Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408	ENSGT00390000008808	ENSGT01050000245125	ENSGT00940000156258	ENSGT00940000159934	ENSGT00940000161744	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00500000044929	ENSGT00940000155823.B	ENSGT00940000158843	ENSGT00440000037341.a	ENSGT00940000160910 #22	ENSGT00390000017627.a #23	ENSGT00940000159330 #24	ENSGT00950000183095.a.b.a.b.b #25	ENSGT00390000006205.a #26	ENSGT00440000039029 #27	ENSGT00940000160736 #28	ENSGT00940000159084 #29	ENSGT00500000045333 #30	ENSGT00390000006395 #31	ENSGT00390000001588 #32	ENSGT00950000183024.a.a.b #33	ENSGT00390000003107.a #34	ENSGT00940000157736 #35	ENSGT00960000187289	ENSGT00940000163796 #36
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408	ENSGT00390000008808	ENSGT01050000245125	ENSGT00940000156258	ENSGT00940000159934	ENSGT00940000161744	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00500000044929	ENSGT00940000155823.B	ENSGT00940000158843	ENSGT00440000037341.a	ENSGT00940000160910 #22	ENSGT00390000017627.a #23	ENSGT00940000159330 #24	ENSGT00950000183095.a.b.a.b.b #25	ENSGT00390000006205.a #26	ENSGT00440000039029 #27	ENSGT00940000160736 #28	ENSGT00940000159084 #29	ENSGT00500000045333 #30	ENSGT00390000006395 #31	ENSGT00390000001588 #32	ENSGT00950000183024.a.a.b #33	ENSGT00390000003107.a #34	ENSGT00940000157736 #35	ENSGT00960000187289	ENSGT00940000163796 #36
Marmotini	ANCESTRAL SPECIES	14	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408	ENSGT00390000008808.c	ENSGT01050000245125	ENSGT00940000156258	ENSGT00940000159934	ENSGT00940000161744	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00390000006305.f	ENSGT00500000044929	ENSGT00940000155823.B	ENSGT00940000158843	ENSGT00440000037341.a	ENSGT00940000160910 #22	ENSGT00390000017627.a #23	ENSGT00940000159330 #24	ENSGT00950000183095.a.b.a.b.b #25	ENSGT00390000006205.a #26	ENSGT00440000039029 #27	ENSGT00940000160736 #28	ENSGT00940000159084 #29	ENSGT00500000045333 #30	ENSGT00390000006395 #31	ENSGT00390000001588 #32	ENSGT00950000183024.a.a.b #33	ENSGT00390000003107.a #34	ENSGT00940000157736 #35	ENSGT00940000163796 #36	ENSGT00950000182992.a.b.a.a #37
Marmotini_b	ANCESTRAL SPECIES	204																ENSGT00940000160910 #22	ENSGT00390000017627.a #23	ENSGT00940000159330 #24	ENSGT00950000183095.a.b.a.b.b #25	ENSGT00390000006205.a #26	ENSGT00440000039029 #27	ENSGT00940000160736 #28	ENSGT00940000159084 #29	ENSGT00500000045333.y #30	ENSGT00390000006395 #31	ENSGT00390000001588 #32	ENSGT00950000183024.a.a.b #33	ENSGT00390000003107.a #34	ENSGT00940000157736 #35	ENSGT00940000163796 #36	ENSGT00950000182992.a.b.a.a #37
