Murinae	ANCESTRAL SPECIES	8	ENSGT00940000158182 #7	ENSGT00940000159274 #8	ENSGT00950000183114.a.a #9	ENSGT00950000182886.b.a #10	ENSGT00390000006408.r #11	ENSGT00390000008808 #12	ENSGT00940000156258 #13	ENSGT00940000159934 #14	ENSGT00940000161744 #15	ENSGT00940000153168.B #16	ENSGT00940000156126 #17	ENSGT00500000044929 #18	ENSGT00940000155823.B #19	ENSGT00940000158843 #20	ENSGT00440000037341.a #21	ENSGT00940000160910 #22	ENSGT00390000017627.a #23	ENSGT00940000159330 #24	ENSGT00950000183095.a.b.a.b.b #25	ENSGT00390000006205.a #26	ENSGT00440000039029 #27	ENSGT00940000160736 #28	ENSGT00940000159084 #29	ENSGT00500000045333 #30	ENSGT00390000006395 #31	ENSGT00390000001588 #32	ENSGT00950000183024.a.a.b #33	ENSGT00390000003107.a #34	ENSGT00940000157736 #35	ENSGT00940000163796 #37	ENSGT00950000182992.a.b.a.a #36
Mus	ANCESTRAL SPECIES	16	ENSGT00940000158182 #7	ENSGT00940000159274 #8	ENSGT00950000183114.a.a #9	ENSGT00950000182886.b.a #10	ENSGT00390000006408.r #11	ENSGT00390000008808 #12	ENSGT00940000156258 #13	ENSGT00940000159934 #14	ENSGT00940000161744 #15	ENSGT00940000153168.B #16	ENSGT00940000156126 #17	ENSGT00500000044929 #18	ENSGT00940000155823.B #19	ENSGT00940000158843 #20	ENSGT00440000037341.a #21	ENSGT00940000160910 #22	ENSGT00390000017627.a #23	ENSGT00940000159330 #24	ENSGT00950000183095.a.b.a.b.b #25	ENSGT00390000006205.a #26	ENSGT00440000039029 #27	ENSGT00940000160736 #28	ENSGT00940000159084 #29	ENSGT00500000045333 #30	ENSGT00390000006395 #31	ENSGT00390000001588 #32	ENSGT00950000183024.a.a.b #33	ENSGT00390000003107.a #34	ENSGT00940000157736 #35	ENSGT00950000182992.a.b.a.a #36	ENSGT00950000183037.B.a
Shrew mouse	MODERN SPECIES	9	Galnt14 (MGP_PahariEiJ_G0020856) #7	Ehd3 (MGP_PahariEiJ_G0020857) #8	Xdh (MGP_PahariEiJ_G0020858) #9	Srd5a2 (MGP_PahariEiJ_G0020859) #10	Memo1 (MGP_PahariEiJ_G0020860) #11	Dpy30 (MGP_PahariEiJ_G0020861) #12	MGP_PahariEiJ_G0020862 #13	Slc30a6 (MGP_PahariEiJ_G0020863) #14	Nlrc4 (MGP_PahariEiJ_G0020864) #15	Yipf4 (MGP_PahariEiJ_G0020865) #16	Birc6 (MGP_PahariEiJ_G0020866) #17	MGP_PahariEiJ_G0020867 #18	Ltbp1 (MGP_PahariEiJ_G0020868) #19	Rasgrp3 (MGP_PahariEiJ_G0020869) #20	Fam98a (MGP_PahariEiJ_G0020870) #21	Crim1 (MGP_PahariEiJ_G0020871) #22	Fez2 (MGP_PahariEiJ_G0020872) #23	Vit (MGP_PahariEiJ_G0020873) #24	Strn (MGP_PahariEiJ_G0020874) #25	Heatr5b (MGP_PahariEiJ_G0020875) #26	Gpatch11 (MGP_PahariEiJ_G0020876) #27	Eif2ak2 (MGP_PahariEiJ_G0020877) #28	Sult6b1 (MGP_PahariEiJ_G0020878) #29	Cebpzos (MGP_PahariEiJ_G0020879) #30	MGP_PahariEiJ_G0020880 #31	Ndufaf7 (MGP_PahariEiJ_G0020881) #32	Prkd3 (MGP_PahariEiJ_G0020882) #33	Qpct (MGP_PahariEiJ_G0020883) #34	Cdc42ep3 (MGP_PahariEiJ_G0020884) #35	Rmdn2 (MGP_PahariEiJ_G0020885) #36	MGP_PahariEiJ_G0020886 #37
Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000158182 #7	ENSGT00940000159274 #8	ENSGT00950000183114.a.a #9	ENSGT00950000182886.b.a #10	ENSGT00390000006408.r #11	ENSGT00390000008808 #12	ENSGT00940000156258 #13	ENSGT00940000159934 #14	ENSGT00940000161744 #15	ENSGT00940000153168.B #16	ENSGT00940000156126 #17	ENSGT00500000044929 #18	ENSGT00940000155823.B #19	ENSGT00940000158843 #20	ENSGT00440000037341.a #21	ENSGT00940000160910 #22	ENSGT00390000017627.a #23	ENSGT00940000159330 #24	ENSGT00950000183095.a.b.a.b.b #25	ENSGT00390000006205.a #26	ENSGT00440000039029 #27	ENSGT00940000160736 #28	ENSGT00940000159084 #29	ENSGT00500000045333.o #30	ENSGT00390000006395 #31	ENSGT00390000001588 #32	ENSGT00950000183024.a.a.b #33	ENSGT00390000003107.a #34	ENSGT00940000157736 #35	ENSGT00950000182992.a.b.a.a #36	ENSGT00950000183037.B.a
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000158182 #7	ENSGT00940000159274 #8	ENSGT00950000183114.a.a #9	ENSGT00950000182886.b.a #10	ENSGT00390000006408.r #11	ENSGT00390000008808 #12	ENSGT00940000156258 #13	ENSGT00940000159934 #14	ENSGT00940000161744 #15	ENSGT00940000153168.B #16	ENSGT00940000156126 #17	ENSGT00500000044929 #18	ENSGT00940000155823.B #19	ENSGT00940000158843 #20	ENSGT00440000037341.a #21	ENSGT00940000160910 #22	ENSGT00390000017627.a #23	ENSGT00940000159330 #24	ENSGT00950000183095.a.b.a.b.b #25	ENSGT00390000006205.a #26	ENSGT00440000039029 #27	ENSGT00940000160736 #28	ENSGT00940000159084 #29	ENSGT00500000045333.o #30	ENSGT00390000006395 #31	ENSGT00390000001588 #32	ENSGT00950000183024.a.a.b #33	ENSGT00390000003107.a #34	ENSGT00940000157736 #35	ENSGT00950000182992.a.b.a.a #36	ENSGT00950000183037.B.a
