Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000163931	ENSGT00940000154448.b.b.b.b.e.a	ENSGT00940000159486.e.a	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433 #12	ENSGT00940000162736	ENSGT00940000160295 #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000163416	ENSGT00940000164263	ENSGT00940000163931	ENSGT00940000159486.f	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433 #12	ENSGT00940000160295 #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000164263	ENSGT00940000153980.j.a.a #7	ENSGT00940000153980.j.a.b.b #9	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000159486.f	ENSGT00940000155433 #12	ENSGT00940000160295 #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Lesser Egyptian jerboa	MODERN SPECIES	56	ENSJJAG00000022802 #7	ENSJJAG00000021359 #8	ENSJJAG00000021927 #9	ENSJJAG00000022794 #10	ENSJJAG00000006288 #11	ENSJJAG00000005972 #12	ENSJJAG00000022051 #13	ENSJJAG00000006226 #14	Krtap3-1 (ENSJJAG00000006011) #15	ENSJJAG00000006371 #16	ENSJJAG00000006041 #17	Krt40 (ENSJJAG00000022059) #18	Krt39 (ENSJJAG00000021955) #19	Krt23 (ENSJJAG00000022215) #20	Krt20 (ENSJJAG00000022728) #21	Krt12 (ENSJJAG00000021975) #22	Krt10 (ENSJJAG00000022778) #23	Krt28 (ENSJJAG00000022837) #24	Krt27 (ENSJJAG00000023044) #25	Krt26 (ENSJJAG00000009739) #26	Krt25 (ENSJJAG00000023627) #27	Krt24 (ENSJJAG00000023143) #28	Krt222 (ENSJJAG00000021966) #29	Smarce1 (ENSJJAG00000023161) #30	Ccr7 (ENSJJAG00000002196) #31	Tns4 (ENSJJAG00000003969) #32	Igfbp4 (ENSJJAG00000000680) #33	Top2a (ENSJJAG00000007045) #34	Gjd3 (ENSJJAG00000009539) #35	Rara (ENSJJAG00000001668) #36	Cdc6 (ENSJJAG00000022817) #37
Muroidea	ANCESTRAL SPECIES		ENSGT00940000159486.f.f	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000159486.f.e.a.a.a	ENSGT00940000155433 #12	ENSGT00940000160295.ib.a #14	ENSGT00940000160295.ib.b.b.a.a #14	ENSGT00940000160295.ib.b.a #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000163416	ENSGT00940000164263	ENSGT00940000159486.f.f.b	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433 #12	ENSGT00940000160295.ib.a #14	ENSGT00940000160295.ib.b.a #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000154403.a.b	ENSGT00940000161311	ENSGT00940000161787	ENSGT00940000161991	ENSGT00940000153980.j.a.b.a.b ##9	ENSGT00940000163426	ENSGT00940000153980.j.a.a #7	ENSGT00940000160295.ib.a #14	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000153980.j.a.b.a.a.b ##9	ENSGT00940000163658	ENSGT00940000159486.f.e.a.b	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433 #12	ENSGT00940000160295.ib.b.b.a.b #14	ENSGT00940000160295.ib.b.b.a.a #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Northern American deer mouse	MODERN SPECIES	21	Gm11555 (ENSPEMG00000028694)	ENSPEMG00000027729	ENSPEMG00000028223 #12	ENSPEMG00000024614 #12	ENSPEMG00000030371 #12	ENSPEMG00000025752 #12	Krtap1-5 (ENSPEMG00000014953)	Krtap3-1 (ENSPEMG00000014982) #15	Gm11939 (ENSPEMG00000025106) ##17	ENSPEMG00000027732 #17	ENSPEMG00000030050 #17	Krt40 (ENSPEMG00000011683) #18	Krt39 (ENSPEMG00000013051) #19	Krt23 (ENSPEMG00000010375) #20	Krt20 (ENSPEMG00000008907) #21	Krt12 (ENSPEMG00000012317) #22	Krt10 (ENSPEMG00000016211) #23	Krt28 (ENSPEMG00000017906) #24	Krt27 (ENSPEMG00000002310) #25	Krt26 (ENSPEMG00000012535) #26	Krt25 (ENSPEMG00000016149) #27	Krt24 (ENSPEMG00000017697) #28	Krt222 (ENSPEMG00000011259) #29	Smarce1 (ENSPEMG00000018043) #30	Ccr7 (ENSPEMG00000009706) #31	Tns4 (ENSPEMG00000020329) #32	Igfbp4 (ENSPEMG00000014210) #33	Top2a (ENSPEMG00000016393) #34	Gjd3 (ENSPEMG00000014917) #35	Rara (ENSPEMG00000010534) #36	Cdc6 (ENSPEMG00000012427) #37