Arctic ground squirrel	MODERN SPECIES	327																CRIM1 (ENSUPAG00010005656) #22	FEZ2 (ENSUPAG00010005562) #23	VIT (ENSUPAG00010005551) #24	STRN (ENSUPAG00010004813) #25	HEATR5B (ENSUPAG00010004764) #26	GPATCH11 (ENSUPAG00010004751) #27	EIF2AK2 (ENSUPAG00010004729) #28	SULT6B1 (ENSUPAG00010004719) #29	ENSUPAG00010004713 #30	CEBPZ (ENSUPAG00010004700) #31	NDUFAF7 (ENSUPAG00010004685) #32	PRKD3 (ENSUPAG00010004617) #33	QPCT (ENSUPAG00010004595) #34	CDC42EP3 (ENSUPAG00010004593) #35	ENSUPAG00010004589 #36	RMDN2 (ENSUPAG00010004565) #37
Squirrel	MODERN SPECIES	263																CRIM1 (ENSSTOG00000004922) #22	FEZ2 (ENSSTOG00000023774) #23	VIT (ENSSTOG00000025435) #24	STRN (ENSSTOG00000013797) #25	HEATR5B (ENSSTOG00000013857) #26	GPATCH11 (ENSSTOG00000013881) #27	EIF2AK2 (ENSSTOG00000013886) #28	SULT6B1 (ENSSTOG00000013894) #29	CEBPZOS (ENSSTOG00000033312) #30	CEBPZ (ENSSTOG00000026177) #31	NDUFAF7 (ENSSTOG00000013897) #32	PRKD3 (ENSSTOG00000013902) #33	QPCT (ENSSTOG00000011658) #34	CDC42EP3 (ENSSTOG00000013511) #35	RMDN2 (ENSSTOG00000023154) #37	CYP1B1 (ENSSTOG00000001650)
Alpin marmot	MODERN SPECIES	6	EHD3 (ENSMMMG00000018998)	XDH (ENSMMMG00000018970)	SRD5A2 (ENSMMMG00000018968)	MEMO1 (ENSMMMG00000018930)	ENSMMMG00000018887	SPAST (ENSMMMG00000018838)	SLC30A6 (ENSMMMG00000018819)	NLRC4 (ENSMMMG00000018816)	YIPF4 (ENSMMMG00000018753)	BIRC6 (ENSMMMG00000018677)	ENSMMMG00000018644	TTC27 (ENSMMMG00000018618)	LTBP1 (ENSMMMG00000018556)	RASGRP3 (ENSMMMG00000018522)	FAM98A (ENSMMMG00000018506)	CRIM1 (ENSMMMG00000018434) #22	FEZ2 (ENSMMMG00000018399) #23	VIT (ENSMMMG00000018350) #24	STRN (ENSMMMG00000017653) #25	HEATR5B (ENSMMMG00000017586) #26	GPATCH11 (ENSMMMG00000017576) #27	EIF2AK2 (ENSMMMG00000017268) #28	SULT6B1 (ENSMMMG00000017259) #29	CEBPZOS (ENSMMMG00000017252) #30	CEBPZ (ENSMMMG00000017245) #31	NDUFAF7 (ENSMMMG00000017232) #32	ENSMMMG00000017166 #33	QPCT (ENSMMMG00000017135) #34	ENSMMMG00000017085	CDC42EP3 (ENSMMMG00000017082) #35	ENSMMMG00000017075 #36
Eurasian red squirrel	MODERN SPECIES	5	XDH (ENSSVLG00005024759)	SRD5A2 (ENSSVLG00005024728)	MEMO1 (ENSSVLG00005024673)	DPY30 (ENSSVLG00005024637)	ENSSVLG00005024614	ENSSVLG00005024266	SLC30A6 (ENSSVLG00005024101)	NLRC4 (ENSSVLG00005024010)	YIPF4 (ENSSVLG00005023974)	BIRC6 (ENSSVLG00005021693)	TTC27 (ENSSVLG00005021475)	LTBP1 (ENSSVLG00005020250)	RASGRP3 (ENSSVLG00005020068)	FAM98A (ENSSVLG00005019999)	ENSSVLG00005019964	CRIM1 (ENSSVLG00005019815) #22	ENSSVLG00005019685	FEZ2 (ENSSVLG00005019615) #23	VIT (ENSSVLG00005019081) #24	STRN (ENSSVLG00005018617) #25	HEATR5B (ENSSVLG00005018556) #26	GPATCH11 (ENSSVLG00005018465) #27	EIF2AK2 (ENSSVLG00005018363) #28	SULT6B1 (ENSSVLG00005018225) #29	ENSSVLG00005018164 #30	CEBPZ (ENSSVLG00005017972) #31	NDUFAF7 (ENSSVLG00005017759) #32	ENSSVLG00005017699	PRKD3 (ENSSVLG00005017657) #33	QPCT (ENSSVLG00005017543) #34	CDC42EP3 (ENSSVLG00005017521) #35
