Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00990000203892	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Glires	ANCESTRAL SPECIES	16	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00990000203892	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Rodentia	ANCESTRAL SPECIES	16	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Lesser Egyptian jerboa	MODERN SPECIES	70	Wnt8b (ENSJJAG00000010131) #7	Sec31b (ENSJJAG00000020478) #8	Ndufb8 (ENSJJAG00000021005) #9	Hif1an (ENSJJAG00000013793) #10	Pax2 (ENSJJAG00000000526) #11	Slf2 (ENSJJAG00000023625) #12	Sema4g (ENSJJAG00000000673) #13	Mrpl43 (ENSJJAG00000023922) #14	ENSJJAG00000006388 #15	Lzts2 (ENSJJAG00000015056) #16	ENSJJAG00000014285 #17	Sfxn3 (ENSJJAG00000016145) #18	Kazald1 (ENSJJAG00000021687) #19	ENSJJAG00000006430 #20	Lbx1 (ENSJJAG00000021756) #21	Btrc (ENSJJAG00000011813) #22	Poll (ENSJJAG00000024104) #23	Dpcd (ENSJJAG00000010119) #24	ENSJJAG00000016263 #25	Fgf8 (ENSJJAG00000014440) #26	Npm3 (ENSJJAG00000018907) #27	Oga (ENSJJAG00000020565) #28	Kcnip2 (ENSJJAG00000019358) #29	Armh3 (ENSJJAG00000018861) #30	Hps6 (ENSJJAG00000011662) #31	Ldb1 (ENSJJAG00000012307) #32	ENSJJAG00000024088 #33	ENSJJAG00000005177 #34	Nolc1 (ENSJJAG00000021131) #35	Elovl3 (ENSJJAG00000020437) #36	Pitx3 (ENSJJAG00000020721) #37
Muroidea	ANCESTRAL SPECIES	1	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Muroidea_A	ANCESTRAL SPECIES		ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Prairie vole	MODERN SPECIES	16	Ndufb8 (ENSMOCG00000003247) #9	Hif1an (ENSMOCG00000013701) #10	Pax2 (ENSMOCG00000015583) #11	Slf2 (ENSMOCG00000019122) #12	ENSMOCG00000015291	Sema4g (ENSMOCG00000004639) #13	Mrpl43 (ENSMOCG00000008602) #14	Twnk (ENSMOCG00000004167) #15	Lzts2 (ENSMOCG00000012162) #16	ENSMOCG00000014095 #17	ENSMOCG00000019069 #17	Sfxn3 (ENSMOCG00000022608) #18	Kazald1 (ENSMOCG00000015994) #19	Tlx1 (ENSMOCG00000017096) #20	Lbx1 (ENSMOCG00000018337) #21	Btrc (ENSMOCG00000002451) #22	Poll (ENSMOCG00000006566) #23	Dpcd (ENSMOCG00000013756) #24	Fbxw4 (ENSMOCG00000013178) #25	Fgf8 (ENSMOCG00000021407) #26	Npm3 (ENSMOCG00000013601) #27	Oga (ENSMOCG00000014392) #28	Kcnip2 (ENSMOCG00000022254) #29	Armh3 (ENSMOCG00000011932) #30	Hps6 (ENSMOCG00000001347) #31	ENSMOCG00000004202 #32	ENSMOCG00000014044 #33	ENSMOCG00000018283 #33	Nolc1 (ENSMOCG00000015232) #35	Elovl3 (ENSMOCG00000022790) #36	Pitx3 (ENSMOCG00000012980) #37
