Chordata	ANCESTRAL SPECIES																	ENSGT00940000156788 #22
Vertebrata	ANCESTRAL SPECIES	11															ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000156016	ENSGT00940000154983.c.b
Gnathostomata	ANCESTRAL SPECIES	405														ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b
Euteleostomi	ANCESTRAL SPECIES	50									ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.b.b.b	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379
Sarcopterygii	ANCESTRAL SPECIES	69									ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000168846	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f
Tetrapoda	ANCESTRAL SPECIES	5	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000163878	ENSGT00940000159379	ENSGT00940000153372.A.f
Amniota	ANCESTRAL SPECIES	5	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000168430	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000163878	ENSGT00940000159379
Mammalia	ANCESTRAL SPECIES	20	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000168430	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000163878	ENSGT00940000159379
Theria	ANCESTRAL SPECIES		ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000168430	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00620000087961.b	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000163878	ENSGT00940000159379
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000168430	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Boreoeutheria	ANCESTRAL SPECIES	23	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Euarchontoglires	ANCESTRAL SPECIES	23	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Euarchontoglires_A	ANCESTRAL SPECIES	27	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Glires	ANCESTRAL SPECIES	28	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Rodentia	ANCESTRAL SPECIES	24	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Rodentia_A	ANCESTRAL SPECIES	25	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00390000014526	ENSGT00940000154653	ENSGT00390000015348	ENSGT00940000158582	ENSGT00940000158806	ENSGT00940000159227 #7	ENSGT00940000154101.b #8	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00390000014526	ENSGT00940000154653	ENSGT00390000015348	ENSGT00940000158582	ENSGT00940000158806	ENSGT00940000159227 #7	ENSGT00940000154101.b #8	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29
Hystricomorpha_b	ANCESTRAL SPECIES	105	ENSGT00390000014526	ENSGT00940000154653	ENSGT00390000015348	ENSGT00940000158582	ENSGT00940000158806	ENSGT00940000159227 #7	ENSGT00940000154101.b #8	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29
Degu	MODERN SPECIES	182	ENSODEG00000003690 #7	BAMBI (ENSODEG00000003677) #8	ENSODEG00000003656 #9	ENSODEG00000004040 #10	ENSODEG00000003912 #11	ENSODEG00000003796 #12	PRPF18 (ENSODEG00000003770) #13	FRMD4A (ENSODEG00000003692) #14	ENSODEG00000018940 #15	ENSODEG00000003377 #16	ENSODEG00000003366 #17	ENSODEG00000003359 #18	CDNF (ENSODEG00000003344) #19	MSANTD7 (ENSODEG00000003332) #20	HSPA14 (ENSODEG00000003184) #21	SUV39H2 (ENSODEG00000003137) #22	DCLRE1C (ENSODEG00000002671) #23	ENSODEG00000018818 #24	ENSODEG00000002603 #25	OLAH (ENSODEG00000002589) #26	ACBD7 (ENSODEG00000002582) #27	NMT2 (ENSODEG00000002471) #28	FAM171A1 (ENSODEG00000002332) #29
Long-tailed chinchilla	MODERN SPECIES	136	SVIL (ENSCLAG00000017014)	JCAD (ENSCLAG00000007806)	MTPAP (ENSCLAG00000006536)	MAP3K8 (ENSCLAG00000015841)	ENSCLAG00000015726 #7	BAMBI (ENSCLAG00000013583) #8	ENSCLAG00000014394	SEPHS1 (ENSCLAG00000016058) #11	ENSCLAG00000011064 #12	PRPF18 (ENSCLAG00000011770) #13	ENSCLAG00000009034 #14	ENSCLAG00000007387 #17	CDNF (ENSCLAG00000015411) #19	MSANTD7 (ENSCLAG00000013742) #20	HSPA14 (ENSCLAG00000008946) #21	SUV39H2 (ENSCLAG00000007982) #22	DCLRE1C (ENSCLAG00000012304) #23	MEIG1 (ENSCLAG00000011794)	OLAH (ENSCLAG00000015435) #26	ACBD7 (ENSCLAG00000010962) #27	RPP38 (ENSCLAG00000010194)	NMT2 (ENSCLAG00000008204) #28	FAM171A1 (ENSCLAG00000009809) #29	ENSCLAG00000009091	ENSCLAG00000008194	TEAD4 (ENSCLAG00000012070)	TULP3 (ENSCLAG00000017345)	RHNO1 (ENSCLAG00000017326)	FOXM1 (ENSCLAG00000014183)	TEX52 (ENSCLAG00000013429)	ITFG2 (ENSCLAG00000016639)
Guinea pig	MODERN SPECIES	39	SVIL (ENSCPOG00000013047)	JCAD (ENSCPOG00000005872)	MTPAP (ENSCPOG00000004018)	MAP3K8 (ENSCPOG00000006641)	ENSCPOG00000010457	ENSCPOG00000000268 #7	BAMBI (ENSCPOG00000034429) #8	SEPHS1 (ENSCPOG00000005549) #11	ENSCPOG00000002714 #12	PRPF18 (ENSCPOG00000021069) #13	FRMD4A (ENSCPOG00000001529) #14	ENSCPOG00000032147 #17	CDNF (ENSCPOG00000038576) #19	HSPA14 (ENSCPOG00000008489) #21	MSANTD7 (ENSCPOG00000031225) #20	SUV39H2 (ENSCPOG00000008492) #22	DCLRE1C (ENSCPOG00000002724) #23	MEIG1 (ENSCPOG00000033793)
Naked mole-rat female	MODERN SPECIES	20	JCAD (ENSHGLG00000045602)	MTPAP (ENSHGLG00000016439)	MAP3K8 (ENSHGLG00000016414)	ENSHGLG00000016371 #7	ENSHGLG00000021001	ENSHGLG00000016558	ENSHGLG00000042786 #8	ENSHGLG00000018865 #11	ENSHGLG00000019026 #12	ENSHGLG00000018534 #13	FRMD4A (ENSHGLG00000018604) #14	ENSHGLG00000044105	ENSHGLG00000042298 #17	MSANTD7 (ENSHGLG00000036165) #20	HSPA14 (ENSHGLG00000017522) #21	SUV39H2 (ENSHGLG00000017513) #22	ENSHGLG00000035950 #23
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000156661	ENSGT00940000154209.a.b	ENSGT00940000161899	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000158727	ENSGT00940000157325.w.b	ENSGT00940000156227.f	ENSGT00940000156625	ENSGT00940000156232.b	ENSGT00440000037780.a	ENSGT00940000154101.b #8	ENSGT00940000159227 #7	ENSGT00940000158806	ENSGT00940000158582	ENSGT00390000015348	ENSGT00940000154653
Marmotini	ANCESTRAL SPECIES	21	ENSGT00940000161899	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.t	ENSGT00390000001775.B.s.a	ENSGT00390000001775.B.s.b	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000158727	ENSGT00940000157325.w.b	ENSGT00940000156227.f	ENSGT00940000156625	ENSGT00940000156232.b	ENSGT00440000037780.a	ENSGT00940000154101.b #8	ENSGT00940000159227 #7	ENSGT00940000158806	ENSGT00940000158582	ENSGT00390000015348	ENSGT00940000154653
Marmotini_b	ANCESTRAL SPECIES	15						ENSGT00390000001775.B.s.a	ENSGT00390000001775.B.s.b	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b.a #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000163231 #20	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000158727	ENSGT00940000157325.w.b	ENSGT00940000156227.f	ENSGT00940000156625	ENSGT00940000156232.b	ENSGT00440000037780.a	ENSGT00940000154101.b #8	ENSGT00940000159227 #7	ENSGT00940000158806	ENSGT00940000158582	ENSGT00390000015348	ENSGT00940000154653
Squirrel	MODERN SPECIES	213							ENSSTOG00000011190	SEPHS1 (ENSSTOG00000009989) #11	ENSSTOG00000000214 #12	PRPF18 (ENSSTOG00000008735) #13	FRMD4A (ENSSTOG00000008754) #14	ENSSTOG00000024036 #17	CDNF (ENSSTOG00000014762) #19	HSPA14 (ENSSTOG00000022527) #21	MSANTD7 (ENSSTOG00000021793) #20	SUV39H2 (ENSSTOG00000002220) #22	DCLRE1C (ENSSTOG00000002227) #23	MEIG1 (ENSSTOG00000002244)	ENSSTOG00000012101 #26	ENSSTOG00000015494	PTCHD3 (ENSSTOG00000022182)	ENSSTOG00000014560	MKX (ENSSTOG00000028463)	ODAD2 (ENSSTOG00000006033)	MPP7 (ENSSTOG00000022269)	WAC (ENSSTOG00000013836)	BAMBI (ENSSTOG00000014962) #8	ENSSTOG00000006872 #7	MAP3K8 (ENSSTOG00000006769)	MTPAP (ENSSTOG00000000734)	JCAD (ENSSTOG00000025736)
Alpin marmot	MODERN SPECIES	12	ENSMMMG00000023628	OPTN (ENSMMMG00000023620)	MCM10 (ENSMMMG00000023613)	UCMA (ENSMMMG00000023606)	ENSMMMG00000023601	ENSMMMG00000023600	ENSMMMG00000023597	SEPHS1 (ENSMMMG00000023594) #11	BEND7 (ENSMMMG00000023592)	PRPF18 (ENSMMMG00000023589) #13	FRMD4A (ENSMMMG00000023577) #14	FAM107B (ENSMMMG00000023554) #17	CDNF (ENSMMMG00000023550) #19	MSANTD7 (ENSMMMG00000023548) #20	HSPA14 (ENSMMMG00000023545) #21	SUV39H2 (ENSMMMG00000023544) #22	DCLRE1C (ENSMMMG00000023541) #23	MEIG1 (ENSMMMG00000023532)	OLAH (ENSMMMG00000023525) #26	ENSMMMG00000023523	PTCHD3 (ENSMMMG00000023519)	RAB18 (ENSMMMG00000023516)	MKX (ENSMMMG00000023514)	ODAD2 (ENSMMMG00000023506)	MPP7 (ENSMMMG00000023492)	ENSMMMG00000023487	ENSMMMG00000023421	BAMBI (ENSMMMG00000023420) #8	ENSMMMG00000023412 #7	MAP3K8 (ENSMMMG00000023406)	MTPAP (ENSMMMG00000023380)
Eurasian red squirrel	MODERN SPECIES	3	ENSSVLG00005019155	ENSSVLG00005019101	OPTN (ENSSVLG00005019036)	MCM10 (ENSSVLG00005018843)	UCMA (ENSSVLG00005018738)	PHYH (ENSSVLG00005018627)	SEPHS1 (ENSSVLG00005018549) #11	BEND7 (ENSSVLG00005018514)	ENSSVLG00005018502	PRPF18 (ENSSVLG00005018475) #13	FRMD4A (ENSSVLG00005018214) #14	FAM107B (ENSSVLG00005018083) #17	CDNF (ENSSVLG00005017982) #19	ENSSVLG00005017943 #20	HSPA14 (ENSSVLG00005017800) #21	SUV39H2 (ENSSVLG00005017592) #22	DCLRE1C (ENSSVLG00005017280) #23	MEIG1 (ENSSVLG00005017208)	OLAH (ENSSVLG00005017104) #26	PTCHD3 (ENSSVLG00005016944)	RAB18 (ENSSVLG00005016797)	MKX (ENSSVLG00005016740)	ODAD2 (ENSSVLG00005016451)	ENSSVLG00005016298	WAC (ENSSVLG00005015976)	ENSSVLG00005015928	ENSSVLG00005015917	BAMBI (ENSSVLG00005015877) #8	ENSSVLG00005015824 #7	MAP3K8 (ENSSVLG00005015778)	MTPAP (ENSSVLG00005015727)
Rodentia_B	ANCESTRAL SPECIES	32	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Myomorpha	ANCESTRAL SPECIES	34	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Muroidea	ANCESTRAL SPECIES	35	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	881													Cdnf (ENSNGAG00000007026) #19	Gm45902 (ENSNGAG00000023560) #20	Hspa14 (ENSNGAG00000008769) #21	ENSNGAG00000010697 #22	Dclre1c (ENSNGAG00000016181) #23	Meig1 (ENSNGAG00000011462)	Olah (ENSNGAG00000017961) #26	Acbd7 (ENSNGAG00000011774) #27	Rpp38 (ENSNGAG00000011066)	Nmt2 (ENSNGAG00000015578) #28	ENSNGAG00000017630 #29
Upper Galilee mountains blind mole rat	MODERN SPECIES	1615													Xpa (ENSNGAG00000011559)	ENSNGAG00000017352	ENSNGAG00000013467	ENSNGAG00000017116 #22	ENSNGAG00000019780	Trmo (ENSNGAG00000010340)	ENSNGAG00000012041	ENSNGAG00000014358	Nans (ENSNGAG00000020614)	Trim14 (ENSNGAG00000020700)	Coro2a (ENSNGAG00000000977)	Tbc1d2 (ENSNGAG00000010676)
Muroidea_A	ANCESTRAL SPECIES	14	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Northern American deer mouse	MODERN SPECIES	18	Ccdc3 (ENSPEMG00000010385)	Optn (ENSPEMG00000000071)	Mcm10 (ENSPEMG00000008646)	Ucma (ENSPEMG00000010656)	Phyh (ENSPEMG00000013360)	Sephs1 (ENSPEMG00000014445) #11	ENSPEMG00000007132	ENSPEMG00000002513 #12	Prpf18 (ENSPEMG00000013704) #13	ENSPEMG00000029697	Frmd4a (ENSPEMG00000008028) #14	Fam107b (ENSPEMG00000029727) #17	Cdnf (ENSPEMG00000007242) #19	Gm45902 (ENSPEMG00000031111) #20	Hspa14 (ENSPEMG00000010294) #21	Suv39h2 (ENSPEMG00000017334) #22	Dclre1c (ENSPEMG00000010642) #23	Meig1 (ENSPEMG00000027268)	ENSPEMG00000026010	Olah (ENSPEMG00000015490) #26	Acbd7 (ENSPEMG00000015811) #27	Rpp38 (ENSPEMG00000008375)	Nmt2 (ENSPEMG00000014922) #28	Fam171a1 (ENSPEMG00000011973) #29	Itga8 (ENSPEMG00000015642)	Mindy3 (ENSPEMG00000012561)	Pter (ENSPEMG00000008590)	C1ql3 (ENSPEMG00000024317)	Rsu1 (ENSPEMG00000015677)	Cubn (ENSPEMG00000012926)	Trdmt1 (ENSPEMG00000018297)
Prairie vole	MODERN SPECIES	3	Cdc123 (ENSMOCG00000010761)	Camk1d (ENSMOCG00000002558)	Ccdc3 (ENSMOCG00000021095)	Optn (ENSMOCG00000016560)	Mcm10 (ENSMOCG00000022180)	Ucma (ENSMOCG00000005346)	Phyh (ENSMOCG00000001877)	Sephs1 (ENSMOCG00000022876) #11	ENSMOCG00000022807 #12	Prpf18 (ENSMOCG00000021468) #13	Frmd4a (ENSMOCG00000018621) #14	ENSMOCG00000018519 #17	Cdnf (ENSMOCG00000016251) #19	Gm45902 (ENSMOCG00000002410) #20	Hspa14 (ENSMOCG00000020460) #21	Suv39h2 (ENSMOCG00000011550) #22	Dclre1c (ENSMOCG00000006406) #23	Meig1 (ENSMOCG00000009538)	ENSMOCG00000013927	Mpp7 (ENSMOCG00000009850)	ENSMOCG00000019180	Odad2 (ENSMOCG00000011155)	Mkx (ENSMOCG00000015948)	Rab18 (ENSMOCG00000013044)	ENSMOCG00000022076	ENSMOCG00000012449	Epc1 (ENSMOCG00000000443)	ENSMOCG00000005535	Kif5b (ENSMOCG00000019118)	ENSMOCG00000018138	Arhgap12 (ENSMOCG00000009460)
Cricetinae	ANCESTRAL SPECIES	26	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Chinese hamster chok1gshd	MODERN SPECIES	317	Camk1d (ENSCGRG00001005420)	Ccdc3 (ENSCGRG00001021619)	Optn (ENSCGRG00001014359)	Mcm10 (ENSCGRG00001011187)	Ucma (ENSCGRG00001014571)	Phyh (ENSCGRG00001022685)	Sephs1 (ENSCGRG00001013040) #11	ENSCGRG00001015360 #12	Prpf18 (ENSCGRG00001023665) #13	ENSCGRG00001020329	Frmd4a (ENSCGRG00001021993) #14	ENSCGRG00001016519 #17	Cdnf (ENSCGRG00001012781) #19	Gm45902 (ENSCGRG00001007819) #20	Hspa14 (ENSCGRG00001009113) #21	Suv39h2 (ENSCGRG00001015429) #22	Dclre1c (ENSCGRG00001021478) #23	Meig1 (ENSCGRG00001009415)	Olah (ENSCGRG00001021877) #26	Acbd7 (ENSCGRG00001000337) #27	Rpp38 (ENSCGRG00001001395)	Nmt2 (ENSCGRG00001014438) #28	Fam171a1 (ENSCGRG00001015846) #29	ENSCGRG00001022446	Itga8 (ENSCGRG00001021942)	Mindy3 (ENSCGRG00001008270)	Pter (ENSCGRG00001013707)	C1ql3 (ENSCGRG00001002028)	ENSCGRG00001023344	Rsu1 (ENSCGRG00001000898)	Cubn (ENSCGRG00001019615)
Golden Hamster	MODERN SPECIES	728	Echdc3 (ENSMAUG00000010548)	Proser2 (ENSMAUG00000013393)	Upf2 (ENSMAUG00000016512)	Dhtkd1 (ENSMAUG00000019348)	Nudt5 (ENSMAUG00000020126)	Cdc123 (ENSMAUG00000019286)	Camk1d (ENSMAUG00000003534)	Ccdc3 (ENSMAUG00000002142)	Optn (ENSMAUG00000017518)	Phyh (ENSMAUG00000021652)	Sephs1 (ENSMAUG00000020309) #11	ENSMAUG00000000534 #12	Frmd4a (ENSMAUG00000018829) #14	ENSMAUG00000002214 #17	Cdnf (ENSMAUG00000016629) #19	Suv39h2 (ENSMAUG00000007087) #22	Dclre1c (ENSMAUG00000021563) #23	Olah (ENSMAUG00000020873) #26	Acbd7 (ENSMAUG00000005954) #27	Rpp38 (ENSMAUG00000003644)	Nmt2 (ENSMAUG00000021877) #28	Fam171a1 (ENSMAUG00000008247) #29	Itga8 (ENSMAUG00000016581)	Mindy3 (ENSMAUG00000021174)	Pter (ENSMAUG00000022178)	C1ql3 (ENSMAUG00000007710)	Rsu1 (ENSMAUG00000014980)	Cubn (ENSMAUG00000015453)	Trdmt1 (ENSMAUG00000013279)	Vim (ENSMAUG00000004577)	St8sia6 (ENSMAUG00000008670)
Murinae	ANCESTRAL SPECIES	27	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Mus	ANCESTRAL SPECIES	18	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29
Mus_A	ANCESTRAL SPECIES		ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29
Mus_C	ANCESTRAL SPECIES	30	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29
Steppe mouse	MODERN SPECIES	3048	Ccdc3 (ENSMSIG00000011746)	Optn (ENSMSIG00000011705)	Mcm10 (ENSMSIG00000011666)	Ucma (ENSMSIG00000011593)	ENSMSIG00000011587	Phyh (ENSMSIG00000011573)	Sephs1 (ENSMSIG00000011558) #11	ENSMSIG00000011549 #12	ENSMSIG00000011528	ENSMSIG00000011427 #13	Frmd4a (ENSMSIG00000011066) #14	Fam107b (ENSMSIG00000010928) #17	Cdnf (ENSMSIG00000010908) #19	Gm45902 (ENSMSIG00000010899) #20	Hspa14 (ENSMSIG00000010832) #21	Suv39h2 (ENSMSIG00000010787) #22	Dclre1c (ENSMSIG00000010516) #23	Meig1 (ENSMSIG00000010502)	Olah (ENSMSIG00000010469) #26	ENSMSIG00000010451 #27	Rpp38 (ENSMSIG00000010444)	Nmt2 (ENSMSIG00000010317) #28	Fam171a1 (ENSMSIG00000010142) #29	ENSMSIG00000010127