Prairie vole	MODERN SPECIES	114	Gm11563 (ENSMOCG00000017454)	ENSMOCG00000009228 #12	ENSMOCG00000005151 #12	ENSMOCG00000005136 #12	ENSMOCG00000005678 #12	ENSMOCG00000010132 #14	ENSMOCG00000003960 #14	Krtap1-5 (ENSMOCG00000012540)	Krtap3-1 (ENSMOCG00000020675) #15	ENSMOCG00000005111 #17	ENSMOCG00000002845 #17	Krt40 (ENSMOCG00000016435) #18	Krt39 (ENSMOCG00000018914) #19	Krt23 (ENSMOCG00000014828) #20	Krt20 (ENSMOCG00000002735) #21	Krt12 (ENSMOCG00000001503) #22	Krt10 (ENSMOCG00000009134) #23	Krt28 (ENSMOCG00000007496) #24	Krt27 (ENSMOCG00000005020) #25	Krt26 (ENSMOCG00000014953) #26	Krt25 (ENSMOCG00000020569) #27	Krt24 (ENSMOCG00000017266) #28	Krt222 (ENSMOCG00000021148) #29	ENSMOCG00000015059 #30	Ccr7 (ENSMOCG00000004292) #31	Tns4 (ENSMOCG00000022959) #32	Igfbp4 (ENSMOCG00000021157) #33	Top2a (ENSMOCG00000013182) #34	Gjd3 (ENSMOCG00000005264) #35	Rara (ENSMOCG00000016096) #36	Cdc6 (ENSMOCG00000021152) #37
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000163658	ENSGT00940000164459	ENSGT00840000130699	ENSGT00940000159486.f.f.a.b	ENSGT00940000163416	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433 #12	ENSGT00940000160295.ib.b.b.a.b #14	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Golden Hamster	MODERN SPECIES	674					ENSMAUG00000021591	ENSMAUG00000014874	ENSMAUG00000016423	ENSMAUG00000010652	Krtap1-3 (ENSMAUG00000013235) #14	Krtap3-1 (ENSMAUG00000010133) #15	ENSMAUG00000010087 #17	Krt40 (ENSMAUG00000019288) #18	Krt39 (ENSMAUG00000011575) #19	Krt23 (ENSMAUG00000015956) #20	Krt20 (ENSMAUG00000012821) #21	Krt12 (ENSMAUG00000021614) #22	Krt10 (ENSMAUG00000022010) #23	Krt28 (ENSMAUG00000016117) #24	Krt27 (ENSMAUG00000010781) #25	Krt26 (ENSMAUG00000009507) #26	Krt25 (ENSMAUG00000016144) #27	Krt24 (ENSMAUG00000000934) #28	Krt222 (ENSMAUG00000009280) #29	Smarce1 (ENSMAUG00000006265) #30	Ccr7 (ENSMAUG00000021249) #31	Tns4 (ENSMAUG00000016240) #32	Igfbp4 (ENSMAUG00000008494) #33	Top2a (ENSMAUG00000010103) #34	Rara (ENSMAUG00000014473) #36	Cdc6 (ENSMAUG00000004369) #37	Wipf2 (ENSMAUG00000002857)
Chinese hamster chok1gshd	MODERN SPECIES	33	ENSCGRG00001012466 #12	ENSCGRG00001024559 #12	ENSCGRG00001003344 #12	ENSCGRG00001012468 #14	ENSCGRG00001021738 #14	ENSCGRG00001009734 #14	Krtap9-3 (ENSCGRG00001007897) #14	Krtap3-1 (ENSCGRG00001004619) #15	Gm11939 (ENSCGRG00001005088) ##17	ENSCGRG00001006304 #17	ENSCGRG00001012848 #17	Krt40 (ENSCGRG00001000083) #18	Krt39 (ENSCGRG00001019993) #19	Krt23 (ENSCGRG00001000115) #20	Krt20 (ENSCGRG00001022236) #21	Krt12 (ENSCGRG00001000815) #22	Krt10 (ENSCGRG00001006589) #23	Krt28 (ENSCGRG00001010998) #24	Krt27 (ENSCGRG00001020156) #25	Krt26 (ENSCGRG00001023067) #26	Krt25 (ENSCGRG00001019023) #27	Krt24 (ENSCGRG00001016600) #28	Krt222 (ENSCGRG00001001412) #29	Smarce1 (ENSCGRG00001010211) #30	Ccr7 (ENSCGRG00001022917) #31	Tns4 (ENSCGRG00001016573) #32	Igfbp4 (ENSCGRG00001002713) #33	Top2a (ENSCGRG00001020913) #34	Gjd3 (ENSCGRG00001008548) #35	Rara (ENSCGRG00001021724) #36	CDC6 (ENSCGRG00001023158) #37