Northern American deer mouse	MODERN SPECIES		Sec31b (ENSPEMG00000018861) #8	ENSPEMG00000016062 #9	Hif1an (ENSPEMG00000014638) #10	Pax2 (ENSPEMG00000007884) #11	Slf2 (ENSPEMG00000018671) #12	Sema4g (ENSPEMG00000010019) #13	Mrpl43 (ENSPEMG00000001510) #14	Twnk (ENSPEMG00000013921) #15	Lzts2 (ENSPEMG00000013419) #16	Pdzd7 (ENSPEMG00000004000) #17	ENSPEMG00000030678	Sfxn3 (ENSPEMG00000012869) #18	Kazald1 (ENSPEMG00000018686) #19	Tlx1 (ENSPEMG00000016966) #20	Lbx1 (ENSPEMG00000026119) #21	Btrc (ENSPEMG00000014260) #22	Poll (ENSPEMG00000006876) #23	Dpcd (ENSPEMG00000014479) #24	Fbxw4 (ENSPEMG00000024901) #25	Fgf8 (ENSPEMG00000012905) #26	Npm3 (ENSPEMG00000007731) #27	Oga (ENSPEMG00000008883) #28	Kcnip2 (ENSPEMG00000015045) #29	Armh3 (ENSPEMG00000014466) #30	Hps6 (ENSPEMG00000003992) #31	Ldb1 (ENSPEMG00000011489) #32	Pprc1 (ENSPEMG00000016590) #33	ENSPEMG00000026626	Elovl3 (ENSPEMG00000000778) #36	Pitx3 (ENSPEMG00000026373) #37	Gbf1 (ENSPEMG00000018772)
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000160584 #7	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Chinese hamster chok1gshd	MODERN SPECIES	215	Wnt8b (ENSCGRG00001020386) #7	Sec31b (ENSCGRG00001008897) #8	Ndufb8 (ENSCGRG00001002142) #9	Hif1an (ENSCGRG00001019981) #10	Pax2 (ENSCGRG00001019089) #11	Slf2 (ENSCGRG00001014230) #12	Sema4g (ENSCGRG00001007429) #13	Mrpl43 (ENSCGRG00001003475) #14	Twnk (ENSCGRG00001000710) #15	Lzts2 (ENSCGRG00001023049) #16	Pdzd7 (ENSCGRG00001017672) #17	Sfxn3 (ENSCGRG00001015591) #18	Kazald1 (ENSCGRG00001000227) #19	Tlx1 (ENSCGRG00001021053) #20	Lbx1 (ENSCGRG00001017540) #21	Btrc (ENSCGRG00001015459) #22	Poll (ENSCGRG00001010513) #23	Dpcd (ENSCGRG00001005917) #24	Fbxw4 (ENSCGRG00001003996) #25	Fgf8 (ENSCGRG00001015246) #26	Npm3 (ENSCGRG00001013345) #27	Oga (ENSCGRG00001020553) #28	Kcnip2 (ENSCGRG00001019478) #29	Armh3 (ENSCGRG00001015570) #30	Hps6 (ENSCGRG00001010957) #31	Ldb1 (ENSCGRG00001020743) #32	Pprc1 (ENSCGRG00001011726) #33	Nolc1 (ENSCGRG00001009806) #35	ELOVL3 (ENSCGRG00001005008) #36	Pitx3 (ENSCGRG00001024147) #37	Gbf1 (ENSCGRG00001022494)
Golden Hamster	MODERN SPECIES	617	Wnt8b (ENSMAUG00000017837) #7	Sec31b (ENSMAUG00000019690) #8	Ndufb8 (ENSMAUG00000020368) #9	Hif1an (ENSMAUG00000019619) #10	Pax2 (ENSMAUG00000015931) #11	Slf2 (ENSMAUG00000017620) #12	Sema4g (ENSMAUG00000016054) #13	Mrpl43 (ENSMAUG00000015594) #14	Twnk (ENSMAUG00000015403) #15	Lzts2 (ENSMAUG00000018041) #16	ENSMAUG00000015875 #17	Sfxn3 (ENSMAUG00000017975) #18	Kazald1 (ENSMAUG00000017475) #19	Tlx1 (ENSMAUG00000015538) #20	Lbx1 (ENSMAUG00000015198) #21	Btrc (ENSMAUG00000016001) #22	Poll (ENSMAUG00000014674) #23	Dpcd (ENSMAUG00000017884) #24	ENSMAUG00000015787 #25	ENSMAUG00000015569	Fgf8 (ENSMAUG00000016383) #26	Npm3 (ENSMAUG00000015218) #27	Oga (ENSMAUG00000015052) #28	Kcnip2 (ENSMAUG00000019652) #29	Armh3 (ENSMAUG00000019449) #30	Hps6 (ENSMAUG00000002039) #31	Ldb1 (ENSMAUG00000018515) #32	Pprc1 (ENSMAUG00000016674) #33	Elovl3 (ENSMAUG00000013792) #36	Pitx3 (ENSMAUG00000015434) #37	ENSMAUG00000017791
