Gnathostomata	ANCESTRAL SPECIES	1667															ENSGT00940000164611	ENSGT00940000159672 #22
Euteleostomi	ANCESTRAL SPECIES	318								ENSGT00390000002931	ENSGT00950000182936.a.b.b	ENSGT00950000182850.a.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000159868	ENSGT00940000156168.B	ENSGT00940000154078.a.b ##17
Sarcopterygii	ANCESTRAL SPECIES	656														ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095
Tetrapoda	ANCESTRAL SPECIES	39	ENSGT00940000155737.b	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.b	ENSGT00940000162611.a
Amniota	ANCESTRAL SPECIES	10	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.b	ENSGT00940000162611.a
Mammalia	ANCESTRAL SPECIES	14	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Theria	ANCESTRAL SPECIES	26	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Eutheria	ANCESTRAL SPECIES	13	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT00960000190004 #35	ENSGT00730000111092.a.a ##34	ENSGT01050000244965.a #36
Primates	ANCESTRAL SPECIES	16	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT00960000190004 #35	ENSGT00730000111092.a.b ##34	ENSGT01050000244965.a #36
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT00960000190004 #35	ENSGT00730000111092.a.b ##34	ENSGT01050000244965.a #36
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00390000003175.a.a #9	ENSGT00390000000628.w.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.w.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00910000147806	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36
Hominidae	ANCESTRAL SPECIES	13	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.w.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00910000147806	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.w.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00910000147806	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029.c #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.w.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029.c #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Pan	ANCESTRAL SPECIES	16	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.w.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029.c #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Bonobo	MODERN SPECIES	1	SCD (ENSPPAG00000029861) #7	WNT8B (ENSPPAG00000039871) #8	SEC31B (ENSPPAG00000035674) #9	NDUFB8 (ENSPPAG00000025513) #10	HIF1AN (ENSPPAG00000035861) #11	ENSPPAG00000004195 #12	SLF2 (ENSPPAG00000040627) #13	SEMA4G (ENSPPAG00000039460) #14	ENSPPAG00000042828 #15	TWNK (ENSPPAG00000035055) #16	LZTS2 (ENSPPAG00000003235) #17	PDZD7 (ENSPPAG00000036974) #18	SFXN3 (ENSPPAG00000029879) #19	KAZALD1 (ENSPPAG00000029890) #20	TLX1 (ENSPPAG00000040366) #21	BTRC (ENSPPAG00000034237) #22	POLL (ENSPPAG00000036999) #23	DPCD (ENSPPAG00000038194) #24	ENSPPAG00000025691 #25	FGF8 (ENSPPAG00000039985) #26	NPM3 (ENSPPAG00000040517) #27	OGA (ENSPPAG00000030424) #28	KCNIP2 (ENSPPAG00000029455) #29	ARMH3 (ENSPPAG00000040734) #30	HPS6 (ENSPPAG00000011993) #31	LDB1 (ENSPPAG00000024094) #32	PPRC1 (ENSPPAG00000032544) #33	NOLC1 (ENSPPAG00000038082) #34	ENSPPAG00000043390 #35	ELOVL3 (ENSPPAG00000040688) #36	ENSPPAG00000008353 #37
Chimpanzee	MODERN SPECIES	1	WNT8B (ENSPTRG00000002849) #8	SEC31B (ENSPTRG00000002850) #9	NDUFB8 (ENSPTRG00000002851) #10	HIF1AN (ENSPTRG00000002852) #11	PAX2 (ENSPTRG00000002853) #12	SLF2 (ENSPTRG00000002855) #13	SEMA4G (ENSPTRG00000052672) #14	MRPL43 (ENSPTRG00000002858) #15	TWNK (ENSPTRG00000029751) #16	LZTS2 (ENSPTRG00000042870) #17	PDZD7 (ENSPTRG00000002862) #18	SFXN3 (ENSPTRG00000002864) #19	KAZALD1 (ENSPTRG00000002865) #20	TLX1 (ENSPTRG00000002867) #21	LBX1 (ENSPTRG00000002868)	BTRC (ENSPTRG00000002869) #22	POLL (ENSPTRG00000002870) #23	DPCD (ENSPTRG00000002871) #24	FBXW4 (ENSPTRG00000048959) #25	FGF8 (ENSPTRG00000002874) #26	NPM3 (ENSPTRG00000002875) #27	OGA (ENSPTRG00000002876) #28	KCNIP2 (ENSPTRG00000002878) #29	ARMH3 (ENSPTRG00000002879) #30	HPS6 (ENSPTRG00000002881) #31	LDB1 (ENSPTRG00000023411) #32	PPRC1 (ENSPTRG00000002883) #33	NOLC1 (ENSPTRG00000023882) #34	ELOVL3 (ENSPTRG00000002885) #36	PITX3 (ENSPTRG00000002886) #37	GBF1 (ENSPTRG00000002887)
Human	MODERN SPECIES	1	WNT8B (ENSG00000075290) #8	SEC31B (ENSG00000075826) #9	NDUFB8 (ENSG00000166136) #10	HIF1AN (ENSG00000166135) #11	PAX2 (ENSG00000075891) #12	SLF2 (ENSG00000119906) #13	MRPL43 (ENSG00000055950) #15	SEMA4G (ENSG00000095539) #14	TWNK (ENSG00000107815) #16	LZTS2 (ENSG00000107816) #17	PDZD7 (ENSG00000186862) #18	SFXN3 (ENSG00000107819) #19	KAZALD1 (ENSG00000107821) #20	TLX1 (ENSG00000107807) #21	LBX1 (ENSG00000138136)	BTRC (ENSG00000166167) #22	DPCD (ENSG00000166171) #24	POLL (ENSG00000166169) #23	FBXW4 (ENSG00000107829) #25	FGF8 (ENSG00000107831) #26	NPM3 (ENSG00000107833) #27	OGA (ENSG00000198408) #28	KCNIP2 (ENSG00000120049) #29	ARMH3 (ENSG00000120029) #30	HPS6 (ENSG00000166189) #31	LDB1 (ENSG00000198728) #32	PPRC1 (ENSG00000148840) #33	NOLC1 (ENSG00000166197) #34	ELOVL3 (ENSG00000119915) #36	PITX3 (ENSG00000107859) #37	GBF1 (ENSG00000107862)
Gorilla	MODERN SPECIES	1	WNT8B (ENSGGOG00000014634) #8	SEC31B (ENSGGOG00000014643) #9	NDUFB8 (ENSGGOG00000027239) #10	HIF1AN (ENSGGOG00000004308) #11	ENSGGOG00000014908 #12	SLF2 (ENSGGOG00000002070) #13	SEMA4G (ENSGGOG00000025153) #14	ENSGGOG00000023716 #15	TWNK (ENSGGOG00000015421) #16	LZTS2 (ENSGGOG00000015430) #17	PDZD7 (ENSGGOG00000015436) #18	SFXN3 (ENSGGOG00000015442) #19	KAZALD1 (ENSGGOG00000004516) #20	TLX1 (ENSGGOG00000005880) #21	LBX1 (ENSGGOG00000012521)	BTRC (ENSGGOG00000005023) #22	ENSGGOG00000038754	POLL (ENSGGOG00000005029) #23	DPCD (ENSGGOG00000005035) #24	ENSGGOG00000005039 #25	FGF8 (ENSGGOG00000015108) #26	NPM3 (ENSGGOG00000027500) #27	OGA (ENSGGOG00000002901) #28	KCNIP2 (ENSGGOG00000006534) #29	ARMH3 (ENSGGOG00000006539) #30	HPS6 (ENSGGOG00000008892) #31	LDB1 (ENSGGOG00000002151) #32	PPRC1 (ENSGGOG00000002155) #33	NOLC1 (ENSGGOG00000002158) #34	ELOVL3 (ENSGGOG00000024219) #36	PITX3 (ENSGGOG00000026128) #37
Orangutan	MODERN SPECIES	1	WNT8B (ENSPPYG00000002568) #8	SEC31B (ENSPPYG00000002569) #9	NDUFB8 (ENSPPYG00000002570) #10	HIF1AN (ENSPPYG00000002571) #11	ENSPPYG00000002572 #12	SLF2 (ENSPPYG00000002573) #13	SEMA4G (ENSPPYG00000002574) #14	ENSPPYG00000002575 #15	TWNK (ENSPPYG00000002576) #16	LZTS2 (ENSPPYG00000002577) #17	PDZD7 (ENSPPYG00000002578) #18	SFXN3 (ENSPPYG00000002579) #19	KAZALD1 (ENSPPYG00000002580) #20	TLX1 (ENSPPYG00000002581) #21	LBX1 (ENSPPYG00000002582)	BTRC (ENSPPYG00000002583) #22	POLL (ENSPPYG00000002584) #23	DPCD (ENSPPYG00000002585) #24	FBXW4 (ENSPPYG00000002586) #25	ENSPPYG00000002587	FGF8 (ENSPPYG00000002588) #26	NPM3 (ENSPPYG00000002589) #27	OGA (ENSPPYG00000002590) #28	KCNIP2 (ENSPPYG00000002591) #29	ARMH3 (ENSPPYG00000002592) #30	HPS6 (ENSPPYG00000030981) #31	LDB1 (ENSPPYG00000002593) #32	PPRC1 (ENSPPYG00000002594) #33	NOLC1 (ENSPPYG00000002595) #34	ELOVL3 (ENSPPYG00000002596) #36	ENSPPYG00000002597 #37
Gibbon	MODERN SPECIES	18	SEC31B (ENSNLEG00000014765) #9	ENSNLEG00000029318 ##10	HIF1AN (ENSNLEG00000014784) #11	ENSNLEG00000014786 #12	SLF2 (ENSNLEG00000014791) #13	SEMA4G (ENSNLEG00000014804) #14	ENSNLEG00000014812 #15	TWNK (ENSNLEG00000014818) #16	LZTS2 (ENSNLEG00000014822) #17	PDZD7 (ENSNLEG00000014823) #18	SFXN3 (ENSNLEG00000014831) #19	KAZALD1 (ENSNLEG00000035599) #20	TLX1 (ENSNLEG00000029481) #21	LBX1 (ENSNLEG00000014840)	ENSNLEG00000028284	BTRC (ENSNLEG00000014843) #22	POLL (ENSNLEG00000014861) #23	DPCD (ENSNLEG00000014878) #24	ENSNLEG00000014885 #25	FGF8 (ENSNLEG00000014890) #26	ENSNLEG00000029281 #27	OGA (ENSNLEG00000014902) #28	ENSNLEG00000014924 #29	ENSNLEG00000030076	ARMH3 (ENSNLEG00000014964) #30	HPS6 (ENSNLEG00000019112) #31	LDB1 (ENSNLEG00000014982) #32	PPRC1 (ENSNLEG00000014996) #33	NOLC1 (ENSNLEG00000015012) #34	ELOVL3 (ENSNLEG00000015039) #36	PITX3 (ENSNLEG00000015040) #37
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00390000003175.a.a #9	ENSGT00390000000628.w.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Rhinopithecus	ANCESTRAL SPECIES	11	ENSGT00390000003175.a.a #9	ENSGT00390000000628.w.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Black snub-nosed monkey	MODERN SPECIES	1538					SLF2 (ENSRBIG00000027825) #13	SEMA4G (ENSRBIG00000025014) #14	MRPL43 (ENSRBIG00000029374) #15	TWNK (ENSRBIG00000042725) #16	LZTS2 (ENSRBIG00000030156) #17	ENSRBIG00000006061	PDZD7 (ENSRBIG00000030466) #18	SFXN3 (ENSRBIG00000033345) #19	KAZALD1 (ENSRBIG00000029657) #20	TLX1 (ENSRBIG00000028309) #21	LBX1 (ENSRBIG00000043576)	BTRC (ENSRBIG00000000373) #22	POLL (ENSRBIG00000034819) #23	ENSRBIG00000025168	DPCD (ENSRBIG00000029630) #24	FBXW4 (ENSRBIG00000029703) #25	FGF8 (ENSRBIG00000038141) #26	NPM3 (ENSRBIG00000039086) #27	OGA (ENSRBIG00000042557) #28	KCNIP2 (ENSRBIG00000036933) #29	ARMH3 (ENSRBIG00000030224) #30	HPS6 (ENSRBIG00000021408) #31	LDB1 (ENSRBIG00000023954) #32	PPRC1 (ENSRBIG00000027711) #33	NOLC1 (ENSRBIG00000032216) #34	ELOVL3 (ENSRBIG00000025844) #36	PITX3 (ENSRBIG00000035684) #37
Golden snub-nosed monkey	MODERN SPECIES	3053	WNT8B (ENSRROG00000034714) #8	SEC31B (ENSRROG00000036499) #9	NDUFB8 (ENSRROG00000043538) #10	HIF1AN (ENSRROG00000035456) #11	PAX2 (ENSRROG00000036335) #12	SLF2 (ENSRROG00000032382) #13	SEMA4G (ENSRROG00000029089) #14	MRPL43 (ENSRROG00000036241) #15	TWNK (ENSRROG00000034001) #16	LZTS2 (ENSRROG00000044508) #17	PDZD7 (ENSRROG00000042033) #18	SFXN3 (ENSRROG00000042473) #19	KAZALD1 (ENSRROG00000028521) #20	TLX1 (ENSRROG00000044869) #21	LBX1 (ENSRROG00000044455)	BTRC (ENSRROG00000030265) #22	POLL (ENSRROG00000032669) #23	DPCD (ENSRROG00000044275) #24	ENSRROG00000023920	FBXW4 (ENSRROG00000038393) #25	FGF8 (ENSRROG00000038994) #26	NPM3 (ENSRROG00000029912) #27	OGA (ENSRROG00000045455) #28	KCNIP2 (ENSRROG00000029744) #29	ARMH3 (ENSRROG00000032495) #30	HPS6 (ENSRROG00000015252) #31	LDB1 (ENSRROG00000033778) #32	PPRC1 (ENSRROG00000044599) #33	NOLC1 (ENSRROG00000038056) #34	ELOVL3 (ENSRROG00000040217) #36	PITX3 (ENSRROG00000020365) #37
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00390000003175.a.a #9	ENSGT00390000000628.w.a.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Vervet Monkey	MODERN SPECIES	28	WNT8B (ENSCSAG00000005607) #8	SEC31B (ENSCSAG00000005583) #9	NDUFB8 (ENSCSAG00000005572) #10	HIF1AN (ENSCSAG00000005570) #11	PAX2 (ENSCSAG00000005568) #12	SLF2 (ENSCSAG00000005566) #13	SEMA4G (ENSCSAG00000005560) #14	MRPL43 (ENSCSAG00000005558) #15	TWNK (ENSCSAG00000005548) #16	LZTS2 (ENSCSAG00000005545) #17	ENSCSAG00000005544 #18	SFXN3 (ENSCSAG00000005542) #19	KAZALD1 (ENSCSAG00000005540) #20	TLX1 (ENSCSAG00000005535) #21	LBX1 (ENSCSAG00000005532)	BTRC (ENSCSAG00000005528) #22	POLL (ENSCSAG00000005523) #23	DPCD (ENSCSAG00000005519) #24	FBXW4 (ENSCSAG00000005515) #25	FGF8 (ENSCSAG00000005512) #26	NPM3 (ENSCSAG00000005509) #27	OGA (ENSCSAG00000005507) #28	KCNIP2 (ENSCSAG00000005501) #29	ARMH3 (ENSCSAG00000005491) #30	HPS6 (ENSCSAG00000018450) #31	LDB1 (ENSCSAG00000005474) #32	PPRC1 (ENSCSAG00000005471) #33	NOLC1 (ENSCSAG00000005465) #34	ELOVL3 (ENSCSAG00000005460) #36	PITX3 (ENSCSAG00000005456) #37	GBF1 (ENSCSAG00000005450)
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00390000003175.a.a #9	ENSGT00390000000628.w.a.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00390000003175.a.a #9	ENSGT00390000000628.w.a.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Olive baboon	MODERN SPECIES	2	ENSPANG00000021170 #10	HIF1AN (ENSPANG00000021163) #11	PAX2 (ENSPANG00000021132) #12	SLF2 (ENSPANG00000021133) #13	SEMA4G (ENSPANG00000021137) #14	MRPL43 (ENSPANG00000021122) #15	TWNK (ENSPANG00000021123) #16	LZTS2 (ENSPANG00000021126) #17	PDZD7 (ENSPANG00000021127) #18	SFXN3 (ENSPANG00000021121) #19	KAZALD1 (ENSPANG00000021061) #20	TLX1 (ENSPANG00000021063) #21	ENSPANG00000040129	LBX1 (ENSPANG00000021064)	ENSPANG00000045293	BTRC (ENSPANG00000021065) #22	POLL (ENSPANG00000021067) #23	DPCD (ENSPANG00000021068) #24	FBXW4 (ENSPANG00000021059) #25	FGF8 (ENSPANG00000021045) #26	NPM3 (ENSPANG00000021046) #27	OGA (ENSPANG00000021048) #28	KCNIP2 (ENSPANG00000021049) #29	ARMH3 (ENSPANG00000021051) #30	HPS6 (ENSPANG00000004207) #31	LDB1 (ENSPANG00000021043) #32	PPRC1 (ENSPANG00000021042) #33	NOLC1 (ENSPANG00000021014) #34	ELOVL3 (ENSPANG00000021015) #36	PITX3 (ENSPANG00000021020) #37	GBF1 (ENSPANG00000021018)
Cercopithecinae_d	ANCESTRAL SPECIES	57	ENSGT00390000003175.a.a #9	ENSGT00390000000628.w.a.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Sooty mangabey	MODERN SPECIES	598	SEC31B (ENSCATG00000025009) #9	ENSCATG00000012416 #10	HIF1AN (ENSCATG00000013935) #11	PAX2 (ENSCATG00000040463) #12	SLF2 (ENSCATG00000009305) #13	SEMA4G (ENSCATG00000040594) #14	MRPL43 (ENSCATG00000045001) #15	TWNK (ENSCATG00000031735) #16	LZTS2 (ENSCATG00000035009) #17	PDZD7 (ENSCATG00000041708) #18	ENSCATG00000013628	SFXN3 (ENSCATG00000031461) #19	KAZALD1 (ENSCATG00000012292) #20	TLX1 (ENSCATG00000027146) #21	LBX1 (ENSCATG00000015241)	BTRC (ENSCATG00000041687) #22	POLL (ENSCATG00000030579) #23	DPCD (ENSCATG00000015600) #24	FBXW4 (ENSCATG00000042023) #25	FGF8 (ENSCATG00000032104) #26	NPM3 (ENSCATG00000013755) #27	OGA (ENSCATG00000032677) #28	KCNIP2 (ENSCATG00000037631) #29	ARMH3 (ENSCATG00000044859) #30	HPS6 (ENSCATG00000007175) #31	LDB1 (ENSCATG00000041139) #32	PPRC1 (ENSCATG00000029634) #33	NOLC1 (ENSCATG00000020949) #34	ELOVL3 (ENSCATG00000029918) #36	PITX3 (ENSCATG00000035980) #37	GBF1 (ENSCATG00000041222)
Drill	MODERN SPECIES	660	NDUFB8 (ENSMLEG00000030934) #10	HIF1AN (ENSMLEG00000042618) #11	PAX2 (ENSMLEG00000038896) #12	SLF2 (ENSMLEG00000043602) #13	SEMA4G (ENSMLEG00000032692) #14	MRPL43 (ENSMLEG00000031351) #15	PDIA2 (ENSMLEG00000027539)	TWNK (ENSMLEG00000028857) #16	LZTS2 (ENSMLEG00000043006) #17	PDZD7 (ENSMLEG00000044282) #18	ENSMLEG00000018361	SFXN3 (ENSMLEG00000041643) #19	KAZALD1 (ENSMLEG00000041241) #20	TLX1 (ENSMLEG00000036491) #21	LBX1 (ENSMLEG00000038173)	BTRC (ENSMLEG00000037020) #22	POLL (ENSMLEG00000044464) #23	DPCD (ENSMLEG00000036892) #24	FBXW4 (ENSMLEG00000039840) #25	FGF8 (ENSMLEG00000038840) #26	NPM3 (ENSMLEG00000038129) #27	OGA (ENSMLEG00000034257) #28	KCNIP2 (ENSMLEG00000040604) #29	ARMH3 (ENSMLEG00000040244) #30	LDB1 (ENSMLEG00000029239) #32	PPRC1 (ENSMLEG00000035092) #33	NOLC1 (ENSMLEG00000040773) #34	ELOVL3 (ENSMLEG00000042786) #36	ENSMLEG00000041298 #37	GBF1 (ENSMLEG00000030526)	NFKB2 (ENSMLEG00000025549)
Macaca	ANCESTRAL SPECIES	11	ENSGT00940000157409 #11	ENSGT00390000014818.g.b.a.b	ENSGT00940000153294.m.a.c.b.p.d	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a.m #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Pig-tailed macaque	MODERN SPECIES	550	HIF1AN (ENSMNEG00000036352) #11	ENSMNEG00000013689	ENSMNEG00000044180	PAX2 (ENSMNEG00000045259) #12	SLF2 (ENSMNEG00000042692) #13	SEMA4G (ENSMNEG00000029411) #14	MRPL43 (ENSMNEG00000038269) #15	TWNK (ENSMNEG00000041560) #16	LZTS2 (ENSMNEG00000022148) #17	ENSMNEG00000000753	PDZD7 (ENSMNEG00000036573) #18	SFXN3 (ENSMNEG00000041774) #19	KAZALD1 (ENSMNEG00000041154) #20	TLX1 (ENSMNEG00000039702) #21	LBX1 (ENSMNEG00000003768)	BTRC (ENSMNEG00000043926) #22	POLL (ENSMNEG00000032214) #23	ENSMNEG00000041174	DPCD (ENSMNEG00000039583) #24	FBXW4 (ENSMNEG00000007347) #25	FGF8 (ENSMNEG00000044546) #26	NPM3 (ENSMNEG00000039999) #27	OGA (ENSMNEG00000042719) #28	KCNIP2 (ENSMNEG00000033420) #29	ARMH3 (ENSMNEG00000027491) #30	HPS6 (ENSMNEG00000003739) #31	LDB1 (ENSMNEG00000039832) #32	PPRC1 (ENSMNEG00000031603) #33	NOLC1 (ENSMNEG00000033199) #34	ELOVL3 (ENSMNEG00000026432) #36	PITX3 (ENSMNEG00000027087) #37