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000164263	ENSGT00940000159486.f.f.b	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433 #12	ENSGT00940000160295.ib.a #14	ENSGT00940000160295.ib.b.b.b #14	ENSGT00940000160295.ib.b.a #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Mus	ANCESTRAL SPECIES	2	ENSGT00940000159486.f.e.b	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433.fb.b #12	ENSGT00940000155433.fb.a #12	ENSGT00940000160295.ib.a #14	ENSGT00940000160295.ib.b.b.b #14	ENSGT00940000160295.ib.b.a #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000159486.f.e.a.a.a	ENSGT00940000155433.fb.b.a #12	ENSGT00940000155433.fb.a #12	ENSGT00940000155433.fb.b.b #12	ENSGT00940000160295.ib.a #14	ENSGT00940000160295.ib.b.b.b #14	ENSGT00940000160295.ib.b.a #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000163416	ENSGT00840000130699.b	ENSGT00840000130699.a.b	ENSGT00940000155433.fb.b.b #12	ENSGT00940000160295.ib.a #14	ENSGT00940000160295.ib.b.b.b #14	ENSGT00940000160295.ib.b.a #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Mouse	MODERN SPECIES	2	Krtap2-4 (ENSMUSG00000060756) #12	Gm11937 (ENSMUSG00000058725) #12	Gm11938 (ENSMUSG00000057674) #12	Krtap9-3 (ENSMUSG00000049809) #14	Krtap1-3 (ENSMUSG00000078131) #14	Krtap1-4 (ENSMUSG00000075567) #14	Krtap1-5 (ENSMUSG00000047253)	Krtap3-1 (ENSMUSG00000047564) #15	Gm11939 (ENSMUSG00000078132) ##17	Krtap3-2 (ENSMUSG00000069721) #17	Krtap3-3 (ENSMUSG00000069722) #17	Krt40 (ENSMUSG00000059169) #18	Krt39 (ENSMUSG00000064165) #19	Krt23 (ENSMUSG00000006777) #20	Krt20 (ENSMUSG00000035775) #21	Krt12 (ENSMUSG00000020912) #22	Krt10 (ENSMUSG00000019761) #23	Krt28 (ENSMUSG00000055937) #24	Krt27 (ENSMUSG00000017588) #25	Krt26 (ENSMUSG00000075570) #26	Krt25 (ENSMUSG00000035831) #27	Krt24 (ENSMUSG00000020913) #28	Krt222 (ENSMUSG00000035849) #29	Smarce1 (ENSMUSG00000037935) #30	Ccr7 (ENSMUSG00000037944) #31	Tns4 (ENSMUSG00000017607) #32	Igfbp4 (ENSMUSG00000017493) #33	Top2a (ENSMUSG00000020914) #34	Gjd3 (ENSMUSG00000047197) #35	Rara (ENSMUSG00000037992) #36	Cdc6 (ENSMUSG00000017499) #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000159486.f.f.b.a	ENSGT00940000154448.b.b.a.b.b.a	ENSGT00940000154448.b.b.a.a.b	ENSGT00940000155433.fb.a #12	ENSGT00940000160295.ib.a #14	ENSGT00940000160295.ib.b.b.b #14	ENSGT00940000160295.ib.b.a #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Steppe mouse	MODERN SPECIES	2890	ENSMSIG00000025810	ENSMSIG00000025818	ENSMSIG00000025826	Krtap2-4 (ENSMSIG00000025829) #12	Krtap9-3 (ENSMSIG00000025835) #14	Krtap1-3 (ENSMSIG00000025841) #14	Krtap1-4 (ENSMSIG00000025846) #14	Krtap1-5 (ENSMSIG00000025851)	Krtap3-1 (ENSMSIG00000025854) #15	Gm11939 (ENSMSIG00000025860) ##17	ENSMSIG00000025863 #17	Krt40 (ENSMSIG00000025867) #18	Krt39 (ENSMSIG00000025878) #19	Krt23 (ENSMSIG00000025887) #20	Krt20 (ENSMSIG00000025894) #21	Krt12 (ENSMSIG00000025906) #22	Krt10 (ENSMSIG00000025917) #23	Krt28 (ENSMSIG00000025924) #24	Krt27 (ENSMSIG00000025937) #25	Krt26 (ENSMSIG00000025947) #26	Krt25 (ENSMSIG00000025951) #27	Krt24 (ENSMSIG00000025961) #28	Krt222 (ENSMSIG00000025974) #29	ENSMSIG00000025987 #30	ENSMSIG00000026011	Ccr7 (ENSMSIG00000026032) #31	Tns4 (ENSMSIG00000026039) #32	Igfbp4 (ENSMSIG00000026061) #33	Top2a (ENSMSIG00000026083) #34	Gjd3 (ENSMSIG00000026168) #35	Rara (ENSMSIG00000026176) #36