Murinae	ANCESTRAL SPECIES		ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00990000203892	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801.d #37	ENSGT00940000156925
Mus	ANCESTRAL SPECIES		ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00990000203892	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801.d #37	ENSGT00940000156925
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000169317	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00990000203892	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a.p #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801.d #37	ENSGT00940000156925
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000169317	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00990000203892	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a.p #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801.d #37	ENSGT00940000156925
Mouse	MODERN SPECIES	10	Sec31b (ENSMUSG00000051984) #8	Gm20538 (ENSMUSG00000091471)	Ndufb8 (ENSMUSG00000025204) #9	Hif1an (ENSMUSG00000036450) #10	Pax2 (ENSMUSG00000004231) #11	Slf2 (ENSMUSG00000036097) #12	Sema4g (ENSMUSG00000025207) #13	Mrpl43 (ENSMUSG00000025208) #14	Twnk (ENSMUSG00000025209) #15	Lzts2 (ENSMUSG00000035342) #16	Pdzd7 (ENSMUSG00000074818) #17	Sfxn3 (ENSMUSG00000025212) #18	Kazald1 (ENSMUSG00000025213) #19	Tlx1 (ENSMUSG00000025215) #20	Lbx1 (ENSMUSG00000025216) #21	Btrc (ENSMUSG00000025217) #22	Poll (ENSMUSG00000025218) #23	Dpcd (ENSMUSG00000041035) #24	Fbxw4 (ENSMUSG00000040913) #25	Fgf8 (ENSMUSG00000025219) #26	Npm3 (ENSMUSG00000056209) #27	Oga (ENSMUSG00000025220) #28	Kcnip2 (ENSMUSG00000025221) #29	Armh3 (ENSMUSG00000039901) #30	Hps6 (ENSMUSG00000074811) #31	Ldb1 (ENSMUSG00000025223) #32	Pprc1 (ENSMUSG00000055491) #33	Nolc1 (ENSMUSG00000015176) #35	Elovl3 (ENSMUSG00000038754) #36	Pitx3 (ENSMUSG00000025229) #37	Gbf1 (ENSMUSG00000025224)
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000169317	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00990000203892	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a.p #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801.d #37	ENSGT00940000156925
spretus	MODERN SPECIES	10	Sec31b (MGP_SPRETEiJ_G0023921) #8	MGP_SPRETEiJ_G0023922	Ndufb8 (MGP_SPRETEiJ_G0023923) #9	Hif1an (MGP_SPRETEiJ_G0023924) #10	Pax2 (MGP_SPRETEiJ_G0023925) #11	Slf2 (MGP_SPRETEiJ_G0023926) #12	Sema4g (MGP_SPRETEiJ_G0023927) #13	Mrpl43 (MGP_SPRETEiJ_G0023928) #14	Twnk (MGP_SPRETEiJ_G0023929) #15	Lzts2 (MGP_SPRETEiJ_G0023930) #16	Pdzd7 (MGP_SPRETEiJ_G0023931) #17	Sfxn3 (MGP_SPRETEiJ_G0023932) #18	Kazald1 (MGP_SPRETEiJ_G0023933) #19	Tlx1 (MGP_SPRETEiJ_G0023934) #20	Lbx1 (MGP_SPRETEiJ_G0023935) #21	Btrc (MGP_SPRETEiJ_G0023936) #22	Poll (MGP_SPRETEiJ_G0023937) #23	Dpcd (MGP_SPRETEiJ_G0023938) #24	