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00390000000628.w.a.a.a #10	ENSGT00940000157409 #11	ENSGT00390000014818.g.b.a.b	ENSGT00940000153294.m.a.c.b.p.d	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a.m #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT01100000263577.a.a.b.b.a.a.b.a.a.a.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Crab-eating macaque	MODERN SPECIES	19	WNT8B (ENSMFAG00000035598) #8	SEC31B (ENSMFAG00000043520) #9	ENSMFAG00000040760 #10	HIF1AN (ENSMFAG00000043376) #11	ENSMFAG00000004864	PAX2 (ENSMFAG00000041514) #12	SLF2 (ENSMFAG00000042449) #13	SEMA4G (ENSMFAG00000038405) #14	MRPL43 (ENSMFAG00000036954) #15	TWNK (ENSMFAG00000032824) #16	LZTS2 (ENSMFAG00000048904) #17	PDZD7 (ENSMFAG00000037794) #18	SFXN3 (ENSMFAG00000035501) #19	KAZALD1 (ENSMFAG00000063924) #20	TLX1 (ENSMFAG00000045878) #21	BTRC (ENSMFAG00000005295) #22	POLL (ENSMFAG00000043080) #23	DPCD (ENSMFAG00000036058) #24	FBXW4 (ENSMFAG00000044810) #25	FGF8 (ENSMFAG00000003751) #26	NPM3 (ENSMFAG00000041878) #27	OGA (ENSMFAG00000032188) #28	KCNIP2 (ENSMFAG00000046056) #29	ARMH3 (ENSMFAG00000044833) #30	ENSMFAG00000051632	ENSMFAG00000061163	LDB1 (ENSMFAG00000041257) #32	ENSMFAG00000038589 #33	NOLC1 (ENSMFAG00000044654) #34	ELOVL3 (ENSMFAG00000036362) #36	PITX3 (ENSMFAG00000045143) #37
Rhesus	MODERN SPECIES	19	SEC31B (ENSMMUG00000006622) #9	NDUFB8 (ENSMMUG00000006636) #10	HIF1AN (ENSMMUG00000006637) #11	ENSMMUG00000030563	ENSMMUG00000040838	PAX2 (ENSMMUG00000009163) #12	SLF2 (ENSMMUG00000013418) #13	SEMA4G (ENSMMUG00000010680) #14	MRPL43 (ENSMMUG00000010679) #15	TWNK (ENSMMUG00000064033) #16	LZTS2 (ENSMMUG00000010674) #17	SFXN3 (ENSMMUG00000022620) #19	KAZALD1 (ENSMMUG00000017668) #20	TLX1 (ENSMMUG00000017667) #21	LBX1 (ENSMMUG00000060144)	BTRC (ENSMMUG00000006741) #22	POLL (ENSMMUG00000006747) #23	DPCD (ENSMMUG00000006751) #24	FBXW4 (ENSMMUG00000052198) #25	FGF8 (ENSMMUG00000015771) #26	NPM3 (ENSMMUG00000015774) #27	OGA (ENSMMUG00000015775) #28	KCNIP2 (ENSMMUG00000015776) #29	ARMH3 (ENSMMUG00000001539) #30	HPS6 (ENSMMUG00000009374) #31	ENSMMUG00000056725	LDB1 (ENSMMUG00000009375) #32	PPRC1 (ENSMMUG00000001186) #33	NOLC1 (ENSMMUG00000001183) #34	ELOVL3 (ENSMMUG00000022752) #36	PITX3 (ENSMMUG00000056167) #37
Platyrrhini	ANCESTRAL SPECIES	14	ENSGT00390000003175.a.a #9	ENSGT00390000000628.y #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796.g.b #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Mas night monkey	MODERN SPECIES	658	SEC31B (ENSANAG00000034066) #9	ENSANAG00000019864 #10	HIF1AN (ENSANAG00000035704) #11	PAX2 (ENSANAG00000008318) #12	SLF2 (ENSANAG00000031592) #13	SEMA4G (ENSANAG00000030905) #14	MRPL43 (ENSANAG00000034938) #15	TWNK (ENSANAG00000022264) #16	LZTS2 (ENSANAG00000012310) #17	PDZD7 (ENSANAG00000023929) #18	ENSANAG00000021408	SFXN3 (ENSANAG00000035635) #19	KAZALD1 (ENSANAG00000020414) #20	TLX1 (ENSANAG00000027104) #21	LBX1 (ENSANAG00000036814)	BTRC (ENSANAG00000035347) #22	POLL (ENSANAG00000021199) #23	DPCD (ENSANAG00000036663) #24	FBXW4 (ENSANAG00000034872) #25	FGF8 (ENSANAG00000031951) #26	ENSANAG00000027082 #27	OGA (ENSANAG00000034639) #28	KCNIP2 (ENSANAG00000020362) #29	ARMH3 (ENSANAG00000029091) #30	ENSANAG00000019621	LDB1 (ENSANAG00000034893) #32	PPRC1 (ENSANAG00000029448) #33	ELOVL3 (ENSANAG00000037453) #36	PITX3 (ENSANAG00000023017) #37	GBF1 (ENSANAG00000028077)	NFKB2 (ENSANAG00000038091)
Cebidae	ANCESTRAL SPECIES	17	ENSGT00390000003175.a.a #9	ENSGT00390000000628.y #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796.g.b #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Marmoset	MODERN SPECIES	3	ENSCJAG00000023350	PAX2 (ENSCJAG00000017397) #12	SLF2 (ENSCJAG00000017425) #13	SEMA4G (ENSCJAG00000070347) #14	ENSCJAG00000017480 #15	ENSCJAG00000062174 #15	ENSCJAG00000017487 #16	ENSCJAG00000078679 #16	LZTS2 (ENSCJAG00000041968) #17	PDZD7 (ENSCJAG00000017518) #18	SFXN3 (ENSCJAG00000017527) #19	KAZALD1 (ENSCJAG00000017554) #20	TLX1 (ENSCJAG00000017563) #21	ENSCJAG00000087194	LBX1 (ENSCJAG00000017569)	BTRC (ENSCJAG00000017573) #22	POLL (ENSCJAG00000017600) #23	DPCD (ENSCJAG00000017614) #24	FBXW4 (ENSCJAG00000017627) #25	FGF8 (ENSCJAG00000084172) #26	NPM3 (ENSCJAG00000017650) #27	OGA (ENSCJAG00000017657) #28	KCNIP2 (ENSCJAG00000017676) #29	ARMH3 (ENSCJAG00000017743) #30	ENSCJAG00000056816	HPS6 (ENSCJAG00000022973) #31	LDB1 (ENSCJAG00000017777) #32	PPRC1 (ENSCJAG00000017812) #33	NOLC1 (ENSCJAG00000017832) #34	ENSCJAG00000082055	ELOVL3 (ENSCJAG00000079228) #36
Cebidae_a	ANCESTRAL SPECIES	13	ENSGT00390000003175.a.a #9	ENSGT00390000000628.y #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796.g.b #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000005532.e.b.e	ENSGT00390000002554 #30	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Capuchin	MODERN SPECIES	71	HIF1AN (ENSCCAG00000028582) #11	PAX2 (ENSCCAG00000035623) #12	SLF2 (ENSCCAG00000016220) #13	SEMA4G (ENSCCAG00000036740) #14	MRPL43 (ENSCCAG00000027213) #15	TWNK (ENSCCAG00000022331) #16	LZTS2 (ENSCCAG00000028122) #17	ENSCCAG00000031185	PDZD7 (ENSCCAG00000027027) #18	SFXN3 (ENSCCAG00000027543) #19	KAZALD1 (ENSCCAG00000025698) #20	TLX1 (ENSCCAG00000022529) #21	ENSCCAG00000018927	LBX1 (ENSCCAG00000027225)	TYROBP (ENSCCAG00000030200)	BTRC (ENSCCAG00000028586) #22	POLL (ENSCCAG00000021549) #23	DPCD (ENSCCAG00000031078) #24	FBXW4 (ENSCCAG00000015377) #25	FGF8 (ENSCCAG00000028398) #26	ENSCCAG00000031043 #27	OGA (ENSCCAG00000035955) #28	KCNIP2 (ENSCCAG00000020733) #29	ENSCCAG00000021166	ARMH3 (ENSCCAG00000030229) #30	ENSCCAG00000019492	LDB1 (ENSCCAG00000032351) #32	PPRC1 (ENSCCAG00000014910) #33	NOLC1 (ENSCCAG00000031293) #34	ELOVL3 (ENSCCAG00000030858) #36	PITX3 (ENSCCAG00000024206) #37
Bolivian squirrel monkey	MODERN SPECIES	47	NDUFB8 (ENSSBOG00000032796) #10	HIF1AN (ENSSBOG00000023430) #11	ENSSBOG00000018963	PAX2 (ENSSBOG00000030216) #12	ENSSBOG00000036188	SLF2 (ENSSBOG00000034063) #13	SEMA4G (ENSSBOG00000026805) #14	MRPL43 (ENSSBOG00000022294) #15	TWNK (ENSSBOG00000020346) #16	LZTS2 (ENSSBOG00000032084) #17	PDZD7 (ENSSBOG00000035647) #18	SFXN3 (ENSSBOG00000032559) #19	KAZALD1 (ENSSBOG00000032715) #20	ENSSBOG00000030742 #21	LBX1 (ENSSBOG00000026504)	BTRC (ENSSBOG00000034480) #22	POLL (ENSSBOG00000035823) #23	DPCD (ENSSBOG00000024659) #24	FBXW4 (ENSSBOG00000036214) #25	ENSSBOG00000026520	FGF8 (ENSSBOG00000026891) #26	NPM3 (ENSSBOG00000027661) #27	OGA (ENSSBOG00000024431) #28	KCNIP2 (ENSSBOG00000029268) #29	ENSSBOG00000028614	ARMH3 (ENSSBOG00000027965) #30	LDB1 (ENSSBOG00000029453) #32	PPRC1 (ENSSBOG00000021902) #33	NOLC1 (ENSSBOG00000031205) #34	ELOVL3 (ENSSBOG00000028586) #36	ENSSBOG00000016252 #37
Tarsier	MODERN SPECIES	2466																BTRC (ENSTSYG00000004467) #22
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Mouse lemur	MODERN SPECIES	6	WNT8B (ENSMICG00000001314) #8	SEC31B (ENSMICG00000044332) #9	NDUFB8 (ENSMICG00000001341) #10	HIF1AN (ENSMICG00000001348) #11	PAX2 (ENSMICG00000001357) #12	SLF2 (ENSMICG00000001371) #13	SEMA4G (ENSMICG00000030739) #14	ENSMICG00000000014 #15	TWNK (ENSMICG00000045106) #16	LZTS2 (ENSMICG00000000016) #17	PDZD7 (ENSMICG00000000017) #18	SFXN3 (ENSMICG00000000018) #19	KAZALD1 (ENSMICG00000042680) #20	TLX1 (ENSMICG00000000020) #21	LBX1 (ENSMICG00000042752)	BTRC (ENSMICG00000007365) #22	ENSMICG00000032738	POLL (ENSMICG00000044578) #23	DPCD (ENSMICG00000007381) #24	FBXW4 (ENSMICG00000030032) #25	FGF8 (ENSMICG00000011733) #26	NPM3 (ENSMICG00000044119) #27	OGA (ENSMICG00000011745) #28	KCNIP2 (ENSMICG00000011754) #29	ARMH3 (ENSMICG00000011767) #30	LDB1 (ENSMICG00000011785) #32	PPRC1 (ENSMICG00000011794) #33	NOLC1 (ENSMICG00000011811) #34	ELOVL3 (ENSMICG00000048136) #36	PITX3 (ENSMICG00000045312) #37	GBF1 (ENSMICG00000011832)
Lemuriformes_a	ANCESTRAL SPECIES	21	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT00940000166765	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Greater bamboo lemur	MODERN SPECIES	375	NDUFB8 (ENSPSMG00000009009) #10	HIF1AN (ENSPSMG00000009028) #11	PAX2 (ENSPSMG00000009108) #12	ENSPSMG00000009133	SLF2 (ENSPSMG00000009144) #13	SEMA4G (ENSPSMG00000009158) #14	ENSPSMG00000009174 #15	TWNK (ENSPSMG00000009185) #16	LZTS2 (ENSPSMG00000009191) #17	PDZD7 (ENSPSMG00000009272) #18	ENSPSMG00000009339	SFXN3 (ENSPSMG00000009356) #19	KAZALD1 (ENSPSMG00000009371) #20	TLX1 (ENSPSMG00000009380) #21	LBX1 (ENSPSMG00000009389)	BTRC (ENSPSMG00000009920) #22	POLL (ENSPSMG00000010806) #23	DPCD (ENSPSMG00000010850) #24	FBXW4 (ENSPSMG00000010859) #25
Coquerels sifaka	MODERN SPECIES	870	WNT8B (ENSPCOG00000027043) #8	SEC31B (ENSPCOG00000023825) #9	NDUFB8 (ENSPCOG00000014141) #10	HIF1AN (ENSPCOG00000018877) #11	PAX2 (ENSPCOG00000019488) #12	SLF2 (ENSPCOG00000025314) #13	SEMA4G (ENSPCOG00000023281) #14	MRPL43 (ENSPCOG00000027271) #15	TWNK (ENSPCOG00000014623) #16	LZTS2 (ENSPCOG00000023474) #17	PDZD7 (ENSPCOG00000026114) #18	SFXN3 (ENSPCOG00000025511) #19	KAZALD1 (ENSPCOG00000016724) #20	TLX1 (ENSPCOG00000000103) #21	LBX1 (ENSPCOG00000019643)	BTRC (ENSPCOG00000020549) #22	ENSPCOG00000010924	ENSPCOG00000026908	POLL (ENSPCOG00000019314) #23	DPCD (ENSPCOG00000017781) #24	FBXW4 (ENSPCOG00000021206) #25	FGF8 (ENSPCOG00000017981) #26	NPM3 (ENSPCOG00000014704) #27	OGA (ENSPCOG00000014940) #28	KCNIP2 (ENSPCOG00000024556) #29	ARMH3 (ENSPCOG00000019882) #30	LDB1 (ENSPCOG00000014358) #32	PPRC1 (ENSPCOG00000025917) #33	ENSPCOG00000028588	ELOVL3 (ENSPCOG00000022173) #36	PITX3 (ENSPCOG00000018343) #37
Bushbaby	MODERN SPECIES	136	WNT8B (ENSOGAG00000029889) #8	SEC31B (ENSOGAG00000008885) #9	ENSOGAG00000030711 #10	HIF1AN (ENSOGAG00000010425) #11	PAX2 (ENSOGAG00000015274) #12	SLF2 (ENSOGAG00000015280) #13	SEMA4G (ENSOGAG00000015286) #14	MRPL43 (ENSOGAG00000030715) #15	TWNK (ENSOGAG00000029204) #16	LZTS2 (ENSOGAG00000012873) #17	PDZD7 (ENSOGAG00000012875) #18	SFXN3 (ENSOGAG00000012881) #19	KAZALD1 (ENSOGAG00000011722) #20	TLX1 (ENSOGAG00000013614) #21	LBX1 (ENSOGAG00000008679)	BTRC (ENSOGAG00000014623) #22	POLL (ENSOGAG00000012042) #23	FBXW4 (ENSOGAG00000033125) #25	FGF8 (ENSOGAG00000024920) #26	NPM3 (ENSOGAG00000010001) #27	ENSOGAG00000010002 #28	KCNIP2 (ENSOGAG00000010006) #29	ARMH3 (ENSOGAG00000010009) #30	HPS6 (ENSOGAG00000033543) #31	LDB1 (ENSOGAG00000016349) #32	PPRC1 (ENSOGAG00000016354) #33	NOLC1 (ENSOGAG00000016359) #34	ELOVL3 (ENSOGAG00000016363) #36	PITX3 (ENSOGAG00000029285) #37	GBF1 (ENSOGAG00000016366)	NFKB2 (ENSOGAG00000016379)
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Tree shrew	MODERN SPECIES	3389																BTRC (ENSTBEG00000001368) #22	POLL (ENSTBEG00000002691) #23	OGA (ENSTBEG00000003188) #28	ARMH3 (ENSTBEG00000004022) #30	HPS6 (ENSTBEG00000006230) #31	LDB1 (ENSTBEG00000006924) #32	PPRC1 (ENSTBEG00000008148) #33	NOLC1 (ENSTBEG00000008884) #34
Glires	ANCESTRAL SPECIES	16	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Rodentia	ANCESTRAL SPECIES	16	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Muroidea	ANCESTRAL SPECIES	1	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Muroidea_A	ANCESTRAL SPECIES		ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Prairie vole	MODERN SPECIES	16	Ndufb8 (ENSMOCG00000003247) #10	Hif1an (ENSMOCG00000013701) #11	Pax2 (ENSMOCG00000015583) #12	Slf2 (ENSMOCG00000019122) #13	ENSMOCG00000015291	Sema4g (ENSMOCG00000004639) #14	Mrpl43 (ENSMOCG00000008602) #15	Twnk (ENSMOCG00000004167) #16	Lzts2 (ENSMOCG00000012162) #17	ENSMOCG00000014095 #18	ENSMOCG00000019069 #18	Sfxn3 (ENSMOCG00000022608) #19	Kazald1 (ENSMOCG00000015994) #20	Tlx1 (ENSMOCG00000017096) #21	Lbx1 (ENSMOCG00000018337)	Btrc (ENSMOCG00000002451) #22	Poll (ENSMOCG00000006566) #23	Dpcd (ENSMOCG00000013756) #24	Fbxw4 (ENSMOCG00000013178) #25	Fgf8 (ENSMOCG00000021407) #26	Npm3 (ENSMOCG00000013601) #27	Oga (ENSMOCG00000014392) #28	Kcnip2 (ENSMOCG00000022254) #29	Armh3 (ENSMOCG00000011932) #30	Hps6 (ENSMOCG00000001347) #31	ENSMOCG00000004202 #32	ENSMOCG00000014044 #33	ENSMOCG00000018283 #33	Nolc1 (ENSMOCG00000015232) #34	Elovl3 (ENSMOCG00000022790) #36	Pitx3 (ENSMOCG00000012980) #37
Northern American deer mouse	MODERN SPECIES		Sec31b (ENSPEMG00000018861) #9	ENSPEMG00000016062 #10	Hif1an (ENSPEMG00000014638) #11	Pax2 (ENSPEMG00000007884) #12	Slf2 (ENSPEMG00000018671) #13	Sema4g (ENSPEMG00000010019) #14	Mrpl43 (ENSPEMG00000001510) #15	Twnk (ENSPEMG00000013921) #16	Lzts2 (ENSPEMG00000013419) #17	Pdzd7 (ENSPEMG00000004000) #18	ENSPEMG00000030678	Sfxn3 (ENSPEMG00000012869) #19	Kazald1 (ENSPEMG00000018686) #20	Tlx1 (ENSPEMG00000016966) #21	Lbx1 (ENSPEMG00000026119)	Btrc (ENSPEMG00000014260) #22	Poll (ENSPEMG00000006876) #23	Dpcd (ENSPEMG00000014479) #24	Fbxw4 (ENSPEMG00000024901) #25	Fgf8 (ENSPEMG00000012905) #26	Npm3 (ENSPEMG00000007731) #27	Oga (ENSPEMG00000008883) #28	Kcnip2 (ENSPEMG00000015045) #29	Armh3 (ENSPEMG00000014466) #30	Hps6 (ENSPEMG00000003992) #31	Ldb1 (ENSPEMG00000011489) #32	Pprc1 (ENSPEMG00000016590) #33	ENSPEMG00000026626	Elovl3 (ENSPEMG00000000778) #36	Pitx3 (ENSPEMG00000026373) #37	Gbf1 (ENSPEMG00000018772)
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Chinese hamster chok1gshd	MODERN SPECIES	215	Wnt8b (ENSCGRG00001020386) #8	Sec31b (ENSCGRG00001008897) #9	Ndufb8 (ENSCGRG00001002142) #10	Hif1an (ENSCGRG00001019981) #11	Pax2 (ENSCGRG00001019089) #12	Slf2 (ENSCGRG00001014230) #13	Sema4g (ENSCGRG00001007429) #14	Mrpl43 (ENSCGRG00001003475) #15	Twnk (ENSCGRG00001000710) #16	Lzts2 (ENSCGRG00001023049) #17	Pdzd7 (ENSCGRG00001017672) #18	Sfxn3 (ENSCGRG00001015591) #19	Kazald1 (ENSCGRG00001000227) #20	Tlx1 (ENSCGRG00001021053) #21	Lbx1 (ENSCGRG00001017540)	Btrc (ENSCGRG00001015459) #22	Poll (ENSCGRG00001010513) #23	Dpcd (ENSCGRG00001005917) #24	Fbxw4 (ENSCGRG00001003996) #25	Fgf8 (ENSCGRG00001015246) #26	Npm3 (ENSCGRG00001013345) #27	Oga (ENSCGRG00001020553) #28	Kcnip2 (ENSCGRG00001019478) #29	Armh3 (ENSCGRG00001015570) #30	Hps6 (ENSCGRG00001010957) #31	Ldb1 (ENSCGRG00001020743) #32	Pprc1 (ENSCGRG00001011726) #33	Nolc1 (ENSCGRG00001009806) #34	ELOVL3 (ENSCGRG00001005008) #36	Pitx3 (ENSCGRG00001024147) #37	Gbf1 (ENSCGRG00001022494)
Golden Hamster	MODERN SPECIES	617	Wnt8b (ENSMAUG00000017837) #8	Sec31b (ENSMAUG00000019690) #9	Ndufb8 (ENSMAUG00000020368) #10	Hif1an (ENSMAUG00000019619) #11	Pax2 (ENSMAUG00000015931) #12	Slf2 (ENSMAUG00000017620) #13	Sema4g (ENSMAUG00000016054) #14	Mrpl43 (ENSMAUG00000015594) #15	Twnk (ENSMAUG00000015403) #16	Lzts2 (ENSMAUG00000018041) #17	ENSMAUG00000015875 #18	Sfxn3 (ENSMAUG00000017975) #19	Kazald1 (ENSMAUG00000017475) #20	Tlx1 (ENSMAUG00000015538) #21	Lbx1 (ENSMAUG00000015198)	Btrc (ENSMAUG00000016001) #22	Poll (ENSMAUG00000014674) #23	Dpcd (ENSMAUG00000017884) #24	ENSMAUG00000015787 #25	ENSMAUG00000015569	Fgf8 (ENSMAUG00000016383) #26	Npm3 (ENSMAUG00000015218) #27	Oga (ENSMAUG00000015052) #28	Kcnip2 (ENSMAUG00000019652) #29	Armh3 (ENSMAUG00000019449) #30	Hps6 (ENSMAUG00000002039) #31	Ldb1 (ENSMAUG00000018515) #32	Pprc1 (ENSMAUG00000016674) #33	Elovl3 (ENSMAUG00000013792) #36	Pitx3 (ENSMAUG00000015434) #37	ENSMAUG00000017791
Murinae	ANCESTRAL SPECIES		ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801.d #37	ENSGT00940000156925