spretus	MODERN SPECIES	11	Nudt5 (MGP_SPRETEiJ_G0024071)	Cdc123 (MGP_SPRETEiJ_G0024070)	Camk1d (MGP_SPRETEiJ_G0024069)	Ccdc3 (MGP_SPRETEiJ_G0024068)	Optn (MGP_SPRETEiJ_G0024067)	Mcm10 (MGP_SPRETEiJ_G0024066)	Ucma (MGP_SPRETEiJ_G0024065)	Phyh (MGP_SPRETEiJ_G0024064)	Sephs1 (MGP_SPRETEiJ_G0024063) #11	Bend7 (MGP_SPRETEiJ_G0024062)	Prpf18 (MGP_SPRETEiJ_G0024061) #13	Frmd4a (MGP_SPRETEiJ_G0024060) #14	MGP_SPRETEiJ_G0024059 #17	Cdnf (MGP_SPRETEiJ_G0024058) #19	Hspa14 (MGP_SPRETEiJ_G0024057) #21	Suv39h2 (MGP_SPRETEiJ_G0024056) #22	Dclre1c (MGP_SPRETEiJ_G0024055) #23	Meig1 (MGP_SPRETEiJ_G0024054)	Olah (MGP_SPRETEiJ_G0024053) #26	Acbd7 (MGP_SPRETEiJ_G0024052) #27	Rpp38 (MGP_SPRETEiJ_G0024051)	Nmt2 (MGP_SPRETEiJ_G0024050) #28	Fam171a1 (MGP_SPRETEiJ_G0024049) #29
Mouse	MODERN SPECIES	11	Cdc123 (ENSMUSG00000039128)	Camk1d (ENSMUSG00000039145)	Ccdc3 (ENSMUSG00000026676)	Optn (ENSMUSG00000026672)	Mcm10 (ENSMUSG00000026669)	Ucma (ENSMUSG00000026668)	Phyh (ENSMUSG00000026664)	Sephs1 (ENSMUSG00000026662) #11	Bend7 (ENSMUSG00000048186)	Prpf18 (ENSMUSG00000039449) #13	Frmd4a (ENSMUSG00000026657) #14	Fam107b (ENSMUSG00000026655) #17	Cdnf (ENSMUSG00000039496) #19	Gm45902 (ENSMUSG00000051396) #20	Hspa14 (ENSMUSG00000109865) #21	Suv39h2 (ENSMUSG00000026646) #22	Dclre1c (ENSMUSG00000026648) #23	Meig1 (ENSMUSG00000026650)	Olah (ENSMUSG00000026645) #26	Acbd7 (ENSMUSG00000026644) #27	Rpp38 (ENSMUSG00000049950)	Nmt2 (ENSMUSG00000026643) #28	Fam171a1 (ENSMUSG00000050530) #29
Ryukyu mouse	MODERN SPECIES	11	Nudt5 (MGP_CAROLIEiJ_G0023153)	Cdc123 (MGP_CAROLIEiJ_G0023152)	Camk1d (MGP_CAROLIEiJ_G0023151)	Ccdc3 (MGP_CAROLIEiJ_G0023150)	Optn (MGP_CAROLIEiJ_G0023149)	Mcm10 (MGP_CAROLIEiJ_G0023148)	Ucma (MGP_CAROLIEiJ_G0023147)	Phyh (MGP_CAROLIEiJ_G0023146)	Sephs1 (MGP_CAROLIEiJ_G0023145) #11	Bend7 (MGP_CAROLIEiJ_G0023144)	Prpf18 (MGP_CAROLIEiJ_G0023143) #13	Frmd4a (MGP_CAROLIEiJ_G0023142) #14	MGP_CAROLIEiJ_G0023141 #17	Cdnf (MGP_CAROLIEiJ_G0023140) #19	Hspa14 (MGP_CAROLIEiJ_G0023139) #21	Suv39h2 (MGP_CAROLIEiJ_G0023138) #22	Dclre1c (MGP_CAROLIEiJ_G0023137) #23	Meig1 (MGP_CAROLIEiJ_G0023136)	Olah (MGP_CAROLIEiJ_G0023135) #26	Acbd7 (MGP_CAROLIEiJ_G0023134) #27	Rpp38 (MGP_CAROLIEiJ_G0023133)	Nmt2 (MGP_CAROLIEiJ_G0023132) #28	Fam171a1 (MGP_CAROLIEiJ_G0023131) #29
Shrew mouse	MODERN SPECIES	7	Nudt5 (MGP_PahariEiJ_G0019213)	Cdc123 (MGP_PahariEiJ_G0019212)	Camk1d (MGP_PahariEiJ_G0019211)	Ccdc3 (MGP_PahariEiJ_G0019210)	Optn (MGP_PahariEiJ_G0019209)	Mcm10 (MGP_PahariEiJ_G0019208)	Ucma (MGP_PahariEiJ_G0019207)	Phyh (MGP_PahariEiJ_G0019206)	Sephs1 (MGP_PahariEiJ_G0019205) #11	Bend7 (MGP_PahariEiJ_G0019204)	Prpf18 (MGP_PahariEiJ_G0019203) #13	Frmd4a (MGP_PahariEiJ_G0019202) #14	MGP_PahariEiJ_G0019201 #17	Cdnf (MGP_PahariEiJ_G0019200) #19	Hspa14 (MGP_PahariEiJ_G0019199) #21	Suv39h2 (MGP_PahariEiJ_G0019198) #22	Dclre1c (MGP_PahariEiJ_G0019197) #23	Meig1 (MGP_PahariEiJ_G0019196)	Olah (MGP_PahariEiJ_G0019195) #26	Acbd7 (MGP_PahariEiJ_G0019194) #27	Rpp38 (MGP_PahariEiJ_G0019193)	Nmt2 (MGP_PahariEiJ_G0019192) #28	Fam171a1 (MGP_PahariEiJ_G0019191) #29
Rat	MODERN SPECIES	8	ENSRNOG00000066940	Ccdc3 (ENSRNOG00000017933)	Optn (ENSRNOG00000017941)	Mcm10 (ENSRNOG00000017981)	Ucma (ENSRNOG00000017987)	Phyh (ENSRNOG00000018044)	Sephs1 (ENSRNOG00000018125) #11	Bend7 (ENSRNOG00000022712)	Prpf18 (ENSRNOG00000018396) #13	Fbxl14-ps1 (ENSRNOG00000000021)	AABR07028615.1 (ENSRNOG00000018500) #14	Fam107b (ENSRNOG00000014886) #17	Cdnf (ENSRNOG00000026493) #19	LOC102547897 (ENSRNOG00000065772) #20	Hspa14 (ENSRNOG00000015212) #21	Suv39h2 (ENSRNOG00000015585) #22	Dclre1c (ENSRNOG00000015980) #23	Mt1-ps3 (ENSRNOG00000038047)	Meig1 (ENSRNOG00000016283)	Rpl34-ps1 (ENSRNOG00000038045)	Olah (ENSRNOG00000016403) #26	Rpp38 (ENSRNOG00000063181)	Nmt2 (ENSRNOG00000026248) #28	Fam171a1 (ENSRNOG00000016534) #29	Itga8 (ENSRNOG00000016538)	Mindy3 (ENSRNOG00000016955)	LOC108348617 (ENSRNOG00000060417)	Pter (ENSRNOG00000017328)	C1ql3 (ENSRNOG00000017459)	Rsu1 (ENSRNOG00000017595)	Cubn (ENSRNOG00000029047)
Lesser Egyptian jerboa	MODERN SPECIES	91	Ccdc3 (ENSJJAG00000020644)	ENSJJAG00000005756	ENSJJAG00000015907	Optn (ENSJJAG00000018508)	Mcm10 (ENSJJAG00000023058)	Phyh (ENSJJAG00000020687)	Sephs1 (ENSJJAG00000018457) #11	ENSJJAG00000014485	ENSJJAG00000010652 #12	ENSJJAG00000024041 #13	ENSJJAG00000009954 #14	ENSJJAG00000023754 #17	Cdnf (ENSJJAG00000016476) #19	Gm45902 (ENSJJAG00000016486) #20	Hspa14 (ENSJJAG00000017953) #21	Suv39h2 (ENSJJAG00000011844) #22	Dclre1c (ENSJJAG00000000957) #23	Meig1 (ENSJJAG00000007890)	Olah (ENSJJAG00000008098) #26	Rpp38 (ENSJJAG00000007523)	ENSJJAG00000018733 #28	Fam171a1 (ENSJJAG00000012784) #29	Itga8 (ENSJJAG00000016914)	Mindy3 (ENSJJAG00000000194)	Pter (ENSJJAG00000021140)	C1ql3 (ENSJJAG00000018950)	Rsu1 (ENSJJAG00000013269)	Cubn (ENSJJAG00000015990)	Trdmt1 (ENSJJAG00000000541)	Vim (ENSJJAG00000007888)	St8sia6 (ENSJJAG00000016521)
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	545																ENSDORG00000014278 #22	Phka1 (ENSDORG00000013605)	Hdac8 (ENSDORG00000013603)	ENSDORG00000028620	Cited1 (ENSDORG00000025773)	Rps4x (ENSDORG00000008571)	Ercc6l (ENSDORG00000007865)	ENSDORG00000024313	Nhsl2 (ENSDORG00000013046)	Rtl5 (ENSDORG00000024359)
Kangaroo rat	MODERN SPECIES	343	Nudt5 (ENSDORG00000002482)	Cdc123 (ENSDORG00000010544)	Camk1d (ENSDORG00000011314)	Ccdc3 (ENSDORG00000005802)	Optn (ENSDORG00000005803)	Mcm10 (ENSDORG00000006767)	Ucma (ENSDORG00000006769)	Sephs1 (ENSDORG00000014119) #11	ENSDORG00000013433 #12	Prpf18 (ENSDORG00000000858) #13	ENSDORG00000000862 #14	ENSDORG00000008449 #17	Cdnf (ENSDORG00000004463) #19	Gm45902 (ENSDORG00000029121) #20	Hspa14 (ENSDORG00000004465) #21	ENSDORG00000004466 #22	ENSDORG00000004858 #23	Olah (ENSDORG00000023566) #26	Acbd7 (ENSDORG00000004624) #27	Rpp38 (ENSDORG00000009783)	Nmt2 (ENSDORG00000009785) #28	ENSDORG00000005909 #29	Itga8 (ENSDORG00000005910)	ENSDORG00000028964	ENSDORG00000005912	Pter (ENSDORG00000026635)	C1ql3 (ENSDORG00000000067)	Rsu1 (ENSDORG00000000068)	Cubn (ENSDORG00000016262)	Trdmt1 (ENSDORG00000004493)	Vim (ENSDORG00000004494)
Lagomorpha	ANCESTRAL SPECIES	307													ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000163231 #20	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518.a #26
Rabbit	MODERN SPECIES	7	RSU1 (ENSOCUG00000030399)	C1QL3 (ENSOCUG00000001991)	PTER (ENSOCUG00000001985)	ENSOCUG00000038864	MINDY3 (ENSOCUG00000016579)	ITGA8 (ENSOCUG00000014334)	FAM171A1 (ENSOCUG00000006924) #29	NMT2 (ENSOCUG00000017607) #28	ENSOCUG00000034897	ENSOCUG00000022768	ENSOCUG00000032177 #27	ENSOCUG00000022064 #26	CDNF (ENSOCUG00000012871) #19	HSPA14 (ENSOCUG00000012875) #21	MSANTD7 (ENSOCUG00000024088) #20	SUV39H2 (ENSOCUG00000015090) #22	DCLRE1C (ENSOCUG00000010154) #23	MEIG1 (ENSOCUG00000010165)	ENSOCUG00000021476 #26	ENSOCUG00000016466 #27	ENSOCUG00000024367	ENSOCUG00000032837	ENSOCUG00000029073	ITPKB (ENSOCUG00000004970)	ENSOCUG00000030155	ENSOCUG00000038705	ENSOCUG00000032314	LBR (ENSOCUG00000000285)	ENAH (ENSOCUG00000002299)	SRP9 (ENSOCUG00000010791)	EPHX1 (ENSOCUG00000011934)
Pika	MODERN SPECIES	4537											STUM (ENSOPRG00000009399)	ITPKB (ENSOPRG00000009408)	ENSOPRG00000009431	CDNF (ENSOPRG00000009436) #19	HSPA14 (ENSOPRG00000009443) #21	SUV39H2 (ENSOPRG00000009465) #22	DCLRE1C (ENSOPRG00000009475) #23
Tree shrew	MODERN SPECIES	2745													FAM107B (ENSTBEG00000004821) #17	CDNF (ENSTBEG00000005219) #19	HSPA14 (ENSTBEG00000005668) #21	SUV39H2 (ENSTBEG00000006477) #22	DCLRE1C (ENSTBEG00000006858) #23
Primates	ANCESTRAL SPECIES	27	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Haplorrhini	ANCESTRAL SPECIES	32	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Simiiformes	ANCESTRAL SPECIES	29	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Catarrhini	ANCESTRAL SPECIES	26	ENSGT00910000147659	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	29	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000014092.k.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a.c #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.c #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518.g.a #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000014092.k.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a.c #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.c #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518.g.a #26	ENSGT00390000015518.g.b #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A
Vervet Monkey	MODERN SPECIES	28	CCDC3 (ENSCSAG00000013223)	OPTN (ENSCSAG00000013210)	MCM10 (ENSCSAG00000013173)	UCMA (ENSCSAG00000013163)	PHYH (ENSCSAG00000013160)	SEPHS1 (ENSCSAG00000013143) #11	ENSCSAG00000019054	ENSCSAG00000013115 #12	PRPF18 (ENSCSAG00000013109) #13	ENSCSAG00000013104	FRMD4A (ENSCSAG00000013090) #14	ENSCSAG00000013078	ENSCSAG00000013072 #17	CDNF (ENSCSAG00000013067) #19	HSPA14 (ENSCSAG00000013062) #21	SUV39H2 (ENSCSAG00000013054) #22	DCLRE1C (ENSCSAG00000013006) #23	MEIG1 (ENSCSAG00000012937)	OLAH (ENSCSAG00000012929) #26	RPP38 (ENSCSAG00000019055)	NMT2 (ENSCSAG00000012889) #28	FAM171A1 (ENSCSAG00000012873) #29	ITGA8 (ENSCSAG00000012859)	MINDY3 (ENSCSAG00000012834)	PTER (ENSCSAG00000012817)	C1QL3 (ENSCSAG00000012770)	RSU1 (ENSCSAG00000012762)	CUBN (ENSCSAG00000012746)	TRDMT1 (ENSCSAG00000012710)	VIM (ENSCSAG00000012697)	ENSCSAG00000012688
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000014092.k.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a.c #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.c #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518.g.a #26	ENSGT00390000015518.g.b #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A
Macaca	ANCESTRAL SPECIES	11	ENSGT00940000156776	ENSGT00910000147953	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000014092.k.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a.c #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.c #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518.g.a #26	ENSGT00940000161184.m #27	ENSGT00390000015518.g.b #26	ENSGT00940000161184.n #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676
Pig-tailed macaque	MODERN SPECIES	169	ENSMNEG00000009115	CCDC3 (ENSMNEG00000043714)	OPTN (ENSMNEG00000042124)	ENSMNEG00000028929	MCM10 (ENSMNEG00000032426)	UCMA (ENSMNEG00000042078)	ENSMNEG00000031768	PHYH (ENSMNEG00000003535)	SEPHS1 (ENSMNEG00000041342) #11	ENSMNEG00000039551 #12	PRPF18 (ENSMNEG00000024679) #13	FRMD4A (ENSMNEG00000028790) #14	FAM107B (ENSMNEG00000005393) #17	CDNF (ENSMNEG00000035877) #19	HSPA14 (ENSMNEG00000033128) #21	ENSMNEG00000028382 #22	DCLRE1C (ENSMNEG00000030932) #23	MEIG1 (ENSMNEG00000043263)	ENSMNEG00000008722 #26	ENSMNEG00000036060 #27
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT01100000263539.b.a.a.a.b.b.a.b.a.b.b.b	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a.c #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00910000148279	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.c #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518.g.a #26	ENSGT00940000161184.m #27	ENSGT00390000015518.g.b #26	ENSGT00940000161184.n #27	ENSGT01030000240310	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676
Rhesus	MODERN SPECIES	19	ENSMMUG00000064773	CCDC3 (ENSMMUG00000058290)	OPTN (ENSMMUG00000005601)	MCM10 (ENSMMUG00000005602)	UCMA (ENSMMUG00000005603)	ENSMMUG00000062961	PHYH (ENSMMUG00000023798)	SEPHS1 (ENSMMUG00000021233) #11	BEND7 (ENSMMUG00000002081) #12	PRPF18 (ENSMMUG00000015071) #13	FRMD4A (ENSMMUG00000017164) #14	ENSMMUG00000050570	FAM107B (ENSMMUG00000017169) #17	CDNF (ENSMMUG00000017170) #19	HSPA14 (ENSMMUG00000017173) #21	SUV39H2 (ENSMMUG00000017174) #22	DCLRE1C (ENSMMUG00000017176) #23	MEIG1 (ENSMMUG00000061792)	ENSMMUG00000052297 #26	ENSMMUG00000051437	ENSMMUG00000050485 #26	ACBD7 (ENSMMUG00000040456) #27	ENSMMUG00000058773	RPP38 (ENSMMUG00000007679)	NMT2 (ENSMMUG00000007680) #28	ENSMMUG00000062622	FAM171A1 (ENSMMUG00000015286) #29	ITGA8 (ENSMMUG00000011661)	MINDY3 (ENSMMUG00000023766)	ENSMMUG00000050160	PTER (ENSMMUG00000016063)
Crab-eating macaque	MODERN SPECIES	19	MCM10 (ENSMFAG00000031145)	UCMA (ENSMFAG00000043336)	ENSMFAG00000065387	PHYH (ENSMFAG00000042378)	SEPHS1 (ENSMFAG00000001994) #11	ENSMFAG00000002654 #12	PRPF18 (ENSMFAG00000000540) #13	ENSMFAG00000055925	ENSMFAG00000000050 #14	ENSMFAG00000050115	ENSMFAG00000030754	ENSMFAG00000053126	FAM107B (ENSMFAG00000036972) #17	ENSMFAG00000045468 #19	HSPA14 (ENSMFAG00000044126) #21	SUV39H2 (ENSMFAG00000031495) #22	DCLRE1C (ENSMFAG00000000598) #23	MEIG1 (ENSMFAG00000030458)	ENSMFAG00000058997 #26	ENSMFAG00000043001 #27	ENSMFAG00000049102 #26	ENSMFAG00000055041 #27	NMT2 (ENSMFAG00000039555) #28	ENSMFAG00000056567	FAM171A1 (ENSMFAG00000003475) #29	ITGA8 (ENSMFAG00000032706)	MINDY3 (ENSMFAG00000039849)	PTER (ENSMFAG00000045890)	C1QL3 (ENSMFAG00000030290)	RSU1 (ENSMFAG00000031371)	CUBN (ENSMFAG00000030948)
Cercopithecinae_b	ANCESTRAL SPECIES	41	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000014092.k.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a.c #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00910000148405	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.c #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518.g.a #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00910000147477	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Olive baboon	MODERN SPECIES	2	ENSPANG00000044508	CCDC3 (ENSPANG00000046006)	ENSPANG00000046713	MCM10 (ENSPANG00000023347)	UCMA (ENSPANG00000023349)	PHYH (ENSPANG00000023351)	SEPHS1 (ENSPANG00000023352) #11	ENSPANG00000023353 #12	PRPF18 (ENSPANG00000023346) #13	ENSPANG00000023341	FRMD4A (ENSPANG00000023342) #14	ENSPANG00000044010	FAM107B (ENSPANG00000023294) #17	CDNF (ENSPANG00000023295) #19	MSANTD7 (ENSPANG00000023296) #20	SUV39H2 (ENSPANG00000023298) #22	DCLRE1C (ENSPANG00000023291) #23	MEIG1 (ENSPANG00000023279)	OLAH (ENSPANG00000023281) #26	ACBD7 (ENSPANG00000045704) #27	RPP38 (ENSPANG00000050774)	ENSPANG00000043806	NMT2 (ENSPANG00000023274) #28	ENSPANG00000040355	FAM171A1 (ENSPANG00000023183) #29	ITGA8 (ENSPANG00000023187)	ENSPANG00000042984	MINDY3 (ENSPANG00000023144)	ENSPANG00000045077	ENSPANG00000037265	ENSPANG00000037380
Cercopithecinae_d	ANCESTRAL SPECIES	86	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000014092.k.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a.c #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00910000148405	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.c #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518.g.b #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00910000147477	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Sooty mangabey	MODERN SPECIES	625							PHYH (ENSCATG00000036406)	ENSCATG00000038342 #11	ENSCATG00000042392 #12	PRPF18 (ENSCATG00000016633) #13	FRMD4A (ENSCATG00000039217) #14	ENSCATG00000041473	FAM107B (ENSCATG00000028892) #17	CDNF (ENSCATG00000033875) #19	HSPA14 (ENSCATG00000042891) #21	ENSCATG00000033418 #22	DCLRE1C (ENSCATG00000040991) #23	MEIG1 (ENSCATG00000037295)	ENSCATG00000042420 #26	ACBD7 (ENSCATG00000035008) #27	ENSCATG00000034050	NMT2 (ENSCATG00000029611) #28	ENSCATG00000032770	FAM171A1 (ENSCATG00000020762) #29	ITGA8 (ENSCATG00000038895)	MINDY3 (ENSCATG00000038269)	ENSCATG00000016441	PTER (ENSCATG00000033932)	C1QL3 (ENSCATG00000030143)	RSU1 (ENSCATG00000044782)	CUBN (ENSCATG00000044997)