MGP_SPRETEiJ_G0023939 #25	Fgf8 (MGP_SPRETEiJ_G0023940) #26	Npm3 (MGP_SPRETEiJ_G0023941) #27	Oga (MGP_SPRETEiJ_G0023942) #28	Kcnip2 (MGP_SPRETEiJ_G0023943) #29	Armh3 (MGP_SPRETEiJ_G0023944) #30	Hps6 (MGP_SPRETEiJ_G0023945) #31	Ldb1 (MGP_SPRETEiJ_G0023946) #32	Pprc1 (MGP_SPRETEiJ_G0023947) #33	Nolc1 (MGP_SPRETEiJ_G0023948) #35	Elovl3 (MGP_SPRETEiJ_G0023949) #36	Pitx3 (MGP_SPRETEiJ_G0023950) #37	Gbf1 (MGP_SPRETEiJ_G0023951)
Steppe mouse	MODERN SPECIES	3317	Sec31b (ENSMSIG00000013336) #8	Ndufb8 (ENSMSIG00000013308) #9	Hif1an (ENSMSIG00000013295) #10	Pax2 (ENSMSIG00000013194) #11	Slf2 (ENSMSIG00000013125) #12	Sema4g (ENSMSIG00000013048) #13	Mrpl43 (ENSMSIG00000013030) #14	Twnk (ENSMSIG00000013010) #15	Lzts2 (ENSMSIG00000012984) #16	ENSMSIG00000012980	Pdzd7 (ENSMSIG00000012912) #17	Sfxn3 (ENSMSIG00000012828) #18	Kazald1 (ENSMSIG00000012802) #19	Tlx1 (ENSMSIG00000012781) #20	Lbx1 (ENSMSIG00000012769) #21	Btrc (ENSMSIG00000012680) #22	Poll (ENSMSIG00000012645) #23	ENSMSIG00000012629 #24	ENSMSIG00000012591 #25	Fgf8 (ENSMSIG00000012521) #26	Npm3 (ENSMSIG00000012497) #27	Oga (ENSMSIG00000012429) #28	ENSMSIG00000011884 #29	Armh3 (ENSMSIG00000011813) #30	Hps6 (ENSMSIG00000011802) #31	Ldb1 (ENSMSIG00000011766) #32	Pprc1 (ENSMSIG00000011750) #33	Nolc1 (ENSMSIG00000011702) #35	Elovl3 (ENSMSIG00000011691) #36	Pitx3 (ENSMSIG00000011679) #37	Gbf1 (ENSMSIG00000011585)
Ryukyu mouse	MODERN SPECIES	10	Sec31b (MGP_CAROLIEiJ_G0023000) #8	MGP_CAROLIEiJ_G0023001	Ndufb8 (MGP_CAROLIEiJ_G0023002) #9	Hif1an (MGP_CAROLIEiJ_G0023003) #10	Pax2 (MGP_CAROLIEiJ_G0023004) #11	Slf2 (MGP_CAROLIEiJ_G0023005) #12	Sema4g (MGP_CAROLIEiJ_G0023006) #13	Mrpl43 (MGP_CAROLIEiJ_G0023007) #14	Twnk (MGP_CAROLIEiJ_G0023008) #15	Lzts2 (MGP_CAROLIEiJ_G0023009) #16	Pdzd7 (MGP_CAROLIEiJ_G0023010) #17	Sfxn3 (MGP_CAROLIEiJ_G0023011) #18	Kazald1 (MGP_CAROLIEiJ_G0023012) #19	Tlx1 (MGP_CAROLIEiJ_G0023013) #20	Lbx1 (MGP_CAROLIEiJ_G0023014) #21	Btrc (MGP_CAROLIEiJ_G0023015) #22	Poll (MGP_CAROLIEiJ_G0023016) #23	Dpcd (MGP_CAROLIEiJ_G0023017) #24	Fbxw4 (MGP_CAROLIEiJ_G0023018) #25	Fgf8 (MGP_CAROLIEiJ_G0023019) #26	Npm3 (MGP_CAROLIEiJ_G0023020) #27	Oga (MGP_CAROLIEiJ_G0023021) #28	Kcnip2 (MGP_CAROLIEiJ_G0023022) #29	Armh3 (MGP_CAROLIEiJ_G0023023) #30	Hps6 (MGP_CAROLIEiJ_G0023024) #31	Ldb1 (MGP_CAROLIEiJ_G0023025) #32	Pprc1 (MGP_CAROLIEiJ_G0023026) #33	Nolc1 (MGP_CAROLIEiJ_G0023027) #35	Elovl3 (MGP_CAROLIEiJ_G0023028) #36	Pitx3 (MGP_CAROLIEiJ_G0023029) #37	Gbf1 (MGP_CAROLIEiJ_G0023030)
