Mus	ANCESTRAL SPECIES	2	ENSGT00940000159486.f.e.b	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433.fb.b #7	ENSGT00940000155433.fb.a #8	ENSGT00940000160295.ib.a #10	ENSGT00940000160295.ib.b.b.b ##10	ENSGT00940000160295.ib.b.a #12	ENSGT00940000160443 #13	ENSGT00390000001157.A.b #14	ENSGT00390000001157.B #15	ENSGT00390000001157.C #16	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Shrew mouse	MODERN SPECIES	5	MGP_PahariEiJ_G0018261 #7	MGP_PahariEiJ_G0018260 #8	MGP_PahariEiJ_G0018259 #9	Krtap9-3 (MGP_PahariEiJ_G0018258) #10	MGP_PahariEiJ_G0018257 #11	Krtap1-4 (MGP_PahariEiJ_G0018256) #12	Krtap1-5 (MGP_PahariEiJ_G0018255) #13	Krtap3-1 (MGP_PahariEiJ_G0018254) #14	Gm11939 (MGP_PahariEiJ_G0018253) #15	MGP_PahariEiJ_G0018252 #16	MGP_PahariEiJ_G0018251 #17	Krt40 (MGP_PahariEiJ_G0018250) #18	Krt39 (MGP_PahariEiJ_G0018249) #19	Krt23 (MGP_PahariEiJ_G0018248) #20	Krt20 (MGP_PahariEiJ_G0018247) #21	Krt12 (MGP_PahariEiJ_G0018246) #22	Krt10 (MGP_PahariEiJ_G0018245) #23	MGP_PahariEiJ_G0018244 #24	Krt27 (MGP_PahariEiJ_G0018243) #25	Krt26 (MGP_PahariEiJ_G0018242) #26	Krt25 (MGP_PahariEiJ_G0018241) #27	Krt24 (MGP_PahariEiJ_G0018240) #28	Krt222 (MGP_PahariEiJ_G0018239) #29	Smarce1 (MGP_PahariEiJ_G0018238) #30	Ccr7 (MGP_PahariEiJ_G0018237) #31	Tns4 (MGP_PahariEiJ_G0018236) #32	MGP_PahariEiJ_G0018235 #33	Top2a (MGP_PahariEiJ_G0018234) #34	Gjd3 (MGP_PahariEiJ_G0018233) #35	Rara (MGP_PahariEiJ_G0018232) #36	Cdc6 (MGP_PahariEiJ_G0018231) #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000159486.f.e.a.a.a	ENSGT00940000155433.fb.b.a #7	ENSGT00940000155433.fb.a #8	ENSGT00940000155433.fb.b.b #7	ENSGT00940000160295.ib.a #10	ENSGT00940000160295.ib.b.b.b ##10	ENSGT00940000160295.ib.b.a #12	ENSGT00940000160443 #13	ENSGT00390000001157.A.b #14	ENSGT00390000001157.B #15	ENSGT00390000001157.C #16	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000163416	ENSGT00840000130699.b	ENSGT00840000130699.a.b	ENSGT00940000155433.fb.b.b #7	ENSGT00940000160295.ib.a #10	ENSGT00940000160295.ib.b.b.b ##10	ENSGT00940000160295.ib.b.a #12	ENSGT00940000160443 #13	ENSGT00390000001157.A.b #14	ENSGT00390000001157.B #15	ENSGT00390000001157.C #16	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Mouse	MODERN SPECIES	2	Krtap2-4 (ENSMUSG00000060756) #8	Gm11937 (ENSMUSG00000058725) #7	Gm11938 (ENSMUSG00000057674) #7	Krtap9-3 (ENSMUSG00000049809) #10	Krtap1-3 (ENSMUSG00000078131) ##10	Krtap1-4 (ENSMUSG00000075567) #12	Krtap1-5 (ENSMUSG00000047253) #13	Krtap3-1 (ENSMUSG00000047564) #14	Gm11939 (ENSMUSG00000078132) #15	Krtap3-2 (ENSMUSG00000069721) #16	Krtap3-3 (ENSMUSG00000069722) #16	Krt40 (ENSMUSG00000059169) #18	Krt39 (ENSMUSG00000064165) #19	Krt23 (ENSMUSG00000006777) #20	Krt20 (ENSMUSG00000035775) #21	Krt12 (ENSMUSG00000020912) #22	Krt10 (ENSMUSG00000019761) #23	Krt28 (ENSMUSG00000055937) #24	Krt27 (ENSMUSG00000017588) #25	Krt26 (ENSMUSG00000075570) #26	Krt25 (ENSMUSG00000035831) #27	Krt24 (ENSMUSG00000020913) #28	Krt222 (ENSMUSG00000035849) #29	Smarce1 (ENSMUSG00000037935) #30	Ccr7 (ENSMUSG00000037944) #31	Tns4 (ENSMUSG00000017607) #32	Igfbp4 (ENSMUSG00000017493) #33	Top2a (ENSMUSG00000020914) #34	Gjd3 (ENSMUSG00000047197) #35	Rara (ENSMUSG00000037992) #36	Cdc6 (ENSMUSG00000017499) #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000159486.f.f.b.a	ENSGT00940000154448.b.b.a.b.b.a	ENSGT00940000154448.b.b.a.a.b	ENSGT00940000155433.fb.a #8	ENSGT00940000160295.ib.a #10	ENSGT00940000160295.ib.b.b.b ##10	ENSGT00940000160295.ib.b.a #12	ENSGT00940000160443 #13	ENSGT00390000001157.A.b #14	ENSGT00390000001157.B #15	ENSGT00390000001157.C #16	ENSGT00940000161968 #18	ENSGT00940000162203 #19	ENSGT00940000161077 #20	ENSGT00940000161855 #21	ENSGT00940000159382 #22	ENSGT00940000160849 #23	ENSGT00940000162192 #24	ENSGT00940000161982 #25	ENSGT00940000161950 #26	ENSGT00940000161994 #27	ENSGT00940000161783 #28	ENSGT00940000159655 #29	ENSGT00390000003628.b.d #30	ENSGT01030000234667.a.a.a.a.b #31	ENSGT00940000160142 #32	ENSGT00940000159647 #33	ENSGT00940000157539 #34	ENSGT01090000260005.a.b.a.a #35	ENSGT00940000159997 #36	ENSGT00530000063498.A #37
Steppe mouse	MODERN SPECIES	2890	ENSMSIG00000025810	ENSMSIG00000025818	ENSMSIG00000025826	Krtap2-4 (ENSMSIG00000025829) #8	Krtap9-3 (ENSMSIG00000025835) #10	Krtap1-3 (ENSMSIG00000025841) ##10	Krtap1-4 (ENSMSIG00000025846) #12	Krtap1-5 (ENSMSIG00000025851) #13	Krtap3-1 (ENSMSIG00000025854) #14	Gm11939 (ENSMSIG00000025860) #15	ENSMSIG00000025863 #16	Krt40 (ENSMSIG00000025867) #18	Krt39 (ENSMSIG00000025878) #19	Krt23 (ENSMSIG00000025887) #20	Krt20 (ENSMSIG00000025894) #21	Krt12 (ENSMSIG00000025906) #22	Krt10 (ENSMSIG00000025917) #23	Krt28 (ENSMSIG00000025924) #24	Krt27 (ENSMSIG00000025937) #25	Krt26 (ENSMSIG00000025947) #26	Krt25 (ENSMSIG00000025951) #27	Krt24 (ENSMSIG00000025961) #28	Krt222 (ENSMSIG00000025974) #29	ENSMSIG00000025987 #30	ENSMSIG00000026011	Ccr7 (ENSMSIG00000026032) #31	Tns4 (ENSMSIG00000026039) #32	Igfbp4 (ENSMSIG00000026061) #33	Top2a (ENSMSIG00000026083) #34	Gjd3 (ENSMSIG00000026168) #35	Rara (ENSMSIG00000026176) #36