Drill	MODERN SPECIES	1565	OPTN (ENSMLEG00000026081)	ENSMLEG00000037306	MCM10 (ENSMLEG00000037584)	UCMA (ENSMLEG00000034904)	PHYH (ENSMLEG00000032777)	ENSMLEG00000041585 #11	ENSMLEG00000005976	ENSMLEG00000016771 #12	PRPF18 (ENSMLEG00000031715) #13	ENSMLEG00000038593	ENSMLEG00000042543	ENSMLEG00000004764	FAM107B (ENSMLEG00000041121) #17	CDNF (ENSMLEG00000032491) #19	HSPA14 (ENSMLEG00000039837) #21	ENSMLEG00000044215 #22	DCLRE1C (ENSMLEG00000044355) #23	ENSMLEG00000008746 #26	ACBD7 (ENSMLEG00000027471) #27	ENSMLEG00000039491	NMT2 (ENSMLEG00000041367) #28	FAM171A1 (ENSMLEG00000034787) #29	ITGA8 (ENSMLEG00000041517)	MINDY3 (ENSMLEG00000028128)	ENSMLEG00000015909	PTER (ENSMLEG00000040531)	RSU1 (ENSMLEG00000028280)	CUBN (ENSMLEG00000031381)	TRDMT1 (ENSMLEG00000030113)	VIM (ENSMLEG00000037996)	ENSMLEG00000042821
Rhinopithecus	ANCESTRAL SPECIES	242			ENSGT00530000063808.b	ENSGT00390000014092.k.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00950000182895.a.a.a.a.b.k	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a.c #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.c #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518.g.a #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958
Black snub-nosed monkey	MODERN SPECIES	67	OPTN (ENSRBIG00000040193)	MCM10 (ENSRBIG00000040349)	UCMA (ENSRBIG00000040839)	ENSRBIG00000027095	PHYH (ENSRBIG00000037289)	ENSRBIG00000038357 #11	ENSRBIG00000031985 #12	PRPF18 (ENSRBIG00000028028) #13	ENSRBIG00000036340	FRMD4A (ENSRBIG00000039383) #14	ENSRBIG00000034183	ENSRBIG00000034991	FAM107B (ENSRBIG00000032052) #17	CDNF (ENSRBIG00000044339) #19	HSPA14 (ENSRBIG00000019354) #21	ENSRBIG00000039063 #22	DCLRE1C (ENSRBIG00000005533) #23	MEIG1 (ENSRBIG00000044905)	OLAH (ENSRBIG00000039599) #26	ACBD7 (ENSRBIG00000035241) #27	ENSRBIG00000038243	NMT2 (ENSRBIG00000044836) #28	FAM171A1 (ENSRBIG00000039587) #29	ITGA8 (ENSRBIG00000036736)	MINDY3 (ENSRBIG00000036764)	ENSRBIG00000043912	ENSRBIG00000026692	CFP (ENSRBIG00000033991)	TIMP1 (ENSRBIG00000042768)	SYN1 (ENSRBIG00000032928)	ARAF (ENSRBIG00000028193)
Golden snub-nosed monkey	MODERN SPECIES	1256			OPTN (ENSRROG00000042736)	ENSRROG00000002106	MCM10 (ENSRROG00000045757)	UCMA (ENSRROG00000016628)	ENSRROG00000044159	PHYH (ENSRROG00000041595)	ENSRROG00000033681 #11	ENSRROG00000040519 #12	PRPF18 (ENSRROG00000040695) #13	FRMD4A (ENSRROG00000040019) #14	FAM107B (ENSRROG00000037647) #17	CDNF (ENSRROG00000042124) #19	HSPA14 (ENSRROG00000042394) #21	SUV39H2 (ENSRROG00000039345) #22	DCLRE1C (ENSRROG00000008623) #23	MEIG1 (ENSRROG00000038951)	OLAH (ENSRROG00000029983) #26	ACBD7 (ENSRROG00000041805) #27	ENSRROG00000030876
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00390000007992	ENSGT00940000161711	ENSGT00390000002975	ENSGT00940000161151	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00390000002313	ENSGT00390000007547.g.a	ENSGT00940000159532	ENSGT00940000160135	ENSGT00950000182832.C.c.a	ENSGT00390000006413	ENSGT00940000153203.A.b	ENSGT00940000156588	ENSGT00940000156788.d #22	ENSGT00910000147074	ENSGT00510000048998	ENSGT00940000168371	ENSGT00940000162565	ENSGT00940000156114	ENSGT00940000155135	ENSGT00940000158503	ENSGT00940000162575	ENSGT00390000012177	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000163478	ENSGT00940000153094	ENSGT00940000164053.b	ENSGT00940000162421.d
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00390000007992	ENSGT00940000161711	ENSGT00390000002975	ENSGT00940000161151	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00390000002313	ENSGT00390000007547.g.a	ENSGT00940000159532	ENSGT00940000160135	ENSGT00950000182832.C.c.a	ENSGT00390000006413	ENSGT00940000153203.A.b	ENSGT00940000156588	ENSGT00940000156788.d #22	ENSGT00910000147074	ENSGT00510000048998	ENSGT00940000168371	ENSGT00940000162565	ENSGT00940000156114	ENSGT00940000155135	ENSGT00940000158503	ENSGT00940000162575	ENSGT00390000012177	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000163478	ENSGT00940000153094	ENSGT00940000164053.b	ENSGT00940000162421.d
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00390000007992	ENSGT00940000161711	ENSGT00390000002975	ENSGT00940000161151	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00390000002313	ENSGT00390000007547.g.a	ENSGT00940000159532	ENSGT00940000160135	ENSGT00950000182832.C.c.a	ENSGT00390000006413	ENSGT00940000153203.A.b	ENSGT00940000156588	ENSGT00940000156788.d #22	ENSGT00910000147931	ENSGT00910000147074	ENSGT00510000048998	ENSGT00940000168371	ENSGT00940000162565	ENSGT00940000156114	ENSGT00940000155135	ENSGT00940000158503	ENSGT00390000003718.d.re.a.b	ENSGT00940000162575	ENSGT00390000012177	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000163478	ENSGT00940000153094
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00390000007992	ENSGT00940000161711	ENSGT00390000002975	ENSGT00940000161151	ENSGT00940000157929	ENSGT00920000149138	ENSGT00390000016876	ENSGT00390000002313	ENSGT00390000007547.g.a	ENSGT00940000159532	ENSGT00940000160135	ENSGT00950000182832.C.c.a	ENSGT00390000006413	ENSGT00940000153203.A.b	ENSGT00940000156588	ENSGT00940000156788.d #22	ENSGT00910000147931	ENSGT00910000147074	ENSGT00510000048998	ENSGT00940000162565	ENSGT00940000156114	ENSGT00940000155135	ENSGT00940000158503	ENSGT00390000003718.d.re.a.b	ENSGT00940000162575	ENSGT00390000012177	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000163478	ENSGT00940000153094.f	ENSGT00940000154413.b.b.a.b.b
Cercopithecinae_d	ANCESTRAL SPECIES	174														ENSGT00940000153203.A.b	ENSGT00940000156588	ENSGT00940000156788.d #22	ENSGT00910000147931	ENSGT00910000147074	ENSGT00510000048998	ENSGT00940000162565	ENSGT00940000156114	ENSGT00940000155135	ENSGT00940000158503	ENSGT00390000003718.d.re.a.b	ENSGT00940000162575	ENSGT00390000012177	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000163478	ENSGT00940000153094.f	ENSGT00940000154413.b.b.a.b.b
Drill	MODERN SPECIES	296															RMND5A (ENSMLEG00000037318)	ENSMLEG00000031758 #22	ENSMLEG00000030028	CD8A (ENSMLEG00000020650)	ENSMLEG00000037771	SMYD1 (ENSMLEG00000034188)	FABP1 (ENSMLEG00000029302)
Sooty mangabey	MODERN SPECIES	289														RMND5A (ENSCATG00000002310)	CD8A (ENSCATG00000003978)	ENSCATG00000036485 #22	ENSCATG00000034741	ENSCATG00000034755	KRCC1 (ENSCATG00000043332)	SMYD1 (ENSCATG00000020543)	FABP1 (ENSCATG00000035137)	THNSL2 (ENSCATG00000031123)	ENSCATG00000024547	FOXI3 (ENSCATG00000030139)	EIF2AK3 (ENSCATG00000003348)	RPIA (ENSCATG00000032077)	IGKC (ENSCATG00000042749)	IGKV4-1 (ENSCATG00000009930)	ENSCATG00000009395	IGKV5-2 (ENSCATG00000014565)	ENSCATG00000042626
Macaca	ANCESTRAL SPECIES	17	ENSGT00390000007992	ENSGT00940000161711	ENSGT00390000002975	ENSGT00940000161151	ENSGT00940000157929.e	ENSGT00920000149138	ENSGT00390000016876	ENSGT00390000002313.g	ENSGT00390000007547.g.a	ENSGT00940000159532	ENSGT00940000160135	ENSGT00950000182832.C.c.a	ENSGT00390000006413	ENSGT00940000153203.A.b	ENSGT00940000156588	ENSGT00940000156788.d #22	ENSGT00910000147931	ENSGT00510000048998	ENSGT00940000168371	ENSGT00940000162565	ENSGT00940000156114	ENSGT00940000155135	ENSGT00940000158503	ENSGT00940000162575	ENSGT00390000012177	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000163478	ENSGT00940000153094	ENSGT00940000164053.b	ENSGT00940000162421.d
Pig-tailed macaque	MODERN SPECIES	231														RMND5A (ENSMNEG00000044699)	CD8A (ENSMNEG00000028566)	ENSMNEG00000030440 #22	ENSMNEG00000038558	ENSMNEG00000030026	SMYD1 (ENSMNEG00000028081)	FABP1 (ENSMNEG00000028684)	THNSL2 (ENSMNEG00000030318)	FOXI3 (ENSMNEG00000030446)	TEX37 (ENSMNEG00000032333)	EIF2AK3 (ENSMNEG00000033031)	RPIA (ENSMNEG00000002906)	IGKC (ENSMNEG00000037667)	IGKV4-1 (ENSMNEG00000032431)	ENSMNEG00000033552	ENSMNEG00000031271	ENSMNEG00000031971	ENSMNEG00000032317
Rhinopithecus	ANCESTRAL SPECIES	400														ENSGT00940000153203.A.b	ENSGT00940000156588	ENSGT00940000156788.d #22	ENSGT00910000147074	ENSGT00510000048998	ENSGT00940000162565	ENSGT00940000156114	ENSGT00940000155135	ENSGT00940000158503	ENSGT00390000003718.d	ENSGT00940000162575	ENSGT00390000012177	ENSGT00940000158121
Black snub-nosed monkey	MODERN SPECIES	1895														RMND5A (ENSRBIG00000033920)	CD8A (ENSRBIG00000033085)	ENSRBIG00000033236 #22	ENSRBIG00000026468	ENSRBIG00000028013	SMYD1 (ENSRBIG00000040066)	FABP1 (ENSRBIG00000039010)	THNSL2 (ENSRBIG00000040021)	ENSRBIG00000040464	FOXI3 (ENSRBIG00000028300)	TEX37 (ENSRBIG00000034016)	EIF2AK3 (ENSRBIG00000028761)
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00390000014429.b	ENSGT00510000046985.h.a	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Hominidae	ANCESTRAL SPECIES	13	ENSGT00910000147659	ENSGT00390000014429.b	ENSGT00510000046985.h.a	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	28	ENSGT00510000046985.h.a	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a #11	ENSGT00940000163804	ENSGT00390000000950.c.b.c #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526.c	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Gorilla	MODERN SPECIES	1	ENSGGOG00000042816	CCDC3 (ENSGGOG00000015404)	OPTN (ENSGGOG00000014718)	ENSGGOG00000040381	ENSGGOG00000042608	MCM10 (ENSGGOG00000014159)	UCMA (ENSGGOG00000014175)	SEPHS1 (ENSGGOG00000003806) #11	ENSGGOG00000025535	ENSGGOG00000008759 #12	PRPF18 (ENSGGOG00000025188) #13	FRMD4A (ENSGGOG00000014757) #14	FAM107B (ENSGGOG00000027481) #17	CDNF (ENSGGOG00000000864) #19	HSPA14 (ENSGGOG00000004669) #21	SUV39H2 (ENSGGOG00000028243) #22	DCLRE1C (ENSGGOG00000013699) #23	MEIG1 (ENSGGOG00000016943)	ACBD7 (ENSGGOG00000036333) #27	ENSGGOG00000042375	NMT2 (ENSGGOG00000010188) #28	FAM171A1 (ENSGGOG00000005087) #29	ITGA8 (ENSGGOG00000015171)	MINDY3 (ENSGGOG00000010902)	PTER (ENSGGOG00000014659)	RSU1 (ENSGGOG00000028048)	CUBN (ENSGGOG00000008467)	TRDMT1 (ENSGGOG00000026112)	VIM (ENSGGOG00000009576)	ST8SIA6 (ENSGGOG00000008851)	ENSGGOG00000040494
Homo/Pan group	ANCESTRAL SPECIES	28	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526.c	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Human	MODERN SPECIES	1	CDC123 (ENSG00000151465)	CAMK1D (ENSG00000183049)	CCDC3 (ENSG00000151468)	OPTN (ENSG00000123240)	MCM10 (ENSG00000065328)	UCMA (ENSG00000165623)	PHYH (ENSG00000107537)	SEPHS1 (ENSG00000086475) #11	BEND7 (ENSG00000165626)	PRPF18 (ENSG00000165630) #13	FRMD4A (ENSG00000151474) #14	FAM107B (ENSG00000065809) #17	CDNF (ENSG00000185267) #19	MSANTD7 (ENSG00000284024) #20	HSPA14 (ENSG00000187522) #21	SUV39H2 (ENSG00000152455) #22	DCLRE1C (ENSG00000152457) #23	MEIG1 (ENSG00000197889)	OLAH (ENSG00000152463) #26	ACBD7 (ENSG00000176244) #27	RPP38 (ENSG00000152464)	NMT2 (ENSG00000152465) #28	FAM171A1 (ENSG00000148468) #29	ITGA8 (ENSG00000077943)	MINDY3 (ENSG00000148481)	PTER (ENSG00000165983)	C1QL3 (ENSG00000165985)	RSU1 (ENSG00000148484)	CUBN (ENSG00000107611)	TRDMT1 (ENSG00000107614)	VIM (ENSG00000026025)
Pan	ANCESTRAL SPECIES	11	ENSGT00390000014429.b	ENSGT00910000147659	ENSGT00950000183210.d.a.c.b.a.b	ENSGT00510000046985.h.a	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b.d.a #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526.d	ENSGT00390000007526.c	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Chimpanzee	MODERN SPECIES	1	ENSPTRG00000049589	OPTN (ENSPTRG00000002298)	ENSPTRG00000041856	ENSPTRG00000048693	MCM10 (ENSPTRG00000023150)	UCMA (ENSPTRG00000002301)	PHYH (ENSPTRG00000002302)	SEPHS1 (ENSPTRG00000002303) #11	BEND7 (ENSPTRG00000002304) #12	ENSPTRG00000044945	PRPF18 (ENSPTRG00000002306) #13	FRMD4A (ENSPTRG00000002308) #14	FAM107B (ENSPTRG00000002309) #17	CDNF (ENSPTRG00000002310) #19	HSPA14 (ENSPTRG00000002311) #21	SUV39H2 (ENSPTRG00000002313) #22	DCLRE1C (ENSPTRG00000002314) #23	ENSPTRG00000039330	ENSPTRG00000049369	ENSPTRG00000043015	OLAH (ENSPTRG00000002315) #26	ENSPTRG00000044773 #27	RPP38 (ENSPTRG00000002318)	NMT2 (ENSPTRG00000002319) #28	FAM171A1 (ENSPTRG00000002320) #29	ITGA8 (ENSPTRG00000002321)	MINDY3 (ENSPTRG00000002322)	PTER (ENSPTRG00000002323)	C1QL3 (ENSPTRG00000002324)	RSU1 (ENSPTRG00000002325)	CUBN (ENSPTRG00000002326)
Bonobo	MODERN SPECIES	1	OPTN (ENSPPAG00000038517)	ENSPPAG00000043268	ENSPPAG00000027069	MCM10 (ENSPPAG00000028191)	UCMA (ENSPPAG00000029216)	PHYH (ENSPPAG00000042110)	SEPHS1 (ENSPPAG00000039256) #11	ENSPPAG00000038510 #12	PRPF18 (ENSPPAG00000041959) #13	FRMD4A (ENSPPAG00000038126) #14	ENSPPAG00000034588	ENSPPAG00000035652	ENSPPAG00000037904 #17	CDNF (ENSPPAG00000027133) #19	HSPA14 (ENSPPAG00000013447) #21	SUV39H2 (ENSPPAG00000030967) #22	DCLRE1C (ENSPPAG00000042200) #23	OLAH (ENSPPAG00000042386) #26	ACBD7 (ENSPPAG00000032610) #27	RPP38 (ENSPPAG00000041577)	NMT2 (ENSPPAG00000031129) #28	FAM171A1 (ENSPPAG00000042245) #29	ITGA8 (ENSPPAG00000031070)	MINDY3 (ENSPPAG00000042732)	PTER (ENSPPAG00000035853)	ENSPPAG00000041659	RSU1 (ENSPPAG00000000879)	CUBN (ENSPPAG00000032308)	TRDMT1 (ENSPPAG00000033613)	VIM (ENSPPAG00000040061)	ST8SIA6 (ENSPPAG00000012351)
Orangutan	MODERN SPECIES	1	CDC123 (ENSPPYG00000002092)	CAMK1D (ENSPPYG00000002093)	CCDC3 (ENSPPYG00000002094)	OPTN (ENSPPYG00000002095)	ENSPPYG00000032649	MCM10 (ENSPPYG00000002096)	UCMA (ENSPPYG00000002097)	PHYH (ENSPPYG00000002098)	SEPHS1 (ENSPPYG00000002099) #11	ENSPPYG00000002100 #12	PRPF18 (ENSPPYG00000002101) #13	FRMD4A (ENSPPYG00000002102) #14	FAM107B (ENSPPYG00000002103) #17	CDNF (ENSPPYG00000002104) #19	HSPA14 (ENSPPYG00000002105) #21	SUV39H2 (ENSPPYG00000002106) #22	DCLRE1C (ENSPPYG00000002107) #23	MEIG1 (ENSPPYG00000033967)	ENSPPYG00000002110 #26	ACBD7 (ENSPPYG00000002111) #27	RPP38 (ENSPPYG00000002113)	NMT2 (ENSPPYG00000002114) #28	FAM171A1 (ENSPPYG00000002115) #29	ITGA8 (ENSPPYG00000002116)	MINDY3 (ENSPPYG00000002117)	PTER (ENSPPYG00000002118)	C1QL3 (ENSPPYG00000036834)	RSU1 (ENSPPYG00000002120)	CUBN (ENSPPYG00000002121)	TRDMT1 (ENSPPYG00000002122)	VIM (ENSPPYG00000037241)
Gibbon	MODERN SPECIES	24	CCDC3 (ENSNLEG00000027361)	ENSNLEG00000027426	OPTN (ENSNLEG00000012276)	ENSNLEG00000031528	MCM10 (ENSNLEG00000012243)	UCMA (ENSNLEG00000012237)	PHYH (ENSNLEG00000012218)	ENSNLEG00000012205 #11	ENSNLEG00000012199 #12	PRPF18 (ENSNLEG00000012186) #13	FRMD4A (ENSNLEG00000012161) #14	ENSNLEG00000034056	FAM107B (ENSNLEG00000012152) #17	CDNF (ENSNLEG00000012143) #19	HSPA14 (ENSNLEG00000012142) #21	SUV39H2 (ENSNLEG00000012108) #22	DCLRE1C (ENSNLEG00000012091) #23	MEIG1 (ENSNLEG00000030021)	UPF2 (ENSNLEG00000012058)	PROSER2 (ENSNLEG00000030461)	ECHDC3 (ENSNLEG00000012053)	ENSNLEG00000012036	ENSNLEG00000030250	CELF2 (ENSNLEG00000011968)	ENSNLEG00000031122	ENSNLEG00000031280	ENSNLEG00000033398	GATA3 (ENSNLEG00000011952)	ENSNLEG00000011951	ATP5F1C (ENSNLEG00000011917)	KIN (ENSNLEG00000011891)