Shrew mouse	MODERN SPECIES		MGP_PahariEiJ_G0014490	MGP_PahariEiJ_G0014491	Ndufb8 (MGP_PahariEiJ_G0014492) #9	Hif1an (MGP_PahariEiJ_G0014493) #10	Pax2 (MGP_PahariEiJ_G0014494) #11	Slf2 (MGP_PahariEiJ_G0014495) #12	Sema4g (MGP_PahariEiJ_G0014496) #13	Mrpl43 (MGP_PahariEiJ_G0014497) #14	Twnk (MGP_PahariEiJ_G0014498) #15	MGP_PahariEiJ_G0014499 #16	Pdzd7 (MGP_PahariEiJ_G0014500) #17	Sfxn3 (MGP_PahariEiJ_G0014501) #18	Kazald1 (MGP_PahariEiJ_G0014502) #19	Tlx1 (MGP_PahariEiJ_G0014503) #20	Lbx1 (MGP_PahariEiJ_G0014504) #21	Btrc (MGP_PahariEiJ_G0014505) #22	Poll (MGP_PahariEiJ_G0014506) #23	Dpcd (MGP_PahariEiJ_G0014507) #24	MGP_PahariEiJ_G0014508 #25	Fgf8 (MGP_PahariEiJ_G0014509) #26	Npm3 (MGP_PahariEiJ_G0014510) #27	Oga (MGP_PahariEiJ_G0014511) #28	Kcnip2 (MGP_PahariEiJ_G0014512) #29	Armh3 (MGP_PahariEiJ_G0014513) #30	Hps6 (MGP_PahariEiJ_G0014514) #31	Ldb1 (MGP_PahariEiJ_G0014515) #32	Pprc1 (MGP_PahariEiJ_G0014516) #33	Nolc1 (MGP_PahariEiJ_G0014517) #35	Elovl3 (MGP_PahariEiJ_G0014518) #36	Pitx3 (MGP_PahariEiJ_G0014519) #37	Gbf1 (MGP_PahariEiJ_G0014520)
Rat	MODERN SPECIES		Sec31b (ENSRNOG00000025781) #8	Ndufb8 (ENSRNOG00000014078) #9	Hif1an (ENSRNOG00000014234) #10	Pax2 (ENSRNOG00000014253) #11	Slf2 (ENSRNOG00000014482) #12	AC121209.1 (ENSRNOG00000036588)	Sema4g (ENSRNOG00000014650) #13	Mrpl43 (ENSRNOG00000014890) #14	Twnk (ENSRNOG00000014935) #15	Lzts2 (ENSRNOG00000014969) #16	Pdzd7 (ENSRNOG00000032946) #17	Sfxn3 (ENSRNOG00000015442) #18	Kazald1 (ENSRNOG00000016058) #19	Tlx1 (ENSRNOG00000016120) #20	Lbx1 (ENSRNOG00000025520) #21	Btrc (ENSRNOG00000016280) #22	Poll (ENSRNOG00000016748) #23	Dpcd (ENSRNOG00000017241) #24	Fbxw4 (ENSRNOG00000046211) #25	Fgf8 (ENSRNOG00000017524) #26	Npm3 (ENSRNOG00000017622) #27	Oga (ENSRNOG00000017822) #28	Kcnip2 (ENSRNOG00000018018) #29	Armh3 (ENSRNOG00000025523) #30	Hps6 (ENSRNOG00000018433) #31	Ldb1 (ENSRNOG00000018468) #32	Pprc1 (ENSRNOG00000018561) #33	Nolc1 (ENSRNOG00000018704) #35	Elovl3 (ENSRNOG00000019124) #36	Pitx3 (ENSRNOG00000019194) #37	Gbf1 (ENSRNOG00000026048)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1300	Sec31b (ENSNGAG00000003078) #8	Ndufb8 (ENSNGAG00000022265) #9	Hif1an (ENSNGAG00000022464) #10	Pax2 (ENSNGAG00000011967) #11	Slf2 (ENSNGAG00000022141) #12	Sema4g (ENSNGAG00000014131) #13	Mrpl43 (ENSNGAG00000023476) #14	Twnk (ENSNGAG00000023645) #15	Lzts2 (ENSNGAG00000023942) #16	ENSNGAG00000004602 #17	Sfxn3 (ENSNGAG00000017442) #18	Kazald1 (ENSNGAG00000011414) #19	Tlx1 (ENSNGAG00000024255) #20	Lbx1 (ENSNGAG00000023979) #21	ENSNGAG00000023625	Btrc (ENSNGAG00000001803) #22	Poll (ENSNGAG00000021402) #23	Dpcd (ENSNGAG00000015959) #24	Fbxw4 (ENSNGAG00000022749) #25	Fgf8 (ENSNGAG00000018999) #26	ENSNGAG00000022833 #27	Oga (ENSNGAG00000011804) #28	Kcnip2 (ENSNGAG00000024132) #29	Armh3 (ENSNGAG00000023147) #30	Hps6 (ENSNGAG00000012214) #31	ENSNGAG00000021169	Ldb1 (ENSNGAG00000024157) #32	Pprc1 (ENSNGAG00000016516) #33	Nolc1 (ENSNGAG00000024139) #35	Elovl3 (ENSNGAG00000013825) #36	Pitx3 (ENSNGAG00000021500) #37