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00940000160421	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408	ENSGT00390000008808	ENSGT00940000156258	ENSGT00940000159934	ENSGT00940000161744	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00500000044929	ENSGT00940000155823.B	ENSGT00940000158843	ENSGT00440000037341.a	ENSGT00940000160910 #22	ENSGT00390000017627.a #23	ENSGT00940000159330 #24	ENSGT00950000183095.a.b.a.b.b #25	ENSGT00390000006205.a #26	ENSGT00440000039029 #27	ENSGT00940000160736 #28	ENSGT00940000159084 #29	ENSGT00500000045333 #30	ENSGT00390000006395 #31	ENSGT00390000001588 #32	ENSGT00950000183024.a.a.b #33	ENSGT00390000003107.a #34	ENSGT00940000157736 #35	ENSGT00950000182992.a.b.a.a #37	ENSGT01090000263341
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000013628	ENSHGLG00000047365	ENSHGLG00000017850	ENSHGLG00000045168	ENSHGLG00000006723	ENSHGLG00000011801	ENSHGLG00000013582	ENSHGLG00000044801	ENSHGLG00000046438	ENSHGLG00000014990	ENSHGLG00000006761	ENSHGLG00000007155	ENSHGLG00000013463	ENSHGLG00000009146	ENSHGLG00000011555	ENSHGLG00000018264 #22	ENSHGLG00000015023 #23	VIT (ENSHGLG00000017798) #24	STRN (ENSHGLG00000015041) #25	HEATR5B (ENSHGLG00000014542) #26	ENSHGLG00000009502 #27	EIF2AK2 (ENSHGLG00000013093) #28	ENSHGLG00000048150	SULT6B1 (ENSHGLG00000007096) #29	ENSHGLG00000009444 #30	CEBPZ (ENSHGLG00000012838) #31	NDUFAF7 (ENSHGLG00000005543) #32	PRKD3 (ENSHGLG00000008644) #33	QPCT (ENSHGLG00000015088) #34	ENSHGLG00000035469	ENSHGLG00000021117
Hystricomorpha_a	ANCESTRAL SPECIES	31	ENSGT00940000160421	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408	ENSGT00390000008808	ENSGT00940000156258	ENSGT00940000159934	ENSGT00940000161744	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00500000044929	ENSGT00940000155823.B	ENSGT00940000158843	ENSGT00440000037341.a	ENSGT00940000160910 #22	ENSGT00390000017627.a #23	ENSGT00940000159330 #24	ENSGT00950000183095.a.b.a.b.b #25	ENSGT00390000006205.a #26	ENSGT00440000039029 #27	ENSGT00940000160736 #28	ENSGT00940000159084 #29	ENSGT00500000045333 #30	ENSGT00390000006395 #31	ENSGT00390000001588 #32	ENSGT00950000183024.a.a.b #33	ENSGT00390000003107.a #34	ENSGT00940000157736 #35	ENSGT00950000182992.a.b.a.a #37	ENSGT00950000183037.B.a
Guinea pig	MODERN SPECIES	18	XDH (ENSCPOG00000005074)	SRD5A2 (ENSCPOG00000023716)	ENSCPOG00000025603	MEMO1 (ENSCPOG00000012278)	DPY30 (ENSCPOG00000006349)	SPAST (ENSCPOG00000008815)	SLC30A6 (ENSCPOG00000036174)	NLRC4 (ENSCPOG00000008148)	YIPF4 (ENSCPOG00000037032)	BIRC6 (ENSCPOG00000013371)	TTC27 (ENSCPOG00000000166)	LTBP1 (ENSCPOG00000007011)	RASGRP3 (ENSCPOG00000002062)	FAM98A (ENSCPOG00000002065)	ENSCPOG00000019281	CRIM1 (ENSCPOG00000009397) #22	FEZ2 (ENSCPOG00000009413) #23	VIT (ENSCPOG00000012173) #24	STRN (ENSCPOG00000012176) #25	HEATR5B (ENSCPOG00000012179) #26	GPATCH11 (ENSCPOG00000012194) #27	EIF2AK2 (ENSCPOG00000012198) #28	SULT6B1 (ENSCPOG00000012204) #29	CEBPZOS (ENSCPOG00000036822) #30	CEBPZ (ENSCPOG00000020778) #31	NDUFAF7 (ENSCPOG00000021066) #32	PRKD3 (ENSCPOG00000012206) #33	QPCT (ENSCPOG00000012212) #34	CDC42EP3 (ENSCPOG00000033770) #35	RMDN2 (ENSCPOG00000021133) #37	CYP1B1 (ENSCPOG00000030721)