Mus	ANCESTRAL SPECIES		ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801.d #37	ENSGT00940000156925
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000169317	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a.p #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801.d #37	ENSGT00940000156925
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000169317	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a.p #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801.d #37	ENSGT00940000156925
Mouse	MODERN SPECIES	10	Sec31b (ENSMUSG00000051984) #9	Gm20538 (ENSMUSG00000091471)	Ndufb8 (ENSMUSG00000025204) #10	Hif1an (ENSMUSG00000036450) #11	Pax2 (ENSMUSG00000004231) #12	Slf2 (ENSMUSG00000036097) #13	Sema4g (ENSMUSG00000025207) #14	Mrpl43 (ENSMUSG00000025208) #15	Twnk (ENSMUSG00000025209) #16	Lzts2 (ENSMUSG00000035342) #17	Pdzd7 (ENSMUSG00000074818) #18	Sfxn3 (ENSMUSG00000025212) #19	Kazald1 (ENSMUSG00000025213) #20	Tlx1 (ENSMUSG00000025215) #21	Lbx1 (ENSMUSG00000025216)	Btrc (ENSMUSG00000025217) #22	Poll (ENSMUSG00000025218) #23	Dpcd (ENSMUSG00000041035) #24	Fbxw4 (ENSMUSG00000040913) #25	Fgf8 (ENSMUSG00000025219) #26	Npm3 (ENSMUSG00000056209) #27	Oga (ENSMUSG00000025220) #28	Kcnip2 (ENSMUSG00000025221) #29	Armh3 (ENSMUSG00000039901) #30	Hps6 (ENSMUSG00000074811) #31	Ldb1 (ENSMUSG00000025223) #32	Pprc1 (ENSMUSG00000055491) #33	Nolc1 (ENSMUSG00000015176) #34	Elovl3 (ENSMUSG00000038754) #36	Pitx3 (ENSMUSG00000025229) #37	Gbf1 (ENSMUSG00000025224)
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000169317	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a.p #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801.d #37	ENSGT00940000156925
spretus	MODERN SPECIES	10	Sec31b (MGP_SPRETEiJ_G0023921) #9	MGP_SPRETEiJ_G0023922	Ndufb8 (MGP_SPRETEiJ_G0023923) #10	Hif1an (MGP_SPRETEiJ_G0023924) #11	Pax2 (MGP_SPRETEiJ_G0023925) #12	Slf2 (MGP_SPRETEiJ_G0023926) #13	Sema4g (MGP_SPRETEiJ_G0023927) #14	Mrpl43 (MGP_SPRETEiJ_G0023928) #15	Twnk (MGP_SPRETEiJ_G0023929) #16	Lzts2 (MGP_SPRETEiJ_G0023930) #17	Pdzd7 (MGP_SPRETEiJ_G0023931) #18	Sfxn3 (MGP_SPRETEiJ_G0023932) #19	Kazald1 (MGP_SPRETEiJ_G0023933) #20	Tlx1 (MGP_SPRETEiJ_G0023934) #21	Lbx1 (MGP_SPRETEiJ_G0023935)	Btrc (MGP_SPRETEiJ_G0023936) #22	Poll (MGP_SPRETEiJ_G0023937) #23	Dpcd (MGP_SPRETEiJ_G0023938) #24	MGP_SPRETEiJ_G0023939 #25	Fgf8 (MGP_SPRETEiJ_G0023940) #26	Npm3 (MGP_SPRETEiJ_G0023941) #27	Oga (MGP_SPRETEiJ_G0023942) #28	Kcnip2 (MGP_SPRETEiJ_G0023943) #29	Armh3 (MGP_SPRETEiJ_G0023944) #30	Hps6 (MGP_SPRETEiJ_G0023945) #31	Ldb1 (MGP_SPRETEiJ_G0023946) #32	Pprc1 (MGP_SPRETEiJ_G0023947) #33	Nolc1 (MGP_SPRETEiJ_G0023948) #34	Elovl3 (MGP_SPRETEiJ_G0023949) #36	Pitx3 (MGP_SPRETEiJ_G0023950) #37	Gbf1 (MGP_SPRETEiJ_G0023951)
Steppe mouse	MODERN SPECIES	3317	Sec31b (ENSMSIG00000013336) #9	Ndufb8 (ENSMSIG00000013308) #10	Hif1an (ENSMSIG00000013295) #11	Pax2 (ENSMSIG00000013194) #12	Slf2 (ENSMSIG00000013125) #13	Sema4g (ENSMSIG00000013048) #14	Mrpl43 (ENSMSIG00000013030) #15	Twnk (ENSMSIG00000013010) #16	Lzts2 (ENSMSIG00000012984) #17	ENSMSIG00000012980	Pdzd7 (ENSMSIG00000012912) #18	Sfxn3 (ENSMSIG00000012828) #19	Kazald1 (ENSMSIG00000012802) #20	Tlx1 (ENSMSIG00000012781) #21	Lbx1 (ENSMSIG00000012769)	Btrc (ENSMSIG00000012680) #22	Poll (ENSMSIG00000012645) #23	ENSMSIG00000012629 #24	ENSMSIG00000012591 #25	Fgf8 (ENSMSIG00000012521) #26	Npm3 (ENSMSIG00000012497) #27	Oga (ENSMSIG00000012429) #28	ENSMSIG00000011884 #29	Armh3 (ENSMSIG00000011813) #30	Hps6 (ENSMSIG00000011802) #31	Ldb1 (ENSMSIG00000011766) #32	Pprc1 (ENSMSIG00000011750) #33	Nolc1 (ENSMSIG00000011702) #34	Elovl3 (ENSMSIG00000011691) #36	Pitx3 (ENSMSIG00000011679) #37	Gbf1 (ENSMSIG00000011585)
Ryukyu mouse	MODERN SPECIES	10	Sec31b (MGP_CAROLIEiJ_G0023000) #9	MGP_CAROLIEiJ_G0023001	Ndufb8 (MGP_CAROLIEiJ_G0023002) #10	Hif1an (MGP_CAROLIEiJ_G0023003) #11	Pax2 (MGP_CAROLIEiJ_G0023004) #12	Slf2 (MGP_CAROLIEiJ_G0023005) #13	Sema4g (MGP_CAROLIEiJ_G0023006) #14	Mrpl43 (MGP_CAROLIEiJ_G0023007) #15	Twnk (MGP_CAROLIEiJ_G0023008) #16	Lzts2 (MGP_CAROLIEiJ_G0023009) #17	Pdzd7 (MGP_CAROLIEiJ_G0023010) #18	Sfxn3 (MGP_CAROLIEiJ_G0023011) #19	Kazald1 (MGP_CAROLIEiJ_G0023012) #20	Tlx1 (MGP_CAROLIEiJ_G0023013) #21	Lbx1 (MGP_CAROLIEiJ_G0023014)	Btrc (MGP_CAROLIEiJ_G0023015) #22	Poll (MGP_CAROLIEiJ_G0023016) #23	Dpcd (MGP_CAROLIEiJ_G0023017) #24	Fbxw4 (MGP_CAROLIEiJ_G0023018) #25	Fgf8 (MGP_CAROLIEiJ_G0023019) #26	Npm3 (MGP_CAROLIEiJ_G0023020) #27	Oga (MGP_CAROLIEiJ_G0023021) #28	Kcnip2 (MGP_CAROLIEiJ_G0023022) #29	Armh3 (MGP_CAROLIEiJ_G0023023) #30	Hps6 (MGP_CAROLIEiJ_G0023024) #31	Ldb1 (MGP_CAROLIEiJ_G0023025) #32	Pprc1 (MGP_CAROLIEiJ_G0023026) #33	Nolc1 (MGP_CAROLIEiJ_G0023027) #34	Elovl3 (MGP_CAROLIEiJ_G0023028) #36	Pitx3 (MGP_CAROLIEiJ_G0023029) #37	Gbf1 (MGP_CAROLIEiJ_G0023030)
Shrew mouse	MODERN SPECIES		MGP_PahariEiJ_G0014490	MGP_PahariEiJ_G0014491	Ndufb8 (MGP_PahariEiJ_G0014492) #10	Hif1an (MGP_PahariEiJ_G0014493) #11	Pax2 (MGP_PahariEiJ_G0014494) #12	Slf2 (MGP_PahariEiJ_G0014495) #13	Sema4g (MGP_PahariEiJ_G0014496) #14	Mrpl43 (MGP_PahariEiJ_G0014497) #15	Twnk (MGP_PahariEiJ_G0014498) #16	MGP_PahariEiJ_G0014499 #17	Pdzd7 (MGP_PahariEiJ_G0014500) #18	Sfxn3 (MGP_PahariEiJ_G0014501) #19	Kazald1 (MGP_PahariEiJ_G0014502) #20	Tlx1 (MGP_PahariEiJ_G0014503) #21	Lbx1 (MGP_PahariEiJ_G0014504)	Btrc (MGP_PahariEiJ_G0014505) #22	Poll (MGP_PahariEiJ_G0014506) #23	Dpcd (MGP_PahariEiJ_G0014507) #24	MGP_PahariEiJ_G0014508 #25	Fgf8 (MGP_PahariEiJ_G0014509) #26	Npm3 (MGP_PahariEiJ_G0014510) #27	Oga (MGP_PahariEiJ_G0014511) #28	Kcnip2 (MGP_PahariEiJ_G0014512) #29	Armh3 (MGP_PahariEiJ_G0014513) #30	Hps6 (MGP_PahariEiJ_G0014514) #31	Ldb1 (MGP_PahariEiJ_G0014515) #32	Pprc1 (MGP_PahariEiJ_G0014516) #33	Nolc1 (MGP_PahariEiJ_G0014517) #34	Elovl3 (MGP_PahariEiJ_G0014518) #36	Pitx3 (MGP_PahariEiJ_G0014519) #37	Gbf1 (MGP_PahariEiJ_G0014520)
Rat	MODERN SPECIES		Sec31b (ENSRNOG00000025781) #9	Ndufb8 (ENSRNOG00000014078) #10	Hif1an (ENSRNOG00000014234) #11	Pax2 (ENSRNOG00000014253) #12	Slf2 (ENSRNOG00000014482) #13	AC121209.1 (ENSRNOG00000036588)	Sema4g (ENSRNOG00000014650) #14	Mrpl43 (ENSRNOG00000014890) #15	Twnk (ENSRNOG00000014935) #16	Lzts2 (ENSRNOG00000014969) #17	Pdzd7 (ENSRNOG00000032946) #18	Sfxn3 (ENSRNOG00000015442) #19	Kazald1 (ENSRNOG00000016058) #20	Tlx1 (ENSRNOG00000016120) #21	Lbx1 (ENSRNOG00000025520)	Btrc (ENSRNOG00000016280) #22	Poll (ENSRNOG00000016748) #23	Dpcd (ENSRNOG00000017241) #24	Fbxw4 (ENSRNOG00000046211) #25	Fgf8 (ENSRNOG00000017524) #26	Npm3 (ENSRNOG00000017622) #27	Oga (ENSRNOG00000017822) #28	Kcnip2 (ENSRNOG00000018018) #29	Armh3 (ENSRNOG00000025523) #30	Hps6 (ENSRNOG00000018433) #31	Ldb1 (ENSRNOG00000018468) #32	Pprc1 (ENSRNOG00000018561) #33	Nolc1 (ENSRNOG00000018704) #34	Elovl3 (ENSRNOG00000019124) #36	Pitx3 (ENSRNOG00000019194) #37	Gbf1 (ENSRNOG00000026048)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1300	Sec31b (ENSNGAG00000003078) #9	Ndufb8 (ENSNGAG00000022265) #10	Hif1an (ENSNGAG00000022464) #11	Pax2 (ENSNGAG00000011967) #12	Slf2 (ENSNGAG00000022141) #13	Sema4g (ENSNGAG00000014131) #14	Mrpl43 (ENSNGAG00000023476) #15	Twnk (ENSNGAG00000023645) #16	Lzts2 (ENSNGAG00000023942) #17	ENSNGAG00000004602 #18	Sfxn3 (ENSNGAG00000017442) #19	Kazald1 (ENSNGAG00000011414) #20	Tlx1 (ENSNGAG00000024255) #21	Lbx1 (ENSNGAG00000023979)	ENSNGAG00000023625	Btrc (ENSNGAG00000001803) #22	Poll (ENSNGAG00000021402) #23	Dpcd (ENSNGAG00000015959) #24	Fbxw4 (ENSNGAG00000022749) #25	Fgf8 (ENSNGAG00000018999) #26	ENSNGAG00000022833 #27	Oga (ENSNGAG00000011804) #28	Kcnip2 (ENSNGAG00000024132) #29	Armh3 (ENSNGAG00000023147) #30	Hps6 (ENSNGAG00000012214) #31	ENSNGAG00000021169	Ldb1 (ENSNGAG00000024157) #32	Pprc1 (ENSNGAG00000016516) #33	Nolc1 (ENSNGAG00000024139) #34	Elovl3 (ENSNGAG00000013825) #36	Pitx3 (ENSNGAG00000021500) #37
Lesser Egyptian jerboa	MODERN SPECIES	70	Wnt8b (ENSJJAG00000010131) #8	Sec31b (ENSJJAG00000020478) #9	Ndufb8 (ENSJJAG00000021005) #10	Hif1an (ENSJJAG00000013793) #11	Pax2 (ENSJJAG00000000526) #12	Slf2 (ENSJJAG00000023625) #13	Sema4g (ENSJJAG00000000673) #14	Mrpl43 (ENSJJAG00000023922) #15	ENSJJAG00000006388 #16	Lzts2 (ENSJJAG00000015056) #17	ENSJJAG00000014285 #18	Sfxn3 (ENSJJAG00000016145) #19	Kazald1 (ENSJJAG00000021687) #20	ENSJJAG00000006430 #21	Lbx1 (ENSJJAG00000021756)	Btrc (ENSJJAG00000011813) #22	Poll (ENSJJAG00000024104) #23	Dpcd (ENSJJAG00000010119) #24	ENSJJAG00000016263 #25	Fgf8 (ENSJJAG00000014440) #26	Npm3 (ENSJJAG00000018907) #27	Oga (ENSJJAG00000020565) #28	Kcnip2 (ENSJJAG00000019358) #29	Armh3 (ENSJJAG00000018861) #30	Hps6 (ENSJJAG00000011662) #31	Ldb1 (ENSJJAG00000012307) #32	ENSJJAG00000024088 #33	ENSJJAG00000005177 #33	Nolc1 (ENSJJAG00000021131) #34	Elovl3 (ENSJJAG00000020437) #36	Pitx3 (ENSJJAG00000020721) #37
Kangaroo rat	MODERN SPECIES	355	Wnt8b (ENSDORG00000000610) #8	Sec31b (ENSDORG00000000124) #9	Ndufb8 (ENSDORG00000006217) #10	Hif1an (ENSDORG00000026469) #11	Pax2 (ENSDORG00000006193) #12	Slf2 (ENSDORG00000004458) #13	Sema4g (ENSDORG00000004459) #14	Mrpl43 (ENSDORG00000023986) #15	Twnk (ENSDORG00000004461) #16	Lzts2 (ENSDORG00000016411) #17	ENSDORG00000016413 #18	Sfxn3 (ENSDORG00000016415) #19	Kazald1 (ENSDORG00000016417) #20	ENSDORG00000025952 #21	Lbx1 (ENSDORG00000029567)	Btrc (ENSDORG00000014204) #22	Poll (ENSDORG00000024173) #23	Dpcd (ENSDORG00000014209) #24	Fbxw4 (ENSDORG00000014212) #25	Fgf8 (ENSDORG00000029227) #26	Npm3 (ENSDORG00000003491) #27	Oga (ENSDORG00000003493) #28	Kcnip2 (ENSDORG00000003495) #29	Armh3 (ENSDORG00000003496) #30	ENSDORG00000023337	Hps6 (ENSDORG00000028123) #31	Ldb1 (ENSDORG00000003498) #32	Pprc1 (ENSDORG00000001046) #33	Nolc1 (ENSDORG00000001056) #34	Elovl3 (ENSDORG00000027255) #36	Pitx3 (ENSDORG00000023993) #37
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Marmotini	ANCESTRAL SPECIES	16	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Marmotini_b	ANCESTRAL SPECIES	76	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409.e #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Squirrel	MODERN SPECIES	200	WNT8B (ENSSTOG00000022425) #8	SEC31B (ENSSTOG00000009253) #9	NDUFB8 (ENSSTOG00000020727) #10	ENSSTOG00000009302 #11	PAX2 (ENSSTOG00000011575) #12	SLF2 (ENSSTOG00000008951) #13	SEMA4G (ENSSTOG00000008994) #14	MRPL43 (ENSSTOG00000009016) #15	TWNK (ENSSTOG00000009030) #16	LZTS2 (ENSSTOG00000015232) #17	PDZD7 (ENSSTOG00000009046) #18	SFXN3 (ENSSTOG00000026614) #19	KAZALD1 (ENSSTOG00000015240) #20	ENSSTOG00000023842 #21	LBX1 (ENSSTOG00000006491)	BTRC (ENSSTOG00000022481) #22	POLL (ENSSTOG00000011485) #23	DPCD (ENSSTOG00000011490) #24	FBXW4 (ENSSTOG00000011495) #25	FGF8 (ENSSTOG00000023351) #26	NPM3 (ENSSTOG00000022621) #27	ENSSTOG00000032901 #28	KCNIP2 (ENSSTOG00000021030) #29	ARMH3 (ENSSTOG00000015633) #30	HPS6 (ENSSTOG00000024918) #31	LDB1 (ENSSTOG00000002139) #32	ENSSTOG00000034359 #33	ENSSTOG00000002156 #33	NOLC1 (ENSSTOG00000002168) #34	ELOVL3 (ENSSTOG00000015013) #36	PITX3 (ENSSTOG00000015025) #37
Arctic ground squirrel	MODERN SPECIES	373	NDUFB8 (ENSUPAG00010010693) #10	ENSUPAG00010010677 #11	PAX2 (ENSUPAG00010010652) #12	SLF2 (ENSUPAG00010010631) #13	SEMA4G (ENSUPAG00010010602) #14	MRPL43 (ENSUPAG00010010598) #15	TWNK (ENSUPAG00010010588) #16	LZTS2 (ENSUPAG00010010572) #17	ENSUPAG00010010561 #18	ENSUPAG00010010444 #18	SFXN3 (ENSUPAG00010010359) #19	KAZALD1 (ENSUPAG00010010340) #20	TLX1 (ENSUPAG00010010336) #21	LBX1 (ENSUPAG00010010328)	ENSUPAG00010010321	BTRC (ENSUPAG00010010245) #22	POLL (ENSUPAG00010010241) #23	DPCD (ENSUPAG00010010220) #24	FBXW4 (ENSUPAG00010010202) #25	FGF8 (ENSUPAG00010010083) #26	NPM3 (ENSUPAG00010010073) #27	OGA (ENSUPAG00010010052) #28	KCNIP2 (ENSUPAG00010009866) #29	ARMH3 (ENSUPAG00010009848) #30	HPS6 (ENSUPAG00010009845) #31	ENSUPAG00010009826 #32	PPRC1 (ENSUPAG00010009814) #33	NOLC1 (ENSUPAG00010009783) #34
Alpin marmot	MODERN SPECIES	39	NDUFB8 (ENSMMMG00000023049) #10	HIF1AN (ENSMMMG00000023051) #11	PAX2 (ENSMMMG00000023055) #12	SLF2 (ENSMMMG00000023066) #13	SEMA4G (ENSMMMG00000023078) #14	MRPL43 (ENSMMMG00000023087) #15	TWNK (ENSMMMG00000023092) #16	ENSMMMG00000023095 #17	ENSMMMG00000023099 #18	ENSMMMG00000023144 #18	ENSMMMG00000023146	SFXN3 (ENSMMMG00000023149) #19	KAZALD1 (ENSMMMG00000023167) #20	ENSMMMG00000023172 #21	LBX1 (ENSMMMG00000023177)	BTRC (ENSMMMG00000023182) #22	POLL (ENSMMMG00000023200) #23	DPCD (ENSMMMG00000023210) #24	FBXW4 (ENSMMMG00000023212) #25	FGF8 (ENSMMMG00000023215) #26	NPM3 (ENSMMMG00000023217) #27	OGA (ENSMMMG00000023220) #28	KCNIP2 (ENSMMMG00000023225) #29	ARMH3 (ENSMMMG00000023233) #30	HPS6 (ENSMMMG00000023243) #31	LDB1 (ENSMMMG00000023248) #32	PPRC1 (ENSMMMG00000023259) #33	NOLC1 (ENSMMMG00000023274) #34	ELOVL3 (ENSMMMG00000023279) #36	PITX3 (ENSMMMG00000023281) #37	GBF1 (ENSMMMG00000023283)
Eurasian red squirrel	MODERN SPECIES	13	WNT8B (ENSSVLG00005010847) #8	SEC31B (ENSSVLG00005010799) #9	ENSSVLG00005005940 #10	HIF1AN (ENSSVLG00005005917) #11	PAX2 (ENSSVLG00005005719) #12	SLF2 (ENSSVLG00005005553) #13	SEMA4G (ENSSVLG00005005503) #14	MRPL43 (ENSSVLG00005005460) #15	TWNK (ENSSVLG00005005412) #16	LZTS2 (ENSSVLG00005005380) #17	PDZD7 (ENSSVLG00005005347) #18	SFXN3 (ENSSVLG00005005315) #19	KAZALD1 (ENSSVLG00005005289) #20	TLX1 (ENSSVLG00005005266) #21	LBX1 (ENSSVLG00005005245)	BTRC (ENSSVLG00005005205) #22	POLL (ENSSVLG00005005135) #23	DPCD (ENSSVLG00005005104) #24	FBXW4 (ENSSVLG00005005056) #25	FGF8 (ENSSVLG00005005038) #26	OGA (ENSSVLG00005004824) #28	KCNIP2 (ENSSVLG00005004570) #29	ARMH3 (ENSSVLG00005004399) #30	HPS6 (ENSSVLG00005004366) #31	LDB1 (ENSSVLG00005004323) #32	PPRC1 (ENSSVLG00005004252) #33	NOLC1 (ENSSVLG00005004225) #34	ELOVL3 (ENSSVLG00005004199) #36	PITX3 (ENSSVLG00005004181) #37	GBF1 (ENSSVLG00005004145)	NFKB2 (ENSSVLG00005004099)
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Long-tailed chinchilla	MODERN SPECIES	192	WNT8B (ENSCLAG00000008704) #8	ENSCLAG00000008608 #9	NDUFB8 (ENSCLAG00000008248) #10	HIF1AN (ENSCLAG00000008195) #11	PAX2 (ENSCLAG00000007272) #12	SLF2 (ENSCLAG00000003936) #13	SEMA4G (ENSCLAG00000003839) #14	MRPL43 (ENSCLAG00000003510) #15	TWNK (ENSCLAG00000003486) #16	LZTS2 (ENSCLAG00000003292) #17	PDZD7 (ENSCLAG00000003178) #18	SFXN3 (ENSCLAG00000001996) #19	ENSCLAG00000001318 #20	ENSCLAG00000001309 #21	LBX1 (ENSCLAG00000001298)	BTRC (ENSCLAG00000001243) #22	POLL (ENSCLAG00000001165) #23	DPCD (ENSCLAG00000001147) #24	FBXW4 (ENSCLAG00000001132) #25	FGF8 (ENSCLAG00000001075) #26	OGA (ENSCLAG00000001003) #28	KCNIP2 (ENSCLAG00000000954) #29	ARMH3 (ENSCLAG00000001673) #30	HPS6 (ENSCLAG00000001624) #31	LDB1 (ENSCLAG00000001555) #32	PPRC1 (ENSCLAG00000001364) #33	NOLC1 (ENSCLAG00000001046) #34	ELOVL3 (ENSCLAG00000005342) #36	PITX3 (ENSCLAG00000005073) #37	GBF1 (ENSCLAG00000004338)	NFKB2 (ENSCLAG00000004104)
Degu	MODERN SPECIES	83	WNT8B (ENSODEG00000006011) #8	ENSODEG00000005730	NDUFB8 (ENSODEG00000006621) #10	ENSODEG00000007007 #11	PAX2 (ENSODEG00000006975) #12	SLF2 (ENSODEG00000008647) #13	SEMA4G (ENSODEG00000005984) #14	ENSODEG00000006668 #15	TWNK (ENSODEG00000006072) #16	LZTS2 (ENSODEG00000006752) #17	PDZD7 (ENSODEG00000006718) #18	SFXN3 (ENSODEG00000007542) #19	KAZALD1 (ENSODEG00000005804) #20	ENSODEG00000006094 #21	LBX1 (ENSODEG00000006684)	BTRC (ENSODEG00000008464) #22	POLL (ENSODEG00000007469) #23	DPCD (ENSODEG00000005983) #24	FBXW4 (ENSODEG00000007897) #25	FGF8 (ENSODEG00000006423) #26	NPM3 (ENSODEG00000006704) #27	OGA (ENSODEG00000008001) #28	ENSODEG00000019634	KCNIP2 (ENSODEG00000007199) #29	ENSODEG00000010569	ARMH3 (ENSODEG00000007299) #30	ENSODEG00000019424	HPS6 (ENSODEG00000007638) #31	LDB1 (ENSODEG00000009090) #32	ENSODEG00000009568 #33	ENSODEG00000006985 #33