Platyrrhini	ANCESTRAL SPECIES	39	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00950000183098.b.a.b.ib.a.a.a.b	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Cebidae	ANCESTRAL SPECIES	37	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00950000183098.b.a.b.ib.a.a.a.b	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Cebidae_a	ANCESTRAL SPECIES	45	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00950000183098.b.a.b.ib.a.a.a.b	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Capuchin	MODERN SPECIES	61	ENSCCAG00000030198	CDC123 (ENSCCAG00000023475)	CAMK1D (ENSCCAG00000024535)	CCDC3 (ENSCCAG00000031972)	OPTN (ENSCCAG00000034418)	MCM10 (ENSCCAG00000029355)	UCMA (ENSCCAG00000034691)	ENSCCAG00000032911	ENSCCAG00000022163 #11	ENSCCAG00000035137 #12	PRPF18 (ENSCCAG00000036822) #13	FRMD4A (ENSCCAG00000030323) #14	FAM107B (ENSCCAG00000037109) #17	CDNF (ENSCCAG00000022323) #19	HSPA14 (ENSCCAG00000033935) #21	SUV39H2 (ENSCCAG00000026246) #22	DCLRE1C (ENSCCAG00000035071) #23	MEIG1 (ENSCCAG00000032491)	OLAH (ENSCCAG00000021477) #26	ACBD7 (ENSCCAG00000031763) #27	ENSCCAG00000029257	NMT2 (ENSCCAG00000020818) #28	FAM171A1 (ENSCCAG00000030661) #29	ITGA8 (ENSCCAG00000003904)	MINDY3 (ENSCCAG00000037173)	PTER (ENSCCAG00000036391)	C1QL3 (ENSCCAG00000025228)	ENSCCAG00000029447	CUBN (ENSCCAG00000026962)	TRDMT1 (ENSCCAG00000032009)	VIM (ENSCCAG00000029506)
Bolivian squirrel monkey	MODERN SPECIES	81	ENSSBOG00000004407	CAMK1D (ENSSBOG00000020004)	CCDC3 (ENSSBOG00000001721)	ENSSBOG00000024923	MCM10 (ENSSBOG00000033800)	UCMA (ENSSBOG00000018792)	ENSSBOG00000029744	ENSSBOG00000035122 #11	ENSSBOG00000022196 #12	ENSSBOG00000025304	PRPF18 (ENSSBOG00000034482) #13	FRMD4A (ENSSBOG00000019994) #14	FAM107B (ENSSBOG00000008534) #17	CDNF (ENSSBOG00000010656) #19	HSPA14 (ENSSBOG00000022748) #21	SUV39H2 (ENSSBOG00000036243) #22	DCLRE1C (ENSSBOG00000036109) #23	MEIG1 (ENSSBOG00000024964)	ENSSBOG00000035425 #26	ACBD7 (ENSSBOG00000028344) #27	ENSSBOG00000034155	NMT2 (ENSSBOG00000021937) #28	FAM171A1 (ENSSBOG00000031513) #29	ITGA8 (ENSSBOG00000036127)	MINDY3 (ENSSBOG00000034602)	PTER (ENSSBOG00000025522)	C1QL3 (ENSSBOG00000024279)	RSU1 (ENSSBOG00000024435)	CUBN (ENSSBOG00000018460)	TRDMT1 (ENSSBOG00000030640)	VIM (ENSSBOG00000019956)
Mas night monkey	MODERN SPECIES	846			CCDC3 (ENSANAG00000026262)	OPTN (ENSANAG00000024805)	MCM10 (ENSANAG00000030449)	UCMA (ENSANAG00000025442)	PHYH (ENSANAG00000030695)	ENSANAG00000027837 #11	ENSANAG00000027496 #12	ENSANAG00000019008	PRPF18 (ENSANAG00000037445) #13	FRMD4A (ENSANAG00000024385) #14	ENSANAG00000020860	CDNF (ENSANAG00000024815) #19	HSPA14 (ENSANAG00000025949) #21	SUV39H2 (ENSANAG00000032121) #22	DCLRE1C (ENSANAG00000026594) #23	MEIG1 (ENSANAG00000030719)	ENSANAG00000023428 #26	ACBD7 (ENSANAG00000021413) #27	ENSANAG00000036487	NMT2 (ENSANAG00000035352) #28	FAM171A1 (ENSANAG00000012086) #29	ITGA8 (ENSANAG00000030123)	MINDY3 (ENSANAG00000030099)	PTER (ENSANAG00000020500)	C1QL3 (ENSANAG00000032538)	RSU1 (ENSANAG00000021275)	CUBN (ENSANAG00000032092)	TRDMT1 (ENSANAG00000021798)	VIM (ENSANAG00000034802)
Tarsier	MODERN SPECIES	5710													FAM107B (ENSTSYG00000011585) #17	CDNF (ENSTSYG00000014461) #19	HSPA14 (ENSTSYG00000014478) #21	SUV39H2 (ENSTSYG00000004522) #22	DCLRE1C (ENSTSYG00000004532) #23	MEIG1 (ENSTSYG00000007763)	OLAH (ENSTSYG00000009603) #26	ACBD7 (ENSTSYG00000009614) #27	NMT2 (ENSTSYG00000011361) #28	ENSTSYG00000006597 #29
Strepsirrhini	ANCESTRAL SPECIES	30	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Lemuriformes	ANCESTRAL SPECIES	42	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	17	CDC123 (ENSMICG00000004919)	CAMK1D (ENSMICG00000012043)	CCDC3 (ENSMICG00000027860)	OPTN (ENSMICG00000009520)	ENSMICG00000009532	UCMA (ENSMICG00000044971)	PHYH (ENSMICG00000035907)	SEPHS1 (ENSMICG00000007329) #11	ENSMICG00000042206	ENSMICG00000007334 #12	PRPF18 (ENSMICG00000006572) #13	FRMD4A (ENSMICG00000006587) #14	FAM107B (ENSMICG00000029614) #17	CDNF (ENSMICG00000033317) #19	HSPA14 (ENSMICG00000002793) #21	ENSMICG00000038762 #22	DCLRE1C (ENSMICG00000002808) #23	MEIG1 (ENSMICG00000034359)	OLAH (ENSMICG00000045566) #26	ACBD7 (ENSMICG00000034874) #27	NMT2 (ENSMICG00000002826) #28	FAM171A1 (ENSMICG00000002830) #29	ITGA8 (ENSMICG00000005791)	MINDY3 (ENSMICG00000004501)	PTER (ENSMICG00000011472)	C1QL3 (ENSMICG00000011478)	RSU1 (ENSMICG00000011480)	CUBN (ENSMICG00000011487)	TRDMT1 (ENSMICG00000011567)	VIM (ENSMICG00000011578)	ST8SIA6 (ENSMICG00000046983)
Mouse lemur	MODERN SPECIES	19	KCTD3 (ENSMICG00000033484)	USH2A (ENSMICG00000005002)	ESRRG (ENSMICG00000005051)	GPATCH2 (ENSMICG00000037090)	SPATA17 (ENSMICG00000012115)	RRP15 (ENSMICG00000001591)	TGFB2 (ENSMICG00000001597)	LYPLAL1 (ENSMICG00000041495)	SLC30A10 (ENSMICG00000037352)	EPRS1 (ENSMICG00000038220)	BPNT1 (ENSMICG00000017745)	IARS2 (ENSMICG00000017746)	RAB3GAP2 (ENSMICG00000017747)	MARK1 (ENSMICG00000005893)	C1orf115 (ENSMICG00000038121)	ENSMICG00000002803 #22	QSOX1 (ENSMICG00000017553)	LHX4 (ENSMICG00000017555)	ACBD6 (ENSMICG00000033842)	XPR1 (ENSMICG00000017557)	KIAA1614 (ENSMICG00000017558)	STX6 (ENSMICG00000017559)	MR1 (ENSMICG00000035140)	CACNA1E (ENSMICG00000008818)	GLUL (ENSMICG00000046030)	ENSMICG00000028701	RGSL1 (ENSMICG00000042019)	RNASEL (ENSMICG00000026907)	RGS16 (ENSMICG00000032512)	RGS8 (ENSMICG00000031856)	NPL (ENSMICG00000003951)
Lemuriformes_a	ANCESTRAL SPECIES	49	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Coquerels sifaka	MODERN SPECIES	840	NUDT5 (ENSPCOG00000023623)	CDC123 (ENSPCOG00000027782)	CAMK1D (ENSPCOG00000019579)	CCDC3 (ENSPCOG00000016934)	OPTN (ENSPCOG00000003284)	MCM10 (ENSPCOG00000021410)	UCMA (ENSPCOG00000016477)	PHYH (ENSPCOG00000023021)	SEPHS1 (ENSPCOG00000026089) #11	ENSPCOG00000013659 #12	PRPF18 (ENSPCOG00000013057) #13	FRMD4A (ENSPCOG00000026474) #14	FAM107B (ENSPCOG00000028205) #17	CDNF (ENSPCOG00000021766) #19	HSPA14 (ENSPCOG00000018820) #21	SUV39H2 (ENSPCOG00000010548) #22	DCLRE1C (ENSPCOG00000018238) #23	MEIG1 (ENSPCOG00000016420)	OLAH (ENSPCOG00000013245) #26	ACBD7 (ENSPCOG00000019303) #27	NMT2 (ENSPCOG00000014469) #28	FAM171A1 (ENSPCOG00000019313) #29	ITGA8 (ENSPCOG00000022210)	ENSPCOG00000012996	ENSPCOG00000018719	PTER (ENSPCOG00000028299)	C1QL3 (ENSPCOG00000024503)	RSU1 (ENSPCOG00000024869)	CUBN (ENSPCOG00000027033)	TRDMT1 (ENSPCOG00000003698)	VIM (ENSPCOG00000019761)
Greater bamboo lemur	MODERN SPECIES	2727																SUV39H2 (ENSPSMG00000003205) #22	DCLRE1C (ENSPSMG00000002375) #23
Bushbaby	MODERN SPECIES	134	CDC123 (ENSOGAG00000005820)	CAMK1D (ENSOGAG00000008560)	CCDC3 (ENSOGAG00000024450)	OPTN (ENSOGAG00000000624)	UCMA (ENSOGAG00000027294)	ENSOGAG00000025545	PHYH (ENSOGAG00000007803)	SEPHS1 (ENSOGAG00000007807) #11	BEND7 (ENSOGAG00000010676)	PRPF18 (ENSOGAG00000007294) #13	FRMD4A (ENSOGAG00000007298) #14	FAM107B (ENSOGAG00000004725) #17	CDNF (ENSOGAG00000004727) #19	MSANTD7 (ENSOGAG00000027284) #20	HSPA14 (ENSOGAG00000004728) #21	SUV39H2 (ENSOGAG00000004729) #22	DCLRE1C (ENSOGAG00000004732) #23	MEIG1 (ENSOGAG00000033381)	ENSOGAG00000033527 #26	RPP38 (ENSOGAG00000008059)	NMT2 (ENSOGAG00000008060) #28	FAM171A1 (ENSOGAG00000025442) #29	ITGA8 (ENSOGAG00000008062)	MINDY3 (ENSOGAG00000008064)	PTER (ENSOGAG00000007957)	C1QL3 (ENSOGAG00000027285)	RSU1 (ENSOGAG00000006642)	CUBN (ENSOGAG00000006645)	TRDMT1 (ENSOGAG00000006662)	ENSOGAG00000006667	ST8SIA6 (ENSOGAG00000013539)
Laurasiatheria	ANCESTRAL SPECIES	27	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT01090000260046	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A
Laurasiatheria_a	ANCESTRAL SPECIES	22	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Artiodactyla	ANCESTRAL SPECIES	29		ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Suina	ANCESTRAL SPECIES	44	ENSGT00940000156350	ENSGT00940000157002	ENSGT00550000074836	ENSGT00940000153661.a.a.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676
Pig	MODERN SPECIES	1	ACBD5 (ENSSSCG00000011064)	MASTL (ENSSSCG00000011065)	ENSSSCG00000011068	OPTN (ENSSSCG00000023247)	MCM10 (ENSSSCG00000035059)	UCMA (ENSSSCG00000038864)	PHYH (ENSSSCG00000039244)	SEPHS1 (ENSSSCG00000031659) #11	BEND7 (ENSSSCG00000032984)	PRPF18 (ENSSSCG00000026354) #13	FRMD4A (ENSSSCG00000011056) #14	ENSSSCG00000045051	ENSSSCG00000039658 #19	MSANTD7 (ENSSSCG00000057274) #20	HSPA14 (ENSSSCG00000011051) #21	SUV39H2 (ENSSSCG00000011048) #22	DCLRE1C (ENSSSCG00000011049) #23	MEIG1 (ENSSSCG00000034119)	ENSSSCG00000025759 #26	ACBD7 (ENSSSCG00000038184) #27	RPP38 (ENSSSCG00000027110)	NMT2 (ENSSSCG00000026499) #28	FAM171A1 (ENSSSCG00000011047) #29	ITGA8 (ENSSSCG00000011046)	MINDY3 (ENSSSCG00000011045)	PTER (ENSSSCG00000022953)	C1QL3 (ENSSSCG00000011043)	ENSSSCG00000049099	ENSSSCG00000044626	RSU1 (ENSSSCG00000011042)	ENSSSCG00000061431
Chacoan peccary	MODERN SPECIES	48	MASTL (ENSCWAG00000002823)	YME1L1 (ENSCWAG00000002781)	ENSCWAG00000002741	OPTN (ENSCWAG00000002673)	MCM10 (ENSCWAG00000002570)	UCMA (ENSCWAG00000002531)	PHYH (ENSCWAG00000002511)	SEPHS1 (ENSCWAG00000002484) #11	BEND7 (ENSCWAG00000002446)	PRPF18 (ENSCWAG00000002422) #13	FRMD4A (ENSCWAG00000002339) #14	ENSCWAG00000002298	FAM107B (ENSCWAG00000002277) #17	CDNF (ENSCWAG00000002261) #19	HSPA14 (ENSCWAG00000002214) #21	SUV39H2 (ENSCWAG00000002178) #22	DCLRE1C (ENSCWAG00000002164) #23	MEIG1 (ENSCWAG00000002152)	ACBD7 (ENSCWAG00000002136) #27	RPP38 (ENSCWAG00000002123)	NMT2 (ENSCWAG00000002079) #28	FAM171A1 (ENSCWAG00000002053) #29	ITGA8 (ENSCWAG00000002008)	MINDY3 (ENSCWAG00000001975)	PTER (ENSCWAG00000001945)	C1QL3 (ENSCWAG00000001935)	RSU1 (ENSCWAG00000001926)
Artiodactyla_a	ANCESTRAL SPECIES	31			ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Artiodactyla_b	ANCESTRAL SPECIES	27	ENSGT01090000260098.B	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231.h #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00940000173025.c	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00990000210817	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231.h #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00940000173025.c	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000157951	ENSGT01090000260098.B	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00940000173025.c	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Dolphin	MODERN SPECIES	1124													FAM107B (ENSTTRG00000004386) #17	CDNF (ENSTTRG00000004390) #19	HSPA14 (ENSTTRG00000004396) #21	SUV39H2 (ENSTTRG00000004403) #22	DCLRE1C (ENSTTRG00000004406) #23	MEIG1 (ENSTTRG00000004411)	ENSTTRG00000004413 #26	ACBD7 (ENSTTRG00000004415) #27	RPP38 (ENSTTRG00000004420)	NMT2 (ENSTTRG00000004421) #28	FAM171A1 (ENSTTRG00000004422) #29
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000157951	ENSGT01090000260098.B	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00990000210194	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00940000173025.c	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Monodontidae	ANCESTRAL SPECIES	22	ENSGT00940000157951	ENSGT01090000260098.B	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00990000210194	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00940000173025.c	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Narwhal	MODERN SPECIES	308	GPR158 (ENSMMNG00015013963)	MYO3A (ENSMMNG00015013883)	GAD2 (ENSMMNG00015013825)	OPTN (ENSMMNG00015013794)	MCM10 (ENSMMNG00015013720)	UCMA (ENSMMNG00015013649)	PHYH (ENSMMNG00015013619)	SEPHS1 (ENSMMNG00015013598) #11	ENSMMNG00015013555 #12	ENSMMNG00015013535	PRPF18 (ENSMMNG00015013506) #13	FRMD4A (ENSMMNG00015013466) #14	FAM107B (ENSMMNG00015013446) #17	CDNF (ENSMMNG00015013435) #19	HSPA14 (ENSMMNG00015013408) #21	SUV39H2 (ENSMMNG00015013383) #22	DCLRE1C (ENSMMNG00015013334) #23	ENSMMNG00015013306	RPP38 (ENSMMNG00015013300)	NMT2 (ENSMMNG00015013282) #28	FAM171A1 (ENSMMNG00015013263) #29	ITGA8 (ENSMMNG00015013242)	MINDY3 (ENSMMNG00015013207)	ENSMMNG00015013192	ENSMMNG00015013183	C1QL3 (ENSMMNG00015013175)	RSU1 (ENSMMNG00015013159)	CUBN (ENSMMNG00015013087)	TRDMT1 (ENSMMNG00015013057)	VIM (ENSMMNG00015013035)	ST8SIA6 (ENSMMNG00015013019)
Beluga whale	MODERN SPECIES	22	GJD4 (ENSDLEG00000005805)	FZD8 (ENSDLEG00000005816)	OPTN (ENSDLEG00000005824)	MCM10 (ENSDLEG00000005866)	UCMA (ENSDLEG00000005897)	PHYH (ENSDLEG00000005901)	SEPHS1 (ENSDLEG00000005914) #11	BEND7 (ENSDLEG00000005927) #12	ENSDLEG00000005931	PRPF18 (ENSDLEG00000005937) #13	FRMD4A (ENSDLEG00000005956) #14	ENSDLEG00000005992	ENSDLEG00000003552 #17	CDNF (ENSDLEG00000003562) #19	HSPA14 (ENSDLEG00000003571) #21	SUV39H2 (ENSDLEG00000003598) #22	DCLRE1C (ENSDLEG00000003612) #23	MEIG1 (ENSDLEG00000003622)	ACBD7 (ENSDLEG00000003626) #27	RPP38 (ENSDLEG00000003631)	NMT2 (ENSDLEG00000003636) #28	FAM171A1 (ENSDLEG00000003643) #29	ITGA8 (ENSDLEG00000003684)	MINDY3 (ENSDLEG00000003845)	ENSDLEG00000003856	PTER (ENSDLEG00000003863)	C1QL3 (ENSDLEG00000003873)	RSU1 (ENSDLEG00000003890)	CUBN (ENSDLEG00000004027)	TRDMT1 (ENSDLEG00000004726)	VIM (ENSDLEG00000004737)
Vaquita	MODERN SPECIES	11	ENSPSNG00000006275	GAD2 (ENSPSNG00000006192)	FZD8 (ENSPSNG00000006170)	OPTN (ENSPSNG00000006139)	MCM10 (ENSPSNG00000006091)	UCMA (ENSPSNG00000006044)	PHYH (ENSPSNG00000005995)	SEPHS1 (ENSPSNG00000006584) #11	ENSPSNG00000006529 #12	ENSPSNG00000006514	PRPF18 (ENSPSNG00000006479) #13	FRMD4A (ENSPSNG00000006351) #14	FAM107B (ENSPSNG00000006287) #17	CDNF (ENSPSNG00000006237) #19	HSPA14 (ENSPSNG00000006183) #21	SUV39H2 (ENSPSNG00000006119) #22	DCLRE1C (ENSPSNG00000006062) #23	MEIG1 (ENSPSNG00000006007)	ACBD7 (ENSPSNG00000005978) #27	RPP38 (ENSPSNG00000005956)	NMT2 (ENSPSNG00000005915) #28	FAM171A1 (ENSPSNG00000005876) #29	ITGA8 (ENSPSNG00000005830)	MINDY3 (ENSPSNG00000005759)	ENSPSNG00000005647	ENSPSNG00000005635	PTER (ENSPSNG00000005612)	C1QL3 (ENSPSNG00000005594)	RSU1 (ENSPSNG00000005571)	CUBN (ENSPSNG00000004912)	TRDMT1 (ENSPSNG00000004562)
Sperm whale	MODERN SPECIES	2	GJD4 (ENSPCTG00005011420)	ENSPCTG00005011354	OPTN (ENSPCTG00005011312)	MCM10 (ENSPCTG00005011186)	UCMA (ENSPCTG00005011066)	PHYH (ENSPCTG00005010989)	BEND7 (ENSPCTG00005010939)	ENSPCTG00005010897	PRPF18 (ENSPCTG00005010858) #13	FRMD4A (ENSPCTG00005010361) #14	ENSPCTG00005010275	FAM107B (ENSPCTG00005010187) #17	CDNF (ENSPCTG00005010145) #19	ENSPCTG00005010104 #20	HSPA14 (ENSPCTG00005010039) #21	SUV39H2 (ENSPCTG00005009985) #22	DCLRE1C (ENSPCTG00005009594) #23	MEIG1 (ENSPCTG00005009552)	OLAH (ENSPCTG00005009460) #26	RPP38 (ENSPCTG00005009429)	NMT2 (ENSPCTG00005009303) #28	FAM171A1 (ENSPCTG00005009241) #29	ITGA8 (ENSPCTG00005008616)	ENSPCTG00005008508	MINDY3 (ENSPCTG00005008453)	ENSPCTG00005008430	ENSPCTG00005008421	PTER (ENSPCTG00005008393)	C1QL3 (ENSPCTG00005008375)	RSU1 (ENSPCTG00005008293)	CUBN (ENSPCTG00005008099)
Blue whale	MODERN SPECIES	11	MYO3A (ENSBMSG00010003231)	GAD2 (ENSBMSG00010003210)	FZD8 (ENSBMSG00010003200)	OPTN (ENSBMSG00010003169)	MCM10 (ENSBMSG00010003151)	UCMA (ENSBMSG00010003129)	PHYH (ENSBMSG00010003113)	SEPHS1 (ENSBMSG00010003095) #11	ENSBMSG00010003081 #12	ENSBMSG00010003074	ENSBMSG00010003059 #13	FRMD4A (ENSBMSG00010003035) #14	FAM107B (ENSBMSG00010003019) #17	CDNF (ENSBMSG00010003010) #19	HSPA14 (ENSBMSG00010002992) #21	SUV39H2 (ENSBMSG00010002970) #22	DCLRE1C (ENSBMSG00010002955) #23	MEIG1 (ENSBMSG00010002945)	RPP38 (ENSBMSG00010002938)	NMT2 (ENSBMSG00010002922) #28	FAM171A1 (ENSBMSG00010002911) #29	ITGA8 (ENSBMSG00010002882)	ENSBMSG00010002872	MINDY3 (ENSBMSG00010002834)	ENSBMSG00010002821	PTER (ENSBMSG00010002813)	C1QL3 (ENSBMSG00010002809)	RSU1 (ENSBMSG00010002802)	CUBN (ENSBMSG00010002764)	ENSBMSG00010002741	TRDMT1 (ENSBMSG00010002733)
