLLEG00000026866 #16	ENSLLEG00000026919 #16	ENSLLEG00000027000 #16	ENSLLEG00000027759 #16	ENSLLEG00000027858	ENSLLEG00000027886	KRT23 (ENSLLEG00000027913)	ENSLLEG00000027954	ENSLLEG00000028003	ENSLLEG00000028013	ENSLLEG00000028070 #22	ENSLLEG00000028103 #22	ENSLLEG00000028166 #22	ENSLLEG00000028459 #22	ENSLLEG00000028494 #22	ENSLLEG00000028611 #22	ENSLLEG00000028654 #22	ENSLLEG00000028707 #22	ENSLLEG00000028813	ENSLLEG00000028826 #22	ENSLLEG00000028876 #25	ENSLLEG00000029215	SMARCE1 (ENSLLEG00000029236) #26	ENSLLEG00000029469	CCR7 (ENSLLEG00000029475) #27	ENSLLEG00000029481	TNS4 (ENSLLEG00000029493) #28	IGFBP4 (ENSLLEG00000029557) #29	ENSLLEG00000029595
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000026329 #16	ENSLLEG00000026388	ENSLLEG00000026422 #16	ENSLLEG00000026765 #13	ENSLLEG00000026866 #16	ENSLLEG00000026919 #16	ENSLLEG00000027000 #16	ENSLLEG00000027759 #16	ENSLLEG00000027858	ENSLLEG00000027886	KRT23 (ENSLLEG00000027913)	ENSLLEG00000027954	ENSLLEG00000028003	ENSLLEG00000028013	ENSLLEG00000028070 #22	ENSLLEG00000028103 #22	ENSLLEG00000028166 #22	ENSLLEG00000028459 #22	ENSLLEG00000028494 #22	ENSLLEG00000028611 #22	ENSLLEG00000028654 #22	ENSLLEG00000028707 #22	ENSLLEG00000028813	ENSLLEG00000028826 #22	ENSLLEG00000028876 #25	ENSLLEG00000029215	SMARCE1 (ENSLLEG00000029236) #26	ENSLLEG00000029469	CCR7 (ENSLLEG00000029475) #27	ENSLLEG00000029481	TNS4 (ENSLLEG00000029493) #28
Frog	MODERN SPECIES	1	gast (ENSXETG00000012490) #7	terf2ip (ENSXETG00000012487)	eif1 (ENSXETG00000025051) #8	krt70 (ENSXETG00000012488) #13	krt19 (ENSXETG00000012482)	krt9.1 (ENSXETG00000038225)	krt9.2 (ENSXETG00000035234)	krt15.1 (ENSXETG00000029985) #15	krt15.2 (ENSXETG00000017467) #15	krt34 (ENSXETG00000036344) #16	krt23 (ENSXETG00000040013)	ENSXETG00000045090	krt12.1 (ENSXETG00000045813)	krt12.2 (ENSXETG00000021341) #22	krt20 (ENSXETG00000030511)	krt12.3 (ENSXETG00000025345) #22	krt12.6 (ENSXETG00000037468) #22	krt53 (ENSXETG00000031985) #22	ENSXETG00000041456 #22	ENSXETG00000043984 #22	krt55 (ENSXETG00000025340) #22	krt55 (ENSXETG00000025338) #22	krt222 (ENSXETG00000036910) #25	smarce1 (ENSXETG00000021355) #26	ccr7 (ENSXETG00000042814) #27	tns4 (ENSXETG00000046357) #28	igfbp4 (ENSXETG00000042693) #29	arf11l.2 (ENSXETG00000044010)	col15a1 (ENSXETG00000036828)	top2a (ENSXETG00000021362) #30	gjd3 (ENSXETG00000042781) #31
Anura	ANCESTRAL SPECIES	15	ENSGT00940000153814.b	ENSGT00940000156395	ENSGT00940000162183	ENSGT00390000014792.a #7	ENSGT00390000015789.c #8	ENSGT00940000155258 #13	ENSGT00950000182969.B.c.a.a.c	ENSGT00950000183311.a #15	ENSGT00940000154403 #14	ENSGT00950000183311.b.a #15	ENSGT00950000183311.b.b #15	ENSGT00940000161311 #16	ENSGT00940000161077	ENSGT00950000182969.B.d	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.m.b.b #22	ENSGT00940000159382.m.b.a #22	ENSGT00940000159382.m.a.b #22	ENSGT00940000159382.m.a.a #22	ENSGT00940000159382.n #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000165938.d	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000026285 #16	ENSLLEG00000026329 #16	ENSLLEG00000026388	ENSLLEG00000026422 #16	ENSLLEG00000026765 #13	ENSLLEG00000026866 #16	ENSLLEG00000026919 #16	ENSLLEG00000027000 #16	ENSLLEG00000027759 #16	ENSLLEG00000027858	ENSLLEG00000027886	KRT23 (ENSLLEG00000027913)	ENSLLEG00000027954	ENSLLEG00000028003	ENSLLEG00000028013	ENSLLEG00000028070 #22	ENSLLEG00000028103 #22	ENSLLEG00000028166 #22	ENSLLEG00000028459 #22	ENSLLEG00000028494 #22	ENSLLEG00000028611 #22	ENSLLEG00000028654 #22	ENSLLEG00000028707 #22	ENSLLEG00000028813	ENSLLEG00000028826 #22	ENSLLEG00000028876 #25	ENSLLEG00000029215	SMARCE1 (ENSLLEG00000029236) #26	ENSLLEG00000029469	CCR7 (ENSLLEG00000029475) #27	ENSLLEG00000029481