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0017976	MGP_SPRETEiJ_G0017975 #7	MGP_SPRETEiJ_G0017974 ##7	Krtap9-3 (MGP_SPRETEiJ_G0017973) #10	Krtap1-3 (MGP_SPRETEiJ_G0017972) ##10	Krtap1-4 (MGP_SPRETEiJ_G0017971) #12	Krtap1-5 (MGP_SPRETEiJ_G0017970) #13	Krtap3-1 (MGP_SPRETEiJ_G0017969) #14	Gm11939 (MGP_SPRETEiJ_G0017968) #15	MGP_SPRETEiJ_G0017967 ##14	MGP_SPRETEiJ_G0017966 #16	Krt40 (MGP_SPRETEiJ_G0017965) #18	Krt39 (MGP_SPRETEiJ_G0017964) #19	Krt23 (MGP_SPRETEiJ_G0017963) #20	Krt20 (MGP_SPRETEiJ_G0017962) #21	Krt12 (MGP_SPRETEiJ_G0017961) #22	Krt10 (MGP_SPRETEiJ_G0017960) #23	Krt28 (MGP_SPRETEiJ_G0017959) #24	Krt27 (MGP_SPRETEiJ_G0017958) #25	Krt26 (MGP_SPRETEiJ_G0017957) #26	Krt25 (MGP_SPRETEiJ_G0017956) #27	Krt24 (MGP_SPRETEiJ_G0017955) #28	Krt222 (MGP_SPRETEiJ_G0017954) #29	Smarce1 (MGP_SPRETEiJ_G0017953) #30	Ccr7 (MGP_SPRETEiJ_G0017952) #31	Tns4 (MGP_SPRETEiJ_G0017951) #32	Igfbp4 (MGP_SPRETEiJ_G0017950) #33	Top2a (MGP_SPRETEiJ_G0017949) #34	Gjd3 (MGP_SPRETEiJ_G0017948) #35	Rara (MGP_SPRETEiJ_G0017947) #36	Cdc6 (MGP_SPRETEiJ_G0017946) #37
Ryukyu mouse	MODERN SPECIES	2	MGP_CAROLIEiJ_G0017132 #8	MGP_CAROLIEiJ_G0017131 #8	Gm11938 (MGP_CAROLIEiJ_G0017130) #7	Krtap9-3 (MGP_CAROLIEiJ_G0017129) #10	Krtap1-3 (MGP_CAROLIEiJ_G0017128) ##10	Krtap1-4 (MGP_CAROLIEiJ_G0017127) #12	Krtap1-5 (MGP_CAROLIEiJ_G0017126) #13	Krtap3-1 (MGP_CAROLIEiJ_G0017125) #14	Gm11939 (MGP_CAROLIEiJ_G0017124) #15	MGP_CAROLIEiJ_G0017123 #16	MGP_CAROLIEiJ_G0017122 #16	Krt40 (MGP_CAROLIEiJ_G0017121) #18	Krt39 (MGP_CAROLIEiJ_G0017120) #19	Krt23 (MGP_CAROLIEiJ_G0017119) #20	Krt20 (MGP_CAROLIEiJ_G0017118) #21	Krt12 (MGP_CAROLIEiJ_G0017117) #22	Krt10 (MGP_CAROLIEiJ_G0017116) #23	Krt28 (MGP_CAROLIEiJ_G0017115) #24	Krt27 (MGP_CAROLIEiJ_G0017114) #25	Krt26 (MGP_CAROLIEiJ_G0017113) #26	Krt25 (MGP_CAROLIEiJ_G0017112) #27	Krt24 (MGP_CAROLIEiJ_G0017111) #28	Krt222 (MGP_CAROLIEiJ_G0017110) #29	Smarce1 (MGP_CAROLIEiJ_G0017109) #30	Ccr7 (MGP_CAROLIEiJ_G0017108) #31	Tns4 (MGP_CAROLIEiJ_G0017107) #32	Igfbp4 (MGP_CAROLIEiJ_G0017106) #33	Top2a (MGP_CAROLIEiJ_G0017105) #34	Gjd3 (MGP_CAROLIEiJ_G0017104) #35	Rara (MGP_CAROLIEiJ_G0017103) #36	Cdc6 (MGP_CAROLIEiJ_G0017102) #37