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0017976	MGP_SPRETEiJ_G0017975 #12	MGP_SPRETEiJ_G0017974 #12	Krtap9-3 (MGP_SPRETEiJ_G0017973) #14	Krtap1-3 (MGP_SPRETEiJ_G0017972) #14	Krtap1-4 (MGP_SPRETEiJ_G0017971) #14	Krtap1-5 (MGP_SPRETEiJ_G0017970)	Krtap3-1 (MGP_SPRETEiJ_G0017969) #15	Gm11939 (MGP_SPRETEiJ_G0017968) ##17	MGP_SPRETEiJ_G0017967 ##17	MGP_SPRETEiJ_G0017966 #17	Krt40 (MGP_SPRETEiJ_G0017965) #18	Krt39 (MGP_SPRETEiJ_G0017964) #19	Krt23 (MGP_SPRETEiJ_G0017963) #20	Krt20 (MGP_SPRETEiJ_G0017962) #21	Krt12 (MGP_SPRETEiJ_G0017961) #22	Krt10 (MGP_SPRETEiJ_G0017960) #23	Krt28 (MGP_SPRETEiJ_G0017959) #24	Krt27 (MGP_SPRETEiJ_G0017958) #25	Krt26 (MGP_SPRETEiJ_G0017957) #26	Krt25 (MGP_SPRETEiJ_G0017956) #27	Krt24 (MGP_SPRETEiJ_G0017955) #28	Krt222 (MGP_SPRETEiJ_G0017954) #29	Smarce1 (MGP_SPRETEiJ_G0017953) #30	Ccr7 (MGP_SPRETEiJ_G0017952) #31	Tns4 (MGP_SPRETEiJ_G0017951) #32	Igfbp4 (MGP_SPRETEiJ_G0017950) #33	Top2a (MGP_SPRETEiJ_G0017949) #34	Gjd3 (MGP_SPRETEiJ_G0017948) #35	Rara (MGP_SPRETEiJ_G0017947) #36	Cdc6 (MGP_SPRETEiJ_G0017946) #37
Ryukyu mouse	MODERN SPECIES	2	MGP_CAROLIEiJ_G0017132 #12	MGP_CAROLIEiJ_G0017131 #12	Gm11938 (MGP_CAROLIEiJ_G0017130) #12	Krtap9-3 (MGP_CAROLIEiJ_G0017129) #14	Krtap1-3 (MGP_CAROLIEiJ_G0017128) #14	Krtap1-4 (MGP_CAROLIEiJ_G0017127) #14	Krtap1-5 (MGP_CAROLIEiJ_G0017126)	Krtap3-1 (MGP_CAROLIEiJ_G0017125) #15	Gm11939 (MGP_CAROLIEiJ_G0017124) ##17	MGP_CAROLIEiJ_G0017123 #17	MGP_CAROLIEiJ_G0017122 #17	Krt40 (MGP_CAROLIEiJ_G0017121) #18	Krt39 (MGP_CAROLIEiJ_G0017120) #19	Krt23 (MGP_CAROLIEiJ_G0017119) #20	Krt20 (MGP_CAROLIEiJ_G0017118) #21	Krt12 (MGP_CAROLIEiJ_G0017117) #22	Krt10 (MGP_CAROLIEiJ_G0017116) #23	Krt28 (MGP_CAROLIEiJ_G0017115) #24	Krt27 (MGP_CAROLIEiJ_G0017114) #25	Krt26 (MGP_CAROLIEiJ_G0017113) #26	Krt25 (MGP_CAROLIEiJ_G0017112) #27	Krt24 (MGP_CAROLIEiJ_G0017111) #28	Krt222 (MGP_CAROLIEiJ_G0017110) #29	Smarce1 (MGP_CAROLIEiJ_G0017109) #30	Ccr7 (MGP_CAROLIEiJ_G0017108) #31	Tns4 (MGP_CAROLIEiJ_G0017107) #32	Igfbp4 (MGP_CAROLIEiJ_G0017106) #33	Top2a (MGP_CAROLIEiJ_G0017105) #34	Gjd3 (MGP_CAROLIEiJ_G0017104) #35	Rara (MGP_CAROLIEiJ_G0017103) #36	Cdc6 (MGP_CAROLIEiJ_G0017102) #37
Shrew mouse	MODERN SPECIES	5	MGP_PahariEiJ_G0018261 #12	MGP_PahariEiJ_G0018260 #12	MGP_PahariEiJ_G0018259 #12	Krtap9-3 (MGP_PahariEiJ_G0018258) #14	MGP_PahariEiJ_G0018257 #14	Krtap1-4 (MGP_PahariEiJ_G0018256) #14	Krtap1-5 (MGP_PahariEiJ_G0018255)	Krtap3-1 (MGP_PahariEiJ_G0018254) #15	Gm11939 (MGP_PahariEiJ_G0018253) ##17	MGP_PahariEiJ_G0018252 #17	MGP_PahariEiJ_G0018251 #17	Krt40 (MGP_PahariEiJ_G0018250) #18	Krt39 (MGP_PahariEiJ_G0018249) #19	Krt23 (MGP_PahariEiJ_G0018248) #20	Krt20 (MGP_PahariEiJ_G0018247) #21	Krt12 (MGP_PahariEiJ_G0018246) #22	Krt10 (MGP_PahariEiJ_G0018245) #23	MGP_PahariEiJ_G0018244 #24	Krt27 (MGP_PahariEiJ_G0018243) #25	Krt26 (MGP_PahariEiJ_G0018242) #26	Krt25 (MGP_PahariEiJ_G0018241) #27	Krt24 (MGP_PahariEiJ_G0018240) #28	Krt222 (MGP_PahariEiJ_G0018239) #29	Smarce1 (MGP_PahariEiJ_G0018238) #30	Ccr7 (MGP_PahariEiJ_G0018237) #31	Tns4 (MGP_PahariEiJ_G0018236) #32	MGP_PahariEiJ_G0018235 #33	Top2a (MGP_PahariEiJ_G0018234) #34	Gjd3 (MGP_PahariEiJ_G0018233) #35	Rara (MGP_PahariEiJ_G0018232) #36	Cdc6 (MGP_PahariEiJ_G0018231) #37