Pecora	DUPLICATION
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES	9	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.h	ENSGT00390000001775.B.g	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.a.b #22	ENSGT00940000163231 #20	ENSGT00940000156788.a.a #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Percora_a	ANCESTRAL SPECIES	10	ENSGT01090000260098.B	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.h	ENSGT00390000001775.B.g	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.a.b #22	ENSGT00940000163231 #20	ENSGT00940000156788.a.a #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Bovidae	ANCESTRAL SPECIES	10	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.h	ENSGT00390000001775.B.g	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.a.b #22	ENSGT00940000163231 #20	ENSGT00940000156788.a.a #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Caprinae	ANCESTRAL SPECIES	23	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.g	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000163231 #20	ENSGT00940000156788.a.a #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Goat	MODERN SPECIES	4	MYO3A (ENSCHIG00000015900)	GAD2 (ENSCHIG00000021003)	FZD8 (ENSCHIG00000026810)	OPTN (ENSCHIG00000017855)	MCM10 (ENSCHIG00000021952)	UCMA (ENSCHIG00000025422)	PHYH (ENSCHIG00000022569)	SEPHS1 (ENSCHIG00000027098) #11	BEND7 (ENSCHIG00000018500)	PRPF18 (ENSCHIG00000000499) #13	FRMD4A (ENSCHIG00000011717) #14	ENSCHIG00000021073 #17	CDNF (ENSCHIG00000019216) #19	HSPA14 (ENSCHIG00000022952) #21	ENSCHIG00000020944 #20	ENSCHIG00000013453 #22	DCLRE1C (ENSCHIG00000015648) #23	MEIG1 (ENSCHIG00000021538)	ACBD7 (ENSCHIG00000023426) #27	RPP38 (ENSCHIG00000012484)	NMT2 (ENSCHIG00000017557) #28	FAM171A1 (ENSCHIG00000008876) #29	ITGA8 (ENSCHIG00000017512)	MINDY3 (ENSCHIG00000011745)	PTER (ENSCHIG00000002557)	C1QL3 (ENSCHIG00000018119)	RSU1 (ENSCHIG00000015471)	CUBN (ENSCHIG00000019577)	TRDMT1 (ENSCHIG00000017788)	VIM (ENSCHIG00000020459)	ST8SIA6 (ENSCHIG00000026819)
Rambouillet Sheep	MODERN SPECIES	4	ENKUR (ENSOARG00020025225)	THNSL1 (ENSOARG00020025238)	GPR158 (ENSOARG00020025256)	ENSOARG00020025314	MYO3A (ENSOARG00020025333)	GAD2 (ENSOARG00020025435)	FZD8 (ENSOARG00020025454)	OPTN (ENSOARG00020003222)	PHYH (ENSOARG00020003287)	SEPHS1 (ENSOARG00020003364) #11	ENSOARG00020003435 #12	PRPF18 (ENSOARG00020003496) #13	FRMD4A (ENSOARG00020003547) #14	FAM107B (ENSOARG00020003835) #17	HSPA14 (ENSOARG00020003953) #21	SUV39H2 (ENSOARG00020004144) #22	DCLRE1C (ENSOARG00020004240) #23	MEIG1 (ENSOARG00020004468)	ENSOARG00020004485 #26	ACBD7 (ENSOARG00020004504) #27	RPP38 (ENSOARG00020004529)	NMT2 (ENSOARG00020004548) #28	FAM171A1 (ENSOARG00020004655) #29	ENSOARG00020004767	PTER (ENSOARG00020004818)	C1QL3 (ENSOARG00020004850)	RSU1 (ENSOARG00020004875)	CUBN (ENSOARG00020004954)	TRDMT1 (ENSOARG00020005317)	VIM (ENSOARG00020005389)	ST8SIA6 (ENSOARG00020005407)
Yarkand deer	MODERN SPECIES	15	MYO3A (ENSCHYG00000008718)	GAD2 (ENSCHYG00000009336)	GJD4 (ENSCHYG00000009556)	OPTN (ENSCHYG00000009642)	MCM10 (ENSCHYG00000009833)	UCMA (ENSCHYG00000010231)	ENSCHYG00000010318	SEPHS1 (ENSCHYG00000010416) #11	ENSCHYG00000010586 #12	PRPF18 (ENSCHYG00000010780) #13	FRMD4A (ENSCHYG00000011011) #14	FAM107B (ENSCHYG00000012145) #17	ENSCHYG00000012197	CDNF (ENSCHYG00000012221) #19	HSPA14 (ENSCHYG00000012284) #21	ENSCHYG00000012544 #22	DCLRE1C (ENSCHYG00000012625) #23	ENSCHYG00000013076 #26	ENSCHYG00000013136	RPP38 (ENSCHYG00000013171)	NMT2 (ENSCHYG00000013207) #28	FAM171A1 (ENSCHYG00000013348) #29	ITGA8 (ENSCHYG00000013486)	ENSCHYG00000013633	PTER (ENSCHYG00000013731)	C1QL3 (ENSCHYG00000013834)	RSU1 (ENSCHYG00000013881)	CUBN (ENSCHYG00000014261)	ENSCHYG00000016940	ENSCHYG00000016959	ENSCHYG00000016991
Pecora	ANCESTRAL SPECIES	9	ENSGT00940000157951	ENSGT01090000260098.B	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.h	ENSGT00390000001775.B.g	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.a.b #22	ENSGT00940000163231 #20	ENSGT00940000156788.a.a #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676
Percora_a	ANCESTRAL SPECIES	10	ENSGT00940000157951	ENSGT00940000161191.A	ENSGT01090000260098.B	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.h	ENSGT00390000001775.B.g	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.a.b #22	ENSGT00940000163231 #20	ENSGT00940000156788.a.a #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676
Bovidae	ANCESTRAL SPECIES	10	ENSGT00940000157951	ENSGT01090000260098.B	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.h	ENSGT00390000001775.B.g	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.a.b #22	ENSGT00940000163231 #20	ENSGT00940000156788.a.a #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676
Bovinae	ANCESTRAL SPECIES	20	ENSGT00940000157951	ENSGT01090000260098.B	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.h	ENSGT00390000001775.B.g	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.a.b #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Bos	ANCESTRAL SPECIES	22	ENSGT00940000157951	ENSGT01090000260098.B	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.h	ENSGT00390000001775.B.g	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.a.b #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000157951	ENSGT01090000260098.B	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.h	ENSGT00390000001775.B.g	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.a.b #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00910000147477	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416
Hybrid Bos Indicus	MODERN SPECIES	4	GAD2 (ENSBIXG00005004092)	FZD8 (ENSBIXG00005005561)	ENSBIXG00005023947	OPTN (ENSBIXG00005024077)	MCM10 (ENSBIXG00005007178)	UCMA (ENSBIXG00005024295)	ENSBIXG00005024330	ENSBIXG00005024364	SEPHS1 (ENSBIXG00005024439) #11	ENSBIXG00005024493 #12	PRPF18 (ENSBIXG00005024561) #13	FRMD4A (ENSBIXG00005004272) #14	FAM107B (ENSBIXG00005004301) #17	CDNF (ENSBIXG00005025344) #19	HSPA14 (ENSBIXG00005005890) #21	SUV39H2 (ENSBIXG00005025582) #22	DCLRE1C (ENSBIXG00005025769) #23	MEIG1 (ENSBIXG00005004408)	OLAH (ENSBIXG00005025877) #26	ACBD7 (ENSBIXG00005025917) #27	RPP38 (ENSBIXG00005006695)	NMT2 (ENSBIXG00005025974) #28	FAM171A1 (ENSBIXG00005007634) #29	ITGA8 (ENSBIXG00005026053)	MINDY3 (ENSBIXG00005004454)	ENSBIXG00005026124	ENSBIXG00005026133	PTER (ENSBIXG00005026166)	C1QL3 (ENSBIXG00005026191)	RSU1 (ENSBIXG00005026245)	CUBN (ENSBIXG00005026292)
Cow	MODERN SPECIES	4	GAD2 (ENSBTAG00000008056)	GJD4 (ENSBTAG00000003640)	FZD8 (ENSBTAG00000052989)	OPTN (ENSBTAG00000016401)	MCM10 (ENSBTAG00000016406)	UCMA (ENSBTAG00000054631)	ENSBTAG00000047869	PHYH (ENSBTAG00000007700)	SEPHS1 (ENSBTAG00000008821) #11	BEND7 (ENSBTAG00000020800) #12	PRPF18 (ENSBTAG00000017244) #13	FRMD4A (ENSBTAG00000008279) #14	FAM107B (ENSBTAG00000010023) #17	CDNF (ENSBTAG00000016450) #19	HSPA14 (ENSBTAG00000016451) #21	SUV39H2 (ENSBTAG00000010210) #22	DCLRE1C (ENSBTAG00000010220) #23	MEIG1 (ENSBTAG00000002856)	OLAH (ENSBTAG00000047454) #26	ACBD7 (ENSBTAG00000002858) #27	RPP38 (ENSBTAG00000007702)	NMT2 (ENSBTAG00000007703) #28	FAM171A1 (ENSBTAG00000008787) #29	ITGA8 (ENSBTAG00000007602)	MINDY3 (ENSBTAG00000010387)	PTER (ENSBTAG00000016676)	ENSBTAG00000048616	C1QL3 (ENSBTAG00000016677)	RSU1 (ENSBTAG00000027446)	CUBN (ENSBTAG00000005072)	TRDMT1 (ENSBTAG00000020546)
Bos_a	ANCESTRAL SPECIES	71	ENSGT00940000162225	ENSGT00940000161144	ENSGT00940000153866.A	ENSGT00940000155918.g	ENSGT00940000157951	ENSGT01090000260098.B	ENSGT00940000161191.A	ENSGT00390000001775.B.g	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788.a.b #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00960000189936	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146	ENSGT01030000234535.B	ENSGT00530000062962.a.b
Wild yak	MODERN SPECIES	682								ENSBMUG00000022643	SEPHS1 (ENSBMUG00000022661) #11	ENSBMUG00000022681 #12	PRPF18 (ENSBMUG00000022684) #13	FRMD4A (ENSBMUG00000022698) #14	FAM107B (ENSBMUG00000022729) #17	CDNF (ENSBMUG00000022755) #19	HSPA14 (ENSBMUG00000022767) #21	SUV39H2 (ENSBMUG00000022782) #22	DCLRE1C (ENSBMUG00000022808) #23
American bison	MODERN SPECIES	3321	ENSBBBG00000014091	GAD2 (ENSBBBG00000014080)	ENSBBBG00000003133	OPTN (ENSBBBG00000014045)	MCM10 (ENSBBBG00000003086)	UCMA (ENSBBBG00000008745)	ENSBBBG00000013955	ENSBBBG00000003045	SEPHS1 (ENSBBBG00000013939) #11	ENSBBBG00000003021 #12	PRPF18 (ENSBBBG00000013908) #13	FRMD4A (ENSBBBG00000013895) #14	FAM107B (ENSBBBG00000013875) #17	CDNF (ENSBBBG00000013850) #19	HSPA14 (ENSBBBG00000002971) #21	SUV39H2 (ENSBBBG00000013820) #22	DCLRE1C (ENSBBBG00000002956) #23	MEIG1 (ENSBBBG00000013734)	ENSBBBG00000002919 #26	ACBD7 (ENSBBBG00000002916) #27	RPP38 (ENSBBBG00000002914)	NMT2 (ENSBBBG00000002912) #28	FAM171A1 (ENSBBBG00000001531) #29	ITGA8 (ENSBBBG00000013651)	MINDY3 (ENSBBBG00000013617)	PTER (ENSBBBG00000007598)	ENSBBBG00000002823	C1QL3 (ENSBBBG00000013594)	RSU1 (ENSBBBG00000013588)	CUBN (ENSBBBG00000013554)	TRDMT1 (ENSBBBG00000001568)
Caprinae	ANCESTRAL SPECIES																	ENSGT00940000156788.a.b #22
Goat	MODERN SPECIES		ERICH6 (ENSCHIG00000026779)	SIAH2 (ENSCHIG00000015530)	CLRN1 (ENSCHIG00000010327)	GPR171 (ENSCHIG00000008552)	P2RY14 (ENSCHIG00000007322)	GPR87 (ENSCHIG00000026625)	P2RY13 (ENSCHIG00000008059)	P2RY12 (ENSCHIG00000021785)	MED12L (ENSCHIG00000014066)	IGSF10 (ENSCHIG00000025273)	ENSCHIG00000010504	AADACL2 (ENSCHIG00000025374)	ENSCHIG00000013704	ENSCHIG00000020191	SUCNR1 (ENSCHIG00000008127)	ENSCHIG00000024419 #22	MBNL1 (ENSCHIG00000019308)	ENSCHIG00000019221	P2RY1 (ENSCHIG00000008918)	RAP2B (ENSCHIG00000011695)	ENSCHIG00000025851	ARHGEF26 (ENSCHIG00000012613)	DHX36 (ENSCHIG00000017463)	GPR149 (ENSCHIG00000005003)	ENSCHIG00000017243	MME (ENSCHIG00000018324)	PLCH1 (ENSCHIG00000024716)	ENSCHIG00000011194	C3orf33 (ENSCHIG00000025795)	SLC33A1 (ENSCHIG00000013645)	GMPS (ENSCHIG00000022844)
Yarkand deer	MODERN SPECIES	26	ENSCHYG00000023539	PLEKHA3 (ENSCHYG00000023579)	FKBP7 (ENSCHYG00000023614)	PJVK (ENSCHYG00000023643)	PRKRA (ENSCHYG00000023726)	OSBPL6 (ENSCHYG00000023926)	RBM45 (ENSCHYG00000024364)	ENSCHYG00000024431	ENSCHYG00000024445	PDE11A (ENSCHYG00000024466)	ENSCHYG00000024550	ENSCHYG00000024559	AGPS (ENSCHYG00000024578)	NFE2L2 (ENSCHYG00000024719)	ENSCHYG00000015038	ENSCHYG00000015305 #22	MTX2 (ENSCHYG00000015392)	HOXD1 (ENSCHYG00000015562)	HOXD3 (ENSCHYG00000015650)	HOXD4 (ENSCHYG00000015683)	HOXD8 (ENSCHYG00000015741)	HOXD9 (ENSCHYG00000015808)	HOXD10 (ENSCHYG00000015831)	ENSCHYG00000015846	HOXD12 (ENSCHYG00000015954)	HOXD13 (ENSCHYG00000015985)	LNPK (ENSCHYG00000016125)	ENSCHYG00000016391	ENSCHYG00000016417	ATP5MC3 (ENSCHYG00000016464)	ATF2 (ENSCHYG00000016575)
Pecora	ANCESTRAL SPECIES																	ENSGT00940000156788.b #22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000156788.b #22
Siberian musk deer	MODERN SPECIES	1194	ENSMMSG00000008510	GAD2 (ENSMMSG00000008371)	FZD8 (ENSMMSG00000008339)	OPTN (ENSMMSG00000008278)	MCM10 (ENSMMSG00000008245)	UCMA (ENSMMSG00000008183)	PHYH (ENSMMSG00000008109)	SEPHS1 (ENSMMSG00000008019) #11	ENSMMSG00000007973 #12	PRPF18 (ENSMMSG00000007919) #13	FRMD4A (ENSMMSG00000007794) #14	ENSMMSG00000007764	FAM107B (ENSMMSG00000007738) #17	CDNF (ENSMMSG00000007698) #19	HSPA14 (ENSMMSG00000007632) #21	SUV39H2 (ENSMMSG00000007587) #22	DCLRE1C (ENSMMSG00000007473) #23	MEIG1 (ENSMMSG00000007439)	ENSMMSG00000007424 #26	ACBD7 (ENSMMSG00000007400) #27	NMT2 (ENSMMSG00000007360) #28	FAM171A1 (ENSMMSG00000007325) #29	ITGA8 (ENSMMSG00000007092)	MINDY3 (ENSMMSG00000006916)	PTER (ENSMMSG00000006831)	C1QL3 (ENSMMSG00000006808)	RSU1 (ENSMMSG00000006752)	CUBN (ENSMMSG00000005129)	TRDMT1 (ENSMMSG00000004916)	ENSMMSG00000004895	VIM (ENSMMSG00000004853)
Camelidae	ANCESTRAL SPECIES	111							ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29
Arabian camel	MODERN SPECIES	28	UCMA (ENSCDRG00005019510)	PHYH (ENSCDRG00005019558)	SEPHS1 (ENSCDRG00005019598) #11	ENSCDRG00005019629 #12	PRPF18 (ENSCDRG00005019643) #13	RAB18 (ENSCDRG00005019789)	ENSCDRG00005019820	ODAD2 (ENSCDRG00005019858)	ENSCDRG00005019992	MPP7 (ENSCDRG00005020016)	ENSCDRG00005020051	ENSCDRG00005020070	FAM107B (ENSCDRG00005020088) #17	CDNF (ENSCDRG00005020103) #19	HSPA14 (ENSCDRG00005020133) #21	SUV39H2 (ENSCDRG00005020162) #22	DCLRE1C (ENSCDRG00005020189) #23	MEIG1 (ENSCDRG00005020218)	ACBD7 (ENSCDRG00005020224) #27	ENSCDRG00005020231	NMT2 (ENSCDRG00005020240) #28	FAM171A1 (ENSCDRG00005020256) #29	ENSCDRG00005020290 #7	ENSCDRG00005020298	BAMBI (ENSCDRG00005020307) #8	WAC (ENSCDRG00005020322)	ITGA8 (ENSCDRG00005020385)	ENSCDRG00005020409	MINDY3 (ENSCDRG00005020416)	ENSCDRG00005020424	ENSCDRG00005020439
Alpaca	MODERN SPECIES	1346													ENSVPAG00000008592	CDNF (ENSVPAG00000008595) #19	HSPA14 (ENSVPAG00000008597) #21	SUV39H2 (ENSVPAG00000008598) #22	ENSVPAG00000008601 #23	ENSVPAG00000008603
Laurasiatheria_b	ANCESTRAL SPECIES	22	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Carnivora	ANCESTRAL SPECIES	26	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146	ENSGT01030000234535.B
Caniformia	ANCESTRAL SPECIES	30	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146	ENSGT01030000234535.B
Canidae	ANCESTRAL SPECIES	29	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.m.b	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000010799.u.b.a.a.b	ENSGT01050000244818.t.c.a.b.a.b.a.b	ENSGT01090000260046.e.b	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A
Canis_lupus	ANCESTRAL SPECIES	6	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.m.b	ENSGT00390000000950.c.b.m #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT01090000260046.e.b.b.a.b.a.a.b.b.a.a.b	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00390000018086.z.j.b.b	ENSGT00940000155299.A	ENSGT00390000012652.bb
Dingo	MODERN SPECIES	98	OPTN (ENSCAFG00020007430)	MCM10 (ENSCAFG00020007556)	UCMA (ENSCAFG00020007582)	ENSCAFG00020007605	ENSCAFG00020007612	ENSCAFG00020007623	ENSCAFG00020007631 #11	ENSCAFG00020007661 #12	PRPF18 (ENSCAFG00020007712) #13	FRMD4A (ENSCAFG00020007759) #14	ENSCAFG00020007934	ENSCAFG00020007935 #17	CDNF (ENSCAFG00020007948) #19	HSPA14 (ENSCAFG00020007951) #21	MSANTD7 (ENSCAFG00020007966) #20	SUV39H2 (ENSCAFG00020007970) #22	DCLRE1C (ENSCAFG00020007987) #23	MEIG1 (ENSCAFG00020007991)	ACBD7 (ENSCAFG00020007996) #27	RPP38 (ENSCAFG00020008008)	NMT2 (ENSCAFG00020008012) #28	FAM171A1 (ENSCAFG00020008035) #29	ITGA8 (ENSCAFG00020008104)	MINDY3 (ENSCAFG00020008196)	ENSCAFG00020008322	PTER (ENSCAFG00020008331)	C1QL3 (ENSCAFG00020008337)	RSU1 (ENSCAFG00020008354)	ENSCAFG00020008395	CUBN (ENSCAFG00020008405)	ENSCAFG00020008447