Guinea pig	MODERN SPECIES	11	WNT8B (ENSCPOG00000027283) #8	SEC31B (ENSCPOG00000007432) #9	NDUFB8 (ENSCPOG00000024799) #10	HIF1AN (ENSCPOG00000009881) #11	PAX2 (ENSCPOG00000000939) #12	SLF2 (ENSCPOG00000000940) #13	SEMA4G (ENSCPOG00000036564) #14	MRPL43 (ENSCPOG00000040768) #15	TWNK (ENSCPOG00000000950) #16	LZTS2 (ENSCPOG00000035545) #17	ENSCPOG00000000952 #18	SFXN3 (ENSCPOG00000000955) #19	KAZALD1 (ENSCPOG00000015270) #20	TLX1 (ENSCPOG00000003194) #21	LBX1 (ENSCPOG00000025830)	BTRC (ENSCPOG00000005488) #22	POLL (ENSCPOG00000005493) #23	DPCD (ENSCPOG00000005499) #24	ENSCPOG00000032448 #25	FGF8 (ENSCPOG00000021533) #26	NPM3 (ENSCPOG00000006301) #27	OGA (ENSCPOG00000000219) #28	KCNIP2 (ENSCPOG00000011918) #29	ARMH3 (ENSCPOG00000031847) #30	HPS6 (ENSCPOG00000006084) #31	LDB1 (ENSCPOG00000010311) #32	PPRC1 (ENSCPOG00000032149) #33	NOLC1 (ENSCPOG00000004504) #34	ELOVL3 (ENSCPOG00000014884) #36	PITX3 (ENSCPOG00000036365) #37	GBF1 (ENSCPOG00000004514)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	4	ENSHGLG00000039278 #10	HIF1AN (ENSHGLG00000008386) #11	PAX2 (ENSHGLG00000007584) #12	ENSHGLG00000033080	SLF2 (ENSHGLG00000011302) #13	ENSHGLG00000040204 #15	ENSHGLG00000002240 #16	LZTS2 (ENSHGLG00000039393) #17	ENSHGLG00000035111 #18	PDZD7 (ENSHGLG00000046047) #18	SFXN3 (ENSHGLG00000002107) #19	KAZALD1 (ENSHGLG00000002854) #20	TLX1 (ENSHGLG00000001823) #21	LBX1 (ENSHGLG00000047414)	ENSHGLG00000019498	ENSHGLG00000002588 #22	POLL (ENSHGLG00000019504) #23	DPCD (ENSHGLG00000019507) #24	FBXW4 (ENSHGLG00000018911) #25	FGF8 (ENSHGLG00000013482) #26	NPM3 (ENSHGLG00000049984) #27	OGA (ENSHGLG00000019033) #28	KCNIP2 (ENSHGLG00000019185) #29	ENSHGLG00000043110 #30	ARMH3 (ENSHGLG00000002014) #30	HPS6 (ENSHGLG00000020621) #31	LDB1 (ENSHGLG00000002254) #32	PPRC1 (ENSHGLG00000002783) #33	NOLC1 (ENSHGLG00000003156) #34	ENSHGLG00000049553	ELOVL3 (ENSHGLG00000003511) #36
Naked mole-rat female	MODERN SPECIES		SNAP91 (ENSHGLG00000018839)	PRSS35 (ENSHGLG00000044289)	ENSHGLG00000001766	RWDD2A (ENSHGLG00000038854)	ENSHGLG00000002334	DOP1A (ENSHGLG00000002584)	ENSHGLG00000040976	UBE3D (ENSHGLG00000002791)	ENSHGLG00000020002	ENSHGLG00000019563	ENSHGLG00000037636	TPBG (ENSHGLG00000003190)	ENSHGLG00000003363	ENSHGLG00000032662	ENSHGLG00000036762	ENSHGLG00000032562 #22	ENSHGLG00000002149	ENSHGLG00000002224	ENSHGLG00000002312	ENSHGLG00000002573	ENSHGLG00000002662	CRISP3 (ENSHGLG00000043304)	ENSHGLG00000032826	DEFB110 (ENSHGLG00000004350)	ENSHGLG00000020379	ENSHGLG00000032464	TFAP2D (ENSHGLG00000003984)	TFAP2B (ENSHGLG00000008303)	ENSHGLG00000005244	PKHD1 (ENSHGLG00000018109)	ENSHGLG00000021226
Lagomorpha	ANCESTRAL SPECIES	17	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.a.a ##34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925	ENSGT00940000160968
Rabbit	MODERN SPECIES	9	SEC31B (ENSOCUG00000000988) #9	NDUFB8 (ENSOCUG00000000989) #10	HIF1AN (ENSOCUG00000000991) #11	PAX2 (ENSOCUG00000012860) #12	SLF2 (ENSOCUG00000002728) #13	SEMA4G (ENSOCUG00000002737) #14	MRPL43 (ENSOCUG00000002742) #15	TWNK (ENSOCUG00000002746) #16	LZTS2 (ENSOCUG00000021502) #17	ENSOCUG00000006651 #18	ENSOCUG00000031924 #18	SFXN3 (ENSOCUG00000002751) #19	KAZALD1 (ENSOCUG00000002974) #20	TLX1 (ENSOCUG00000013136) #21	LBX1 (ENSOCUG00000013145)	BTRC (ENSOCUG00000015353) #22	POLL (ENSOCUG00000015364) #23	DPCD (ENSOCUG00000015373) #24	FBXW4 (ENSOCUG00000015386) #25	ENSOCUG00000027864 #26	NPM3 (ENSOCUG00000016819) #27	OGA (ENSOCUG00000002768) #28	KCNIP2 (ENSOCUG00000026348) #29	ARMH3 (ENSOCUG00000002776) #30	LDB1 (ENSOCUG00000025582) #32	PPRC1 (ENSOCUG00000000510) #33	ENSOCUG00000000516 ##34	ELOVL3 (ENSOCUG00000016071) #36	PITX3 (ENSOCUG00000016065) #37	GBF1 (ENSOCUG00000005714)	NFKB2 (ENSOCUG00000005735)
Pika	MODERN SPECIES	604							SLF2 (ENSOPRG00000007048) #13	ENSOPRG00000007068 #14	MRPL43 (ENSOPRG00000007093) #15	TWNK (ENSOPRG00000007100) #16	LZTS2 (ENSOPRG00000007108) #17	ENSOPRG00000007119 #18	KAZALD1 (ENSOPRG00000007134) #20	TLX1 (ENSOPRG00000007137) #21	LBX1 (ENSOPRG00000007142)	BTRC (ENSOPRG00000007146) #22	POLL (ENSOPRG00000007162) #23	DPCD (ENSOPRG00000007167) #24	ENSOPRG00000007176 #25
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000159672 #22
Hedgehog	MODERN SPECIES	6055																BTRC (ENSEEUG00000015173) #22
Common shrew	MODERN SPECIES	4720																BTRC (ENSSARG00000003650) #22	DPCD (ENSSARG00000003692) #24
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Suina	ANCESTRAL SPECIES	6	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Pig	MODERN SPECIES	5	NDUFB8 (ENSSSCG00000006166) #10	HIF1AN (ENSSSCG00000010555) #11	ENSSSCG00000044499	PAX2 (ENSSSCG00000010556) #12	SLF2 (ENSSSCG00000037592) #13	SEMA4G (ENSSSCG00000029533) #14	MRPL43 (ENSSSCG00000010560) #15	TWNK (ENSSSCG00000030428) #16	LZTS2 (ENSSSCG00000021798) #17	ENSSSCG00000010559 #18	ENSSSCG00000053081	SFXN3 (ENSSSCG00000022005) #19	KAZALD1 (ENSSSCG00000022429) #20	TLX1 (ENSSSCG00000010561) #21	LBX1 (ENSSSCG00000022693)	BTRC (ENSSSCG00000010563) #22	ENSSSCG00000044625	POLL (ENSSSCG00000010564) #23	DPCD (ENSSSCG00000010565) #24	FBXW4 (ENSSSCG00000010566) #25	FGF8 (ENSSSCG00000036146) #26	NPM3 (ENSSSCG00000010568) #27	OGA (ENSSSCG00000010569) #28	KCNIP2 (ENSSSCG00000010570) #29	ARMH3 (ENSSSCG00000010571) #30	LDB1 (ENSSSCG00000010574) #32	PPRC1 (ENSSSCG00000010575) #33	NOLC1 (ENSSSCG00000010576) #34	ELOVL3 (ENSSSCG00000010577) #36	PITX3 (ENSSSCG00000010578) #37	GBF1 (ENSSSCG00000010579)
Chacoan peccary	MODERN SPECIES	955	SEC31B (ENSCWAG00000018389) #9	NDUFB8 (ENSCWAG00000018347) #10	HIF1AN (ENSCWAG00000018322) #11	PAX2 (ENSCWAG00000018087) #12	SLF2 (ENSCWAG00000017985) #13	SEMA4G (ENSCWAG00000017948) #14	MRPL43 (ENSCWAG00000017917) #15	TWNK (ENSCWAG00000017826) #16	LZTS2 (ENSCWAG00000017792) #17	ENSCWAG00000017773	PDZD7 (ENSCWAG00000017620) #18	SFXN3 (ENSCWAG00000017574) #19	KAZALD1 (ENSCWAG00000017546) #20	TLX1 (ENSCWAG00000017532) #21	LBX1 (ENSCWAG00000017504)	BTRC (ENSCWAG00000017438) #22	POLL (ENSCWAG00000017186) #23	DPCD (ENSCWAG00000017144) #24	FBXW4 (ENSCWAG00000017072) #25	FGF8 (ENSCWAG00000016899) #26	NPM3 (ENSCWAG00000016863) #27	OGA (ENSCWAG00000016757) #28	KCNIP2 (ENSCWAG00000015234) #29	ARMH3 (ENSCWAG00000015108) #30	HPS6 (ENSCWAG00000015092) #31	LDB1 (ENSCWAG00000015033) #32	PPRC1 (ENSCWAG00000014410) #33	ELOVL3 (ENSCWAG00000014311) #36	PITX3 (ENSCWAG00000014269) #37	GBF1 (ENSCWAG00000014118)	NFKB2 (ENSCWAG00000014044)
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Camelidae	ANCESTRAL SPECIES	4	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Arabian camel	MODERN SPECIES	2	NDUFB8 (ENSCDRG00005018932) #10	HIF1AN (ENSCDRG00005018905) #11	PAX2 (ENSCDRG00005018578) #12	ENSCDRG00005018552	SLF2 (ENSCDRG00005018469) #13	SEMA4G (ENSCDRG00005018391) #14	MRPL43 (ENSCDRG00005018344) #15	TWNK (ENSCDRG00005018275) #16	LZTS2 (ENSCDRG00005018247) #17	ENSCDRG00005018229 #18	ENSCDRG00005018196 #18	SFXN3 (ENSCDRG00005018164) #19	KAZALD1 (ENSCDRG00005018151) #20	TLX1 (ENSCDRG00005018131) #21	LBX1 (ENSCDRG00005018112)	BTRC (ENSCDRG00005017970) #22	POLL (ENSCDRG00005017726) #23	DPCD (ENSCDRG00005017701) #24	FBXW4 (ENSCDRG00005017631) #25	FGF8 (ENSCDRG00005017350) #26	NPM3 (ENSCDRG00005017294) #27	OGA (ENSCDRG00005017195) #28	KCNIP2 (ENSCDRG00005015279) #29	ARMH3 (ENSCDRG00005014932) #30	HPS6 (ENSCDRG00005014897) #31	LDB1 (ENSCDRG00005014831) #32	PPRC1 (ENSCDRG00005014648) #33	NOLC1 (ENSCDRG00005014563) #34	ENSCDRG00005014525	ELOVL3 (ENSCDRG00005014459) #36	PITX3 (ENSCDRG00005014430) #37
Alpaca	MODERN SPECIES	1686																BTRC (ENSVPAG00000003111) #22	POLL (ENSVPAG00000003115) #23	DPCD (ENSVPAG00000003117) #24	ENSVPAG00000003119 #25	NPM3 (ENSVPAG00000003120) #27	OGA (ENSVPAG00000003121) #28	ARMH3 (ENSVPAG00000003122) #30
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Cetacea	ANCESTRAL SPECIES	15	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36
Dolphin	MODERN SPECIES	582															LBX1 (ENSTTRG00000014899)	BTRC (ENSTTRG00000014908) #22	POLL (ENSTTRG00000014923) #23	DPCD (ENSTTRG00000014929) #24	FBXW4 (ENSTTRG00000014933) #25	FGF8 (ENSTTRG00000014939) #26	ENSTTRG00000014942	OGA (ENSTTRG00000014946) #28	KCNIP2 (ENSTTRG00000014952) #29	ARMH3 (ENSTTRG00000014955) #30	ENSTTRG00000014960 #32	PPRC1 (ENSTTRG00000014966) #33	NOLC1 (ENSTTRG00000014974) #34
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00940000154908 #7	ENSGT00940000160584 #8	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36
Vaquita	MODERN SPECIES	7	NDUFB8 (ENSPSNG00000012559) #10	HIF1AN (ENSPSNG00000012648) #11	PAX2 (ENSPSNG00000012715) #12	SLF2 (ENSPSNG00000013212) #13	SEMA4G (ENSPSNG00000013294) #14	MRPL43 (ENSPSNG00000013369) #15	TWNK (ENSPSNG00000013395) #16	LZTS2 (ENSPSNG00000013492) #17	ENSPSNG00000013544 #18	ENSPSNG00000013625 #18	SFXN3 (ENSPSNG00000013687) #19	KAZALD1 (ENSPSNG00000013727) #20	TLX1 (ENSPSNG00000013783) #21	ENSPSNG00000013837	LBX1 (ENSPSNG00000013867)	BTRC (ENSPSNG00000013992) #22	ENSPSNG00000014239	POLL (ENSPSNG00000014325) #23	DPCD (ENSPSNG00000014573) #24	FBXW4 (ENSPSNG00000014655) #25	FGF8 (ENSPSNG00000014763) #26	NPM3 (ENSPSNG00000015111) #27	OGA (ENSPSNG00000015199) #28	KCNIP2 (ENSPSNG00000015521) #29	ARMH3 (ENSPSNG00000016447) #30	HPS6 (ENSPSNG00000016490) #31	LDB1 (ENSPSNG00000016526) #32	PPRC1 (ENSPSNG00000016660) #33	NOLC1 (ENSPSNG00000016800) #34	ELOVL3 (ENSPSNG00000016876) #36	PITX3 (ENSPSNG00000016915) #37
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00940000160584 #8	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT00960000190004 #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37
Beluga whale	MODERN SPECIES	65	HIF1AN (ENSDLEG00000016615) #11	PAX2 (ENSDLEG00000016434) #12	SLF2 (ENSDLEG00000016409) #13	SEMA4G (ENSDLEG00000016385) #14	MRPL43 (ENSDLEG00000016373) #15	TWNK (ENSDLEG00000016357) #16	LZTS2 (ENSDLEG00000016343) #17	ENSDLEG00000016332 #18	ENSDLEG00000016313 #18	SFXN3 (ENSDLEG00000016287) #19	KAZALD1 (ENSDLEG00000016276) #20	TLX1 (ENSDLEG00000016266) #21	ENSDLEG00000016263	LBX1 (ENSDLEG00000016256)	ENSDLEG00000016243	BTRC (ENSDLEG00000014853) #22	POLL (ENSDLEG00000014662) #23	DPCD (ENSDLEG00000014637) #24	FBXW4 (ENSDLEG00000014542) #25	FGF8 (ENSDLEG00000014445) #26	NPM3 (ENSDLEG00000014430) #27	MGEA5 (ENSDLEG00000012761) #28	KCNIP2 (ENSDLEG00000011996) #29	ARMH3 (ENSDLEG00000011308) #30	HPS6 (ENSDLEG00000011254) #31	LDB1 (ENSDLEG00000011231) #32	PPRC1 (ENSDLEG00000011163) #33	ENSDLEG00000011138	NOLC1 (ENSDLEG00000011092) #34	ENSDLEG00000011076 #35	ELOVL3 (ENSDLEG00000011030) #36
Narwhal	MODERN SPECIES	311	WNT8B (ENSMMNG00015021879) #8	NDUFB8 (ENSMMNG00015021899) #10	HIF1AN (ENSMMNG00015021902) #11	ENSMMNG00015012209	SLF2 (ENSMMNG00015012230) #13	SEMA4G (ENSMMNG00015012260) #14	MRPL43 (ENSMMNG00015012273) #15	TWNK (ENSMMNG00015012283) #16	LZTS2 (ENSMMNG00015012307) #17	PDZD7 (ENSMMNG00015012332) #18	SFXN3 (ENSMMNG00015012374) #19	KAZALD1 (ENSMMNG00015012419) #20	TLX1 (ENSMMNG00015012435) #21	ENSMMNG00015012448	LBX1 (ENSMMNG00015012454)	BTRC (ENSMMNG00015012491) #22	ENSMMNG00015012545	POLL (ENSMMNG00015012562) #23	DPCD (ENSMMNG00015012580) #24	FBXW4 (ENSMMNG00015012596) #25	FGF8 (ENSMMNG00015012625) #26	NPM3 (ENSMMNG00015012666) #27	OGA (ENSMMNG00015012693) #28	KCNIP2 (ENSMMNG00015012789) #29	ARMH3 (ENSMMNG00015012888) #30	HPS6 (ENSMMNG00015012924) #31	LDB1 (ENSMMNG00015012934) #32	PPRC1 (ENSMMNG00015012955) #33	NOLC1 (ENSMMNG00015012973) #34	ENSMMNG00015013002	ENSMMNG00015013008 #35
Sperm whale	MODERN SPECIES	12	ENSPCTG00005016969	ENSPCTG00005017035	ENSPCTG00005017133	ERLIN1 (ENSPCTG00005017152)	CHUK (ENSPCTG00005017211)	CWF19L1 (ENSPCTG00005017347)	BLOC1S2 (ENSPCTG00005017426)	SCD (ENSPCTG00005017655) #7	WNT8B (ENSPCTG00005017722) #8	SEC31B (ENSPCTG00005017805) #9	NDUFB8 (ENSPCTG00005017856) #10	HIF1AN (ENSPCTG00005017931) #11	PAX2 (ENSPCTG00005017976) #12	SLF2 (ENSPCTG00005018174) #13	KAZALD1 (ENSPCTG00005018258) #20	BTRC (ENSPCTG00005018325) #22	ENSPCTG00005018571	POLL (ENSPCTG00005018631) #23	DPCD (ENSPCTG00005018790) #24	FBXW4 (ENSPCTG00005018820) #25	ARMH3 (ENSPCTG00005018935) #30	HPS6 (ENSPCTG00005019039) #31	LDB1 (ENSPCTG00005019052) #32	OGA (ENSPCTG00005019093) #28	NOLC1 (ENSPCTG00005019168) #34	ENSPCTG00005019221	ACTR1A (ENSPCTG00005019239)	MFSD13A (ENSPCTG00005019320)	CUEDC2 (ENSPCTG00005019392)	FBXL15 (ENSPCTG00005019435)	PSD (ENSPCTG00005019477)
Blue whale	MODERN SPECIES	7	SEC31B (ENSBMSG00010020186) #9	ENSBMSG00010020139 #10	HIF1AN (ENSBMSG00010020107) #11	PAX2 (ENSBMSG00010019829) #12	SLF2 (ENSBMSG00010019778) #13	SEMA4G (ENSBMSG00010019680) #14	MRPL43 (ENSBMSG00010019656) #15	TWNK (ENSBMSG00010019580) #16	LZTS2 (ENSBMSG00010019532) #17	PDZD7 (ENSBMSG00010019325) #18	SFXN3 (ENSBMSG00010019238) #19	KAZALD1 (ENSBMSG00010019182) #20	TLX1 (ENSBMSG00010019148) #21	LBX1 (ENSBMSG00010019122)	ENSBMSG00010019090	BTRC (ENSBMSG00010018955) #22	POLL (ENSBMSG00010018641) #23	DPCD (ENSBMSG00010018596) #24	FBXW4 (ENSBMSG00010018485) #25	FGF8 (ENSBMSG00010018314) #26	NPM3 (ENSBMSG00010018271) #27	OGA (ENSBMSG00010018215) #28	KCNIP2 (ENSBMSG00010016543) #29	ARMH3 (ENSBMSG00010016376) #30	HPS6 (ENSBMSG00010016356) #31	LDB1 (ENSBMSG00010016310) #32	PPRC1 (ENSBMSG00010016252) #33	ENSBMSG00010016224	NOLC1 (ENSBMSG00010016181) #34	ELOVL3 (ENSBMSG00010016149) #36	PITX3 (ENSBMSG00010016125) #37
Pecora	ANCESTRAL SPECIES	12	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Yarkand deer	MODERN SPECIES	6	WNT8B (ENSCHYG00000007156) #8	SEC31B (ENSCHYG00000007290) #9	ENSCHYG00000008063 #10	HIF1AN (ENSCHYG00000008087) #11	PAX2 (ENSCHYG00000008121) #12	SLF2 (ENSCHYG00000008313) #13	SEMA4G (ENSCHYG00000008501) #14	MRPL43 (ENSCHYG00000008553) #15	TWNK (ENSCHYG00000008578) #16	LZTS2 (ENSCHYG00000008636) #17	PDZD7 (ENSCHYG00000008700) #18	SFXN3 (ENSCHYG00000008801) #19	KAZALD1 (ENSCHYG00000009247) #20	TLX1 (ENSCHYG00000009316) #21	LBX1 (ENSCHYG00000009391)	BTRC (ENSCHYG00000009464) #22	POLL (ENSCHYG00000010092) #23	DPCD (ENSCHYG00000010353) #24	FBXW4 (ENSCHYG00000010417) #25	FGF8 (ENSCHYG00000010585) #26	NPM3 (ENSCHYG00000011000) #27	OGA (ENSCHYG00000011095) #28	KCNIP2 (ENSCHYG00000011315) #29	ARMH3 (ENSCHYG00000011524) #30	HPS6 (ENSCHYG00000011978) #31	LDB1 (ENSCHYG00000011992) #32	PPRC1 (ENSCHYG00000012117) #33	NOLC1 (ENSCHYG00000012710) #34	ELOVL3 (ENSCHYG00000012788) #36	PITX3 (ENSCHYG00000012861) #37	GBF1 (ENSCHYG00000012906)
Percora_a	ANCESTRAL SPECIES	14	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Bovidae	ANCESTRAL SPECIES	24	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Caprinae	ANCESTRAL SPECIES	19	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Goat	MODERN SPECIES	18	WNT8B (ENSCHIG00000022296) #8	SEC31B (ENSCHIG00000014510) #9	NDUFB8 (ENSCHIG00000014213) #10	HIF1AN (ENSCHIG00000015131) #11	PAX2 (ENSCHIG00000026895) #12	SLF2 (ENSCHIG00000020908) #13	SEMA4G (ENSCHIG00000017686) #14	MRPL43 (ENSCHIG00000023474) #15	TWNK (ENSCHIG00000010638) #16	LZTS2 (ENSCHIG00000017763) #17	PDZD7 (ENSCHIG00000003600) #18	SFXN3 (ENSCHIG00000007598) #19	KAZALD1 (ENSCHIG00000020364) #20	TLX1 (ENSCHIG00000017143) #21	LBX1 (ENSCHIG00000023740)	BTRC (ENSCHIG00000016955) #22	POLL (ENSCHIG00000003400) #23	DPCD (ENSCHIG00000020911) #24	FBXW4 (ENSCHIG00000018380) #25	FGF8 (ENSCHIG00000016976) #26	ENSCHIG00000024055 #27	OGA (ENSCHIG00000012695) #28	KCNIP2 (ENSCHIG00000023969) #29	ARMH3 (ENSCHIG00000021008) #30	HPS6 (ENSCHIG00000002581) #31	ENSCHIG00000016117	LDB1 (ENSCHIG00000012111) #32	PPRC1 (ENSCHIG00000011471) #33	NOLC1 (ENSCHIG00000016755) #34	ELOVL3 (ENSCHIG00000020567) #36	PITX3 (ENSCHIG00000005050) #37