Frog	MODERN SPECIES	1	jup (ENSXETG00000006970)	hap1 (ENSXETG00000012489)	gast (ENSXETG00000012490) #7	terf2ip (ENSXETG00000012487)	eif1 (ENSXETG00000025051) #8	krt70 (ENSXETG00000012488) #13	krt19 (ENSXETG00000012482)	krt9.1 (ENSXETG00000038225)	krt9.2 (ENSXETG00000035234)	krt15.1 (ENSXETG00000029985) #15	krt15.2 (ENSXETG00000017467) #15	krt34 (ENSXETG00000036344) #16	krt23 (ENSXETG00000040013)	ENSXETG00000045090	krt12.1 (ENSXETG00000045813)	krt12.2 (ENSXETG00000021341) #22	krt20 (ENSXETG00000030511)	krt12.3 (ENSXETG00000025345) #22	krt12.6 (ENSXETG00000037468) #22	krt53 (ENSXETG00000031985) #22	ENSXETG00000041456 #22	ENSXETG00000043984 #22	krt55 (ENSXETG00000025340) #22	krt55 (ENSXETG00000025338) #22	krt222 (ENSXETG00000036910) #25	smarce1 (ENSXETG00000021355) #26	ccr7 (ENSXETG00000042814) #27	tns4 (ENSXETG00000046357) #28	igfbp4 (ENSXETG00000042693) #29	arf11l.2 (ENSXETG00000044010)	col15a1 (ENSXETG00000036828)
Anura	ANCESTRAL SPECIES	15	ENSGT00390000015789.c #8	ENSGT00940000155258 #13	ENSGT00950000182969.B.c.a.a.c	ENSGT00950000183311.a #15	ENSGT00940000154403 #14	ENSGT00950000183311.b.a #15	ENSGT00950000183311.b.b #15	ENSGT00940000161311 #16	ENSGT00940000161077	ENSGT00950000182969.B.d	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.m.b.b #22	ENSGT00940000159382.m.b.a #22	ENSGT00940000159382.m.a.b #22	ENSGT00940000159382.m.a.a #22	ENSGT00940000159382.n #22	ENSGT00940000159655 #25	ENSGT00390000003628.b #26	ENSGT01030000234667.a.a.a.a.b #27	ENSGT00940000160142 #28	ENSGT00940000159647 #29	ENSGT00940000165938.d	ENSGT00940000158212.A	ENSGT00940000157539 #30	ENSGT01090000260005.a.b.a.a #31	ENSGT00940000159997 #32	ENSGT00530000063498.A #33	ENSGT00940000160144 #35	ENSGT00390000006930 #36	ENSGT00390000018292 #37	ENSGT00940000160548
Frog	MODERN SPECIES	1	krt9.2 (ENSXETG00000035234)	krt15.1 (ENSXETG00000029985) #15	krt15.2 (ENSXETG00000017467) #15	krt34 (ENSXETG00000036344) #16	krt23 (ENSXETG00000040013)	ENSXETG00000045090	krt12.1 (ENSXETG00000045813)	krt12.2 (ENSXETG00000021341) #22	krt20 (ENSXETG00000030511)	krt12.3 (ENSXETG00000025345) #22	krt12.6 (ENSXETG00000037468) #22	krt53 (ENSXETG00000031985) #22	ENSXETG00000041456 #22	ENSXETG00000043984 #22	krt55 (ENSXETG00000025340) #22	krt55 (ENSXETG00000025338) #22	krt222 (ENSXETG00000036910) #25	smarce1 (ENSXETG00000021355) #26	ccr7 (ENSXETG00000042814) #27	tns4 (ENSXETG00000046357) #28	igfbp4 (ENSXETG00000042693) #29	arf11l.2 (ENSXETG00000044010)	col15a1 (ENSXETG00000036828)	top2a (ENSXETG00000021362) #30	gjd3 (ENSXETG00000042781) #31	ENSXETG00000048306	rara (ENSXETG00000024390) #32	wipf2 (ENSXETG00000024394) #33	rapgefl1 (ENSXETG00000024396) #35	casc3 (ENSXETG00000024395) #36	msl1 (ENSXETG00000027594) #37
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000027858	ENSLLEG00000027886	KRT23 (ENSLLEG00000027913)	ENSLLEG00000027954	ENSLLEG00000028003	ENSLLEG00000028013	ENSLLEG00000028070 #22	ENSLLEG00000028103 #22	ENSLLEG00000028166 #22	ENSLLEG00000028459 #22	ENSLLEG00000028494 #22	ENSLLEG00000028611 #22	ENSLLEG00000028654 #22	ENSLLEG00000028707 #22	ENSLLEG00000028813	ENSLLEG00000028826 #22	ENSLLEG00000028876 #25	ENSLLEG00000029215	SMARCE1 (ENSLLEG00000029236) #26	ENSLLEG00000029469	CCR7 (ENSLLEG00000029475) #27	ENSLLEG00000029481	TNS4 (ENSLLEG00000029493) #28	IGFBP4 (ENSLLEG00000029557) #29	ENSLLEG00000029595	ENSLLEG00000029602	ENSLLEG00000029623	ENSLLEG00000029646	ENSLLEG00000021318	ENSLLEG00000021336	TOP2A (ENSLLEG00000021404) #30