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000159274 #8	ENSGT00950000183114.a.a #9	ENSGT00950000182886.b.a #10	ENSGT00390000006408.q.b ##11	ENSGT00390000006408.r #11	ENSGT00390000008808 #12	ENSGT00940000156258 #13	ENSGT00940000159934 #14	ENSGT00940000161744 #15	ENSGT00940000153168.B #16	ENSGT00940000156126 #17	ENSGT00500000044929 #18	ENSGT00940000155823.B #19	ENSGT00940000158843 #20	ENSGT00440000037341.a #21	ENSGT00940000160910 #22	ENSGT00390000017627.a #23	ENSGT00940000159330 #24	ENSGT00950000183095.a.b.a.b.b #25	ENSGT00390000006205.a #26	ENSGT00440000039029 #27	ENSGT00940000160736 #28	ENSGT00940000159084 #29	ENSGT00500000045333.o #30	ENSGT00390000006395 #31	ENSGT00390000001588 #32	ENSGT00950000183024.a.a.b #33	ENSGT00390000003107.a #34	ENSGT00940000157736 #35	ENSGT00940000163796 #37	ENSGT00950000182992.a.b.a.a #36
Steppe mouse	MODERN SPECIES	2620																Crim1 (ENSMSIG00000028861) #22	Fez2 (ENSMSIG00000028884) #23	ENSMSIG00000028899	ENSMSIG00000028905
spretus	MODERN SPECIES	8	Galnt14 (MGP_SPRETEiJ_G0022781) #7	Ehd3 (MGP_SPRETEiJ_G0022782) #8	Xdh (MGP_SPRETEiJ_G0022783) #9	Srd5a2 (MGP_SPRETEiJ_G0022784) #10	Memo1 (MGP_SPRETEiJ_G0022785) ##11	Dpy30 (MGP_SPRETEiJ_G0022786) #12	Spast (MGP_SPRETEiJ_G0022787) #13	Slc30a6 (MGP_SPRETEiJ_G0022788) #14	Nlrc4 (MGP_SPRETEiJ_G0022789) #15	Yipf4 (MGP_SPRETEiJ_G0022790) #16	Birc6 (MGP_SPRETEiJ_G0022791) #17	Ttc27 (MGP_SPRETEiJ_G0022792) #18	Ltbp1 (MGP_SPRETEiJ_G0022793) #19	Rasgrp3 (MGP_SPRETEiJ_G0022794) #20	Fam98a (MGP_SPRETEiJ_G0022795) #21	Crim1 (MGP_SPRETEiJ_G0022796) #22	Fez2 (MGP_SPRETEiJ_G0022797) #23	Vit (MGP_SPRETEiJ_G0022798) #24	Strn (MGP_SPRETEiJ_G0022799) #25	Heatr5b (MGP_SPRETEiJ_G0022800) #26	Gpatch11 (MGP_SPRETEiJ_G0022801) #27	Eif2ak2 (MGP_SPRETEiJ_G0022803) #28	Sult6b1 (MGP_SPRETEiJ_G0022804) #29	Cebpzos (MGP_SPRETEiJ_G0022805) #30	Cebpz (MGP_SPRETEiJ_G0022806) #31	Ndufaf7 (MGP_SPRETEiJ_G0022807) #32	Prkd3 (MGP_SPRETEiJ_G0022808) #33	Qpct (MGP_SPRETEiJ_G0022809) #34	Cdc42ep3 (MGP_SPRETEiJ_G0022810) #35	Rmdn2 (MGP_SPRETEiJ_G0022811) #36	MGP_SPRETEiJ_G0022812 #37
Mouse	MODERN SPECIES	8	Galnt14 (ENSMUSG00000024064) #7	Ehd3 (ENSMUSG00000024065) #8	Xdh (ENSMUSG00000024066) #9	Srd5a2 (ENSMUSG00000038541) #10	Memo1 (ENSMUSG00000058704) #11	Dpy30 (ENSMUSG00000024067) #12	Spast (ENSMUSG00000024068) #13	Slc30a6 (ENSMUSG00000024069) #14	Nlrc4 (ENSMUSG00000039193) #15	Yipf4 (ENSMUSG00000024072) #16	Birc6 (ENSMUSG00000024073) #17	Ttc27 (ENSMUSG00000024078) #18	Ltbp1 (ENSMUSG00000001870) #19	Rasgrp3 (ENSMUSG00000071042) #20	Fam98a (ENSMUSG00000002017) #21	Crim1 (ENSMUSG00000024074) #22	Fez2 (ENSMUSG00000056121) #23	Vit (ENSMUSG00000024076) #24	Strn (ENSMUSG00000024077) #25	Heatr5b (ENSMUSG00000039414) #26	Gpatch11 (ENSMUSG00000050668) #27	Eif2ak2 (ENSMUSG00000024079) #28	Sult6b1 (ENSMUSG00000038045) #29	Cebpzos (ENSMUSG00000062691) #30	Cebpz (ENSMUSG00000024081) #31	Ndufaf7 (ENSMUSG00000024082) #32	Prkd3 (ENSMUSG00000024070) #33	Qpct (ENSMUSG00000024084) #34	Cdc42ep3 (ENSMUSG00000036533) #35	Rmdn2 (ENSMUSG00000036368) #36	Cyp1b1 (ENSMUSG00000024087)