Rambouillet Sheep	MODERN SPECIES	14	WNT8B (ENSOARG00020023882) #8	SEC31B (ENSOARG00020023907) #9	NDUFB8 (ENSOARG00020023960) #10	HIF1AN (ENSOARG00020023988) #11	PAX2 (ENSOARG00020024007) #12	SLF2 (ENSOARG00020024229) #13	SEMA4G (ENSOARG00020024295) #14	MRPL43 (ENSOARG00020024355) #15	TWNK (ENSOARG00020024387) #16	LZTS2 (ENSOARG00020024436) #17	ENSOARG00020024454 #18	SFXN3 (ENSOARG00020024496) #19	KAZALD1 (ENSOARG00020024525) #20	TLX1 (ENSOARG00020024541) #21	LBX1 (ENSOARG00020024551)	BTRC (ENSOARG00020024573) #22	POLL (ENSOARG00020024664) #23	DPCD (ENSOARG00020024779) #24	FBXW4 (ENSOARG00020024790) #25	ENSOARG00020024820	FGF8 (ENSOARG00020024835) #26	NPM3 (ENSOARG00020024924) #27	OGA (ENSOARG00020024941) #28	KCNIP2 (ENSOARG00020025029) #29	ARMH3 (ENSOARG00020025366) #30	HPS6 (ENSOARG00020025382) #31	LDB1 (ENSOARG00020025397) #32	PPRC1 (ENSOARG00020025416) #33	NOLC1 (ENSOARG00020025460) #34	ELOVL3 (ENSOARG00020025469) #36	PITX3 (ENSOARG00020025475) #37
Bovinae	ANCESTRAL SPECIES	22	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Bos	ANCESTRAL SPECIES	23	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Bos_a	ANCESTRAL SPECIES	17	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Domestic yak	MODERN SPECIES	17	WNT8B (ENSBGRG00000024358) #8	SEC31B (ENSBGRG00000024463) #9	ENSBGRG00000024877 #10	HIF1AN (ENSBGRG00000024908) #11	ENSBGRG00000024942 #12	SLF2 (ENSBGRG00000025048) #13	SEMA4G (ENSBGRG00000025220) #14	MRPL43 (ENSBGRG00000025253) #15	TWNK (ENSBGRG00000025268) #16	LZTS2 (ENSBGRG00000025304) #17	PDZD7 (ENSBGRG00000025335) #18	SFXN3 (ENSBGRG00000025373) #19	KAZALD1 (ENSBGRG00000025398) #20	TLX1 (ENSBGRG00000025436) #21	LBX1 (ENSBGRG00000025446)	BTRC (ENSBGRG00000025472) #22	POLL (ENSBGRG00000025605) #23	DPCD (ENSBGRG00000025670) #24	FBXW4 (ENSBGRG00000025687) #25	FGF8 (ENSBGRG00000025705) #26	NPM3 (ENSBGRG00000025751) #27	OGA (ENSBGRG00000025769) #28	KCNIP2 (ENSBGRG00000025831) #29	ENSBGRG00000026004	ARMH3 (ENSBGRG00000026018) #30	HPS6 (ENSBGRG00000026028) #31	LDB1 (ENSBGRG00000026032) #32	PPRC1 (ENSBGRG00000026069) #33	NOLC1 (ENSBGRG00000026111) #34	ENSBGRG00000026136	ELOVL3 (ENSBGRG00000026140) #36
Wild yak	MODERN SPECIES	124		WNT8B (ENSBMUG00000003465) #8	SEC31B (ENSBMUG00000003449) #9	ENSBMUG00000003406 #10	HIF1AN (ENSBMUG00000003393) #11	PAX2 (ENSBMUG00000003356) #12	SLF2 (ENSBMUG00000003264) #13	SEMA4G (ENSBMUG00000003213) #14	MRPL43 (ENSBMUG00000003186) #15	TWNK (ENSBMUG00000003170) #16	LZTS2 (ENSBMUG00000003163) #17	PDZD7 (ENSBMUG00000003120) #18	SFXN3 (ENSBMUG00000003051) #19	ENSBMUG00000003033 #20	TLX1 (ENSBMUG00000002998) #21	BTRC (ENSBMUG00000002953) #22	POLL (ENSBMUG00000002781) #23	DPCD (ENSBMUG00000002662) #24	FBXW4 (ENSBMUG00000002636) #25	FGF8 (ENSBMUG00000002582) #26	NPM3 (ENSBMUG00000002562) #27	OGA (ENSBMUG00000002507) #28	KCNIP2 (ENSBMUG00000002276) #29	ARMH3 (ENSBMUG00000002100) #30	HPS6 (ENSBMUG00000002004) #31	LDB1 (ENSBMUG00000001990) #32	PPRC1 (ENSBMUG00000001946) #33	NOLC1 (ENSBMUG00000001853) #34	ELOVL3 (ENSBMUG00000001815) #36	PITX3 (ENSBMUG00000001811) #37	GBF1 (ENSBMUG00000001789)
Bos_b	ANCESTRAL SPECIES	23	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628.m.a.a #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Cow	MODERN SPECIES	18	SEC31B (ENSBTAG00000000090) #9	NDUFB8 (ENSBTAG00000000091) #10	HIF1AN (ENSBTAG00000000092) #11	PAX2 (ENSBTAG00000021566) #12	SLF2 (ENSBTAG00000012077) #13	SEMA4G (ENSBTAG00000018604) #14	MRPL43 (ENSBTAG00000003294) #15	TWNK (ENSBTAG00000003296) #16	LZTS2 (ENSBTAG00000003298) #17	ENSBTAG00000039834 #18	ENSBTAG00000016928 #18	SFXN3 (ENSBTAG00000005015) #19	KAZALD1 (ENSBTAG00000011489) #20	TLX1 (ENSBTAG00000011080) #21	LBX1 (ENSBTAG00000002261)	BTRC (ENSBTAG00000007476) #22	POLL (ENSBTAG00000003576) #23	DPCD (ENSBTAG00000003578) #24	FBXW4 (ENSBTAG00000003579) #25	ENSBTAG00000053939	FGF8 (ENSBTAG00000001530) #26	NPM3 (ENSBTAG00000016335) #27	OGA (ENSBTAG00000016336) #28	KCNIP2 (ENSBTAG00000016343) #29	ARMH3 (ENSBTAG00000013120) #30	HPS6 (ENSBTAG00000021942) #31	LDB1 (ENSBTAG00000005780) #32	PPRC1 (ENSBTAG00000007427) #33	NOLC1 (ENSBTAG00000007435) #34	ELOVL3 (ENSBTAG00000015700) #36	PITX3 (ENSBTAG00000015702) #37
Hybrid Bos Indicus	MODERN SPECIES	18	SCD (ENSBIXG00005011225) #7	WNT8B (ENSBIXG00005011240) #8	SEC31B (ENSBIXG00005001063) #9	ENSBIXG00005011280 #10	HIF1AN (ENSBIXG00005011295) #11	PAX2 (ENSBIXG00005011389) #12	SLF2 (ENSBIXG00005011450) #13	MRPL43 (ENSBIXG00005011491) #15	SEMA4G (ENSBIXG00005011547) #14	LZTS2 (ENSBIXG00005001135) #17	PDZD7 (ENSBIXG00005011644) #18	SFXN3 (ENSBIXG00005011674) #19	KAZALD1 (ENSBIXG00005011702) #20	TLX1 (ENSBIXG00005001152) #21	LBX1 (ENSBIXG00005011727)	BTRC (ENSBIXG00005011868) #22	POLL (ENSBIXG00005000418) #23	DPCD (ENSBIXG00005011989) #24	ENSBIXG00005001225	FBXW4 (ENSBIXG00005012014) #25	FGF8 (ENSBIXG00005012077) #26	NPM3 (ENSBIXG00005012095) #27	OGA (ENSBIXG00005001256) #28	KCNIP2 (ENSBIXG00005012451) #29	ARMH3 (ENSBIXG00005012509) #30	HPS6 (ENSBIXG00005000333) #31	LDB1 (ENSBIXG00005012537) #32	PPRC1 (ENSBIXG00005012646) #33	NOLC1 (ENSBIXG00005005482) #34	ELOVL3 (ENSBIXG00005001400) #36	PITX3 (ENSBIXG00005012731) #37
American bison	MODERN SPECIES	3316	WNT8B (ENSBBBG00000021008) #8	SEC31B (ENSBBBG00000007056) #9	ENSBBBG00000021055 #10	HIF1AN (ENSBBBG00000021073) #11	PAX2 (ENSBBBG00000021192) #12	SLF2 (ENSBBBG00000021234) #13	SEMA4G (ENSBBBG00000007106) #14	MRPL43 (ENSBBBG00000021273) #15	TWNK (ENSBBBG00000008401) #16	LZTS2 (ENSBBBG00000005695) #17	PDZD7 (ENSBBBG00000021381) #18	SFXN3 (ENSBBBG00000021411) #19	KAZALD1 (ENSBBBG00000021426) #20	TLX1 (ENSBBBG00000021434) #21	LBX1 (ENSBBBG00000021437)	BTRC (ENSBBBG00000021525) #22	POLL (ENSBBBG00000021635) #23	DPCD (ENSBBBG00000021651) #24	FBXW4 (ENSBBBG00000021667) #25	FGF8 (ENSBBBG00000005761) #26	NPM3 (ENSBBBG00000021685) #27	OGA (ENSBBBG00000005781) #28	KCNIP2 (ENSBBBG00000022027) #29	ARMH3 (ENSBBBG00000007684) #30	HPS6 (ENSBBBG00000022074) #31	LDB1 (ENSBBBG00000005829) #32	PPRC1 (ENSBBBG00000007281) #33	NOLC1 (ENSBBBG00000005854) #34	ELOVL3 (ENSBBBG00000022200) #36	PITX3 (ENSBBBG00000022213) #37	GBF1 (ENSBBBG00000022275)
Siberian musk deer	MODERN SPECIES	1162	HIF1AN (ENSMMSG00000018273) #11	PAX2 (ENSMMSG00000017916) #12	SLF2 (ENSMMSG00000017739) #13	SEMA4G (ENSMMSG00000017665) #14	MRPL43 (ENSMMSG00000017635) #15	TWNK (ENSMMSG00000017581) #16	LZTS2 (ENSMMSG00000017542) #17	PDZD7 (ENSMMSG00000017297) #18	SFXN3 (ENSMMSG00000017226) #19	KAZALD1 (ENSMMSG00000017194) #20	TLX1 (ENSMMSG00000017162) #21	ENSMMSG00000017131	LBX1 (ENSMMSG00000017109)	ENSMMSG00000017086	ENSMMSG00000017075	BTRC (ENSMMSG00000016899) #22	POLL (ENSMMSG00000016722) #23	DPCD (ENSMMSG00000016659) #24	FBXW4 (ENSMMSG00000016591) #25	FGF8 (ENSMMSG00000016398) #26	NPM3 (ENSMMSG00000023905) #27	OGA (ENSMMSG00000023879) #28	KCNIP2 (ENSMMSG00000023762) #29	ARMH3 (ENSMMSG00000023729) #30	HPS6 (ENSMMSG00000023722) #31	LDB1 (ENSMMSG00000023714) #32	PPRC1 (ENSMMSG00000023667) #33	NOLC1 (ENSMMSG00000023644) #34	ELOVL3 (ENSMMSG00000023638) #36	PITX3 (ENSMMSG00000023635) #37	GBF1 (ENSMMSG00000023605)
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Carnivora	ANCESTRAL SPECIES	16	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Felidae	ANCESTRAL SPECIES	14	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Panthera	ANCESTRAL SPECIES	8	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
leopard	MODERN SPECIES	33	WNT8B (ENSPPRG00000001818) #8	SEC31B (ENSPPRG00000001132) #9	NDUFB8 (ENSPPRG00000000394) #10	HIF1AN (ENSPPRG00000022659) #11	PAX2 (ENSPPRG00000022822) #12	SLF2 (ENSPPRG00000023640) #13	SEMA4G (ENSPPRG00000023921) #14	MRPL43 (ENSPPRG00000024398) #15	TWNK (ENSPPRG00000024792) #16	LZTS2 (ENSPPRG00000024851) #17	PDZD7 (ENSPPRG00000024966) #18	SFXN3 (ENSPPRG00000025064) #19	KAZALD1 (ENSPPRG00000025091) #20	TLX1 (ENSPPRG00000021686) #21	LBX1 (ENSPPRG00000019906)	BTRC (ENSPPRG00000019213) #22	POLL (ENSPPRG00000015944) #23	DPCD (ENSPPRG00000014395) #24	FBXW4 (ENSPPRG00000014010) #25	FGF8 (ENSPPRG00000013495) #26	ENSPPRG00000012611 #27	OGA (ENSPPRG00000012421) #28	KCNIP2 (ENSPPRG00000008687) #29	ARMH3 (ENSPPRG00000006816) #30	LDB1 (ENSPPRG00000004903) #32	PPRC1 (ENSPPRG00000004274) #33	NOLC1 (ENSPPRG00000003072) #34	ELOVL3 (ENSPPRG00000000726) #36	PITX3 (ENSPPRG00000000459) #37	GBF1 (ENSPPRG00000022832)	NFKB2 (ENSPPRG00000024177)
lion	MODERN SPECIES	11	WNT8B (ENSPLOG00000006038) #8	SEC31B (ENSPLOG00000006003) #9	NDUFB8 (ENSPLOG00000005958) #10	HIF1AN (ENSPLOG00000005929) #11	PAX2 (ENSPLOG00000005810) #12	SLF2 (ENSPLOG00000005756) #13	SEMA4G (ENSPLOG00000005704) #14	ENSPLOG00000005682	TWNK (ENSPLOG00000005651) #16	LZTS2 (ENSPLOG00000005627) #17	ENSPLOG00000005593 #18	SFXN3 (ENSPLOG00000005555) #19	KAZALD1 (ENSPLOG00000005533) #20	TLX1 (ENSPLOG00000005518) #21	LBX1 (ENSPLOG00000005507)	BTRC (ENSPLOG00000005315) #22	POLL (ENSPLOG00000005264) #23	DPCD (ENSPLOG00000005244) #24	FBXW4 (ENSPLOG00000005224) #25	FGF8 (ENSPLOG00000005187) #26	NPM3 (ENSPLOG00000005157) #27	OGA (ENSPLOG00000005085) #28	KCNIP2 (ENSPLOG00000004987) #29	ENSPLOG00000019012	ARMH3 (ENSPLOG00000018843) #30	HPS6 (ENSPLOG00000018787) #31	LDB1 (ENSPLOG00000018677) #32	PPRC1 (ENSPLOG00000018611) #33	NOLC1 (ENSPLOG00000018322) #34	ELOVL3 (ENSPLOG00000018268) #36	PITX3 (ENSPLOG00000018227) #37
Tiger	MODERN SPECIES	136	CWF19L1 (ENSPTIG00000009695)	BLOC1S2 (ENSPTIG00000010062)	PKD2L1 (ENSPTIG00000011355)	SCD (ENSPTIG00000012317) #7	SEC31B (ENSPTIG00000012634) #9	NDUFB8 (ENSPTIG00000013500) #10	HIF1AN (ENSPTIG00000014946) #11	PAX2 (ENSPTIG00000015726) #12	SLF2 (ENSPTIG00000017770) #13	SEMA4G (ENSPTIG00000018207) #14	MRPL43 (ENSPTIG00000019483) #15	TWNK (ENSPTIG00000019662) #16	ENSPTIG00000019929 #18	SFXN3 (ENSPTIG00000020192) #19	LBX1 (ENSPTIG00000020484)	BTRC (ENSPTIG00000021271) #22	POLL (ENSPTIG00000021663) #23	DPCD (ENSPTIG00000000972) #24	FBXW4 (ENSPTIG00000004575) #25	NPM3 (ENSPTIG00000005390) #27	OGA (ENSPTIG00000005989) #28	KCNIP2 (ENSPTIG00000009209) #29	ARMH3 (ENSPTIG00000010893) #30	LDB1 (ENSPTIG00000012571) #32	PPRC1 (ENSPTIG00000013709) #33	NOLC1 (ENSPTIG00000014862) #34	ELOVL3 (ENSPTIG00000016855) #36	ENSPTIG00000017198 #37	GBF1 (ENSPTIG00000017555)	ENSPTIG00000017841	PSD (ENSPTIG00000018116)
Cat	MODERN SPECIES	242	WNT8B (ENSFCAG00000006451) #8	SEC31B (ENSFCAG00000006452) #9	NDUFB8 (ENSFCAG00000041098) #10	HIF1AN (ENSFCAG00000024883) #11	PAX2 (ENSFCAG00000011602) #12	SLF2 (ENSFCAG00000030202) #13	SEMA4G (ENSFCAG00000015692) #14	ENSFCAG00000015693	TWNK (ENSFCAG00000015694) #16	LZTS2 (ENSFCAG00000015695) #17	PDZD7 (ENSFCAG00000015696) #18	SFXN3 (ENSFCAG00000015697) #19	KAZALD1 (ENSFCAG00000038365) #20	TLX1 (ENSFCAG00000046742) #21	LBX1 (ENSFCAG00000034106)	BTRC (ENSFCAG00000015700) #22	POLL (ENSFCAG00000015701) #23	DPCD (ENSFCAG00000037081) #24	FBXW4 (ENSFCAG00000015703) #25	FGF8 (ENSFCAG00000007177) #26	NPM3 (ENSFCAG00000007178) #27	OGA (ENSFCAG00000007179) #28	KCNIP2 (ENSFCAG00000013243) #29	ARMH3 (ENSFCAG00000013244) #30	HPS6 (ENSFCAG00000028998) #31	LDB1 (ENSFCAG00000001236) #32	PPRC1 (ENSFCAG00000001238) #33	GBF1 (ENSFCAG00000001241)	PITX3 (ENSFCAG00000026758) #37	NFKB2 (ENSFCAG00000001242)	PSD (ENSFCAG00000001243)
Caniformia	ANCESTRAL SPECIES	13	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00940000160584 #8	ENSGT00390000003175.a.a.b #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Ursidae	ANCESTRAL SPECIES	5	ENSGT00940000160584 #8	ENSGT00390000003175.a.a.b #9	ENSGT00390000000628.p #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Ursus	ANCESTRAL SPECIES	7	ENSGT00940000160584 #8	ENSGT00390000003175.a.a.b #9	ENSGT00390000000628.p #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925	ENSGT00940000160968
Polar bear	MODERN SPECIES	92	CWF19L1 (ENSUMAG00000022786)	BLOC1S2 (ENSUMAG00000022792)	PKD2L1 (ENSUMAG00000022795)	SCD (ENSUMAG00000022802) #7	SEC31B (ENSUMAG00000022806) #9	NDUFB8 (ENSUMAG00000022810) #10	HIF1AN (ENSUMAG00000022811) #11	PAX2 (ENSUMAG00000022813) #12	SLF2 (ENSUMAG00000022840) #13	ENSUMAG00000022956 #14	MRPL43 (ENSUMAG00000022958) #15	TWNK (ENSUMAG00000022959) #16	ENSUMAG00000022963 #18	ENSUMAG00000022970 #18	SFXN3 (ENSUMAG00000022989) #19	BTRC (ENSUMAG00000023002) #22	POLL (ENSUMAG00000023008) #23	DPCD (ENSUMAG00000023012) #24	FBXW4 (ENSUMAG00000023013) #25	NPM3 (ENSUMAG00000023016) #27	OGA (ENSUMAG00000023018) #28	KCNIP2 (ENSUMAG00000023021) #29	ARMH3 (ENSUMAG00000023027) #30	ENSUMAG00000023033	HPS6 (ENSUMAG00000023035) #31	LDB1 (ENSUMAG00000023036) #32	PPRC1 (ENSUMAG00000023041) #33	NOLC1 (ENSUMAG00000023063) #34	ELOVL3 (ENSUMAG00000023071) #36	GBF1 (ENSUMAG00000023098)	NFKB2 (ENSUMAG00000023323)
American black bear	MODERN SPECIES	170													KAZALD1 (ENSUAMG00000024080) #20	TLX1 (ENSUAMG00000024078) #21	LBX1 (ENSUAMG00000024077)	BTRC (ENSUAMG00000024076) #22	POLL (ENSUAMG00000024075) #23	DPCD (ENSUAMG00000024074) #24	FBXW4 (ENSUAMG00000024073) #25	NPM3 (ENSUAMG00000024072) #27	OGA (ENSUAMG00000023914) #28	ENSUAMG00000023912 #30
Giant Panda	MODERN SPECIES	16	SCD (ENSAMEG00000006735) #7	WNT8B (ENSAMEG00000030678) #8	HIF1AN (ENSAMEG00000006629) #11	NDUFB8 (ENSAMEG00000006651) #10	PAX2 (ENSAMEG00000017523) #12	SLF2 (ENSAMEG00000017539) #13	SEMA4G (ENSAMEG00000017555) #14	ENSAMEG00000026650	TWNK (ENSAMEG00000017575) #16	LZTS2 (ENSAMEG00000017581) #17	PDZD7 (ENSAMEG00000017588) #18	SFXN3 (ENSAMEG00000017589) #19	KAZALD1 (ENSAMEG00000017599) #20	TLX1 (ENSAMEG00000017604) #21	LBX1 (ENSAMEG00000025161)	BTRC (ENSAMEG00000017610) #22	POLL (ENSAMEG00000017616) #23	DPCD (ENSAMEG00000017626) #24	FBXW4 (ENSAMEG00000017630) #25	FGF8 (ENSAMEG00000017635) #26	ENSAMEG00000017639 #27	OGA (ENSAMEG00000017642) #28	KCNIP2 (ENSAMEG00000017648) #29	ARMH3 (ENSAMEG00000017666) #30	HPS6 (ENSAMEG00000020223) #31	LDB1 (ENSAMEG00000017674) #32	PPRC1 (ENSAMEG00000017685) #33	NOLC1 (ENSAMEG00000017687) #34	ELOVL3 (ENSAMEG00000026429) #36	PITX3 (ENSAMEG00000017698) #37	GBF1 (ENSAMEG00000017700)
Mustelinae	ANCESTRAL SPECIES	29	ENSGT00940000160584 #8	ENSGT00390000003175.a.a.b #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
American mink	DUPLICATION
American mink	MODERN SPECIES	25	SEC31B (ENSNVIG00000018876) #9	NDUFB8 (ENSNVIG00000018849) #10	HIF1AN (ENSNVIG00000018842) #11	PAX2 (ENSNVIG00000018769) #12	SLF2 (ENSNVIG00000018711) #13	SEMA4G (ENSNVIG00000018660) #14	B1AL05 (ENSNVIG00000018655) #15	TWNK (ENSNVIG00000018632) #16	LZTS2 (ENSNVIG00000018615) #17	ENSNVIG00000018594 #18	SFXN3 (ENSNVIG00000018587) #19	KAZALD1 (ENSNVIG00000018579) #20	TLX1 (ENSNVIG00000018572) #21	ENSNVIG00000018563	LBX1 (ENSNVIG00000018557)	ENSNVIG00000018498 #22	POLL (ENSNVIG00000018469) #23	DPCD (ENSNVIG00000018457) #24	FBXW4 (ENSNVIG00000018442) #25	FGF8 (ENSNVIG00000018394) #26	NPM3 (ENSNVIG00000018364) #27	OGA (ENSNVIG00000018264) #28	KCIP2 (ENSNVIG00000018034) #29	ENSNVIG00000018006	CJ076 (ENSNVIG00000017939) #30	HPS6 (ENSNVIG00000017937) #31	LDB1 (ENSNVIG00000017913) #32	PPRC1 (ENSNVIG00000017896) #33	NOLC1 (ENSNVIG00000017826) #34	ELOV3 (ENSNVIG00000017791) #36	PITX3 (ENSNVIG00000017782) #37
