Murinae	ANCESTRAL SPECIES	3	ENSGT00940000162351	ENSGT00940000163158.a.a.a.a	ENSGT00940000163158.a.a.a.b	ENSGT00510000050363 #18	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629.b	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001 #19	ENSGT00390000008848 #20	ENSGT00950000183160.A #21	ENSGT00940000159712 #22	ENSGT00940000163088 #24	ENSGT00940000157114 #25	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519 #34	ENSGT00940000158261 #36	ENSGT00990000203615.b.b #37	ENSGT01080000257365.b.a.b.a.b	ENSGT00940000154313.d
Mus	ANCESTRAL SPECIES	4	ENSGT00940000156655	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a.b.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629.b.a	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001 #19	ENSGT00390000008848 #20	ENSGT00950000183160.A #21	ENSGT00940000159712 #22	ENSGT00940000163088 #24	ENSGT00940000157114 #25	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519 #34	ENSGT00940000158261 #36	ENSGT00990000203615.b.b #37	ENSGT01080000257365.b.a.b.a.b	ENSGT00940000154313.d
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000159682	ENSGT00940000162351	ENSGT00940000163158.a.b.b	ENSGT00940000163158.a.a.b	ENSGT00510000050146.B	ENSGT00510000050146.A	ENSGT01100000263629.b.a	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001.a ##19	ENSGT00390000008848 #20	ENSGT00950000183160.A #21	ENSGT00940000159712 #22	ENSGT00940000163088 #24	ENSGT00940000157114 #25	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936 #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519 #34	ENSGT00940000158261 #36	ENSGT00990000203615.b.b #37	ENSGT01080000257365.b.a.b.a.b	ENSGT00940000154313.d
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000163158.a.b.b	ENSGT00940000163158.a.a.b	ENSGT00940000163158.a.a.a.b.b	ENSGT00940000163158.a.a.a.b.a	ENSGT00510000050146.B	ENSGT00510000050146.A.h	ENSGT01100000263629.b.a	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001.a ##19	ENSGT00390000008848 #20	ENSGT00950000183160.A #21	ENSGT00940000159712 #22	ENSGT00940000163088 #24	ENSGT00940000157114 #25	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936.a #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519 #34	ENSGT00940000158261 #36	ENSGT00990000203615.b.b #37	ENSGT01080000257365.b.a.b.a.b	ENSGT00940000154313.d
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000163158.a.b.a	ENSGT00940000163158.a.b.b	ENSGT00940000163158.a.a.b	ENSGT00940000163158.a.a.a.b.b	ENSGT00940000163158.a.a.a.b.a	ENSGT00510000050146.B	ENSGT00510000050146.A.h	ENSGT01100000263629.a	ENSGT00670000099394	ENSGT00390000012586	ENSGT00510000048956	ENSGT00690000102487	ENSGT00550000076001.a ##19	ENSGT00390000008848 #20	ENSGT00950000183160.A #21	ENSGT00940000159712 #22	ENSGT00940000163088 #24	ENSGT00940000157114 #25	ENSGT00940000158436 #26	ENSGT00390000010215.B #27	ENSGT00550000074936.a #28	ENSGT00390000006114 #29	ENSGT00510000048428 #30	ENSGT00390000003924 #31	ENSGT00940000158893 #32	ENSGT00940000157126 #33	ENSGT00940000159519 #34	ENSGT00940000158261 #36	ENSGT00990000203615.b.b #37	ENSGT01080000257365.b.a.b.a.b	ENSGT00940000154313.d