Rat	MODERN SPECIES	1	Krtap2-4l (ENSRNOG00000060847) #12	Krtap2-1 (ENSRNOG00000065269) #12	RGD1561684 (ENSRNOG00000063772) #12	LOC100365588 (ENSRNOG00000053283) #14	Krtap1-3 (ENSRNOG00000052388) #14	Krtap1-1 (ENSRNOG00000012955) #14	Krtap1-5 (ENSRNOG00000054186)	Krtap3-1 (ENSRNOG00000012544) #15	LOC120095334 (ENSRNOG00000060205) ##17	Krtap3-2 (ENSRNOG00000049383) #17	Krtap3-3 (ENSRNOG00000045678) #17	Krt40 (ENSRNOG00000013896) #18	Krt39 (ENSRNOG00000031422) #19	Krt23 (ENSRNOG00000011907) #20	Krt20 (ENSRNOG00000027139) #21	Krt12 (ENSRNOG00000011986) #22	Krt10 (ENSRNOG00000030170) #23	Krt28 (ENSRNOG00000011846) #24	Krt27 (ENSRNOG00000011628) #25	Krt26 (ENSRNOG00000033617) #26	Krt25 (ENSRNOG00000011196) #27	Krt24 (ENSRNOG00000010970) #28	Krt222 (ENSRNOG00000010839) #29	Smarce1 (ENSRNOG00000010676) #30	Ccr7 (ENSRNOG00000010665) #31	Tns4 (ENSRNOG00000027350) #32	Igfbp4 (ENSRNOG00000010635) #33	Top2a (ENSRNOG00000053047) #34	Gjd3 (ENSRNOG00000051691) #35	Rara (ENSRNOG00000009972) #36	Cdc6 (ENSRNOG00000027787) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	912	ENSNGAG00000014947 #12	ENSNGAG00000015529 #12	ENSNGAG00000015518 #12	ENSNGAG00000016313 #12	ENSNGAG00000015404 #14	ENSNGAG00000011138 #14	Krtap1-4 (ENSNGAG00000014313) #14	Krtap1-5 (ENSNGAG00000013189)	Krtap3-1 (ENSNGAG00000014967) #15	ENSNGAG00000014681 #17	ENSNGAG00000015155 #17	Krt40 (ENSNGAG00000002573) #18	Krt39 (ENSNGAG00000017057) #19	Krt23 (ENSNGAG00000003686) #20	Krt20 (ENSNGAG00000012272) #21	Krt12 (ENSNGAG00000017518) #22	Krt10 (ENSNGAG00000017006) #23	Krt28 (ENSNGAG00000020295) #24	Krt27 (ENSNGAG00000019608) #25	Krt26 (ENSNGAG00000010579) #26	Krt25 (ENSNGAG00000000113) #27	Krt24 (ENSNGAG00000017103) #28	Krt222 (ENSNGAG00000014550) #29	ENSNGAG00000015419 #30	Ccr7 (ENSNGAG00000010036) #31
Kangaroo rat	MODERN SPECIES	326	ENSDORG00000026358	ENSDORG00000023366	ENSDORG00000008477	ENSDORG00000023721	ENSDORG00000012266	ENSDORG00000024033 #12	ENSDORG00000028606 #12	ENSDORG00000016176 #14	ENSDORG00000025402 #14	ENSDORG00000024187 #17	ENSDORG00000023985 #17	Krt40 (ENSDORG00000016181) #18	Krt39 (ENSDORG00000008898) #19	Krt23 (ENSDORG00000001625) #20	Krt20 (ENSDORG00000001623) #21	ENSDORG00000001618 #22	Krt10 (ENSDORG00000006753) #23	Krt28 (ENSDORG00000006752) #24	Krt27 (ENSDORG00000006751) #25	Krt26 (ENSDORG00000006750) #26	Krt25 (ENSDORG00000006749) #27	Krt24 (ENSDORG00000016005) #28	Krt222 (ENSDORG00000016002) #29	Smarce1 (ENSDORG00000015999) #30	Ccr7 (ENSDORG00000014123) #31	Tns4 (ENSDORG00000016056) #32	Igfbp4 (ENSDORG00000016055) #33	Top2a (ENSDORG00000016054) #34	Rara (ENSDORG00000023922) #36	Cdc6 (ENSDORG00000015184) #37	ENSDORG00000026557
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000163931	ENSGT00940000154448.b.b.b.b.e.a	ENSGT00940000159486.e.a	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433 #12	ENSGT00940000162736	ENSGT00940000160295 #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000163658	ENSGT00940000164459	ENSGT00940000156135	ENSGT00940000163931	ENSGT00940000155433 #12	ENSGT00940000162736	ENSGT00940000160295 #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005002182 #12	ENSSVLG00005002196 #12	ENSSVLG00005002212	ENSSVLG00005002228 #14	ENSSVLG00005002240 #14	ENSSVLG00005002256 #14	KRTAP3-1 (ENSSVLG00005002274) #15	ENSSVLG00005002286 ##17	ENSSVLG00005002295 #17	ENSSVLG00005002312 #17	KRT40 (ENSSVLG00005002328) #18	KRT39 (ENSSVLG00005002361) #19	KRT23 (ENSSVLG00005002405) #20	KRT20 (ENSSVLG00005002465) #21	ENSSVLG00005002497 #22	ENSSVLG00005002521 #22	KRT10 (ENSSVLG00005002550) #23	KRT28 (ENSSVLG00005002575) #24	KRT27 (ENSSVLG00005002600) #25	KRT26 (ENSSVLG00005002624) #26	KRT25 (ENSSVLG00005002659) #27	KRT24 (ENSSVLG00005002690) #28	ENSSVLG00005002717	ENSSVLG00005002734	KRT222 (ENSSVLG00005002764) #29	SMARCE1 (ENSSVLG00005002799) #30	CCR7 (ENSSVLG00005002834) #31	TNS4 (ENSSVLG00005002865) #32	IGFBP4 (ENSSVLG00005002915) #33	TOP2A (ENSSVLG00005002957) #34	GJD3 (ENSSVLG00005002978) #35
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005002159 #12	ENSSVLG00005002182 #12	ENSSVLG00005002196 #12	ENSSVLG00005002212	ENSSVLG00005002228 #14	ENSSVLG00005002240 #14	ENSSVLG00005002256 #14	KRTAP3-1 (ENSSVLG00005002274) #15	ENSSVLG00005002286 ##17	ENSSVLG00005002295 #17	ENSSVLG00005002312 #17	KRT40 (ENSSVLG00005002328) #18	KRT39 (ENSSVLG00005002361) #19	KRT23 (ENSSVLG00005002405) #20	KRT20 (ENSSVLG00005002465) #21	ENSSVLG00005002497 #22	ENSSVLG00005002521 #22	KRT10 (ENSSVLG00005002550) #23	KRT28 (ENSSVLG00005002575) #24	KRT27 (ENSSVLG00005002600) #25	KRT26 (ENSSVLG00005002624) #26	KRT25 (ENSSVLG00005002659) #27	KRT24 (ENSSVLG00005002690) #28	ENSSVLG00005002717	ENSSVLG00005002734	KRT222 (ENSSVLG00005002764) #29	SMARCE1 (ENSSVLG00005002799) #30	CCR7 (ENSSVLG00005002834) #31	TNS4 (ENSSVLG00005002865) #32	IGFBP4 (ENSSVLG00005002915) #33	TOP2A (ENSSVLG00005002957) #34
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000161991	ENSGT00940000153980.j.a.b.b.c.a #9	ENSGT00940000163426	ENSGT00940000153980.j.a.b.b.c.b #9	ENSGT00940000153980.j.a.b.b.d #9	ENSGT00860000136155	ENSGT00940000163658	ENSGT00940000164459	ENSGT00390000001157.B ##17	ENSGT00390000001157.C.gc.b #17	ENSGT00390000001157.C.gc.a #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000153980.j.a.b.b.c.a #9	ENSGT00940000153980.j.a.a #7	ENSGT00940000153980.j.a.b.b.c.b #9	ENSGT00940000153980.j.a.b.b.d #9	ENSGT00940000163416	ENSGT00940000155433 #12	ENSGT00940000160295 #14	ENSGT00940000160443	ENSGT00390000001157.B ##17	ENSGT00390000001157.C.gc.b #17	ENSGT00390000001157.C.gc.a #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Arctic ground squirrel	MODERN SPECIES	46	KRTAP16-1 (ENSUPAG00010008810)	KRTAP29-1 (ENSUPAG00010008797)	ENSUPAG00010008769	ENSUPAG00010008754	ENSUPAG00010008750	ENSUPAG00010008626 #14	ENSUPAG00010008623	ENSUPAG00010008620 ##17	ENSUPAG00010008616 ##17	ENSUPAG00010008611 #17	ENSUPAG00010008604 #17	KRT40 (ENSUPAG00010008559) #18	KRT39 (ENSUPAG00010008539) #19	KRT23 (ENSUPAG00010008531) #20	KRT20 (ENSUPAG00010008517) #21	KRT12 (ENSUPAG00010008495) #22	KRT10 (ENSUPAG00010008483) #23	KRT28 (ENSUPAG00010008467) #24	KRT27 (ENSUPAG00010008459) #25	KRT26 (ENSUPAG00010008447) #26	KRT25 (ENSUPAG00010008441) #27	KRT24 (ENSUPAG00010008434) #28	KRT222 (ENSUPAG00010008427) #29	SMARCE1 (ENSUPAG00010008422) #30	CCR7 (ENSUPAG00010008418) #31	TNS4 (ENSUPAG00010008407) #32	IGFBP4 (ENSUPAG00010008401) #33	TOP2A (ENSUPAG00010008363) #34	RARA (ENSUPAG00010008330) #36	CDC6 (ENSUPAG00010008314) #37	WIPF2 (ENSUPAG00010008280)