American mink	MODERN SPECIES	128													EPHA5 (ENSNVIG00000019023)	TECRL (ENSNVIG00000018974)	ENSNVIG00000018961	ENSNVIG00000018955 #22	ADGRL3 (ENSNVIG00000017945)
Ferret	MODERN SPECIES	187	SEC31B (ENSMPUG00000016960) #9	NDUFB8 (ENSMPUG00000016959) #10	ENSMPUG00000016956 #11	PAX2 (ENSMPUG00000016955) #12	ENSMPUG00000016954	SLF2 (ENSMPUG00000016953) #13	SEMA4G (ENSMPUG00000016946) #14	MRPL43 (ENSMPUG00000016942) #15	TWNK (ENSMPUG00000016941) #16	LZTS2 (ENSMPUG00000016937) #17	PDZD7 (ENSMPUG00000016931) #18	SFXN3 (ENSMPUG00000016930) #19	KAZALD1 (ENSMPUG00000016929) #20	TLX1 (ENSMPUG00000016927) #21	LBX1 (ENSMPUG00000016926)	BTRC (ENSMPUG00000016923) #22	POLL (ENSMPUG00000016920) #23	DPCD (ENSMPUG00000016919) #24	FBXW4 (ENSMPUG00000016906) #25	FGF8 (ENSMPUG00000016897) #26	NPM3 (ENSMPUG00000016894) #27	OGA (ENSMPUG00000016893) #28	KCNIP2 (ENSMPUG00000016892) #29	ARMH3 (ENSMPUG00000016890) #30	HPS6 (ENSMPUG00000020133) #31	LDB1 (ENSMPUG00000016889) #32	PPRC1 (ENSMPUG00000016888) #33	NOLC1 (ENSMPUG00000016887) #34	ELOVL3 (ENSMPUG00000016886) #36	PITX3 (ENSMPUG00000016885) #37	GBF1 (ENSMPUG00000016883)
Canidae	ANCESTRAL SPECIES	16	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Canis_lupus	ANCESTRAL SPECIES	20	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Dog	MODERN SPECIES	20	WNT8B (ENSCAFG00845016786) #8	SEC31B (ENSCAFG00845017184) #9	NDUFB8 (ENSCAFG00845018078) #10	HIF1AN (ENSCAFG00845018163) #11	PAX2 (ENSCAFG00845018449) #12	SLF2 (ENSCAFG00845018854) #13	SEMA4G (ENSCAFG00845019254) #14	MRPL43 (ENSCAFG00845019486) #15	TWNK (ENSCAFG00845019518) #16	LZTS2 (ENSCAFG00845019571) #17	PDZD7 (ENSCAFG00845019707) #18	SFXN3 (ENSCAFG00845020173) #19	KAZALD1 (ENSCAFG00845020241) #20	TLX1 (ENSCAFG00845020381) #21	LBX1 (ENSCAFG00845020416)	BTRC (ENSCAFG00845020497) #22	POLL (ENSCAFG00845020759) #23	DPCD (ENSCAFG00845020872) #24	FBXW4 (ENSCAFG00845020929) #25	FGF8 (ENSCAFG00845021086) #26	OGA (ENSCAFG00845021211) #27	OGA (ENSCAFG00845021307) #28	KCNIP2 (ENSCAFG00845021527) #29	ARMH3 (ENSCAFG00845022019) #30	HPS6 (ENSCAFG00845022716) #31	LDB1 (ENSCAFG00845022765) #32	PPRC1 (ENSCAFG00845022994) #33	NOLC1 (ENSCAFG00845023156) #34	ELOVL3 (ENSCAFG00845023260) #36	PITX3 (ENSCAFG00845023314) #37	GBF1 (ENSCAFG00845023390)
Dingo	MODERN SPECIES	165	SEC31B (ENSCAFG00020008380) #9	NDUFB8 (ENSCAFG00020008602) #10	HIF1AN (ENSCAFG00020008624) #11	ENSCAFG00020008648 #12	SLF2 (ENSCAFG00020008672) #13	SEMA4G (ENSCAFG00020009043) #14	MRPL43 (ENSCAFG00020009048) #15	TWNK (ENSCAFG00020009050) #16	LZTS2 (ENSCAFG00020009057) #17	ENSCAFG00020009061 #18	ENSCAFG00020009067 #18	SFXN3 (ENSCAFG00020009123) #19	KAZALD1 (ENSCAFG00020009128) #20	TLX1 (ENSCAFG00020009130) #21	LBX1 (ENSCAFG00020009135)	BTRC (ENSCAFG00020009146) #22	POLL (ENSCAFG00020009154) #23	DPCD (ENSCAFG00020009157) #24	FBXW4 (ENSCAFG00020009166) #25	FGF8 (ENSCAFG00020009181) #26	NPM3 (ENSCAFG00020009185) #27	OGA (ENSCAFG00020009186) #28	KCNIP2 (ENSCAFG00020009192) #29	ARMH3 (ENSCAFG00020009246) #30	LDB1 (ENSCAFG00020010016) #32	PPRC1 (ENSCAFG00020010030) #33	NOLC1 (ENSCAFG00020010146) #34	ELOVL3 (ENSCAFG00020010148) #36	PITX3 (ENSCAFG00020010150) #37	ENSCAFG00020010157	ENSCAFG00020010159
Red fox	MODERN SPECIES		WNT8B (ENSVVUG00000024928) #8	NDUFB8 (ENSVVUG00000024929) #10	HIF1AN (ENSVVUG00000024930) #11	ENSVVUG00000024932 #12	ENSVVUG00000000159	SLF2 (ENSVVUG00000000268) #13	SEMA4G (ENSVVUG00000000341) #14	MRPL43 (ENSVVUG00000000360) #15	TWNK (ENSVVUG00000000429) #16	LZTS2 (ENSVVUG00000000572) #17	PDZD7 (ENSVVUG00000000597) #18	SFXN3 (ENSVVUG00000000615) #19	KAZALD1 (ENSVVUG00000000631) #20	TLX1 (ENSVVUG00000000649) #21	LBX1 (ENSVVUG00000000689)	BTRC (ENSVVUG00000000703) #22	POLL (ENSVVUG00000000738) #23	DPCD (ENSVVUG00000000749) #24	FBXW4 (ENSVVUG00000000770) #25	FGF8 (ENSVVUG00000000784) #26	NPM3 (ENSVVUG00000000945) #27	OGA (ENSVVUG00000000965) #28	KCNIP2 (ENSVVUG00000001064) #29	ARMH3 (ENSVVUG00000002381) #30	ENSVVUG00000002549	PPRC1 (ENSVVUG00000002566) #33	LDB1 (ENSVVUG00000002609) #32	NOLC1 (ENSVVUG00000002661) #34	ELOVL3 (ENSVVUG00000002813) #36	PITX3 (ENSVVUG00000002824) #37	GBF1 (ENSVVUG00000002840)
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Greater horseshoe bat	MODERN SPECIES	7	HIF1AN (ENSRFEG00010007855) #11	PAX2 (ENSRFEG00010007445) #12	SLF2 (ENSRFEG00010007066) #13	SEMA4G (ENSRFEG00010007019) #14	MRPL43 (ENSRFEG00010006991) #15	TWNK (ENSRFEG00010006903) #16	LZTS2 (ENSRFEG00010006867) #17	ENSRFEG00010006849	PDZD7 (ENSRFEG00010006815) #18	SFXN3 (ENSRFEG00010006745) #19	KAZALD1 (ENSRFEG00010006705) #20	TLX1 (ENSRFEG00010006681) #21	ENSRFEG00010006650	LBX1 (ENSRFEG00010006637)	ENSRFEG00010006625	BTRC (ENSRFEG00010006446) #22	POLL (ENSRFEG00010006332) #23	DPCD (ENSRFEG00010006295) #24	FBXW4 (ENSRFEG00010006255) #25	FGF8 (ENSRFEG00010006132) #26	NPM3 (ENSRFEG00010006055) #27	OGA (ENSRFEG00010005973) #28	KCNIP2 (ENSRFEG00010005717) #29	ENSRFEG00010005540	ARMH3 (ENSRFEG00010005361) #30	HPS6 (ENSRFEG00010018300) #31	LDB1 (ENSRFEG00010018232) #32	PPRC1 (ENSRFEG00010018145) #33	NOLC1 (ENSRFEG00010018127) #34	ELOVL3 (ENSRFEG00010018094) #36	PITX3 (ENSRFEG00010018052) #37
Microbat	MODERN SPECIES	1099																BTRC (ENSMLUG00000004932) #22	POLL (ENSMLUG00000004944) #23	DPCD (ENSMLUG00000004947) #24	FBXW4 (ENSMLUG00000004952) #25	FGF8 (ENSMLUG00000004959) #26	NPM3 (ENSMLUG00000004961) #27	OGA (ENSMLUG00000004970) #28	KCNIP2 (ENSMLUG00000004987) #29	ARMH3 (ENSMLUG00000004996) #30	LDB1 (ENSMLUG00000009237) #32	PPRC1 (ENSMLUG00000006217) #33	NOLC1 (ENSMLUG00000001726) #34	ELOVL3 (ENSMLUG00000028990) #36	PITX3 (ENSMLUG00000023193) #37	ENSMLUG00000028577	GBF1 (ENSMLUG00000006247)
Megabat	MODERN SPECIES	2006																BTRC (ENSPVAG00000006474) #22	POLL (ENSPVAG00000006478) #23	DPCD (ENSPVAG00000006479) #24	FBXW4 (ENSPVAG00000006480) #25
Equus	ANCESTRAL SPECIES	9	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a.c #36	ENSGT00940000161801 #37	ENSGT00940000156925.k
Donkey	MODERN SPECIES	11	SEC31B (ENSEASG00005008976) #9	NDUFB8 (ENSEASG00005026217) #10	HIF1AN (ENSEASG00005008969) #11	PAX2 (ENSEASG00005008965) #12	SLF2 (ENSEASG00005008951) #13	SEMA4G (ENSEASG00005008933) #14	ENSEASG00005030511	MRPL43 (ENSEASG00005008925) #15	TWNK (ENSEASG00005008922) #16	LZTS2 (ENSEASG00005008920) #17	PDZD7 (ENSEASG00005038524) #18	SFXN3 (ENSEASG00005008915) #19	KAZALD1 (ENSEASG00005008906) #20	TLX1 (ENSEASG00005008902) #21	LBX1 (ENSEASG00005034916)	BTRC (ENSEASG00005008887) #22	POLL (ENSEASG00005008879) #23	DPCD (ENSEASG00005008874) #24	FBXW4 (ENSEASG00005008860) #25	FGF8 (ENSEASG00005008843) #26	NPM3 (ENSEASG00005008834) #27	OGA (ENSEASG00005008004) #28	KCNIP2 (ENSEASG00005007921) #29	ARMH3 (ENSEASG00005007687) #30	HPS6 (ENSEASG00005033362) #31	LDB1 (ENSEASG00005007592) #32	PPRC1 (ENSEASG00005007583) #33	NOLC1 (ENSEASG00005007519) #34	ENSEASG00005010383 #36	ENSEASG00005034292 #37	ENSEASG00005037516 #36
Horse	MODERN SPECIES		SCD (ENSECAG00000014658) #7	WNT8B (ENSECAG00000009521) #8	SEC31B (ENSECAG00000017210) #9	HIF1AN (ENSECAG00000009178) #11	PAX2 (ENSECAG00000021123) #12	SLF2 (ENSECAG00000011200) #13	SEMA4G (ENSECAG00000022499) #14	MRPL43 (ENSECAG00000038363) #15	TWNK (ENSECAG00000017734) #16	LZTS2 (ENSECAG00000013288) #17	PDZD7 (ENSECAG00000012183) #18	SFXN3 (ENSECAG00000019285) #19	KAZALD1 (ENSECAG00000013608) #20	TLX1 (ENSECAG00000013342) #21	LBX1 (ENSECAG00000032593)	BTRC (ENSECAG00000022888) #22	POLL (ENSECAG00000015282) #23	DPCD (ENSECAG00000009848) #24	FBXW4 (ENSECAG00000020477) #25	FGF8 (ENSECAG00000037372) #26	NPM3 (ENSECAG00000007524) #27	OGA (ENSECAG00000018731) #28	ARMH3 (ENSECAG00000020347) #30	HPS6 (ENSECAG00000004595) #31	LDB1 (ENSECAG00000012948) #32	PPRC1 (ENSECAG00000009482) #33	NOLC1 (ENSECAG00000052236) #34	ELOVL3 (ENSECAG00000023578) #36	PITX3 (ENSECAG00000022294) #37	ENSECAG00000047204	GBF1 (ENSECAG00000023593)
Atlantogenata	ANCESTRAL SPECIES	10	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Afrotheria	ANCESTRAL SPECIES	4	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Afrotheria_a	ANCESTRAL SPECIES	4	ENSGT00940000160584 #8	ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Elephant	MODERN SPECIES	3	NDUFB8 (ENSLAFG00000016608) #10	HIF1AN (ENSLAFG00000016613) #11	PAX2 (ENSLAFG00000002388) #12	SLF2 (ENSLAFG00000005877) #13	ENSLAFG00000005967 #14	MRPL43 (ENSLAFG00000028961) #15	TWNK (ENSLAFG00000015859) #16	LZTS2 (ENSLAFG00000009975) #17	ENSLAFG00000032509 #18	ENSLAFG00000026596 #18	SFXN3 (ENSLAFG00000012767) #19	KAZALD1 (ENSLAFG00000004171) #20	ENSLAFG00000030369	TLX1 (ENSLAFG00000004179) #21	LBX1 (ENSLAFG00000012214)	BTRC (ENSLAFG00000017122) #22	POLL (ENSLAFG00000009472) #23	DPCD (ENSLAFG00000009478) #24	FBXW4 (ENSLAFG00000009480) #25	FGF8 (ENSLAFG00000028373) #26	NPM3 (ENSLAFG00000023022) #27	OGA (ENSLAFG00000016050) #28	KCNIP2 (ENSLAFG00000016066) #29	ARMH3 (ENSLAFG00000016076) #30	HPS6 (ENSLAFG00000026941) #31	LDB1 (ENSLAFG00000023028) #32	PPRC1 (ENSLAFG00000014232) #33	NOLC1 (ENSLAFG00000014245) #34	ELOVL3 (ENSLAFG00000006785) #36	PITX3 (ENSLAFG00000006787) #37	GBF1 (ENSLAFG00000006789)
Hyrax	MODERN SPECIES	4971																BTRC (ENSPCAG00000004714) #22	POLL (ENSPCAG00000004785) #23	DPCD (ENSPCAG00000004838) #24	FBXW4 (ENSPCAG00000004870) #25
Tenrec	MODERN SPECIES	6278																BTRC (ENSETEG00000001031) #22
Xenarthra	ANCESTRAL SPECIES	1135																ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25
Armadillo	MODERN SPECIES	1689											TLX1 (ENSDNOG00000039087) #21	ENSDNOG00000004057	LBX1 (ENSDNOG00000032737)	ENSDNOG00000035478	ENSDNOG00000017923	BTRC (ENSDNOG00000019257) #22	POLL (ENSDNOG00000037866) #23	DPCD (ENSDNOG00000042220) #24	FBXW4 (ENSDNOG00000039812) #25
Marsupialia	ANCESTRAL SPECIES		ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000003175.a.a #9	ENSGT00390000000628 #10	ENSGT00940000157409 #11	ENSGT00940000157412.b #12	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a.k #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT00940000159322	ENSGT00510000047951	ENSGT00530000063787.A	ENSGT00940000154903	ENSGT00940000161316	ENSGT00940000172454	ENSGT00940000156835	ENSGT00950000183039.B.b.b	ENSGT00940000158048	ENSGT00940000160813	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a.k #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT00940000159322	ENSGT00510000047951	ENSGT00530000063787.A	ENSGT00940000154903	ENSGT00940000161316	ENSGT00940000172454	ENSGT00940000156835	ENSGT00950000183039.B.b.b	ENSGT00940000158048	ENSGT00940000160813	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a.k #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092 #34	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Common wonbat	MODERN SPECIES	581	ZSCAN2 (ENSVURG00010003426)	SEC31B (ENSVURG00010003319) #9	NDUFB8 (ENSVURG00010003291) #10	HIF1AN (ENSVURG00010003265) #11	ENSVURG00010003240	PAX2 (ENSVURG00010003166) #12	ENSVURG00010003115 #13	SEMA4G (ENSVURG00010003048) #14	MRPL43 (ENSVURG00010003032) #15	TWNK (ENSVURG00010003014) #16	LZTS2 (ENSVURG00010002997) #17	ENSVURG00010002939 #18	KAZALD1 (ENSVURG00010002921) #20	TLX1 (ENSVURG00010002839) #21	LBX1 (ENSVURG00010002823)	BTRC (ENSVURG00010002745) #22	POLL (ENSVURG00010002645) #23	DPCD (ENSVURG00010002630) #24	ENSVURG00010002614 #25	FGF8 (ENSVURG00010002548) #26	NPM3 (ENSVURG00010002534) #27	OGA (ENSVURG00010002511) #28	KCNIP2 (ENSVURG00010002189) #29	ARMH3 (ENSVURG00010002048) #30	HPS6 (ENSVURG00010002006) #31	LDB1 (ENSVURG00010001956) #32	ENSVURG00010001928 #33	NOLC1 (ENSVURG00010001912) #34	ELOVL3 (ENSVURG00010001812) #36	PITX3 (ENSVURG00010001798) #37	GBF1 (ENSVURG00010001734)
koala	MODERN SPECIES	6	SEC31B (ENSPCIG00000001002) #9	NDUFB8 (ENSPCIG00000001035) #10	HIF1AN (ENSPCIG00000001045) #11	PAX2 (ENSPCIG00000001066) #12	ENSPCIG00000001129 #13	SEMA4G (ENSPCIG00000002663) #14	MRPL43 (ENSPCIG00000031987) #15	TWNK (ENSPCIG00000002680) #16	LZTS2 (ENSPCIG00000002692) #17	PDZD7 (ENSPCIG00000002702) #18	ENSPCIG00000002730	ENSPCIG00000002751 #19	KAZALD1 (ENSPCIG00000003284) #20	TLX1 (ENSPCIG00000031947) #21	LBX1 (ENSPCIG00000012981)	BTRC (ENSPCIG00000029037) #22	POLL (ENSPCIG00000029031) #23	DPCD (ENSPCIG00000029028) #24	FBXW4 (ENSPCIG00000029029) #25	FGF8 (ENSPCIG00000009616) #26	OGA (ENSPCIG00000009619) #28	KCNIP2 (ENSPCIG00000029025) #29	ARMH3 (ENSPCIG00000029021) #30	HPS6 (ENSPCIG00000029018) #31	LDB1 (ENSPCIG00000029016) #32	ENSPCIG00000029013 #33	NOLC1 (ENSPCIG00000029012) #34	ELOVL3 (ENSPCIG00000029010) #36	PITX3 (ENSPCIG00000029009) #37	GBF1 (ENSPCIG00000029004)	NFKB2 (ENSPCIG00000028999)
Wallaby	MODERN SPECIES	7319																BTRC (ENSMEUG00000013579) #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000028660	ENSSHAG00000015504	ENSSHAG00000015424 #9	ENSSHAG00000015389 #10	HIF1AN (ENSSHAG00000026157) #11	PAX2 (ENSSHAG00000014328) #12	ENSSHAG00000001085 #13	SEMA4G (ENSSHAG00000024320) #14	MRPL43 (ENSSHAG00000027764) #15	LZTS2 (ENSSHAG00000013716) #17	PDZD7 (ENSSHAG00000013654) #18	SFXN3 (ENSSHAG00000025221) #19	KAZALD1 (ENSSHAG00000031990) #20	TLX1 (ENSSHAG00000026892) #21	LBX1 (ENSSHAG00000012692)	BTRC (ENSSHAG00000010653) #22	POLL (ENSSHAG00000010289) #23	DPCD (ENSSHAG00000025520) #24	FBXW4 (ENSSHAG00000009269) #25	FGF8 (ENSSHAG00000008652) #26	NPM3 (ENSSHAG00000008567) #27	OGA (ENSSHAG00000008257) #28	KCNIP2 (ENSSHAG00000026676) #29	ARMH3 (ENSSHAG00000005390) #30	HPS6 (ENSSHAG00000020530) #31	LDB1 (ENSSHAG00000004146) #32	ENSSHAG00000003350 #33	NOLC1 (ENSSHAG00000002222) #34	ELOVL3 (ENSSHAG00000018892) #36	PITX3 (ENSSHAG00000027003) #37	GBF1 (ENSSHAG00000018856)
Opossum	MODERN SPECIES		PAX2 (ENSMODG00000019353) #12	ENSMODG00000041434	ENSMODG00000012013 #13	SEMA4G (ENSMODG00000011993) #14	MRPL43 (ENSMODG00000011975) #15	TWNK (ENSMODG00000011966) #16	LZTS2 (ENSMODG00000011955) #17	ENSMODG00000011937 #18	ENSMODG00000045652 #18	SFXN3 (ENSMODG00000011922) #19	KAZALD1 (ENSMODG00000011907) #20	TLX1 (ENSMODG00000011900) #21	LBX1 (ENSMODG00000044699)	ENSMODG00000046533	ENSMODG00000027979	BTRC (ENSMODG00000011788) #22	POLL (ENSMODG00000011757) #23	DPCD (ENSMODG00000011742) #24	FBXW4 (ENSMODG00000011732) #25	FGF8 (ENSMODG00000011718) #26	NPM3 (ENSMODG00000011689) #27	OGA (ENSMODG00000011681) #28	KCNIP2 (ENSMODG00000011638) #29	ENSMODG00000019596	ARMH3 (ENSMODG00000011512) #30	HPS6 (ENSMODG00000049767) #31	LDB1 (ENSMODG00000011500) #32	ENSMODG00000011467 #33	NOLC1 (ENSMODG00000011434) #34	PITX3 (ENSMODG00000045989) #37	ENSMODG00000011378 #36
Platypus	MODERN SPECIES	7	NDUFB8 (ENSOANG00000045128) #10	HIF1AN (ENSOANG00000008340) #11	PAX2 (ENSOANG00000013304) #12	ENSOANG00000007329 #13	SEMA4G (ENSOANG00000007328) #14	ENSOANG00000042676	ENSOANG00000007326 #16	ENSOANG00000007325 #16	ENSOANG00000042089 #16	LZTS2 (ENSOANG00000046553) #17	PDZD7 (ENSOANG00000007308) #18	SFXN3 (ENSOANG00000007319) #19	KAZALD1 (ENSOANG00000047060) #20	TLX1 (ENSOANG00000007318) #21	LBX1 (ENSOANG00000044340)	BTRC (ENSOANG00000007316) #22	POLL (ENSOANG00000007315) #23	DPCD (ENSOANG00000045090) #24	FBXW4 (ENSOANG00000007313) #25	FGF8 (ENSOANG00000048473) #26	NPM3 (ENSOANG00000039490) #27	OGA (ENSOANG00000004474) #28	KCNIP2 (ENSOANG00000039579) #29	ARMH3 (ENSOANG00000007830) #30	LDB1 (ENSOANG00000007827) #32	ENSOANG00000007826 #33	NOLC1 (ENSOANG00000007824) #34	ELOVL3 (ENSOANG00000007823) #36	PITX3 (ENSOANG00000039250) #37	GBF1 (ENSOANG00000007818)	NFKB2 (ENSOANG00000006254)