Hystricomorpha_b	ANCESTRAL SPECIES	26	ENSGT00940000158182	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408	ENSGT00390000008808	ENSGT00940000156258	ENSGT00940000159934	ENSGT00940000161744	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00500000044929	ENSGT00940000155823.B	ENSGT00940000158843	ENSGT00440000037341.a	ENSGT00940000160910 #22	ENSGT00390000017627.a #23	ENSGT00940000159330 #24	ENSGT00950000183095.a.b.a.b.b #25	ENSGT00390000006205.a #26	ENSGT00440000039029 #27	ENSGT00940000160736 #28	ENSGT00940000159084 #29	ENSGT00500000045333 #30	ENSGT00390000006395 #31	ENSGT00390000001588 #32	ENSGT00950000183024.a.a.b #33	ENSGT00390000003107.a #34	ENSGT00940000157736 #35	ENSGT00950000182992.a.b.a.a #37	ENSGT00950000183037.B.a
Long-tailed chinchilla	MODERN SPECIES	148			SRD5A2 (ENSCLAG00000004854)	MEMO1 (ENSCLAG00000004990)	DPY30 (ENSCLAG00000005066)	SPAST (ENSCLAG00000005426)	SLC30A6 (ENSCLAG00000005442)	NLRC4 (ENSCLAG00000005687)	YIPF4 (ENSCLAG00000006034)	ENSCLAG00000006069	BIRC6 (ENSCLAG00000006515)	TTC27 (ENSCLAG00000003463)	LTBP1 (ENSCLAG00000003769)	RASGRP3 (ENSCLAG00000004010)	FAM98A (ENSCLAG00000004259)	CRIM1 (ENSCLAG00000006586) #22	ENSCLAG00000006903 #23	VIT (ENSCLAG00000006993) #24	STRN (ENSCLAG00000007211) #25	HEATR5B (ENSCLAG00000007347) #26	GPATCH11 (ENSCLAG00000008061) #27	ENSCLAG00000008409 #28	SULT6B1 (ENSCLAG00000008525) #29	CEBPZOS (ENSCLAG00000009294) #30	CEBPZ (ENSCLAG00000009453) #31	NDUFAF7 (ENSCLAG00000017328) #32	PRKD3 (ENSCLAG00000004573) #33	QPCT (ENSCLAG00000004764) #34	CDC42EP3 (ENSCLAG00000004817) #35	ENSCLAG00000004843	RMDN2 (ENSCLAG00000004882) #37
Degu	MODERN SPECIES	61					ENSODEG00000010284	ENSODEG00000009012	SPAST (ENSODEG00000009753)	SLC30A6 (ENSODEG00000008632)	NLRC4 (ENSODEG00000010692)	YIPF4 (ENSODEG00000008923)	BIRC6 (ENSODEG00000008966)	TTC27 (ENSODEG00000010290)	LTBP1 (ENSODEG00000009508)	ENSODEG00000012474	RASGRP3 (ENSODEG00000010417)	CRIM1 (ENSODEG00000011072) #22	FEZ2 (ENSODEG00000011376) #23	VIT (ENSODEG00000012033) #24	STRN (ENSODEG00000009292) #25	HEATR5B (ENSODEG00000009045) #26	GPATCH11 (ENSODEG00000011404) #27	ENSODEG00000019711	ENSODEG00000010489	SULT6B1 (ENSODEG00000009825) #29	ENSODEG00000010503 #30	ENSODEG00000011002 #31	ENSODEG00000011006 #32	PRKD3 (ENSODEG00000010640) #33	ENSODEG00000011270	QPCT (ENSODEG00000009887) #34	ENSODEG00000019986 #35