Dog	MODERN SPECIES	11	CDC123 (ENSCAFG00845000210)	CAMK1D (ENSCAFG00845000194)	CCDC3 (ENSCAFG00845000166)	OPTN (ENSCAFG00845000154)	UCMA (ENSCAFG00845017668)	PHYH (ENSCAFG00845017191)	SEPHS1 (ENSCAFG00845016701) #11	ENSCAFG00845016449 #12	PRPF18 (ENSCAFG00845016307) #13	FRMD4A (ENSCAFG00845015450) #14	FAM107B (ENSCAFG00845015203) #17	ENSCAFG00845015048	CDNF (ENSCAFG00845015027) #19	HSPA14 (ENSCAFG00845015003) #20	HSPA14 (ENSCAFG00845014980) #21	SUV39H2 (ENSCAFG00845014927) #22	DCLRE1C (ENSCAFG00845014762) #23	MEIG1 (ENSCAFG00845014698)	ACBD7 (ENSCAFG00845014667) #27	RPP38 (ENSCAFG00845014645)	NMT2 (ENSCAFG00845014591) #28	FAM171A1 (ENSCAFG00845014555) #29	ITGA8 (ENSCAFG00845014426)	MINDY3 (ENSCAFG00845014335)	PTER (ENSCAFG00845014206)	C1QL3 (ENSCAFG00845014169)	ENSCAFG00845014156	RSU1 (ENSCAFG00845014116)	CUBN (ENSCAFG00845014048)	ENSCAFG00845014012	TRDMT1 (ENSCAFG00845013955)
Red fox	MODERN SPECIES	4	CCDC3 (ENSVVUG00000005918)	OPTN (ENSVVUG00000005909)	UCMA (ENSVVUG00000005891)	ENSVVUG00000005613	ENSVVUG00000005590	SEPHS1 (ENSVVUG00000005564) #11	MCM10 (ENSVVUG00000005499)	ENSVVUG00000005487 #12	PRPF18 (ENSVVUG00000005453) #13	FRMD4A (ENSVVUG00000005390) #14	FAM107B (ENSVVUG00000005338) #17	ENSVVUG00000005333	CDNF (ENSVVUG00000005329) #19	MSANTD7 (ENSVVUG00000005324) #20	HSPA14 (ENSVVUG00000005322) #21	SUV39H2 (ENSVVUG00000005305) #22	DCLRE1C (ENSVVUG00000005293) #23	MEIG1 (ENSVVUG00000005284)	ACBD7 (ENSVVUG00000005276) #27	RPP38 (ENSVVUG00000005272)	NMT2 (ENSVVUG00000005248) #28	FAM171A1 (ENSVVUG00000005186) #29	ITGA8 (ENSVVUG00000005073)	MINDY3 (ENSVVUG00000005044)	PTER (ENSVVUG00000005003)	C1QL3 (ENSVVUG00000004998)	ENSVVUG00000004992	RSU1 (ENSVVUG00000004989)	ENSVVUG00000004982	CUBN (ENSVVUG00000004372)	ENSVVUG00000004313
Caniformia_b	ANCESTRAL SPECIES	33	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146	ENSGT01030000234535.B
Ursidae	ANCESTRAL SPECIES	46	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550.a	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146	ENSGT01030000234535.B
Ursus	ANCESTRAL SPECIES	132							ENSGT00390000001775.B.i	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550.a	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146	ENSGT01030000234535.B
American black bear	MODERN SPECIES	886													CDNF (ENSUAMG00000003687) #19	MSANTD7 (ENSUAMG00000003686) #20	HSPA14 (ENSUAMG00000002856) #21	SUV39H2 (ENSUAMG00000002791) #22
Polar bear	MODERN SPECIES	175								PHYH (ENSUMAG00000012294)	SEPHS1 (ENSUMAG00000012298) #11	ENSUMAG00000012308 #12	PRPF18 (ENSUMAG00000012329) #13	FRMD4A (ENSUMAG00000012339) #14	ENSUMAG00000012362 #17	CDNF (ENSUMAG00000012364) #19	HSPA14 (ENSUMAG00000012366) #21	SUV39H2 (ENSUMAG00000012369) #22	DCLRE1C (ENSUMAG00000012372) #23	ENSUMAG00000012377	ACBD7 (ENSUMAG00000012381) #27	RPP38 (ENSUMAG00000012382)	NMT2 (ENSUMAG00000012383) #28	FAM171A1 (ENSUMAG00000012393) #29	ITGA8 (ENSUMAG00000012429)	ENSUMAG00000012547	ENSUMAG00000012551	PTER (ENSUMAG00000012564)	RSU1 (ENSUMAG00000012571)	CUBN (ENSUMAG00000012581)	TRDMT1 (ENSUMAG00000012633)	VIM (ENSUMAG00000012639)	ST8SIA6 (ENSUMAG00000012695)
Giant Panda	MODERN SPECIES	6	CDC123 (ENSAMEG00000004413)	CAMK1D (ENSAMEG00000017708)	CCDC3 (ENSAMEG00000030513)	OPTN (ENSAMEG00000013477)	MCM10 (ENSAMEG00000013505)	UCMA (ENSAMEG00000013530)	ENSAMEG00000013554	SEPHS1 (ENSAMEG00000013555) #11	ENSAMEG00000013584 #12	PRPF18 (ENSAMEG00000013591) #13	FRMD4A (ENSAMEG00000013617) #14	ENSAMEG00000030477	FAM107B (ENSAMEG00000001488) #17	CDNF (ENSAMEG00000026643) #19	HSPA14 (ENSAMEG00000011471) #21	SUV39H2 (ENSAMEG00000011527) #22	DCLRE1C (ENSAMEG00000011546) #23	ENSAMEG00000030572	ACBD7 (ENSAMEG00000030982) #27	RPP38 (ENSAMEG00000018832)	NMT2 (ENSAMEG00000003078) #28	FAM171A1 (ENSAMEG00000003058) #29	ITGA8 (ENSAMEG00000002860)	MINDY3 (ENSAMEG00000002689)	PTER (ENSAMEG00000010360)	C1QL3 (ENSAMEG00000023523)	RSU1 (ENSAMEG00000010365)	CUBN (ENSAMEG00000010368)	ENSAMEG00000010536	ST8SIA6 (ENSAMEG00000010589)	HACD1 (ENSAMEG00000010611)
Mustelinae	ANCESTRAL SPECIES	83	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.l	ENSGT00390000001775.B.k	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146	ENSGT01030000234535.B	ENSGT00530000062962.a.b
American mink	MODERN SPECIES	388											PRPF18 (ENSNVIG00000024843) #13	FRMD4A (ENSNVIG00000024841) #14	F107B (ENSNVIG00000024839) #17	CDNF (ENSNVIG00000024836) #19	HSPA14 (ENSNVIG00000024834) #21	SUV39H2 (ENSNVIG00000024832) #22	DCLRE1C (ENSNVIG00000024830) #23	MEIG1 (ENSNVIG00000024829)
Ferret	MODERN SPECIES	365	ENSMPUG00000001025	CAMK1D (ENSMPUG00000001021)	OPTN (ENSMPUG00000000984)	MCM10 (ENSMPUG00000000978)	UCMA (ENSMPUG00000000957)	ENSMPUG00000000952	ENSMPUG00000000950	SEPHS1 (ENSMPUG00000000948) #11	ENSMPUG00000000942 #12	PRPF18 (ENSMPUG00000000938) #13	FRMD4A (ENSMPUG00000000936) #14	ENSMPUG00000000934 #17	CDNF (ENSMPUG00000000930) #19	HSPA14 (ENSMPUG00000000926) #21	ENSMPUG00000000924	SUV39H2 (ENSMPUG00000000920) #22	DCLRE1C (ENSMPUG00000000914) #23	ENSMPUG00000000912	MEIG1 (ENSMPUG00000000910)	RPP38 (ENSMPUG00000018523)	NMT2 (ENSMPUG00000000907) #28	FAM171A1 (ENSMPUG00000000904) #29	ENSMPUG00000000902
Felidae	ANCESTRAL SPECIES	2	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b.g	ENSGT00390000014429.b.h	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00990000213600	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Panthera	ANCESTRAL SPECIES		ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b.g	ENSGT00390000014429.b.h	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00990000213600	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Panthera_a	ANCESTRAL SPECIES	5	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b.g	ENSGT00390000014429.b.h	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00990000213600	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
lion	MODERN SPECIES	7	ENSPLOG00000013022	ENSPLOG00000013101	CCDC3 (ENSPLOG00000010769)	OPTN (ENSPLOG00000010860)	MCM10 (ENSPLOG00000010927)	UCMA (ENSPLOG00000011016)	PHYH (ENSPLOG00000011127)	SEPHS1 (ENSPLOG00000011305) #11	BEND7 (ENSPLOG00000011419)	PRPF18 (ENSPLOG00000011562) #13	FRMD4A (ENSPLOG00000011639) #14	ENSPLOG00000011841	FAM107B (ENSPLOG00000011957) #17	CDNF (ENSPLOG00000012111) #19	HSPA14 (ENSPLOG00000012211) #21	SUV39H2 (ENSPLOG00000012292) #22	DCLRE1C (ENSPLOG00000012477) #23	MEIG1 (ENSPLOG00000012585)	ACBD7 (ENSPLOG00000012647) #27	RPP38 (ENSPLOG00000012699)	NMT2 (ENSPLOG00000012739) #28	FAM171A1 (ENSPLOG00000012800) #29	ITGA8 (ENSPLOG00000012932)	MINDY3 (ENSPLOG00000013251)	ENSPLOG00000013349	PTER (ENSPLOG00000013380)	C1QL3 (ENSPLOG00000013472)	RSU1 (ENSPLOG00000013518)	CUBN (ENSPLOG00000013698)	TRDMT1 (ENSPLOG00000014346)	VIM (ENSPLOG00000014474)
leopard	MODERN SPECIES	36	ENSPPRG00000007077	CAMK1D (ENSPPRG00000008477)	ENSPPRG00000008706	CCDC3 (ENSPPRG00000008988)	OPTN (ENSPPRG00000013701)	MCM10 (ENSPPRG00000024643)	UCMA (ENSPPRG00000024482)	PHYH (ENSPPRG00000024217)	SEPHS1 (ENSPPRG00000023204) #11	ENSPPRG00000022692 #12	PRPF18 (ENSPPRG00000000107) #13	FRMD4A (ENSPPRG00000001442) #14	FAM107B (ENSPPRG00000002549) #17	CDNF (ENSPPRG00000002806) #19	HSPA14 (ENSPPRG00000005512) #21	SUV39H2 (ENSPPRG00000003441) #22	MEIG1 (ENSPPRG00000004346)	DCLRE1C (ENSPPRG00000006079) #23	ACBD7 (ENSPPRG00000006482) #27	RPP38 (ENSPPRG00000015329)	NMT2 (ENSPPRG00000008005) #28	FAM171A1 (ENSPPRG00000008132) #29	ITGA8 (ENSPPRG00000008787)	MINDY3 (ENSPPRG00000009362)	PTER (ENSPPRG00000010566)	C1QL3 (ENSPPRG00000011876)	RSU1 (ENSPPRG00000012033)	CUBN (ENSPPRG00000012777)	TRDMT1 (ENSPPRG00000013304)	VIM (ENSPPRG00000016204)	ENSPPRG00000020240
Tiger	MODERN SPECIES	159			CAMK1D (ENSPTIG00000012015)	ENSPTIG00000012658	CCDC3 (ENSPTIG00000013215)	OPTN (ENSPTIG00000013618)	MCM10 (ENSPTIG00000015034)	ENSPTIG00000018248	PHYH (ENSPTIG00000018531)	SEPHS1 (ENSPTIG00000019335) #11	ENSPTIG00000020490 #12	PRPF18 (ENSPTIG00000021094) #13	FAM107B (ENSPTIG00000008289) #17	CDNF (ENSPTIG00000011338) #19	HSPA14 (ENSPTIG00000012198) #21	SUV39H2 (ENSPTIG00000013010) #22	DCLRE1C (ENSPTIG00000015027) #23	MEIG1 (ENSPTIG00000017114)	ACBD7 (ENSPTIG00000017412) #27	RPP38 (ENSPTIG00000007188)	NMT2 (ENSPTIG00000018118) #28	FAM171A1 (ENSPTIG00000020819) #29	ITGA8 (ENSPTIG00000001922)	MINDY3 (ENSPTIG00000009038)	PTER (ENSPTIG00000011822)	ENSPTIG00000013098	RSU1 (ENSPTIG00000013354)	CUBN (ENSPTIG00000015843)	TRDMT1 (ENSPTIG00000021744)	ENSPTIG00000022004	ST8SIA6 (ENSPTIG00000002001)
Cat	MODERN SPECIES	238	NUDT5 (ENSFCAG00000034165)	CDC123 (ENSFCAG00000025803)	CAMK1D (ENSFCAG00000014848)	ENSFCAG00000035079	CCDC3 (ENSFCAG00000030959)	OPTN (ENSFCAG00000003917)	UCMA (ENSFCAG00000045703)	PHYH (ENSFCAG00000003920)	SEPHS1 (ENSFCAG00000003921) #11	BEND7 (ENSFCAG00000004435)	PRPF18 (ENSFCAG00000004436) #13	FRMD4A (ENSFCAG00000004437) #14	FAM107B (ENSFCAG00000036668) #17	CDNF (ENSFCAG00000009153) #19	HSPA14 (ENSFCAG00000009154) #21	SUV39H2 (ENSFCAG00000026613) #22	DCLRE1C (ENSFCAG00000031643) #23	MEIG1 (ENSFCAG00000022479)	ACBD7 (ENSFCAG00000027337) #27	RPP38 (ENSFCAG00000022449)	NMT2 (ENSFCAG00000005147) #28	FAM171A1 (ENSFCAG00000011612) #29	ITGA8 (ENSFCAG00000002252)	MINDY3 (ENSFCAG00000031294)	ENSFCAG00000046902	PTER (ENSFCAG00000013558)	C1QL3 (ENSFCAG00000043670)	RSU1 (ENSFCAG00000013559)	CUBN (ENSFCAG00000013560)	TRDMT1 (ENSFCAG00000035007)	VIM (ENSFCAG00000046228)
Laurasiatheria_c	ANCESTRAL SPECIES	27	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000163231 #20	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Chiroptera	ANCESTRAL SPECIES	55			ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000163231 #20	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Microchiroptera	ANCESTRAL SPECIES	50			ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000163231 #20	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Microbat	MODERN SPECIES	1186									ENSMLUG00000022976	FRMD4A (ENSMLUG00000015636) #14	ENSMLUG00000000831 #17	ENSMLUG00000025247	CDNF (ENSMLUG00000016361) #19	HSPA14 (ENSMLUG00000016367) #21	MSANTD7 (ENSMLUG00000030728) #20	SUV39H2 (ENSMLUG00000015985) #22	DCLRE1C (ENSMLUG00000015990) #23	MEIG1 (ENSMLUG00000001996)	OLAH (ENSMLUG00000027228) #26	ACBD7 (ENSMLUG00000014900) #27	RPP38 (ENSMLUG00000002153)	NMT2 (ENSMLUG00000002155) #28	FAM171A1 (ENSMLUG00000011124) #29
Greater horseshoe bat	MODERN SPECIES	30				OPTN (ENSRFEG00010018564)	MCM10 (ENSRFEG00010018614)	UCMA (ENSRFEG00010018671)	PHYH (ENSRFEG00010018739)	SEPHS1 (ENSRFEG00010018852) #11	ENSRFEG00010018907	BEND7 (ENSRFEG00010018937)	PRPF18 (ENSRFEG00010018969) #13	FRMD4A (ENSRFEG00010019050) #14	FAM107B (ENSRFEG00010019206) #17	CDNF (ENSRFEG00010019298) #19	HSPA14 (ENSRFEG00010019357) #21	SUV39H2 (ENSRFEG00010019418) #22	DCLRE1C (ENSRFEG00010019540) #23	MEIG1 (ENSRFEG00010019650)	OLAH (ENSRFEG00010019677) #26	ACBD7 (ENSRFEG00010019720) #27	RPP38 (ENSRFEG00010019749)	NMT2 (ENSRFEG00010019775) #28	FAM171A1 (ENSRFEG00010019859) #29	ITGA8 (ENSRFEG00010019917)	MINDY3 (ENSRFEG00010020170)	ENSRFEG00010020221	PTER (ENSRFEG00010020253)	C1QL3 (ENSRFEG00010020295)	RSU1 (ENSRFEG00010020311)	CUBN (ENSRFEG00010020510)	TRDMT1 (ENSRFEG00010021313)
Megabat	MODERN SPECIES	1844													FAM107B (ENSPVAG00000013926) #17	CDNF (ENSPVAG00000013927) #19	HSPA14 (ENSPVAG00000013928) #21	SUV39H2 (ENSPVAG00000013929) #22	DCLRE1C (ENSPVAG00000013931) #23	ENSPVAG00000013934
Equus	ANCESTRAL SPECIES	44	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.p	ENSGT00390000001775.B.o	ENSGT00390000000950.c.b #11	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Horse	MODERN SPECIES	21	CDC123 (ENSECAG00000010392)	CAMK1D (ENSECAG00000019290)	CCDC3 (ENSECAG00000036634)	OPTN (ENSECAG00000007747)	MCM10 (ENSECAG00000024473)	UCMA (ENSECAG00000024146)	ENSECAG00000036496	ENSECAG00000029564	SEPHS1 (ENSECAG00000014281) #11	BEND7 (ENSECAG00000009086) #12	PRPF18 (ENSECAG00000006997) #13	FRMD4A (ENSECAG00000013094) #14	FAM107B (ENSECAG00000010777) #17	CDNF (ENSECAG00000035232) #19	HSPA14 (ENSECAG00000018882) #21	SUV39H2 (ENSECAG00000016965) #22	DCLRE1C (ENSECAG00000023853) #23	MEIG1 (ENSECAG00000038073)	OLAH (ENSECAG00000020065) #26	ACBD7 (ENSECAG00000031970) #27	RPP38 (ENSECAG00000004371)	NMT2 (ENSECAG00000010704) #28	FAM171A1 (ENSECAG00000016066) #29	ITGA8 (ENSECAG00000012863)	MINDY3 (ENSECAG00000000469)	PTER (ENSECAG00000000081)	ENSECAG00000039587	RSU1 (ENSECAG00000017242)	CUBN (ENSECAG00000016638)	VIM (ENSECAG00000004216)	TRDMT1 (ENSECAG00000013644)
Donkey	MODERN SPECIES	21	CDC123 (ENSEASG00005019289)	CAMK1D (ENSEASG00005019291)	CCDC3 (ENSEASG00005019294)	OPTN (ENSEASG00005019299)	MCM10 (ENSEASG00005019343)	UCMA (ENSEASG00005019359)	ENSEASG00005019364	ENSEASG00005019362	SEPHS1 (ENSEASG00005019368) #11	ENSEASG00005019370 #12	PRPF18 (ENSEASG00005019373) #13	FRMD4A (ENSEASG00005019377) #14	FAM107B (ENSEASG00005030494) #17	CDNF (ENSEASG00005032214) #19	HSPA14 (ENSEASG00005019388) #21	SUV39H2 (ENSEASG00005019394) #22	DCLRE1C (ENSEASG00005019427) #23	ENSEASG00005027148	OLAH (ENSEASG00005019781) #26	ACBD7 (ENSEASG00005019782) #27	RPP38 (ENSEASG00005019783)	NMT2 (ENSEASG00005019784) #28	FAM171A1 (ENSEASG00005035873) #29	ITGA8 (ENSEASG00005019797)	MINDY3 (ENSEASG00005019806)	PTER (ENSEASG00005019810)	C1QL3 (ENSEASG00005019813)	RSU1 (ENSEASG00005019814)	CUBN (ENSEASG00005019821)	VIM (ENSEASG00005019833)	ST8SIA6 (ENSEASG00005019834)
Eulipotyphla	ANCESTRAL SPECIES	2193																ENSGT00940000156788 #22	ENSGT00940000157779 #23
Hedgehog	MODERN SPECIES	4755																SUV39H2 (ENSEEUG00000003835) #22	ENSEEUG00000003852 #23
Common shrew	MODERN SPECIES	3676																SUV39H2 (ENSSARG00000003389) #22
Atlantogenata	ANCESTRAL SPECIES	5	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00940000162606 #12	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Afrotheria	ANCESTRAL SPECIES	11	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Afrotheria_a	ANCESTRAL SPECIES	11	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28	ENSGT00950000183184.a.b #29	ENSGT00940000156737	ENSGT00940000155958	ENSGT00390000006960	ENSGT00940000161639	ENSGT00940000158676	ENSGT00940000155299.A	ENSGT00390000016416	ENSGT00940000156146
Hyrax	MODERN SPECIES	6370														CDNF (ENSPCAG00000000606) #19	HSPA14 (ENSPCAG00000000618) #21	SUV39H2 (ENSPCAG00000000673) #22	DCLRE1C (ENSPCAG00000000706) #23
Elephant	MODERN SPECIES	108	NUDT5 (ENSLAFG00000012052)	CDC123 (ENSLAFG00000000152)	CAMK1D (ENSLAFG00000000154)	CCDC3 (ENSLAFG00000001794)	OPTN (ENSLAFG00000013308)	MCM10 (ENSLAFG00000004698)	PHYH (ENSLAFG00000004706)	SEPHS1 (ENSLAFG00000004670) #11	BEND7 (ENSLAFG00000013563)	PRPF18 (ENSLAFG00000007753) #13	FRMD4A (ENSLAFG00000004552) #14	ENSLAFG00000006404 #17	CDNF (ENSLAFG00000006406) #19	MSANTD7 (ENSLAFG00000029967) #20	HSPA14 (ENSLAFG00000006408) #21	SUV39H2 (ENSLAFG00000023099) #22	DCLRE1C (ENSLAFG00000011704) #23	MEIG1 (ENSLAFG00000022841)	OLAH (ENSLAFG00000001510) #26	ACBD7 (ENSLAFG00000001513) #27	RPP38 (ENSLAFG00000000509)	NMT2 (ENSLAFG00000030387) #28	FAM171A1 (ENSLAFG00000017789) #29	ITGA8 (ENSLAFG00000015643)	MINDY3 (ENSLAFG00000000576)	PTER (ENSLAFG00000015079)	C1QL3 (ENSLAFG00000015084)	RSU1 (ENSLAFG00000013394)	CUBN (ENSLAFG00000013402)	TRDMT1 (ENSLAFG00000001075)	VIM (ENSLAFG00000018142)