Sauria	ANCESTRAL SPECIES	8	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.b	ENSGT00940000162611.a
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Cryptodira	ANCESTRAL SPECIES	6	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A	ENSGT00940000157322.a
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Emydidae	ANCESTRAL SPECIES	6	ENSGT00940000155737.b	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.b	ENSGT00940000154965.A
painted turtle	MODERN SPECIES	2388	SUFU (ENSCPBG00000002443)	ACTR1A (ENSCPBG00000003255)	MFSD13A (ENSCPBG00000003273)	SLF2 (ENSCPBG00000003306) #13	SEMA4G (ENSCPBG00000003347) #14	MRPL43 (ENSCPBG00000003402) #15	TWNK (ENSCPBG00000003411) #16	LZTS2 (ENSCPBG00000003427) #17	ENSCPBG00000003450 #18	ENSCPBG00000003469 #18	ENSCPBG00000003492	SFXN3 (ENSCPBG00000003501) #19	KAZALD1 (ENSCPBG00000003520) #20	TLX1 (ENSCPBG00000003532) #21	LBX1 (ENSCPBG00000003542)	BTRC (ENSCPBG00000003583) #22	ENSCPBG00000003715	POLL (ENSCPBG00000003750) #23	DPCD (ENSCPBG00000003764) #24	FBXW4 (ENSCPBG00000003783) #25	FGF8 (ENSCPBG00000003804) #26	NPM3 (ENSCPBG00000003817) #27	OGA (ENSCPBG00000003826) #28	KCNIP2 (ENSCPBG00000003838) #29	ARMH3 (ENSCPBG00000003975) #30	HPS6 (ENSCPBG00000005375) #31	ENSCPBG00000005394	LDB1 (ENSCPBG00000005401) #32	PPRC1 (ENSCPBG00000005408) #33	ENSCPBG00000005413	LCOR (ENSCPBG00000005416)
Three-toed box turtle	MODERN SPECIES	39	TRIM8 (ENSTMTG00000003124)	SUFU (ENSTMTG00000003020)	ACTR1A (ENSTMTG00000002990)	MFSD13A (ENSTMTG00000002979)	SLF2 (ENSTMTG00000002972) #13	SEMA4G (ENSTMTG00000002965) #14	MRPL43 (ENSTMTG00000002961) #15	TWNK (ENSTMTG00000002956) #16	LZTS2 (ENSTMTG00000002949) #17	ENSTMTG00000002944 ##18	PDZD7 (ENSTMTG00000002937) #18	SFXN3 (ENSTMTG00000002927) #19	KAZALD1 (ENSTMTG00000002879) #20	TLX1 (ENSTMTG00000002865) #21	LBX1 (ENSTMTG00000002859)	BTRC (ENSTMTG00000002831) #22	ENSTMTG00000002734	POLL (ENSTMTG00000002707) #23	DPCD (ENSTMTG00000002704) #24	FBXW4 (ENSTMTG00000002700) #25	FGF8 (ENSTMTG00000002693) #26	NPM3 (ENSTMTG00000002688) #27	OGA (ENSTMTG00000002679) #28	ARMH3 (ENSTMTG00000002641) #30	HPS6 (ENSTMTG00000002625) #31	LDB1 (ENSTMTG00000002621) #32	PPRC1 (ENSTMTG00000002608) #33	LCOR (ENSTMTG00000002602)	ENSTMTG00000002590	ARHGAP19 (ENSTMTG00000002583)	ZDHHC16 (ENSTMTG00000002566)
Testudinidae	ANCESTRAL SPECIES	9	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00990000203892	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A	ENSGT00940000157322.a
Abingdon island giant tortoise	MODERN SPECIES	1912	SUFU (ENSCABG00000004347)	ACTR1A (ENSCABG00000004345)	MFSD13A (ENSCABG00000004344)	SLF2 (ENSCABG00000004331) #13	SEMA4G (ENSCABG00000004327) #14	MRPL43 (ENSCABG00000004324) #15	TWNK (ENSCABG00000004320) #16	LZTS2 (ENSCABG00000004316) #17	ENSCABG00000004314 #18	ENSCABG00000004313 #18	ENSCABG00000004310	SFXN3 (ENSCABG00000004306) #19	KAZALD1 (ENSCABG00000004291) #20	TLX1 (ENSCABG00000004286) #21	LBX1 (ENSCABG00000004283)	BTRC (ENSCABG00000003380) #22	ENSCABG00000002455	ENSCABG00000002450 #23	ENSCABG00000002449 #23	DPCD (ENSCABG00000002448) #24	FBXW4 (ENSCABG00000002445) #25	FGF8 (ENSCABG00000002441) #26	ENSCABG00000002439	NPM3 (ENSCABG00000002436) #27	OGA (ENSCABG00000002352) #28	ENSCABG00000002340	KCNIP2 (ENSCABG00000002327) #29
Goode s thornscrub tortoise	MODERN SPECIES	21	MFSD13A (ENSGEVG00005005334)	SLF2 (ENSGEVG00005005256) #13	SEMA4G (ENSGEVG00005005132) #14	MRPL43 (ENSGEVG00005005072) #15	TWNK (ENSGEVG00005005053) #16	LZTS2 (ENSGEVG00005005030) #17	ENSGEVG00005005016	PDZD7 (ENSGEVG00005004930) #18	ENSGEVG00005004858	SFXN3 (ENSGEVG00005004813) #19	KAZALD1 (ENSGEVG00005004786) #20	ENSGEVG00005004760	TLX1 (ENSGEVG00005004739) #21	LBX1 (ENSGEVG00005004717)	ENSGEVG00005004693	BTRC (ENSGEVG00005004649) #22	ENSGEVG00005004603	POLL (ENSGEVG00005004570) #23	DPCD (ENSGEVG00005004549) #24	FBXW4 (ENSGEVG00005004522) #25	FGF8 (ENSGEVG00005004467) #26	NPM3 (ENSGEVG00005004443) #27	OGA (ENSGEVG00005004411) #28	KCNIP2 (ENSGEVG00005004222) #29	ARMH3 (ENSGEVG00005003998) #30	HPS6 (ENSGEVG00005003987) #31	LDB1 (ENSGEVG00005003974) #32	ENSGEVG00005003965 #33	ENSGEVG00005003952	LCOR (ENSGEVG00005003931)	SLIT1 (ENSGEVG00005003855)
Chinese turtle	MODERN SPECIES	986												SFXN3 (ENSPSIG00000008833) #19	KAZALD1 (ENSPSIG00000008616) #20	TLX1 (ENSPSIG00000008536) #21	PsLbx1 (ENSPSIG00000001286)	BTRC (ENSPSIG00000007315) #22	ENSPSIG00000006189	ENSPSIG00000001277
Archosauria	ANCESTRAL SPECIES	7	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT01030000235534	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Aves	ANCESTRAL SPECIES	6	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
African ostrich	MODERN SPECIES	290	WBP1L (ENSSCUG00000001977)	ARL3 (ENSSCUG00000001973)	TRIM8 (ENSSCUG00000001970)	SUFU (ENSSCUG00000001964)	ACTR1A (ENSSCUG00000001959)	MFSD13A (ENSSCUG00000001958)	SLF2 (ENSSCUG00000001954) #13	ENSSCUG00000001949	ENSSCUG00000001945 #16	ENSSCUG00000001940 #18	ENSSCUG00000001937	ENSSCUG00000001933 #18	SFXN3 (ENSSCUG00000001926) #19	KAZALD1 (ENSSCUG00000001922) #20	ENSSCUG00000001920	BTRC (ENSSCUG00000001914) #22	ENSSCUG00000001906	POLL (ENSSCUG00000001904) #23	DPCD (ENSSCUG00000001903) #24	FBXW4 (ENSSCUG00000001902) #25	FGF8 (ENSSCUG00000001901) #26	NPM3 (ENSSCUG00000001900) #27	OGA (ENSSCUG00000001899) #28	KCNIP2 (ENSSCUG00000001896) #29	ARMH3 (ENSSCUG00000001895) #30	HPS6 (ENSSCUG00000001892) #31	LDB1 (ENSSCUG00000001889) #32	ENSSCUG00000001887	LCOR (ENSSCUG00000001884)	ARHGAP19 (ENSSCUG00000001882)	RRP12 (ENSSCUG00000001878)
Neognathae	ANCESTRAL SPECIES	7	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT01040000244551	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT01040000244551	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00940000155737.b	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798.d #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A	ENSGT00940000157322.a
Golden eagle	MODERN SPECIES	2	TRIM8 (ENSACCG00020009134)	SUFU (ENSACCG00020009151)	ACTR1A (ENSACCG00020009175)	MFSD13A (ENSACCG00020009198)	ENSACCG00020009209	SLF2 (ENSACCG00020009231) #13	SEMA4G (ENSACCG00020009255) #14	MRPL43 (ENSACCG00020009283) #15	TWNK (ENSACCG00020009294) #16	LZTS2 (ENSACCG00020009312) #17	PDZD7 (ENSACCG00020009355) #18	SFXN3 (ENSACCG00020009385) #19	KAZALD1 (ENSACCG00020009402) #20	TLX1 (ENSACCG00020009411) #21	LBX1 (ENSACCG00020009419)	BTRC (ENSACCG00020009499) #22	ENSACCG00020009569	POLL (ENSACCG00020009601) #23	DPCD (ENSACCG00020009630) #24	FBXW4 (ENSACCG00020009662) #25	FGF8 (ENSACCG00020009686) #26	NPM3 (ENSACCG00020009702) #27	OGA (ENSACCG00020009722) #28	KCNIP2 (ENSACCG00020009741) #29	ARMH3 (ENSACCG00020009789) #30	HPS6 (ENSACCG00020009815) #31	LDB1 (ENSACCG00020009835) #32	PPRC1 (ENSACCG00020009873) #33	ENSACCG00020009903	LCOR (ENSACCG00020009912)	SLIT1 (ENSACCG00020009931)
Kakapo	MODERN SPECIES	22	ARL3 (ENSSHBG00005003201)	TRIM8 (ENSSHBG00005003188)	SUFU (ENSSHBG00005003152)	ACTR1A (ENSSHBG00005003132)	MFSD13A (ENSSHBG00005003113)	SLF2 (ENSSHBG00005003064) #13	SEMA4G (ENSSHBG00005003005) #14	MRPL43 (ENSSHBG00005002979) #15	TWNK (ENSSHBG00005002956) #16	LZTS2 (ENSSHBG00005002935) #17	PDZD7 (ENSSHBG00005002896) #18	SFXN3 (ENSSHBG00005002866) #19	KAZALD1 (ENSSHBG00005002844) #20	TLX1 (ENSSHBG00005002828) #21	LBX1 (ENSSHBG00005002802)	BTRC (ENSSHBG00005002701) #22	ENSSHBG00005002316	POLL (ENSSHBG00005002157) #23	DPCD (ENSSHBG00005002126) #24	FBXW4 (ENSSHBG00005002093) #25	FGF8 (ENSSHBG00005002055) #26	NPM3 (ENSSHBG00005002019) #27	OGA (ENSSHBG00005001995) #28	ENSSHBG00005001961 #29	ARMH3 (ENSSHBG00005001905) #30	HPS6 (ENSSHBG00005001864) #31	LDB1 (ENSSHBG00005001841) #32	PPRC1 (ENSSHBG00005001811) #33	LCOR (ENSSHBG00005001762)	SLIT1 (ENSSHBG00005021002)	ARHGAP19 (ENSSHBG00005020983)
Passeriformes	ANCESTRAL SPECIES	10	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT01040000244551	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Great tit	MODERN SPECIES	26	ARL3 (ENSPMJG00000004786)	TRIM8 (ENSPMJG00000004768)	SUFU (ENSPMJG00000004763)	ACTR1A (ENSPMJG00000004762)	MFSD13A (ENSPMJG00000004758)	SLF2 (ENSPMJG00000004736) #13	SEMA4G (ENSPMJG00000004711) #14	MRPL43 (ENSPMJG00000004697) #15	TWNK (ENSPMJG00000004696) #16	LZTS2 (ENSPMJG00000004695) #17	PDZD7 (ENSPMJG00000004677) #18	SFXN3 (ENSPMJG00000004671) #19	KAZALD1 (ENSPMJG00000004666) #20	TLX1 (ENSPMJG00000004663) #21	LBX1 (ENSPMJG00000004661)	BTRC (ENSPMJG00000004640) #22	ENSPMJG00000004603	POLL (ENSPMJG00000004590) #23	DPCD (ENSPMJG00000004583) #24	FBXW4 (ENSPMJG00000004570) #25	FGF8 (ENSPMJG00000004565) #26	NPM3 (ENSPMJG00000004562) #27	OGA (ENSPMJG00000004530) #28	ENSPMJG00000004497	KCNIP2 (ENSPMJG00000004479) #29	ARMH3 (ENSPMJG00000004471) #30	HPS6 (ENSPMJG00000004470) #31	ENSPMJG00000004456	LDB1 (ENSPMJG00000004435) #32	PPRC1 (ENSPMJG00000004431) #33	LCOR (ENSPMJG00000004409)
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT01040000244551	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Medium ground finch	MODERN SPECIES	3	WBP1L (ENSGFOG00000003125)	SFXN2 (ENSGFOG00000003144) ##19	ARL3 (ENSGFOG00000003169)	TRIM8 (ENSGFOG00000003192)	SUFU (ENSGFOG00000003217)	ACTR1A (ENSGFOG00000003336)	MFSD13A (ENSGFOG00000003413)	ENSGFOG00000003429 #13	SEMA4G (ENSGFOG00000003465) #14	TWNK (ENSGFOG00000003482) #16	ENSGFOG00000003498 #18	ENSGFOG00000003506 #18	ENSGFOG00000003538	SFXN3 (ENSGFOG00000003555) #19	KAZALD1 (ENSGFOG00000003573) #20	BTRC (ENSGFOG00000003584) #22	ENSGFOG00000003597	ENSGFOG00000003604	ENSGFOG00000003629	POLL (ENSGFOG00000003670) #23	DPCD (ENSGFOG00000003687) #24	FBXW4 (ENSGFOG00000003718) #25	FGF8 (ENSGFOG00000003860) #26	NPM3 (ENSGFOG00000003871) #27	OGA (ENSGFOG00000003883) #28	KCNIP2 (ENSGFOG00000003914) #29	ARMH3 (ENSGFOG00000003948) #30	LDB1 (ENSGFOG00000003999) #32	ENSGFOG00000004011 #33	ENSGFOG00000004024	LCOR (ENSGFOG00000004029)
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00940000155737.b	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Zebra finch	MODERN SPECIES	28	ENSTGUG00000024526	SUFU (ENSTGUG00000010131)	ACTR1A (ENSTGUG00000010114)	MFSD13A (ENSTGUG00000010110)	SLF2 (ENSTGUG00000010094) #13	SEMA4G (ENSTGUG00000010077) #14	ENSTGUG00000010071 #15	TWNK (ENSTGUG00000010066) #16	LZTS2 (ENSTGUG00000029397) #17	PDZD7 (ENSTGUG00000010061) #18	SFXN3 (ENSTGUG00000010039) #19	KAZALD1 (ENSTGUG00000010037) #20	ENSTGUG00000027136	TLX1 (ENSTGUG00000010029) #21	LBX1 (ENSTGUG00000010027)	BTRC (ENSTGUG00000010007) #22	ENSTGUG00000009983	POLL (ENSTGUG00000009972) #23	DPCD (ENSTGUG00000009967) #24	FBXW4 (ENSTGUG00000009903) #25	FGF8 (ENSTGUG00000009956) #26	NPM3 (ENSTGUG00000009948) #27	OGA (ENSTGUG00000009938) #28	KCNIP2 (ENSTGUG00000009911) #29	ARMH3 (ENSTGUG00000009880) #30	HPS6 (ENSTGUG00000009875) #31	ENSTGUG00000009862	LDB1 (ENSTGUG00000009855) #32	PPRC1 (ENSTGUG00000009839) #33	LCOR (ENSTGUG00000009834)	SLIT1 (ENSTGUG00000009734)
Common canary	MODERN SPECIES	7	ARL3 (ENSSCAG00000016489)	TRIM8 (ENSSCAG00000016492)	SUFU (ENSSCAG00000016503)	ACTR1A (ENSSCAG00000016521)	MFSD13A (ENSSCAG00000016523)	SLF2 (ENSSCAG00000016525) #13	SEMA4G (ENSSCAG00000016526) #14	MRPL43 (ENSSCAG00000016527) #15	TWNK (ENSSCAG00000016528) #16	PDZD7 (ENSSCAG00000016529) #18	ENSSCAG00000016531	ENSSCAG00000016532	SFXN3 (ENSSCAG00000016535) #19	KAZALD1 (ENSSCAG00000016538) #20	TLX1 (ENSSCAG00000016539) #21	BTRC (ENSSCAG00000016542) #22	ENSSCAG00000016545	POLL (ENSSCAG00000016546) #23	DPCD (ENSSCAG00000016547) #24	FBXW4 (ENSSCAG00000016551) #25	FGF8 (ENSSCAG00000016555) #26	NPM3 (ENSSCAG00000016557) #27	OGA (ENSSCAG00000016559) #28	KCNIP2 (ENSSCAG00000016561) #29	ARMH3 (ENSSCAG00000016565) #30	HPS6 (ENSSCAG00000016571) #31	LDB1 (ENSSCAG00000016573) #32	ENSSCAG00000016575 #33	ENSSCAG00000016579	ENSSCAG00000016580	SLIT1 (ENSSCAG00000016584)
Flycatcher	MODERN SPECIES	25	ARL3 (ENSFALG00000023787)	TRIM8 (ENSFALG00000008714)	SUFU (ENSFALG00000008706)	ACTR1A (ENSFALG00000008698)	MFSD13A (ENSFALG00000008689)	ENSFALG00000008686 #13	SEMA4G (ENSFALG00000008684) #14	MRPL43 (ENSFALG00000023885) #15	TWNK (ENSFALG00000008680) #16	LZTS2 (ENSFALG00000008676) #17	ENSFALG00000028985	PDZD7 (ENSFALG00000008671) #18	SFXN3 (ENSFALG00000008668) #19	KAZALD1 (ENSFALG00000008666) #20	TLX1 (ENSFALG00000008660) #21	BTRC (ENSFALG00000008656) #22	ENSFALG00000008634	POLL (ENSFALG00000008619) #23	DPCD (ENSFALG00000008617) #24	FBXW4 (ENSFALG00000008613) #25	FGF8 (ENSFALG00000024705) #26	NPM3 (ENSFALG00000008586) #27	OGA (ENSFALG00000008580) #28	KCNIP2 (ENSFALG00000008575) #29	ARMH3 (ENSFALG00000008569) #30	HPS6 (ENSFALG00000022918) #31	ENSFALG00000008528	PPRC1 (ENSFALG00000008489) #33	LDB1 (ENSFALG00000008498) #32	LCOR (ENSFALG00000025098)	SLIT1 (ENSFALG00000008472)
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT01040000244551	ENSGT01030000235534	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Phasianidae	ANCESTRAL SPECIES	6	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT01040000244551	ENSGT01030000235534	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698.n #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Japanese quail	MODERN SPECIES	24	SUFU (ENSCJPG00005019984)	ACTR1A (ENSCJPG00005019983)	MFSD13A (ENSCJPG00005019982)	SLF2 (ENSCJPG00005019981) #13	SEMA4G (ENSCJPG00005019979) #14	MRPL43 (ENSCJPG00005019978) #15	TWNK (ENSCJPG00005019977) #16	LZTS2 (ENSCJPG00005019976) #17	ENSCJPG00005019975	PDZD7 (ENSCJPG00005019974) #18	SFXN3 (ENSCJPG00005019973) #19	KAZALD1 (ENSCJPG00005019972) #20	TLX1 (ENSCJPG00005019970) #21	LBX1 (ENSCJPG00005019968)	ENSCJPG00005019967	BTRC (ENSCJPG00005019877) #22	ENSCJPG00005019860	ENSCJPG00005019859 #23	ENSCJPG00005019858 #23	DPCD (ENSCJPG00005019857) #24	FBXW4 (ENSCJPG00005019856) #25	FGF8 (ENSCJPG00005019855) #26	NPM3 (ENSCJPG00005019854) #27	OGA (ENSCJPG00005019752) #28	KCNIP2 (ENSCJPG00005019751) #29	ARMH3 (ENSCJPG00005019742) #30	HPS6 (ENSCJPG00005019741) #31	LDB1 (ENSCJPG00005019740) #32	ENSCJPG00005019739 #33	ENSCJPG00005019738	ENSCJPG00005019737
Phasianidae_b	ANCESTRAL SPECIES	6	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT01040000244551	ENSGT01030000235534	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698.n #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000154965.A	ENSGT00940000157322.a
Turkey	MODERN SPECIES	28	ARL3 (ENSMGAG00000010320)	TRIM8 (ENSMGAG00000010315)	SUFU (ENSMGAG00000010288)	ACTR1A (ENSMGAG00000010274)	MFSD13A (ENSMGAG00000010269)	SLF2 (ENSMGAG00000010255) #13	SEMA4G (ENSMGAG00000010240) #14	TWNK (ENSMGAG00000010237) #16	LZTS2 (ENSMGAG00000010236) #17	ENSMGAG00000018739 ##18	ENSMGAG00000021897	PDZD7 (ENSMGAG00000010230) #18	SFXN3 (ENSMGAG00000022982) #19	KAZALD1 (ENSMGAG00000010203) #20	ENSMGAG00000018253 #21	BTRC (ENSMGAG00000010164) #22	ENSMGAG00000010147	POLL (ENSMGAG00000010132) #23	DPCD (ENSMGAG00000010112) #24	FBXW4 (ENSMGAG00000010100) #25	FGF8 (ENSMGAG00000015335) #26	NPM3 (ENSMGAG00000019749) #27	OGA (ENSMGAG00000010077) #28	KCNIP2 (ENSMGAG00000010045) #29	ARMH3 (ENSMGAG00000009992) #30	HPS6 (ENSMGAG00000002655) #31	ENSMGAG00000002659	LDB1 (ENSMGAG00000009961) #32	PPRC1 (ENSMGAG00000010023) #33	LCOR (ENSMGAG00000009950)	SLIT1 (ENSMGAG00000009859)