Ryukyu mouse	MODERN SPECIES	8	Galnt14 (MGP_CAROLIEiJ_G0021869) #7	Ehd3 (MGP_CAROLIEiJ_G0021870) #8	Xdh (MGP_CAROLIEiJ_G0021871) #9	Srd5a2 (MGP_CAROLIEiJ_G0021872) #10	Memo1 (MGP_CAROLIEiJ_G0021873) #11	Dpy30 (MGP_CAROLIEiJ_G0021874) #12	Spast (MGP_CAROLIEiJ_G0021875) #13	MGP_CAROLIEiJ_G0021876 #14	Nlrc4 (MGP_CAROLIEiJ_G0021877) #15	Yipf4 (MGP_CAROLIEiJ_G0021878) #16	Birc6 (MGP_CAROLIEiJ_G0021879) #17	Ttc27 (MGP_CAROLIEiJ_G0021880) #18	Ltbp1 (MGP_CAROLIEiJ_G0021881) #19	Rasgrp3 (MGP_CAROLIEiJ_G0021882) #20	Fam98a (MGP_CAROLIEiJ_G0021883) #21	Crim1 (MGP_CAROLIEiJ_G0021884) #22	Fez2 (MGP_CAROLIEiJ_G0021885) #23	Strn (MGP_CAROLIEiJ_G0021886) #25	MGP_CAROLIEiJ_G0021887 #26	Gpatch11 (MGP_CAROLIEiJ_G0021888) #27	Eif2ak2 (MGP_CAROLIEiJ_G0021889) #28	Cebpzos (MGP_CAROLIEiJ_G0021890) #30	MGP_CAROLIEiJ_G0021891 #31	MGP_CAROLIEiJ_G0021892 #32	Prkd3 (MGP_CAROLIEiJ_G0021893) #33	Qpct (MGP_CAROLIEiJ_G0021894) #34	Cdc42ep3 (MGP_CAROLIEiJ_G0021895) #35	Rmdn2 (MGP_CAROLIEiJ_G0021896) #36	MGP_CAROLIEiJ_G0021897 #37	Cyp1b1 (MGP_CAROLIEiJ_G0021898)	Atl2 (MGP_CAROLIEiJ_G0021899)
Rat	MODERN SPECIES	16	Srd5a2 (ENSRNOG00000027042) #10	Memo1 (ENSRNOG00000006340) ##11	Dpy30 (ENSRNOG00000027126)	ENSRNOG00000066517	Spast (ENSRNOG00000027136) #13	Slc30a6 (ENSRNOG00000005856) #14	Nlrc4 (ENSRNOG00000005810) #15	Yipf4 (ENSRNOG00000005610) #16	Birc6 (ENSRNOG00000027191) #17	Ttc27 (ENSRNOG00000042932) #18	Ltbp1 (ENSRNOG00000033090) #19	Rasgrp3 (ENSRNOG00000032703) #20	Fam98a (ENSRNOG00000030328) #21	ENSRNOG00000062904	ENSRNOG00000067489	Crim1 (ENSRNOG00000004208) #22	Fez2 (ENSRNOG00000004577) #23	Vit (ENSRNOG00000004706) #24	Strn (ENSRNOG00000004806) #25	Heatr5b (ENSRNOG00000025926) #26	Gpatch11 (ENSRNOG00000025317) #27	Eif2ak2 (ENSRNOG00000048315) #28	Sult6b1 (ENSRNOG00000049335) #29	ENSRNOG00000066755	Cebpzos (ENSRNOG00000064368) #30	Cebpz (ENSRNOG00000005087) #31	Ndufaf7 (ENSRNOG00000005279) #32	Prkd3 (ENSRNOG00000005289) #33	Qpct (ENSRNOG00000005705) #34	LOC679690 (ENSRNOG00000062020)	Cdc42ep3 (ENSRNOG00000032136) #35