Steppe mouse	MODERN SPECIES	3337												ENSMSIG00000008934 #18	ENSMSIG00000008954 #19	Hyls1 (ENSMSIG00000008977) #20	Pus3 (ENSMSIG00000008983) #21	Ddx25 (ENSMSIG00000009002) #22	ENSMSIG00000009021 #23	Gm1113 (ENSMSIG00000009064) #24	Cdon (ENSMSIG00000009081) #25	Rpusd4 (ENSMSIG00000009157) #26	Fam118b (ENSMSIG00000009187) #27	Srpr (ENSMSIG00000009265) #28	Foxred1 (ENSMSIG00000009311) #29	Tirap (ENSMSIG00000009381) #30	Dcps (ENSMSIG00000009452) #31	St3gal4 (ENSMSIG00000009536) #32	Kirrel3 (ENSMSIG00000009576) #33	Ets1 (ENSMSIG00000009911) #34	ENSMSIG00000010061 #35	ENSMSIG00000010066 #36	Kcnj1 (ENSMSIG00000010090) #37
spretus	MODERN SPECIES	18	Pate8 (MGP_SPRETEiJ_G0033095)	Pate9 (MGP_SPRETEiJ_G0033094)	Pate11 (MGP_SPRETEiJ_G0033093)	MGP_SPRETEiJ_G0033092	MGP_SPRETEiJ_G0033091	Pate6 (MGP_SPRETEiJ_G0033090)	MGP_SPRETEiJ_G0033088	Pate7 (MGP_SPRETEiJ_G0033089)	Pate10 (MGP_SPRETEiJ_G0033087)	Pate1 (MGP_SPRETEiJ_G0033086)	Pate3 (MGP_SPRETEiJ_G0033085)	Pate4 (MGP_SPRETEiJ_G0033084) ##19	Pate2 (MGP_SPRETEiJ_G0033083)	Hyls1 (MGP_SPRETEiJ_G0033082) #20	Pus3 (MGP_SPRETEiJ_G0033081) #21	Ddx25 (MGP_SPRETEiJ_G0033080) #22	Cdon (MGP_SPRETEiJ_G0033079) #25	Rpusd4 (MGP_SPRETEiJ_G0033078) #26	Fam118b (MGP_SPRETEiJ_G0033077) #27	Foxred1 (MGP_SPRETEiJ_G0033076) #29	Srpr (MGP_SPRETEiJ_G0033075) #28	Tirap (MGP_SPRETEiJ_G0033074) #30	Dcps (MGP_SPRETEiJ_G0033073) #31	St3gal4 (MGP_SPRETEiJ_G0033072) #32	Kirrel3 (MGP_SPRETEiJ_G0033071) #33	Ets1 (MGP_SPRETEiJ_G0033070) #34	Fli1 (MGP_SPRETEiJ_G0033069) #36	Kcnj1 (MGP_SPRETEiJ_G0033068) #37	Kcnj5 (MGP_SPRETEiJ_G0033067)	Arhgap32 (MGP_SPRETEiJ_G0033066)	Barx2 (MGP_SPRETEiJ_G0033065)
Mouse	MODERN SPECIES	18	Pate9 (ENSMUSG00000074448)	Pate11 (ENSMUSG00000090710)	Pate12 (ENSMUSG00000023093)	Gm5916 (ENSMUSG00000091411)	Pate13 (ENSMUSG00000078934) #18	Pate5 (ENSMUSG00000047980)	Pate6 (ENSMUSG00000032108)	Pate7 (ENSMUSG00000090738)	Pate10 (ENSMUSG00000091174)	Pate1 (ENSMUSG00000091215)	Pate3 (ENSMUSG00000094995)	Pate4 (ENSMUSG00000032099) ##19	Pate2 (ENSMUSG00000074452)	Hyls1 (ENSMUSG00000050555) #20	Pus3 (ENSMUSG00000032103) #21	Ddx25 (ENSMUSG00000032101) #22	Gm1113 (ENSMUSG00000098590) #24	Cdon (ENSMUSG00000038119) #25	Rpusd4 (ENSMUSG00000032044) #26	Fam118b (ENSMUSG00000050471) #27	Foxred1 (ENSMUSG00000039048) #29	Srpr (ENSMUSG00000032042) #28	Tirap (ENSMUSG00000032041) #30	Dcps (ENSMUSG00000032040) #31	St3gal4 (ENSMUSG00000032038) #32	Kirrel3 (ENSMUSG00000032036) #33	Ets1 (ENSMUSG00000032035) #34	Fli1 (ENSMUSG00000016087) #36	Kcnj1 (ENSMUSG00000041248) #37	Kcnj5 (ENSMUSG00000032034)	Arhgap32 (ENSMUSG00000041444)