Chicken	MODERN SPECIES	35	TRIM8 (ENSGALG00010018608)	SUFU (ENSGALG00010018581)	ACTR1A (ENSGALG00010018561)	MFSD13A (ENSGALG00010018532)	ENSGALG00010018526 #13	SEMA4G (ENSGALG00010018515) #14	ENSGALG00010018510 #15	C10orf2 (ENSGALG00010018482) #16	LZTS2 (ENSGALG00010023177) #17	ENSGALG00010017964	PDZD7 (ENSGALG00010017959) #18	SFXN3 (ENSGALG00010017949) #19	KAZALD1 (ENSGALG00010017786) #20	TLX1 (ENSGALG00010018467) #21	LBX1 (ENSGALG00010019045)	BTRC (ENSGALG00010018103) #22	ENSGALG00010017997	POLL (ENSGALG00010019104) #23	DPCD (ENSGALG00010019139) #24	FBXW4 (ENSGALG00010023185) #25	FGF8 (ENSGALG00010021040) #26	NPM3 (ENSGALG00010021034) #27	MGEA5 (ENSGALG00010021023) #28	KCNIP2 (ENSGALG00010021012) #29	C6H10orf76 (ENSGALG00010020970) #30	HPS6 (ENSGALG00010020949) #31	ENSGALG00010020941	LDB1 (ENSGALG00010020921) #32	PPRC1 (ENSGALG00010020889) #33	LCOR (ENSGALG00010020866)	SLIT1 (ENSGALG00010020778)
Anatidae	ANCESTRAL SPECIES	4	ENSGT00940000155737.b	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00980000202932	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Duck	MODERN SPECIES	24	PCGF6 (ENSAPLG00000026176)	ENSAPLG00000027671	ENSAPLG00000018565	ENSAPLG00000023786	CNNM2 (ENSAPLG00000013829)	BORCS7 (ENSAPLG00000004416)	CYP17A1 (ENSAPLG00000012297)	WBP1L (ENSAPLG00000012879)	SFXN2 (ENSAPLG00000030360) ##19	ARL3 (ENSAPLG00000016017)	TRIM8 (ENSAPLG00000002530)	SUFU (ENSAPLG00000002654)	MFSD13A (ENSAPLG00000003639)	SLF2 (ENSAPLG00000004041) #13	LBX1 (ENSAPLG00000026975)	BTRC (ENSAPLG00000008388) #22	ENSAPLG00000008660	DPCD (ENSAPLG00000010260) #24	POLL (ENSAPLG00000010211) #23	FGF8 (ENSAPLG00000025762) #26	NPM3 (ENSAPLG00000010935) #27	OGA (ENSAPLG00000011067) #28	ARMH3 (ENSAPLG00000011883) #30	HPS6 (ENSAPLG00000012202) #31	ENSAPLG00000012284	ENSAPLG00000028566	ENSAPLG00000019156	LCOR (ENSAPLG00000013561)	RRP12 (ENSAPLG00000014387)	ARHGAP19 (ENSAPLG00000014166)	SLIT1 (ENSAPLG00000013620)
Pink-footed goose	MODERN SPECIES	11	ARL3 (ENSABRG00000007391)	TRIM8 (ENSABRG00000007399)	SUFU (ENSABRG00000007415)	ACTR1A (ENSABRG00000007506)	MFSD13A (ENSABRG00000007521)	SLF2 (ENSABRG00000007530) #13	SEMA4G (ENSABRG00000007538) #14	ENSABRG00000007555	TWNK (ENSABRG00000007559) #16	LZTS2 (ENSABRG00000007569) #17	PDZD7 (ENSABRG00000007581) #18	SFXN3 (ENSABRG00000007596) #19	KAZALD1 (ENSABRG00000007609) #20	ENSABRG00000007618	TLX1 (ENSABRG00000007623) #21	BTRC (ENSABRG00000007647) #22	ENSABRG00000007659	POLL (ENSABRG00000007682) #23	DPCD (ENSABRG00000007691) #24	FBXW4 (ENSABRG00000007699) #25	FGF8 (ENSABRG00000007708) #26	NPM3 (ENSABRG00000007714) #27	OGA (ENSABRG00000007745) #28	KCNIP2 (ENSABRG00000007767) #29	ARMH3 (ENSABRG00000007775) #30	ENSABRG00000007812	LDB1 (ENSABRG00000007841) #32	PPRC1 (ENSABRG00000007859) #33	LCOR (ENSABRG00000007875)	SLIT1 (ENSABRG00000007893)	ENSABRG00000007944
Australian saltwater crocodile	MODERN SPECIES	68	TRIM8 (ENSCPRG00005012943)	SUFU (ENSCPRG00005012955)	ACTR1A (ENSCPRG00005012965)	MFSD13A (ENSCPRG00005012971)	SLF2 (ENSCPRG00005012984) #13	SEMA4G (ENSCPRG00005012989) #14	MRPL43 (ENSCPRG00005012999) #15	TWNK (ENSCPRG00005013007) #16	ENSCPRG00005013009 #17	PDZD7 (ENSCPRG00005013012) #18	SFXN3 (ENSCPRG00005013022) #19	KAZALD1 (ENSCPRG00005013088) #20	TLX1 (ENSCPRG00005013094) #21	LBX1 (ENSCPRG00005013102)	ENSCPRG00005013103	BTRC (ENSCPRG00005013112) #22	ENSCPRG00005013130	POLL (ENSCPRG00005013150) #23	DPCD (ENSCPRG00005013153) #24	ENSCPRG00005013155 #25	ENSCPRG00005013157 #25	FGF8 (ENSCPRG00005013159) #26	NPM3 (ENSCPRG00005013161) #27	OGA (ENSCPRG00005013170) #28	KCNIP2 (ENSCPRG00005013176) #29	ARMH3 (ENSCPRG00005013194) #30	HPS6 (ENSCPRG00005013211) #31	LDB1 (ENSCPRG00005013215) #32	PPRC1 (ENSCPRG00005013227) #33	LCOR (ENSCPRG00005013234)	SLIT1 (ENSCPRG00005013244)
Lepidosauria	ANCESTRAL SPECIES	8	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.b	ENSGT00940000162611.a
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.b	ENSGT00940000162611.a
Laterata	ANCESTRAL SPECIES		ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.b	ENSGT00940000162611.a
Common wall lizard	MODERN SPECIES	13	SUFU (ENSPMRG00000003985)	ACTR1A (ENSPMRG00000004019)	ENSPMRG00000004035	SLF2 (ENSPMRG00000004050) #13	SEMA4G (ENSPMRG00000004128) #14	ENSPMRG00000004260	TWNK (ENSPMRG00000004276) #16	LZTS2 (ENSPMRG00000004294) #17	PDZD7 (ENSPMRG00000004305) #18	ENSPMRG00000004320	ENSPMRG00000004326	SFXN3 (ENSPMRG00000000222) #19	KAZALD1 (ENSPMRG00000000257) #20	TLX1 (ENSPMRG00000000309) #21	LBX1 (ENSPMRG00000000334)	BTRC (ENSPMRG00000000447) #22	ENSPMRG00000000604	POLL (ENSPMRG00000000637) #23	DPCD (ENSPMRG00000000665) #24	FBXW4 (ENSPMRG00000000682) #25	ENSPMRG00000000700	FGF8 (ENSPMRG00000000710) #26	NPM3 (ENSPMRG00000000732) #27	OGA (ENSPMRG00000000747) #28	KCNIP2 (ENSPMRG00000000777) #29	ARMH3 (ENSPMRG00000000804) #30	HPS6 (ENSPMRG00000000861) #31	LDB1 (ENSPMRG00000000892) #32	PPRC1 (ENSPMRG00000000943) #33	ENSPMRG00000000986	ENSPMRG00000001008
Argentine black and white tegu	MODERN SPECIES	48	SUFU (ENSSMRG00000007169)	ACTR1A (ENSSMRG00000007165)	MFSD13A (ENSSMRG00000007161)	ENSSMRG00000007154 #13	ENSSMRG00000007144	SEMA4G (ENSSMRG00000007127) #14	MRPL43 (ENSSMRG00000007125) #15	TWNK (ENSSMRG00000007122) #16	LZTS2 (ENSSMRG00000007114) #17	PDZD7 (ENSSMRG00000007101) #18	ENSSMRG00000007098	SFXN3 (ENSSMRG00000007087) #19	KAZALD1 (ENSSMRG00000007079) #20	TLX1 (ENSSMRG00000007046) #21	LBX1 (ENSSMRG00000007031)	BTRC (ENSSMRG00000007001) #22
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.b	ENSGT00940000162611.a
Elapidae	ANCESTRAL SPECIES	4	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.b	ENSGT00940000162611.a
Elapidae_a	ANCESTRAL SPECIES		ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.b	ENSGT00940000162611.a	ENSGT00940000154965.A
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000235534	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.b	ENSGT00940000162611.a	ENSGT00940000154965.A
Mainland tiger snake	MODERN SPECIES		ARL3 (ENSNSUG00000006546)	TRIM8 (ENSNSUG00000006547)	SUFU (ENSNSUG00000006548)	ACTR1A (ENSNSUG00000006559)	MFSD13A (ENSNSUG00000006576)	SEMA4G (ENSNSUG00000006578) #14	MRPL43 (ENSNSUG00000006581) #15	TWNK (ENSNSUG00000006583) #16	LZTS2 (ENSNSUG00000006586) #17	PDZD7 (ENSNSUG00000006588) #18	ENSNSUG00000006593	SFXN3 (ENSNSUG00000006595) #19	KAZALD1 (ENSNSUG00000006604) #20	TLX1 (ENSNSUG00000006606) #21	LBX1 (ENSNSUG00000006607)	BTRC (ENSNSUG00000006609) #22	ENSNSUG00000006614	ENSNSUG00000006668 #23	ENSNSUG00000006669 #23	DPCD (ENSNSUG00000006670) #24	FBXW4 (ENSNSUG00000006672) #25	FGF8 (ENSNSUG00000006675) #26	NPM3 (ENSNSUG00000006677) #27	OGA (ENSNSUG00000006678) #28	KCNIP2 (ENSNSUG00000006925) #29	ENSNSUG00000006959	ENSNSUG00000007024 #30	ENSNSUG00000007025	ENSNSUG00000007026 #30	HPS6 (ENSNSUG00000007027) #31	LDB1 (ENSNSUG00000007029) #32
Eastern brown snake	MODERN SPECIES	16														TLX1 (ENSPTXG00000018391) #21	LBX1 (ENSPTXG00000018393)	BTRC (ENSPTXG00000018395) #22	ENSPTXG00000018397	POLL (ENSPTXG00000018416) #23	DPCD (ENSPTXG00000018417) #24	FBXW4 (ENSPTXG00000018418) #25	FGF8 (ENSPTXG00000018420) #26	NPM3 (ENSPTXG00000018421) #27	OGA (ENSPTXG00000018422) #28	KCNIP2 (ENSPTXG00000018423) #29	ARMH3 (ENSPTXG00000018430) #30	HPS6 (ENSPTXG00000018431) #31	LDB1 (ENSPTXG00000018432) #32	PPRC1 (ENSPTXG00000018433) #33	ENSPTXG00000018434	LCOR (ENSPTXG00000018435)	SLIT1 (ENSPTXG00000018436)
Blue-lipped sea krait	MODERN SPECIES	5515																BTRC (ENSLLTG00000015936) #22	ENSLLTG00000016911	POLL (ENSLLTG00000016917) #23	DPCD (ENSLLTG00000016918) #24	FBXW4 (ENSLLTG00000016919) #25
Indian cobra	MODERN SPECIES	3	SUFU (ENSNNAG00000014922)	ACTR1A (ENSNNAG00000014936)	MFSD13A (ENSNNAG00000014965)	SLF2 (ENSNNAG00000014985) #13	SEMA4G (ENSNNAG00000015031) #14	ENSNNAG00000015050	TWNK (ENSNNAG00000015073) #16	LZTS2 (ENSNNAG00000015090) #17	PDZD7 (ENSNNAG00000015107) #18	ENSNNAG00000015138	ENSNNAG00000015152	SFXN3 (ENSNNAG00000015203) #19	KAZALD1 (ENSNNAG00000015218) #20	TLX1 (ENSNNAG00000015238) #21	LBX1 (ENSNNAG00000015245)	BTRC (ENSNNAG00000015268) #22	ENSNNAG00000015358	POLL (ENSNNAG00000015413) #23	DPCD (ENSNNAG00000015439) #24	FBXW4 (ENSNNAG00000015475) #25	FGF8 (ENSNNAG00000015504) #26	NPM3 (ENSNNAG00000015516) #27	OGA (ENSNNAG00000015525) #28	KCNIP2 (ENSNNAG00000015571) #29	ARMH3 (ENSNNAG00000015743) #30	HPS6 (ENSNNAG00000015864) #31	ENSNNAG00000015868	LDB1 (ENSNNAG00000015901) #32	PPRC1 (ENSNNAG00000015952) #33	LCOR (ENSNNAG00000016005)	SLIT1 (ENSNNAG00000016033)
Lizard	MODERN SPECIES	853									LZTS2 (ENSACAG00000011076) #17	PDZD7 (ENSACAG00000011099) #18	ENSACAG00000011135	SFXN3 (ENSACAG00000029026) #19	KAZALD1 (ENSACAG00000011169) #20	TLX1 (ENSACAG00000011182) #21	LBX1 (ENSACAG00000022501)	BTRC (ENSACAG00000011203) #22	ENSACAG00000011539	POLL (ENSACAG00000011850) #23	DPCD (ENSACAG00000029359) #24	FBXW4 (ENSACAG00000011888) #25	FGF8 (ENSACAG00000011928) #26	NPM3 (ENSACAG00000011936) #27	OGA (ENSACAG00000011944) #28	KCNIP2 (ENSACAG00000012032) #29	ARMH3 (ENSACAG00000012211) #30	HPS6 (ENSACAG00000012311) #31	ENSACAG00000023496	LDB1 (ENSACAG00000012317) #32	PPRC1 (ENSACAG00000012404) #33	ENSACAG00000021055	ENSACAG00000012444
tuatara	MODERN SPECIES	1056	ACTR1A (ENSSPUG00000011211)	MFSD13A (ENSSPUG00000011253)	ENSSPUG00000011281 #13	ENSSPUG00000011292 #13	SEMA4G (ENSSPUG00000011303) #14	MRPL43 (ENSSPUG00000011319) #15	TWNK (ENSSPUG00000011329) #16	LZTS2 (ENSSPUG00000011340) #17	ENSSPUG00000011356 #18	ENSSPUG00000011397 #18	ENSSPUG00000011481	SFXN3 (ENSSPUG00000011489) #19	KAZALD1 (ENSSPUG00000011500) #20	TLX1 (ENSSPUG00000011511) #21	LBX1 (ENSSPUG00000011521)	BTRC (ENSSPUG00000011559) #22	ENSSPUG00000011646	POLL (ENSSPUG00000011763) #23	DPCD (ENSSPUG00000011780) #24	FBXW4 (ENSSPUG00000011804) #25	FGF8 (ENSSPUG00000011861) #26	NPM3 (ENSSPUG00000011875) #27	OGA (ENSSPUG00000011899) #28	KCNIP2 (ENSSPUG00000011942) #29	ARMH3 (ENSSPUG00000011969) #30	ENSSPUG00000012022	LDB1 (ENSSPUG00000012060) #32	ENSSPUG00000012068 #33	ENSSPUG00000012079 #33	ENSSPUG00000012101	ENSSPUG00000012129
Anura	ANCESTRAL SPECIES	25	ENSGT00940000155737.a.b	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782	ENSGT00940000160317	ENSGT00530000064017.a #13	ENSGT00940000157186 #14	ENSGT00390000015375 #15	ENSGT00390000004495 #16	ENSGT00940000154078.a.a #17	ENSGT00950000183002.C #18	ENSGT01030000234641.b.a.b.a.a #19	ENSGT00530000063555.B #20	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00530000063586.a	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00940000162611.a	ENSGT00940000154965.A
Frog	MODERN SPECIES	7	ENSXETG00000045462	mfsd13a (ENSXETG00000015216)	ENSXETG00000046745	ENSXETG00000049125	slf2 (ENSXETG00000015214) #13	sema4g (ENSXETG00000015209) #14	ENSXETG00000048977	mrpl43 (ENSXETG00000015206) #15	twnk (ENSXETG00000015205) #16	lzts2 (ENSXETG00000015201) #17	pdzd7 (ENSXETG00000021391) #18	sfxn3 (ENSXETG00000021403) #19	kazald1 (ENSXETG00000008045) #20	tlx1 (ENSXETG00000008043) #21	lbx1 (ENSXETG00000040868)	btrc (ENSXETG00000021199) #22	ENSXETG00000047528	slc2a9 (ENSXETG00000021195)	poll (ENSXETG00000032755) #23	dpcd (ENSXETG00000010773) #24	fbxw4 (ENSXETG00000021190) #25	ENSXETG00000044919	fgf8 (ENSXETG00000014474) #26	ENSXETG00000040225	ENSXETG00000042829	npm3 (ENSXETG00000014472) #27	ENSXETG00000048408	oga (ENSXETG00000014468) #28	kcnip2 (ENSXETG00000014462) #29	ENSXETG00000046014	ENSXETG00000048284
Leishan spiny toad	MODERN SPECIES	9	SEMA4G (ENSLLEG00000029525) #14	ENSLLEG00000029542	MRPL43 (ENSLLEG00000029559) #15	TWNK (ENSLLEG00000029570) #16	ENSLLEG00000029581	LZTS2 (ENSLLEG00000029598) #17	ENSLLEG00000029630	PDZD7 (ENSLLEG00000029647) #18	ENSLLEG00000029713	ENSLLEG00000029729	SFXN3 (ENSLLEG00000029770) #19	KAZALD1 (ENSLLEG00000029818) #20	TLX1 (ENSLLEG00000029828) #21	LBX1 (ENSLLEG00000029839)	ENSLLEG00000029846	BTRC (ENSLLEG00000029876) #22	ENSLLEG00000029961	POLL (ENSLLEG00000030007) #23	DPCD (ENSLLEG00000030025) #24	FBXW4 (ENSLLEG00000030048) #25	ENSLLEG00000030073	FGF8 (ENSLLEG00000030080) #26	ENSLLEG00000030089	NPM3 (ENSLLEG00000030101) #27	OGA (ENSLLEG00000005763) #28	KCNIP2 (ENSLLEG00000006545) #29	ENSLLEG00000006620	ENSLLEG00000006641	ENSLLEG00000006720 #30	HPS6 (ENSLLEG00000007212) #31	ENSLLEG00000007323
Coelacanth	MODERN SPECIES	1618																ENSLACG00000005274 #22	slc2a15a (ENSLACG00000003076)
Actinopterygii	ANCESTRAL SPECIES	29		ENSGT00940000162658.a.a	ENSGT00940000157274	ENSGT00940000161556	ENSGT00940000153441.a.b	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000157514.b	ENSGT00940000159406	ENSGT00940000159378	ENSGT01030000234543.B	ENSGT00940000160543	ENSGT00940000182429	ENSGT00940000158698 #21	ENSGT00940000161756	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000159518 #26	ENSGT00390000005029 #25	ENSGT00390000014031 #24	ENSGT00940000158515 #23	ENSGT00950000183109.c.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b	ENSGT00940000154418.a.a	ENSGT00940000158034	ENSGT00940000153342.a	ENSGT00940000166377
Neopterygii	ANCESTRAL SPECIES	33												ENSGT00940000160543	ENSGT01030000234543.B	ENSGT00940000158698 #21	ENSGT00940000164611	ENSGT00940000159672 #22	ENSGT00940000164095	ENSGT00940000159518 #26	ENSGT00390000005029 #25	ENSGT00390000014031 #24	ENSGT00940000158515 #23	ENSGT00950000183109.c.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b	ENSGT00940000154418.a.a	ENSGT00940000158034	ENSGT00940000153342.a	ENSGT00940000166377
Spotted gar	MODERN SPECIES	671	sgpl1 (ENSLOCG00000011521)	neurog3 (ENSLOCG00000011531)	ENSLOCG00000011540	ENSLOCG00000011544	pdlim1 (ENSLOCG00000011548)	SORBS1 (ENSLOCG00000011554)	ANXA7 (ENSLOCG00000011561)	PPP3CB (ENSLOCG00000011581)	ENSLOCG00000011598	CTNNA3 (ENSLOCG00000011612)	LRRTM3 (ENSLOCG00000011620)	CTNNA3 (ENSLOCG00000011625)	KAZALD1 (ENSLOCG00000011635) #20	tlx1 (ENSLOCG00000011642) #21	ENSLOCG00000011648	BTRC (ENSLOCG00000011652) #22	slc2a15a (ENSLOCG00000011671)	fgf8b (ENSLOCG00000011679) #26	fbxw4 (ENSLOCG00000011687) #25	dpcd (ENSLOCG00000011698) #24	poll (ENSLOCG00000011706) #23	wbp1la (ENSLOCG00000011721)	cyp17a1 (ENSLOCG00000011729)	borcs7 (ENSLOCG00000011739)	as3mt (ENSLOCG00000011748)	cnnm2a (ENSLOCG00000011756)	nt5c2b (ENSLOCG00000011770)	inab (ENSLOCG00000011782)	pcgf6 (ENSLOCG00000011792)	taf5 (ENSLOCG00000011799)	atp5md (ENSLOCG00000011809)
Reedfish	MODERN SPECIES	10	ATOH7 (ENSECRG00000007894)	MYPN (ENSECRG00000007869)	HERC4 (ENSECRG00000007826)	cox5b2 (ENSECRG00000007801)	SIRT1 (ENSECRG00000007786)	DNAJC12 (ENSECRG00000007772)	ENSECRG00000007756	ENSECRG00000007746	ENSECRG00000007735	LRRTM3 (ENSECRG00000007728)	ENSECRG00000007719	ENSECRG00000007686	KAZALD1 (ENSECRG00000007668) #20	tlx1 (ENSECRG00000007650) #21	LBX1 (ENSECRG00000007641)	BTRC (ENSECRG00000007567) #22	slc2a15a (ENSECRG00000007530)	fgf8b (ENSECRG00000007513) #26	fbxw4 (ENSECRG00000007486) #25	dpcd (ENSECRG00000007473) #24	poll (ENSECRG00000007457) #23	wbp1la (ENSECRG00000007447)	cyp17a1 (ENSECRG00000007434)	borcs7 (ENSECRG00000007423)	as3mt (ENSECRG00000007410)	cnnm2a (ENSECRG00000007397)	ENSECRG00000007387	nt5c2b (ENSECRG00000007361)	inab (ENSECRG00000007342)	zgc:175214 (ENSECRG00000007332)	pxmp2 (ENSECRG00000007325)
Elephant shark	MODERN SPECIES	2158														xpo7 (ENSCMIG00000012710)	ENSCMIG00000012645	ENSCMIG00000012644 #22