Squirrel	MODERN SPECIES	90	ENSSTOG00000013195 #9	ENSSTOG00000031988	ENSSTOG00000032994	ENSSTOG00000033084	ENSSTOG00000027734 #12	ENSSTOG00000023947 #12	ENSSTOG00000029114 #12	ENSSTOG00000021731 #12	ENSSTOG00000012673 #14	ENSSTOG00000012507	ENSSTOG00000027131 ##17	ENSSTOG00000025033 #17	ENSSTOG00000019917 #17	KRT39 (ENSSTOG00000013190) #19	KRT23 (ENSSTOG00000013795) #20	KRT12 (ENSSTOG00000013295) #22	KRT10 (ENSSTOG00000002204) #23	KRT28 (ENSSTOG00000032131) #24	KRT27 (ENSSTOG00000002187) #25	KRT26 (ENSSTOG00000034065) #26	KRT25 (ENSSTOG00000002183) #27	KRT24 (ENSSTOG00000002178) #28	KRT222 (ENSSTOG00000029003) #29	SMARCE1 (ENSSTOG00000002175) #30	CCR7 (ENSSTOG00000001864) #31	TNS4 (ENSSTOG00000004876) #32	IGFBP4 (ENSSTOG00000029166) #33	TOP2A (ENSSTOG00000004794) #34	GJD3 (ENSSTOG00000019754) #35	RARA (ENSSTOG00000004746) #36	CDC6 (ENSSTOG00000004716) #37
Alpin marmot	MODERN SPECIES	42	ENSMMMG00000006802 #9	ENSMMMG00000007015	KRTAP16-1 (ENSMMMG00000007017)	ENSMMMG00000007037	ENSMMMG00000007061	ENSMMMG00000007085	ENSMMMG00000007146	ENSMMMG00000007150 ##17	ENSMMMG00000007156 ##17	ENSMMMG00000007160 #17	ENSMMMG00000007167 #17	KRT40 (ENSMMMG00000007173) #18	KRT39 (ENSMMMG00000007199) #19	KRT23 (ENSMMMG00000007227) #20	KRT20 (ENSMMMG00000007239) #21	KRT12 (ENSMMMG00000007259) #22	KRT10 (ENSMMMG00000007279) #23	KRT28 (ENSMMMG00000007288) #24	KRT27 (ENSMMMG00000007294) #25	KRT26 (ENSMMMG00000007307) #26	KRT25 (ENSMMMG00000007316) #27	KRT24 (ENSMMMG00000007326) #28	KRT222 (ENSMMMG00000007351) #29	SMARCE1 (ENSMMMG00000007365) #30	CCR7 (ENSMMMG00000007384) #31	TNS4 (ENSMMMG00000007390) #32	IGFBP4 (ENSMMMG00000007401) #33	TOP2A (ENSMMMG00000007405) #34	RARA (ENSMMMG00000007451) #36	CDC6 (ENSMMMG00000007492) #37	WIPF2 (ENSMMMG00000007511)
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000163658	ENSGT00940000156135	ENSGT00940000154448.b.b.b.b.e.b.b	ENSGT00940000159486.f	ENSGT00940000164263	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433 #12	ENSGT00940000160295 #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.B ##17	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00390000018397	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000153980.j.a.a #7	ENSGT00940000163658	ENSGT00940000156135	ENSGT00940000154448.b.b.b.b.e.b.b	ENSGT00940000163931	ENSGT00940000159486.e.a	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433 #12	ENSGT00940000160295 #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00390000018397	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000153980.j.a.a #7	ENSGT00940000163658	ENSGT00940000156135	ENSGT00940000154448.b.b.b.b.e.b.b	ENSGT00940000163931	ENSGT00940000159486.e.a	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433 #12	ENSGT00940000160295 #14	ENSGT00940000160443	ENSGT00390000001157.A.b #15	ENSGT00390000001157.C #17	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00390000018397	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36