Tenrec	MODERN SPECIES	7577														CDNF (ENSETEG00000017992) #19	HSPA14 (ENSETEG00000017994) #21	SUV39H2 (ENSETEG00000017998) #22	DCLRE1C (ENSETEG00000018001) #23
Xenarthra	ANCESTRAL SPECIES	420												ENSGT00390000011228.b.b #17	ENSGT00940000168430	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000015518 #26	ENSGT00940000161184 #27	ENSGT00390000007526	ENSGT00390000017837.b #28
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	808												ENSDNOG00000049129 #17	ENSDNOG00000003775	MSANTD7 (ENSDNOG00000042607) #20	HSPA14 (ENSDNOG00000043841) #21	ENSDNOG00000014532 #22	DCLRE1C (ENSDNOG00000007426) #23	MEIG1 (ENSDNOG00000010602)	ENSDNOG00000043519	ENSDNOG00000010720 #26	ACBD7 (ENSDNOG00000016935) #27	RPP38 (ENSDNOG00000040314)	NMT2 (ENSDNOG00000041097) #28
Armadillo	MODERN SPECIES	337														STK32A (ENSDNOG00000039789)	DPYSL3 (ENSDNOG00000032930)	ENSDNOG00000031148 #22	JAKMIP2 (ENSDNOG00000012067)	SPINK1 (ENSDNOG00000045163)	SCGB3A2 (ENSDNOG00000015675)	C5orf46 (ENSDNOG00000013950)	SPINK5 (ENSDNOG00000013119)	ENSDNOG00000045800	SPINK14 (ENSDNOG00000038134)	SPINK6 (ENSDNOG00000002961)	ENSDNOG00000033073
Sloth	MODERN SPECIES	6966															HSPA14 (ENSCHOG00000012485) #21	SUV39H2 (ENSCHOG00000012519) #22
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f
Marsupialia_b	ANCESTRAL SPECIES	12	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000163231 #20	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f
Diprotodontia	ANCESTRAL SPECIES	16	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000163231 #20	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f
Diprotodontia_a	ANCESTRAL SPECIES	18	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000163231 #20	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f
Common wonbat	MODERN SPECIES	1064	NUDT5 (ENSVURG00010014004)	CDC123 (ENSVURG00010013980)	CAMK1D (ENSVURG00010013959)	CCDC3 (ENSVURG00010013944)	OPTN (ENSVURG00010013929)	MCM10 (ENSVURG00010013915)	UCMA (ENSVURG00010013901)	PHYH (ENSVURG00010013888)	BEND7 (ENSVURG00010013875)	ENSVURG00010013864	PRPF18 (ENSVURG00010013854) #13	FRMD4A (ENSVURG00010013819) #14	ENSVURG00010013807 #17	CDNF (ENSVURG00010013801) #19	HSPA14 (ENSVURG00010013789) #21	SUV39H2 (ENSVURG00010013779) #22	DCLRE1C (ENSVURG00010013772) #23	MEIG1 (ENSVURG00010013765)	ENSVURG00010013749	TMEM243 (ENSVURG00010013742)	DMTF1 (ENSVURG00010013719)	ELAPOR2 (ENSVURG00010013705)	GRM3 (ENSVURG00010013695)	SEMA3D (ENSVURG00010013681)	SEMA3A (ENSVURG00010013666)	ENSVURG00010013645	SEMA3E (ENSVURG00010013633)	ENSVURG00010013627	ENSVURG00010013625	ENSVURG00010013617	ENSVURG00010013609
koala	MODERN SPECIES	77	CAMK1D (ENSPCIG00000006626)	CCDC3 (ENSPCIG00000035033)	OPTN (ENSPCIG00000006619)	MCM10 (ENSPCIG00000006612)	UCMA (ENSPCIG00000006610)	PHYH (ENSPCIG00000006607)	SEPHS1 (ENSPCIG00000006605) #11	BEND7 (ENSPCIG00000006593)	PRPF18 (ENSPCIG00000012963) #13	FRMD4A (ENSPCIG00000006587) #14	ENSPCIG00000023215 #17	ENSPCIG00000023216	CDNF (ENSPCIG00000024399) #19	HSPA14 (ENSPCIG00000024396) #21	MSANTD7 (ENSPCIG00000024397) #20	SUV39H2 (ENSPCIG00000024395) #22	DCLRE1C (ENSPCIG00000024394) #23	ENSPCIG00000024390	TMEM243 (ENSPCIG00000024389)	DMTF1 (ENSPCIG00000024387)	ELAPOR2 (ENSPCIG00000014821)	GRM3 (ENSPCIG00000014828)	SEMA3D (ENSPCIG00000013757)	SEMA3A (ENSPCIG00000013761)	SEMA3E (ENSPCIG00000024900)
Tasmanian devil	MODERN SPECIES	4	CAMK1D (ENSSHAG00000013190)	ENSSHAG00000028637	OPTN (ENSSHAG00000014689)	MCM10 (ENSSHAG00000014811)	UCMA (ENSSHAG00000014962)	PHYH (ENSSHAG00000015098)	SEPHS1 (ENSSHAG00000015286) #11	BEND7 (ENSSHAG00000016065)	ENSSHAG00000030316	PRPF18 (ENSSHAG00000022886) #13	FRMD4A (ENSSHAG00000016639) #14	FAM107B (ENSSHAG00000029915) #17	CDNF (ENSSHAG00000018400) #19	MSANTD7 (ENSSHAG00000028221) #20	HSPA14 (ENSSHAG00000018420) #21	SUV39H2 (ENSSHAG00000018461) #22	DCLRE1C (ENSSHAG00000018480) #23	ENSSHAG00000026359	ENSSHAG00000029441	ENSSHAG00000018587	ELAPOR2 (ENSSHAG00000018699)	GRM3 (ENSSHAG00000018798)	SEMA3D (ENSSHAG00000009028)	SEMA3A (ENSSHAG00000014211)	SEMA3E (ENSSHAG00000001404)	CACNA2D1 (ENSSHAG00000012483)	ENSSHAG00000020651	HGF (ENSSHAG00000015775)	SEMA3C (ENSSHAG00000005466)	CD36 (ENSSHAG00000008512)	GNAT3 (ENSSHAG00000029769)
Opossum	MODERN SPECIES	7	NUDT5 (ENSMODG00000016824)	CAMK1D (ENSMODG00000016833)	CCDC3 (ENSMODG00000016837)	OPTN (ENSMODG00000016841)	MCM10 (ENSMODG00000016851)	UCMA (ENSMODG00000016854)	PHYH (ENSMODG00000016858)	SEPHS1 (ENSMODG00000016864) #11	BEND7 (ENSMODG00000016875)	ENSMODG00000016902 #13	FRMD4A (ENSMODG00000016916) #14	ENSMODG00000016919 #17	CDNF (ENSMODG00000047183) #19	HSPA14 (ENSMODG00000016926) #21	MSANTD7 (ENSMODG00000016929) #20	SUV39H2 (ENSMODG00000016930) #22	DCLRE1C (ENSMODG00000016932) #23	MEIG1 (ENSMODG00000016936)	TMEM243 (ENSMODG00000016937)	DMTF1 (ENSMODG00000016953)	ELAPOR2 (ENSMODG00000016956)	GRM3 (ENSMODG00000016960)	ENSMODG00000049637	ENSMODG00000044151	SEMA3D (ENSMODG00000016975)	ENSMODG00000011856	SEMA3A (ENSMODG00000016983)	SEMA3E (ENSMODG00000016990)	ENSMODG00000051548	ENSMODG00000050932	ENSMODG00000017000
Platypus	MODERN SPECIES	4	NUDT5 (ENSOANG00000015421)	CDC123 (ENSOANG00000015419)	CAMK1D (ENSOANG00000043737)	CCDC3 (ENSOANG00000041744)	OPTN (ENSOANG00000015410)	UCMA (ENSOANG00000015409)	PHYH (ENSOANG00000015408)	SEPHS1 (ENSOANG00000015403) #11	ENSOANG00000048713	BEND7 (ENSOANG00000015406)	PRPF18 (ENSOANG00000015404) #13	ENSOANG00000015401 #14	FAM107B (ENSOANG00000048760) #17	ENSOANG00000015397 #20	HSPA14 (ENSOANG00000019752) #21	SUV39H2 (ENSOANG00000015395) #22	DCLRE1C (ENSOANG00000015394) #23	MEIG1 (ENSOANG00000015393)	ENSOANG00000015392	DMTF1 (ENSOANG00000015391)	ELAPOR2 (ENSOANG00000015389)	GRM3 (ENSOANG00000015386)	SEMA3D (ENSOANG00000013043)	SEMA3A (ENSOANG00000013046)	ENSOANG00000013048	SEMA3E (ENSOANG00000013049)	PCLO (ENSOANG00000013051)	CACNA2D1 (ENSOANG00000003483)	HGF (ENSOANG00000003484)	SEMA3C (ENSOANG00000003486)	CD36 (ENSOANG00000003487)
Sauria	ANCESTRAL SPECIES	4	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000168430	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000163878	ENSGT00940000159379
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000168430	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f
Archosauria	ANCESTRAL SPECIES	4	ENSGT00390000003721.d.b	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f
Aves	ANCESTRAL SPECIES	1	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000168430	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f
Neognathae	ANCESTRAL SPECIES	3	ENSGT00390000003721.d.b	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000168430	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00950000183125.a	ENSGT00390000003721.d.b	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f
Neognathae_c	ANCESTRAL SPECIES		ENSGT00950000183125.a	ENSGT00390000003721.d.b	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422
Golden eagle	MODERN SPECIES	21	DHTKD1 (ENSACCG00020003794)	SEC61A2 (ENSACCG00020003834)	NUDT5 (ENSACCG00020003857)	CDC123 (ENSACCG00020003875)	CAMK1D (ENSACCG00020003893)	CCDC3 (ENSACCG00020003923)	OPTN (ENSACCG00020003947)	MCM10 (ENSACCG00020003969)	PHYH (ENSACCG00020003997)	SEPHS1 (ENSACCG00020004020) #11	BEND7 (ENSACCG00020004029)	PRPF18 (ENSACCG00020004045) #13	FRMD4A (ENSACCG00020004072) #14	FAM107B (ENSACCG00020006052) #17	HSPA14 (ENSACCG00020006069) #21	SUV39H2 (ENSACCG00020006085) #22	DCLRE1C (ENSACCG00020006095) #23	MEIG1 (ENSACCG00020006112)	TMEM243 (ENSACCG00020006119)	DMTF1 (ENSACCG00020006143)	ELAPOR2 (ENSACCG00020006183)	GRM3 (ENSACCG00020006204)	SEMA3D (ENSACCG00020006219)	SEMA3A (ENSACCG00020006236)	SEMA3E (ENSACCG00020006315)	PCLO (ENSACCG00020006505)	CACNA2D1 (ENSACCG00020006733)	HGF (ENSACCG00020006784)	SEMA3C (ENSACCG00020006807)	CD36 (ENSACCG00020006832)	GNAT3 (ENSACCG00020006865)
Kakapo	MODERN SPECIES	20	DHTKD1 (ENSSHBG00005004417)	SEC61A2 (ENSSHBG00005004426)	NUDT5 (ENSSHBG00005004431)	CDC123 (ENSSHBG00005004439)	CAMK1D (ENSSHBG00005004444)	CCDC3 (ENSSHBG00005004452)	OPTN (ENSSHBG00005004458)	MCM10 (ENSSHBG00005004474)	PHYH (ENSSHBG00005004485)	SEPHS1 (ENSSHBG00005004488) #11	BEND7 (ENSSHBG00005004494)	PRPF18 (ENSSHBG00005004517) #13	FRMD4A (ENSSHBG00005004533) #14	FAM107B (ENSSHBG00005004552) #17	HSPA14 (ENSSHBG00005004564) #21	SUV39H2 (ENSSHBG00005004576) #22	DCLRE1C (ENSSHBG00005004586) #23	MEIG1 (ENSSHBG00005004597)	TMEM243 (ENSSHBG00005004601)	DMTF1 (ENSSHBG00005004611)	ELAPOR2 (ENSSHBG00005004620)	GRM3 (ENSSHBG00005004628)	SEMA3D (ENSSHBG00005004669)	SEMA3A (ENSSHBG00005004729)	SEMA3E (ENSSHBG00005004746)	ENSSHBG00005004787	PCLO (ENSSHBG00005004840)	CACNA2D1 (ENSSHBG00005005111)	HGF (ENSSHBG00005005137)	SEMA3C (ENSSHBG00005005362)	CD36 (ENSSHBG00005005419)
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00950000183125.a	ENSGT00390000003721.d.b	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT01030000235253.c.b	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00950000183125.a	ENSGT00390000003721.d.b	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT01030000235253.c.b	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379
Flycatcher	MODERN SPECIES	10	DHTKD1 (ENSFALG00000001894)	SEC61A2 (ENSFALG00000001897)	NUDT5 (ENSFALG00000001898)	CDC123 (ENSFALG00000025654)	CAMK1D (ENSFALG00000026842)	CCDC3 (ENSFALG00000001903)	OPTN (ENSFALG00000001906)	MCM10 (ENSFALG00000001907)	PHYH (ENSFALG00000001909)	SEPHS1 (ENSFALG00000001910) #11	BEND7 (ENSFALG00000001911)	PRPF18 (ENSFALG00000001912) #13	FRMD4A (ENSFALG00000001916) #14	FAM107B (ENSFALG00000001924) #17	HSPA14 (ENSFALG00000001925) #21	SUV39H2 (ENSFALG00000001926) #22	DCLRE1C (ENSFALG00000023051) #23	TMEM243 (ENSFALG00000001930)	DMTF1 (ENSFALG00000001933)	ELAPOR2 (ENSFALG00000001941)	GRM3 (ENSFALG00000001956)	SEMA3D (ENSFALG00000010647)	ENSFALG00000010650	SEMA3A (ENSFALG00000010631)	ENSFALG00000025896	SEMA3E (ENSFALG00000010590)	PCLO (ENSFALG00000010573)	CACNA2D1 (ENSFALG00000010545)	HGF (ENSFALG00000010514)	SEMA3C (ENSFALG00000010506)	CD36 (ENSFALG00000010501)
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00950000183125.a	ENSGT00390000003721.d.b	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT01030000235253.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00950000183125.a	ENSGT00390000003721.d.b	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT01030000235253.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379
Common canary	MODERN SPECIES	6	DHTKD1 (ENSSCAG00000009647)	SEC61A2 (ENSSCAG00000009638)	NUDT5 (ENSSCAG00000009633)	CDC123 (ENSSCAG00000009626)	CAMK1D (ENSSCAG00000009616)	CCDC3 (ENSSCAG00000009610)	OPTN (ENSSCAG00000009603)	MCM10 (ENSSCAG00000009596)	PHYH (ENSSCAG00000009587)	SEPHS1 (ENSSCAG00000009583) #11	ENSSCAG00000009575 #12	PRPF18 (ENSSCAG00000009557) #13	FRMD4A (ENSSCAG00000009530) #14	FAM107B (ENSSCAG00000009497) #17	HSPA14 (ENSSCAG00000009459) #21	SUV39H2 (ENSSCAG00000009456) #22	DCLRE1C (ENSSCAG00000009449) #23	MEIG1 (ENSSCAG00000009444)	TMEM243 (ENSSCAG00000009441)	DMTF1 (ENSSCAG00000009427)	ELAPOR2 (ENSSCAG00000009012)	GRM3 (ENSSCAG00000008905)	SEMA3D (ENSSCAG00000008890)	SEMA3A (ENSSCAG00000008869)	SEMA3E (ENSSCAG00000008860)	ENSSCAG00000008846	ENSSCAG00000008841	CACNA2D1 (ENSSCAG00000008823)	HGF (ENSSCAG00000008809)	SEMA3C (ENSSCAG00000008777)	CD36 (ENSSCAG00000008760)
Zebra finch	MODERN SPECIES	11	SEC61A2 (ENSTGUG00000002185)	NUDT5 (ENSTGUG00000002198)	CDC123 (ENSTGUG00000002204)	CAMK1D (ENSTGUG00000020240)	CCDC3 (ENSTGUG00000002240)	OPTN (ENSTGUG00000002243)	MCM10 (ENSTGUG00000002254)	PHYH (ENSTGUG00000002270)	SEPHS1 (ENSTGUG00000002278) #11	BEND7 (ENSTGUG00000002282)	PRPF18 (ENSTGUG00000002286) #13	FRMD4A (ENSTGUG00000002298) #14	ENSTGUG00000018791	FAM107B (ENSTGUG00000022507) #17	HSPA14 (ENSTGUG00000002324) #21	SUV39H2 (ENSTGUG00000002338) #22	DCLRE1C (ENSTGUG00000002342) #23	MEIG1 (ENSTGUG00000025713)	TMEM243 (ENSTGUG00000002364)	DMTF1 (ENSTGUG00000002365)	ELAPOR2 (ENSTGUG00000002377)	GRM3 (ENSTGUG00000002399)	ENSTGUG00000022635	SEMA3D (ENSTGUG00000002407)	SEMA3A (ENSTGUG00000002449)	SEMA3E (ENSTGUG00000002487)	PCLO (ENSTGUG00000002518)	CACNA2D1 (ENSTGUG00000002536)	HGF (ENSTGUG00000002584)	SEMA3C (ENSTGUG00000002604)	CD36 (ENSTGUG00000002619)
Medium ground finch	MODERN SPECIES	112	SEC61A2 (ENSGFOG00000008149)	NUDT5 (ENSGFOG00000008280)	CDC123 (ENSGFOG00000008294)	CAMK1D (ENSGFOG00000008456)	CCDC3 (ENSGFOG00000008550)	OPTN (ENSGFOG00000008556)	MCM10 (ENSGFOG00000008768)	PHYH (ENSGFOG00000008782)	SEPHS1 (ENSGFOG00000008817) #11	BEND7 (ENSGFOG00000008824)	PRPF18 (ENSGFOG00000008828) #13	FRMD4A (ENSGFOG00000008837) #14	ENSGFOG00000008841	FAM107B (ENSGFOG00000008846) #17	HSPA14 (ENSGFOG00000008850) #21	SUV39H2 (ENSGFOG00000008852) #22	DCLRE1C (ENSGFOG00000008856) #23	MEIG1 (ENSGFOG00000008865)	TMEM243 (ENSGFOG00000008867)	DMTF1 (ENSGFOG00000008875)	ELAPOR2 (ENSGFOG00000008895)	GRM3 (ENSGFOG00000008962)	ENSGFOG00000008969	SEMA3D (ENSGFOG00000008979)	ENSGFOG00000008988
Great tit	MODERN SPECIES	10	SEC61A2 (ENSPMJG00000001428)	NUDT5 (ENSPMJG00000001442)	CDC123 (ENSPMJG00000001458)	CAMK1D (ENSPMJG00000001549)	CCDC3 (ENSPMJG00000001553)	OPTN (ENSPMJG00000001627)	MCM10 (ENSPMJG00000001633)	PHYH (ENSPMJG00000001654)	SEPHS1 (ENSPMJG00000001657) #11	BEND7 (ENSPMJG00000001661)	PRPF18 (ENSPMJG00000001770) #13	ENSPMJG00000001785 #14	ENSPMJG00000001805 #14	FAM107B (ENSPMJG00000001851) #17	HSPA14 (ENSPMJG00000001887) #21	SUV39H2 (ENSPMJG00000001900) #22	DCLRE1C (ENSPMJG00000001908) #23	MEIG1 (ENSPMJG00000001914)	TMEM243 (ENSPMJG00000001917)	DMTF1 (ENSPMJG00000001922)	ELAPOR2 (ENSPMJG00000002064)	GRM3 (ENSPMJG00000002101)	ENSPMJG00000002210	SEMA3D (ENSPMJG00000002227)	ENSPMJG00000002253	SEMA3A (ENSPMJG00000002293)	SEMA3E (ENSPMJG00000002363)	PCLO (ENSPMJG00000002596)	ENSPMJG00000002776	CACNA2D1 (ENSPMJG00000002894)	HGF (ENSPMJG00000002930)
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00390000003721.d.b	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000168430	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422
Phasianidae	ANCESTRAL SPECIES		ENSGT00390000003721.d.b	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000168430	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422
Japanese quail	MODERN SPECIES		SEC61A2 (ENSCJPG00005004471)	NUDT5 (ENSCJPG00005004472)	CDC123 (ENSCJPG00005004475)	CAMK1D (ENSCJPG00005004517)	CCDC3 (ENSCJPG00005004519)	OPTN (ENSCJPG00005004520)	MCM10 (ENSCJPG00005004521)	PHYH (ENSCJPG00005004524)	SEPHS1 (ENSCJPG00005004635) #11	BEND7 (ENSCJPG00005004636)	PRPF18 (ENSCJPG00005004637) #13	FRMD4A (ENSCJPG00005004644) #14	FAM107B (ENSCJPG00005004650) #17	ENSCJPG00005004677	HSPA14 (ENSCJPG00005004679) #21	SUV39H2 (ENSCJPG00005004689) #22	DCLRE1C (ENSCJPG00005004690) #23	MEIG1 (ENSCJPG00005004691)	TMEM243 (ENSCJPG00005004692)	DMTF1 (ENSCJPG00005004693)	ELAPOR2 (ENSCJPG00005004699)	GRM3 (ENSCJPG00005004710)	SEMA3D (ENSCJPG00005004721)	SEMA3A (ENSCJPG00005004970)	SEMA3E (ENSCJPG00005004978)	PCLO (ENSCJPG00005004987)	CACNA2D1 (ENSCJPG00005005011)	HGF (ENSCJPG00005005049)	SEMA3C (ENSCJPG00005005085)	CD36 (ENSCJPG00005005096)	GNAT3 (ENSCJPG00005005106)