Ryukyu mouse	MODERN SPECIES	18	Acrv1 (MGP_CAROLIEiJ_G0031971)	Pate8 (MGP_CAROLIEiJ_G0031970)	MGP_CAROLIEiJ_G0031969	MGP_CAROLIEiJ_G0031968	MGP_CAROLIEiJ_G0031967	Pate6 (MGP_CAROLIEiJ_G0031966)	MGP_CAROLIEiJ_G0031964	Pate7 (MGP_CAROLIEiJ_G0031965)	Pate10 (MGP_CAROLIEiJ_G0031963)	Pate1 (MGP_CAROLIEiJ_G0031962)	Pate3 (MGP_CAROLIEiJ_G0031961)	MGP_CAROLIEiJ_G0031960 ##19	Pate2 (MGP_CAROLIEiJ_G0031959)	Hyls1 (MGP_CAROLIEiJ_G0031958) #20	Pus3 (MGP_CAROLIEiJ_G0031957) #21	Ddx25 (MGP_CAROLIEiJ_G0031956) #22	Cdon (MGP_CAROLIEiJ_G0031955) #25	Rpusd4 (MGP_CAROLIEiJ_G0031954) #26	Fam118b (MGP_CAROLIEiJ_G0031953) #27	Foxred1 (MGP_CAROLIEiJ_G0031952) #29	Srpr (MGP_CAROLIEiJ_G0031951) #28	Tirap (MGP_CAROLIEiJ_G0031950) #30	Dcps (MGP_CAROLIEiJ_G0031949) #31	St3gal4 (MGP_CAROLIEiJ_G0031948) #32	Kirrel3 (MGP_CAROLIEiJ_G0031947) #33	Ets1 (MGP_CAROLIEiJ_G0031946) #34	Fli1 (MGP_CAROLIEiJ_G0031945) #36	Kcnj1 (MGP_CAROLIEiJ_G0031944) #37	Kcnj5 (MGP_CAROLIEiJ_G0031943)	Arhgap32 (MGP_CAROLIEiJ_G0031942)	Barx2 (MGP_CAROLIEiJ_G0031941)
Shrew mouse	MODERN SPECIES	1	Chek1 (MGP_PahariEiJ_G0014836)	Acrv1 (MGP_PahariEiJ_G0014835)	Pate14 (MGP_PahariEiJ_G0014834)	MGP_PahariEiJ_G0014833	MGP_PahariEiJ_G0014832	Pate6 (MGP_PahariEiJ_G0014831)	MGP_PahariEiJ_G0014829	Pate7 (MGP_PahariEiJ_G0014830)	MGP_PahariEiJ_G0014828	Pate1 (MGP_PahariEiJ_G0014827)	MGP_PahariEiJ_G0014826	Pate3 (MGP_PahariEiJ_G0014825)	MGP_PahariEiJ_G0014824 #19	Hyls1 (MGP_PahariEiJ_G0014823) #20	Pus3 (MGP_PahariEiJ_G0014822) #21	Ddx25 (MGP_PahariEiJ_G0014821) #22	Cdon (MGP_PahariEiJ_G0014820) #25	Rpusd4 (MGP_PahariEiJ_G0014819) #26	Fam118b (MGP_PahariEiJ_G0014818) #27	Foxred1 (MGP_PahariEiJ_G0014817) #29	Srpr (MGP_PahariEiJ_G0014816) #28	Tirap (MGP_PahariEiJ_G0014815) #30	Dcps (MGP_PahariEiJ_G0014814) #31	St3gal4 (MGP_PahariEiJ_G0014813) #32	Kirrel3 (MGP_PahariEiJ_G0014812) #33	Ets1 (MGP_PahariEiJ_G0014811) #34	Fli1 (MGP_PahariEiJ_G0014810) #36	Kcnj1 (MGP_PahariEiJ_G0014809) #37	Kcnj5 (MGP_PahariEiJ_G0014808)	Arhgap32 (MGP_PahariEiJ_G0014807)	Barx2 (MGP_PahariEiJ_G0014806)
Rat	MODERN SPECIES	18	LOC100360049 (ENSRNOG00000066595)	Pate14 (ENSRNOG00000066040)	LOC103693040 (ENSRNOG00000030188) #18	Pate-f (ENSRNOG00000049588)	Pate5 (ENSRNOG00000024026)	LOC100361828 (ENSRNOG00000039445)	Pate7 (ENSRNOG00000042925)	LOC100359924 (ENSRNOG00000049218)	Pate1 (ENSRNOG00000049600)	Pate2 (ENSRNOG00000033981)	Pate3 (ENSRNOG00000046243)	Pate4 (ENSRNOG00000070114) #19	Pate4b (ENSRNOG00000065914) #19	Hyls1 (ENSRNOG00000012980) #20	Pus3 (ENSRNOG00000012994) #21	Ddx25 (ENSRNOG00000012260) #22	Vsig10l2 (ENSRNOG00000055680) #24	Cdon (ENSRNOG00000011789) #25	Rpusd4 (ENSRNOG00000011567) #26	Fam118b (ENSRNOG00000011543) #27	Srpra (ENSRNOG00000010543) #28	Foxred1 (ENSRNOG00000060379) #29	Tirap (ENSRNOG00000021420) #30	ENSRNOG00000069075	Dcps (ENSRNOG00000009850) #32	Kirrel3 (ENSRNOG00000009772) #33	Ets1 (ENSRNOG00000008941) #34	Fli1 (ENSRNOG00000008904) #36	Kcnj1 (ENSRNOG00000059005) #37	Kcnj5 (ENSRNOG00000033796)	LOC367050 (ENSRNOG00000027052)