Long-tailed chinchilla	MODERN SPECIES	158	ENSCLAG00000015082	ENSCLAG00000017906	ENSCLAG00000015077	ENSCLAG00000015152	ENSCLAG00000018011 #12	ENSCLAG00000013798 #12	ENSCLAG00000018055 #14	ENSCLAG00000015264 #14	ENSCLAG00000017986 #14	ENSCLAG00000018003	KRTAP3-1 (ENSCLAG00000017980) #15	ENSCLAG00000017863 #17	KRT40 (ENSCLAG00000014940) #18	KRT39 (ENSCLAG00000013824) #19	KRT23 (ENSCLAG00000014628) #20	KRT12 (ENSCLAG00000015867) #22	KRT10 (ENSCLAG00000017300) #23	KRT26 (ENSCLAG00000016281) #26	KRT28 (ENSCLAG00000015353) #24	KRT24 (ENSCLAG00000015192) #28	KRT222 (ENSCLAG00000016700) #29	SMARCE1 (ENSCLAG00000015303) #30	CCR7 (ENSCLAG00000016277) #31	TNS4 (ENSCLAG00000013766) #32	IGFBP4 (ENSCLAG00000015611) #33	ENSCLAG00000016494	TOP2A (ENSCLAG00000014772) #34	RARA (ENSCLAG00000016604) #36	CDC6 (ENSCLAG00000015306) #37	WIPF2 (ENSCLAG00000015019)	RAPGEFL1 (ENSCLAG00000013660)
Degu	MODERN SPECIES	97	KRTAP16-1 (ENSODEG00000017880)	ENSODEG00000017810	ENSODEG00000017804	ENSODEG00000017801	ENSODEG00000017790	ENSODEG00000017966	ENSODEG00000017878	ENSODEG00000020458 #12	ENSODEG00000017796 #14	KRTAP3-1 (ENSODEG00000020553) #15	ENSODEG00000020535 #17	ENSODEG00000020505 #17	KRT40 (ENSODEG00000017770) #18	KRT39 (ENSODEG00000017870) #19	KRT23 (ENSODEG00000017766) #20	KRT12 (ENSODEG00000017798) #22	KRT10 (ENSODEG00000018133) #23	KRT28 (ENSODEG00000017869) #24	KRT27 (ENSODEG00000017814) #25	KRT26 (ENSODEG00000017748) #26	KRT25 (ENSODEG00000017866) #27	KRT24 (ENSODEG00000017754) #28	KRT222 (ENSODEG00000017765) #29	ENSODEG00000017812 #30	CCR7 (ENSODEG00000017849) #31	TNS4 (ENSODEG00000017791) #32	IGFBP4 (ENSODEG00000017749) #33	RDM1 (ENSODEG00000017788)	TOP2A (ENSODEG00000018034) #34	GJD3 (ENSODEG00000017680) #35	RARA (ENSODEG00000017623) #36
Guinea pig	MODERN SPECIES	53	ENSCPOG00000039942	ENSCPOG00000031771	ENSCPOG00000040575 #12	ENSCPOG00000037983 #12	ENSCPOG00000030187 #12	ENSCPOG00000034760 #14	ENSCPOG00000031237 #14	ENSCPOG00000038991 #14	ENSCPOG00000009368	KRTAP3-1 (ENSCPOG00000011046) #15	ENSCPOG00000038722 #17	ENSCPOG00000011044 #17	KRT40 (ENSCPOG00000011037) #18	KRT39 (ENSCPOG00000011033) #19	KRT23 (ENSCPOG00000011030) #20	ENSCPOG00000034129 #22	ENSCPOG00000033395 #23	ENSCPOG00000036632 #23	KRT28 (ENSCPOG00000033049) #24	KRT27 (ENSCPOG00000030964) #25	KRT26 (ENSCPOG00000038591) #26	KRT25 (ENSCPOG00000000495) #27	KRT24 (ENSCPOG00000032839) #28	KRT222 (ENSCPOG00000023380) #29	SMARCE1 (ENSCPOG00000000173) #30	CCR7 (ENSCPOG00000031024) #31	TNS4 (ENSCPOG00000010254) #32	IGFBP4 (ENSCPOG00000008055) #33	ENSCPOG00000001495	TOP2A (ENSCPOG00000006799) #34	GJD3 (ENSCPOG00000039750) #35
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000033664	ENSHGLG00000011418	ENSHGLG00000046541	ENSHGLG00000048443	ENSHGLG00000016152	ENSHGLG00000036467	ENSHGLG00000045568 #14	ENSHGLG00000020641	KRTAP3-1 (ENSHGLG00000020885) #15	ENSHGLG00000044225 ##17	ENSHGLG00000049120 #17	ENSHGLG00000032503 #17	KRT40 (ENSHGLG00000014814) #18	KRT39 (ENSHGLG00000009907) #19	KRT23 (ENSHGLG00000012804) #20	KRT12 (ENSHGLG00000014783) #22	KRT10 (ENSHGLG00000010577) #23	KRT28 (ENSHGLG00000012817) #24	KRT26 (ENSHGLG00000018049) #26	KRT25 (ENSHGLG00000016382) #27	KRT24 (ENSHGLG00000016476) #28	KRT222 (ENSHGLG00000014433) #29	SMARCE1 (ENSHGLG00000014523) #30	ENSHGLG00000031415	CCR7 (ENSHGLG00000009998) #31	TNS4 (ENSHGLG00000011575) #32	IGFBP4 (ENSHGLG00000009899) #33	ENSHGLG00000011280	TOP2A (ENSHGLG00000012875) #34	GJD3 (ENSHGLG00000014304) #35	RARA (ENSHGLG00000038969) #36