Phasianidae_b	ANCESTRAL SPECIES	9	ENSGT00950000183125.a	ENSGT00390000003721.d.b	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422
Chicken	MODERN SPECIES		DHTKD1 (ENSGALG00010007883)	SEC61A2 (ENSGALG00010005831)	NUDT5 (ENSGALG00010005926)	CDC123 (ENSGALG00010006015)	CAMK1D (ENSGALG00010005360)	CCDC3 (ENSGALG00010005368)	OPTN (ENSGALG00010005383)	MCM10 (ENSGALG00010005389)	PHYH (ENSGALG00010005394)	SEPHS1 (ENSGALG00010005398) #11	BEND7 (ENSGALG00010005404)	PRPF18 (ENSGALG00010005699) #13	FRMD4A (ENSGALG00010005800) #14	FAM107B (ENSGALG00010005879) #17	HSPA14 (ENSGALG00010005964) #21	SUV39H2 (ENSGALG00010005979) #22	DCLRE1C (ENSGALG00010006004) #23	MEIG1 (ENSGALG00010006032)	TMEM243 (ENSGALG00010006053)	DMTF1 (ENSGALG00010006064)	ELAPOR2 (ENSGALG00010005425)	GRM3 (ENSGALG00010005431)	SEMA3D (ENSGALG00010005457)	SEMA3A (ENSGALG00010005470)	SEMA3E (ENSGALG00010006251)	PCLO (ENSGALG00010006261)	CACNA2D1 (ENSGALG00010010410)	ENSGALG00010010433	HGF (ENSGALG00010010439)	SEMA3C (ENSGALG00010010460)	CD36 (ENSGALG00010008392)
Turkey	MODERN SPECIES		DHTKD1 (ENSMGAG00000004700)	SEC61A2 (ENSMGAG00000004679)	NUDT5 (ENSMGAG00000004627)	CDC123 (ENSMGAG00000004618)	CAMK1D (ENSMGAG00000004740)	CCDC3 (ENSMGAG00000004919)	OPTN (ENSMGAG00000004793)	MCM10 (ENSMGAG00000004763)	PHYH (ENSMGAG00000004924)	SEPHS1 (ENSMGAG00000004862) #11	ENSMGAG00000004840 #12	PRPF18 (ENSMGAG00000005023) #13	FRMD4A (ENSMGAG00000004946) #14	FAM107B (ENSMGAG00000005048) #17	HSPA14 (ENSMGAG00000005123) #21	SUV39H2 (ENSMGAG00000005108) #22	DCLRE1C (ENSMGAG00000005053) #23	MEIG1 (ENSMGAG00000005187)	DMTF1 (ENSMGAG00000005151)	ENSMGAG00000018490	ELAPOR2 (ENSMGAG00000005209)	GRM3 (ENSMGAG00000005189)	SEMA3D (ENSMGAG00000005266)	ENSMGAG00000017768	GATA3 (ENSMGAG00000004516)	TAF3 (ENSMGAG00000004479)	ATP5F1C (ENSMGAG00000004441)	KIN (ENSMGAG00000004418)	ITIH5 (ENSMGAG00000004254)	ITIH2 (ENSMGAG00000004333)	ENSMGAG00000004232
Anatidae	ANCESTRAL SPECIES	28	ENSGT00390000003721.d.b	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00940000168430	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422
Pink-footed goose	MODERN SPECIES	6	DHTKD1 (ENSABRG00000013791)	SEC61A2 (ENSABRG00000013810)	NUDT5 (ENSABRG00000013816)	CDC123 (ENSABRG00000013820)	CAMK1D (ENSABRG00000013829)	CCDC3 (ENSABRG00000013843)	OPTN (ENSABRG00000013847)	MCM10 (ENSABRG00000013868)	PHYH (ENSABRG00000013890)	SEPHS1 (ENSABRG00000013896) #11	BEND7 (ENSABRG00000013910)	PRPF18 (ENSABRG00000013921) #13	FRMD4A (ENSABRG00000013927) #14	FAM107B (ENSABRG00000013950) #17	HSPA14 (ENSABRG00000013965) #21	SUV39H2 (ENSABRG00000013970) #22	DCLRE1C (ENSABRG00000013974) #23	MEIG1 (ENSABRG00000013980)	TMEM243 (ENSABRG00000013985)	DMTF1 (ENSABRG00000013989)	ELAPOR2 (ENSABRG00000014010)	GRM3 (ENSABRG00000014046)	SEMA3D (ENSABRG00000014089)	ENSABRG00000014097	SEMA3A (ENSABRG00000014103)	SEMA3E (ENSABRG00000014110)	PCLO (ENSABRG00000014123)	CACNA2D1 (ENSABRG00000014154)	HGF (ENSABRG00000014178)	SEMA3C (ENSABRG00000014186)	ENSABRG00000014191
Duck	MODERN SPECIES		DHTKD1 (ENSAPLG00000010342)	SEC61A2 (ENSAPLG00000005921)	NUDT5 (ENSAPLG00000005616)	CDC123 (ENSAPLG00000005383)	CAMK1D (ENSAPLG00000005323)	OPTN (ENSAPLG00000004645)	MCM10 (ENSAPLG00000004340)	PHYH (ENSAPLG00000004121)	SEPHS1 (ENSAPLG00000003830) #11	BEND7 (ENSAPLG00000003779)	PRPF18 (ENSAPLG00000003387) #13	ENSAPLG00000023557 #14	FAM107B (ENSAPLG00000002518) #17	ENSAPLG00000027867	HSPA14 (ENSAPLG00000006261) #21	SUV39H2 (ENSAPLG00000006124) #22	DCLRE1C (ENSAPLG00000005600) #23	ENSAPLG00000019450	MEIG1 (ENSAPLG00000005597)	TMEM243 (ENSAPLG00000026222)	DMTF1 (ENSAPLG00000009042)	ELAPOR2 (ENSAPLG00000009322)	GRM3 (ENSAPLG00000010134)	SEMA3D (ENSAPLG00000010446)	SEMA3A (ENSAPLG00000012883)	SEMA3E (ENSAPLG00000013554)	ENSAPLG00000013794	ENSAPLG00000013931	CACNA2D1 (ENSAPLG00000003174)	ENSAPLG00000024194	ENSAPLG00000003468
African ostrich	MODERN SPECIES	801														CDNF (ENSSCUG00000012425) #19	HSPA14 (ENSSCUG00000012427) #21	SUV39H2 (ENSSCUG00000012430) #22	DCLRE1C (ENSSCUG00000012431) #23	MEIG1 (ENSSCUG00000012433)	TMEM243 (ENSSCUG00000012436)	DMTF1 (ENSSCUG00000012440)	ELAPOR2 (ENSSCUG00000012445)	GRM3 (ENSSCUG00000012450)	SEMA3D (ENSSCUG00000012455)	SEMA3A (ENSSCUG00000012458)	SEMA3E (ENSSCUG00000012462)	PCLO (ENSSCUG00000012468)	ENSSCUG00000012482
Australian saltwater crocodile	MODERN SPECIES	49	NUDT5 (ENSCPRG00005000735)	CDC123 (ENSCPRG00005000731)	CAMK1D (ENSCPRG00005000727)	CCDC3 (ENSCPRG00005000622)	OPTN (ENSCPRG00005000560)	PHYH (ENSCPRG00005000544)	MCM10 (ENSCPRG00005000535)	UCMA (ENSCPRG00005000528)	SEPHS1 (ENSCPRG00005000489) #11	ENSCPRG00005000481 #12	PRPF18 (ENSCPRG00005000467) #13	FRMD4A (ENSCPRG00005000413) #14	FAM107B (ENSCPRG00005000306) #17	CDNF (ENSCPRG00005000264) #19	HSPA14 (ENSCPRG00005000247) #21	SUV39H2 (ENSCPRG00005000211) #22	DCLRE1C (ENSCPRG00005000194) #23	ENSCPRG00005000184	TMEM243 (ENSCPRG00005000154)	DMTF1 (ENSCPRG00005015209)	ELAPOR2 (ENSCPRG00005015196)	GRM3 (ENSCPRG00005015181)	ENSCPRG00005015166	SEMA3D (ENSCPRG00005015146)	SEMA3A (ENSCPRG00005015120)	SEMA3E (ENSCPRG00005015034)	ENSCPRG00005014979	ENSCPRG00005014965	CACNA2D1 (ENSCPRG00005014923)	HGF (ENSCPRG00005014861)	ENSCPRG00005014819
Cryptodira	ANCESTRAL SPECIES	11	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00390000003057	ENSGT00390000009272.q	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380.a #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	2128						ENSCABG00000000987	SEC14L2 (ENSCABG00000000996)	MTFP1 (ENSCABG00000001116)	GAL3ST1 (ENSCABG00000001122)	ENSCABG00000001126	FAM107B (ENSCABG00000001130) #17	CDNF (ENSCABG00000001153) #19	ENSCABG00000001157 #21	ENSCABG00000001160 #21	ENSCABG00000001163 #22	ENSCABG00000001165 #22	DCLRE1C (ENSCABG00000001185) #23	MEIG1 (ENSCABG00000001468)
Abingdon island giant tortoise	MODERN SPECIES	2128							ENSCABG00000000987	SEC14L2 (ENSCABG00000000996)	MTFP1 (ENSCABG00000001116)	GAL3ST1 (ENSCABG00000001122)	ENSCABG00000001126	FAM107B (ENSCABG00000001130) #17	CDNF (ENSCABG00000001153) #19	ENSCABG00000001157 #21	ENSCABG00000001160 #21	ENSCABG00000001163 #22	ENSCABG00000001165 #22	DCLRE1C (ENSCABG00000001185) #23	MEIG1 (ENSCABG00000001468)
Goode s thornscrub tortoise	MODERN SPECIES		ENSGEVG00005003819	CAMK1D (ENSGEVG00005003804)	CCDC3 (ENSGEVG00005003789)	OPTN (ENSGEVG00005003776)	MCM10 (ENSGEVG00005003755)	ENSGEVG00005003693	UCMA (ENSGEVG00005003658)	ENSGEVG00005003640	SEPHS1 (ENSGEVG00005003629) #11	BEND7 (ENSGEVG00005006623)	PRPF18 (ENSGEVG00005006559) #13	FRMD4A (ENSGEVG00005006105) #14	FAM107B (ENSGEVG00005005973) #17	CDNF (ENSGEVG00005005929) #19	HSPA14 (ENSGEVG00005005846) #21	SUV39H2 (ENSGEVG00005005787) #22	DCLRE1C (ENSGEVG00005005741) #23	MEIG1 (ENSGEVG00005005701)	TMEM243 (ENSGEVG00005005683)	DMTF1 (ENSGEVG00005005552)	ELAPOR2 (ENSGEVG00005004879)	GRM3 (ENSGEVG00005004658)	SEMA3D (ENSGEVG00005004551)	SEMA3A (ENSGEVG00005004469)	SEMA3E (ENSGEVG00005004289)	ENSGEVG00005004237	ENSGEVG00005004223	ENSGEVG00005004203	CACNA2D1 (ENSGEVG00005004157)	HGF (ENSGEVG00005004103)	SEMA3C (ENSGEVG00005004066)
Emydidae	ANCESTRAL SPECIES	53	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681.d	ENSGT00940000156681.c	ENSGT00940000158203
painted turtle	MODERN SPECIES	783										ENSCPBG00000024365	TMEM26 (ENSCPBG00000024368)	ENSCPBG00000024370	ENSCPBG00000024371	CDNF (ENSCPBG00000024372) #19	HSPA14 (ENSCPBG00000024375) #21	SUV39H2 (ENSCPBG00000024379) #22	DCLRE1C (ENSCPBG00000024388) #23	MEIG1 (ENSCPBG00000024522)	ENSCPBG00000024523	DMTF1 (ENSCPBG00000024527)	ELAPOR2 (ENSCPBG00000024531)	GRM3 (ENSCPBG00000024532)	ENSCPBG00000024537	SEMA3D (ENSCPBG00000024538)	SEMA3A (ENSCPBG00000024542)	SEMA3E (ENSCPBG00000024546)	ENSCPBG00000024551
Three-toed box turtle	MODERN SPECIES	28	CDC123 (ENSTMTG00000011558)	CAMK1D (ENSTMTG00000011571)	ENSTMTG00000011636	CCDC3 (ENSTMTG00000011648)	OPTN (ENSTMTG00000000083)	MCM10 (ENSTMTG00000000112)	UCMA (ENSTMTG00000000140)	PHYH (ENSTMTG00000000163)	SEPHS1 (ENSTMTG00000000191) #11	BEND7 (ENSTMTG00000000216)	PRPF18 (ENSTMTG00000000231) #13	FRMD4A (ENSTMTG00000000257) #14	FAM107B (ENSTMTG00000000291) #17	CDNF (ENSTMTG00000000316) #19	HSPA14 (ENSTMTG00000000352) #21	SUV39H2 (ENSTMTG00000000369) #22	DCLRE1C (ENSTMTG00000000394) #23	MEIG1 (ENSTMTG00000000415)	TMEM243 (ENSTMTG00000000431)	DMTF1 (ENSTMTG00000000455)	ELAPOR2 (ENSTMTG00000000504)	GRM3 (ENSTMTG00000000548)	ENSTMTG00000000573	SEMA3A (ENSTMTG00000000604)	ENSTMTG00000000630	SEMA3E (ENSTMTG00000000664)	ENSTMTG00000000721	ENSTMTG00000000732	ENSTMTG00000000741	CACNA2D1 (ENSTMTG00000001094)	HGF (ENSTMTG00000002480)
Chinese turtle	MODERN SPECIES	626	CAMK1D (ENSPSIG00000015669)	ENSPSIG00000015743	CCDC3 (ENSPSIG00000015767)	OPTN (ENSPSIG00000015775)	MCM10 (ENSPSIG00000015863)	UCMA (ENSPSIG00000015878)	PHYH (ENSPSIG00000015885)	SEPHS1 (ENSPSIG00000015980) #11	BEND7 (ENSPSIG00000016036)	ENSPSIG00000016044	PRPF18 (ENSPSIG00000016064) #13	FRMD4A (ENSPSIG00000016124) #14	FAM107B (ENSPSIG00000016195) #17	CDNF (ENSPSIG00000016209) #19	HSPA14 (ENSPSIG00000016234) #21	SUV39H2 (ENSPSIG00000016296) #22	DCLRE1C (ENSPSIG00000016323) #23	MEIG1 (ENSPSIG00000016426)	TMEM243 (ENSPSIG00000016433)	DMTF1 (ENSPSIG00000016443)	ELAPOR2 (ENSPSIG00000016696)	GRM3 (ENSPSIG00000017007)	SEMA3D (ENSPSIG00000017076)	SEMA3A (ENSPSIG00000017229)	SEMA3E (ENSPSIG00000017343)	PCLO (ENSPSIG00000017468)	CACNA2D1 (ENSPSIG00000017544)	HGF (ENSPSIG00000017809)	ENSPSIG00000000973	SEMA3C (ENSPSIG00000018011)	CD36 (ENSPSIG00000018200)
Lepidosauria	ANCESTRAL SPECIES	67	ENSGT00940000154045.a	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00940000163804	ENSGT00390000015073 #13	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a
tuatara	MODERN SPECIES	1484													FAM107B (ENSSPUG00000012206) #17	CDNF (ENSSPUG00000012198) #19	HSPA14 (ENSSPUG00000012185) #21	SUV39H2 (ENSSPUG00000012168) #22	DCLRE1C (ENSSPUG00000012141) #23	MEIG1 (ENSSPUG00000012124)	TMEM243 (ENSSPUG00000012107)	DMTF1 (ENSSPUG00000012063)	ELAPOR2 (ENSSPUG00000012033)	GRM3 (ENSSPUG00000012012)
Anura	ANCESTRAL SPECIES	5	ENSGT00390000003057	ENSGT00940000156776	ENSGT00390000014429.b	ENSGT00530000063808.b	ENSGT00940000161474.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B	ENSGT00390000000950.c.b #11	ENSGT00390000015073 #13	ENSGT00940000163804	ENSGT01020000230354.A.b #14	ENSGT00390000011228.b.b #17	ENSGT00390000007160.a.b #19	ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000163878	ENSGT00940000159379	ENSGT00940000153372.A.f
Leishan spiny toad	MODERN SPECIES	6	MCM10 (ENSLLEG00000016225)	UCMA (ENSLLEG00000016441)	ENSLLEG00000016513	ENSLLEG00000016731	ENSLLEG00000016798	SEPHS1 (ENSLLEG00000016818) #11	ENSLLEG00000017043	BEND7 (ENSLLEG00000017310)	ENSLLEG00000017622	ENSLLEG00000017673 #13	ENSLLEG00000017962	FRMD4A (ENSLLEG00000018051) #14	FAM107B (ENSLLEG00000014198) #17	CDNF (ENSLLEG00000014288) #19	HSPA14 (ENSLLEG00000014377) #21	SUV39H2 (ENSLLEG00000014615) #22	DCLRE1C (ENSLLEG00000014674) #23	MEIG1 (ENSLLEG00000014762)	ENSLLEG00000014793	ENSLLEG00000014860	DMTF1 (ENSLLEG00000014930)	ELAPOR2 (ENSLLEG00000015426)	GRM3 (ENSLLEG00000015613)	ENSLLEG00000015693	ENSLLEG00000015727	SEMA3D (ENSLLEG00000015757)	ENSLLEG00000015914	SEMA3A (ENSLLEG00000015937)	ENSLLEG00000016241	SEMA3E (ENSLLEG00000016288)	ENSLLEG00000016426
Frog	MODERN SPECIES	3	nudt5 (ENSXETG00000021953)	ENSXETG00000036689	camk1d (ENSXETG00000009109)	ccdc3 (ENSXETG00000027466)	optn (ENSXETG00000009111)	ENSXETG00000039420	hspa14 (ENSXETG00000009112) #21	mcm10 (ENSXETG00000009113)	ucma (ENSXETG00000009114)	phyh (ENSXETG00000009115)	sephs1 (ENSXETG00000009116) #11	bend7 (ENSXETG00000009117)	frmd4a (ENSXETG00000009118) #14	fam107b (ENSXETG00000009120) #17	cdnf (ENSXETG00000036790) #19	suv39h2 (ENSXETG00000005401) #22	dclre1c (ENSXETG00000005403) #23	meig1 (ENSXETG00000005411)	ENSXETG00000040465	vwa5a.2 (ENSXETG00000005412)	elapor2 (ENSXETG00000005417)	grm3 (ENSXETG00000005426)	sema3d (ENSXETG00000005431)	ENSXETG00000035884	sema3a (ENSXETG00000014232)	sema3e (ENSXETG00000031133)	ENSXETG00000046441	pclo (ENSXETG00000014217)	cacna2d1 (ENSXETG00000007868)	ENSXETG00000044410	hgf (ENSXETG00000007872)
Coelacanth	MODERN SPECIES	3622																SUV39H2 (ENSLACG00000002434) #22
Elephant shark	MODERN SPECIES	328																SUV39H2 (ENSCMIG00000002274) #22
Cyclostomata	ANCESTRAL SPECIES	37															ENSGT00940000156380 #21	ENSGT00940000156788 #22	ENSGT00940000157779 #23	ENSGT00390000013550	ENSGT00940000154983.c.b.a
Lamprey	MODERN SPECIES	7												ENSPMAG00000003557 ##17	ENSPMAG00000003561	hspa14 (ENSPMAG00000003568) #21	ENSPMAG00000003612	SUV39H2 (ENSPMAG00000003617) #22	dclre1c (ENSPMAG00000003628) #23	meig1 (ENSPMAG00000003682)	ENSPMAG00000003686	ENSPMAG00000003719	ENSPMAG00000003782	ENSPMAG00000003795	ENSPMAG00000003832	ENSPMAG00000003839	ENSPMAG00000003845	ENSPMAG00000003846	ENSPMAG00000004009	ENSPMAG00000004026	ENSPMAG00000004041	MON2 (ENSPMAG00000004049)	ENSPMAG00000004091
Hagfish	MODERN SPECIES	1164									ENSEBUG00000010900	ENSEBUG00000005581	THOC7 (ENSEBUG00000006746)	ENSEBUG00000014011	ENSEBUG00000002550	ENSEBUG00000004009	ENSEBUG00000004479	SUV39H2 (ENSEBUG00000010145) #22	ENSEBUG00000008516 #23	ENSEBUG00000002160	ENSEBUG00000003111
Ciona	ANCESTRAL SPECIES	306													ENSGT00940000153467	ENSGT00390000003444	ENSGT00530000067791	ENSGT00940000156788 #22
Ciona savignyi	DUPLICATION
Ciona savignyi	MODERN SPECIES	41											ENSCSAVG00000002746	ENSCSAVG00000002736	ENSCSAVG00000002733	ENSCSAVG00000002730	ENSCSAVG00000002725	ENSCSAVG00000002652 #22	ENSCSAVG00000002645 #22	ENSCSAVG00000002608	ENSCSAVG00000002604	ENSCSAVG00000002601	ENSCSAVG00000002598	ENSCSAVG00000002593	ENSCSAVG00000002589	ENSCSAVG00000002583	ENSCSAVG00000002574	ENSCSAVG00000002569	ENSCSAVG00000002566	ENSCSAVG00000002563
Ciona savignyi	MODERN SPECIES	41										ENSCSAVG00000002746	ENSCSAVG00000002736	ENSCSAVG00000002733	ENSCSAVG00000002730	ENSCSAVG00000002725	ENSCSAVG00000002652 #22	ENSCSAVG00000002645 #22	ENSCSAVG00000002608	ENSCSAVG00000002604	ENSCSAVG00000002601	ENSCSAVG00000002598	ENSCSAVG00000002593	ENSCSAVG00000002589	ENSCSAVG00000002583	ENSCSAVG00000002574	ENSCSAVG00000002569	ENSCSAVG00000002566	ENSCSAVG00000002563
Ciona intestinalis	MODERN SPECIES	122	ENSCING00000020981	ENSCING00000000757	ENSCING00000013384	ENSCING00000013385	ENSCING00000000769	ENSCING00000022204	ENSCING00000020868	ENSCING00000000752	ENSCING00000013383	ENSCING00000010138	ENSCING00000022799	ENSCING00000021047	ENSCING00000000744	ENSCING00000000741	ENSCING00000013382	ENSCING00000000736 #22	ENSCING00000018008	ENSCING00000001387	ENSCING00000000730	ENSCING00000000724	ENSCING00000000707	ENSCING00000019932	ENSCING00000013381	ENSCING00000020733	ENSCING00000025169	ENSCING00000022380	ENSCING00000023946	ENSCING00000005584	ENSCING00000019348	ENSCING00000019183	ENSCING00000010491