Kangaroo rat	MODERN SPECIES	355	Wnt8b (ENSDORG00000000610) #7	Sec31b (ENSDORG00000000124) #8	Ndufb8 (ENSDORG00000006217) #9	Hif1an (ENSDORG00000026469) #10	Pax2 (ENSDORG00000006193) #11	Slf2 (ENSDORG00000004458) #12	Sema4g (ENSDORG00000004459) #13	Mrpl43 (ENSDORG00000023986) #14	Twnk (ENSDORG00000004461) #15	Lzts2 (ENSDORG00000016411) #16	ENSDORG00000016413 #17	Sfxn3 (ENSDORG00000016415) #18	Kazald1 (ENSDORG00000016417) #19	ENSDORG00000025952 #20	Lbx1 (ENSDORG00000029567) #21	Btrc (ENSDORG00000014204) #22	Poll (ENSDORG00000024173) #23	Dpcd (ENSDORG00000014209) #24	Fbxw4 (ENSDORG00000014212) #25	Fgf8 (ENSDORG00000029227) #26	Npm3 (ENSDORG00000003491) #27	Oga (ENSDORG00000003493) #28	Kcnip2 (ENSDORG00000003495) #29	Armh3 (ENSDORG00000003496) #30	ENSDORG00000023337	Hps6 (ENSDORG00000028123) #31	Ldb1 (ENSDORG00000003498) #32	Pprc1 (ENSDORG00000001046) #33	Nolc1 (ENSDORG00000001056) #35	Elovl3 (ENSDORG00000027255) #36	Pitx3 (ENSDORG00000023993) #37
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Marmotini	ANCESTRAL SPECIES	16	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT00990000203892	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Marmotini_b	ANCESTRAL SPECIES	76	ENSGT00940000160584 #7	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409.e #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Squirrel	MODERN SPECIES	200	WNT8B (ENSSTOG00000022425) #7	SEC31B (ENSSTOG00000009253) #8	NDUFB8 (ENSSTOG00000020727) #9	ENSSTOG00000009302 #10	PAX2 (ENSSTOG00000011575) #11	SLF2 (ENSSTOG00000008951) #12	SEMA4G (ENSSTOG00000008994) #13	MRPL43 (ENSSTOG00000009016) #14	TWNK (ENSSTOG00000009030) #15	LZTS2 (ENSSTOG00000015232) #16	PDZD7 (ENSSTOG00000009046) #17	SFXN3 (ENSSTOG00000026614) #18	KAZALD1 (ENSSTOG00000015240) #19	ENSSTOG00000023842 #20	LBX1 (ENSSTOG00000006491) #21	BTRC (ENSSTOG00000022481) #22	POLL (ENSSTOG00000011485) #23	DPCD (ENSSTOG00000011490) #24	FBXW4 (ENSSTOG00000011495) #25	FGF8 (ENSSTOG00000023351) #26	NPM3 (ENSSTOG00000022621) #27	ENSSTOG00000032901 #28	KCNIP2 (ENSSTOG00000021030) #29	ARMH3 (ENSSTOG00000015633) #30	HPS6 (ENSSTOG00000024918) #31	LDB1 (ENSSTOG00000002139) #32	ENSSTOG00000034359 #33	ENSSTOG00000002156 #33	NOLC1 (ENSSTOG00000002168) #35	ELOVL3 (ENSSTOG00000015013) #36	PITX3 (ENSSTOG00000015025) #37
Arctic ground squirrel	MODERN SPECIES	373	NDUFB8 (ENSUPAG00010010693) #9	ENSUPAG00010010677 #10	PAX2 (ENSUPAG00010010652) #11	SLF2 (ENSUPAG00010010631) #12	SEMA4G (ENSUPAG00010010602) #13	MRPL43 (ENSUPAG00010010598) #14	TWNK (ENSUPAG00010010588) #15	LZTS2 (ENSUPAG00010010572) #16	ENSUPAG00010010561 #17	ENSUPAG00010010444 #17	SFXN3 (ENSUPAG00010010359) #18	KAZALD1 (ENSUPAG00010010340) #19	TLX1 (ENSUPAG00010010336) #20	LBX1 (ENSUPAG00010010328) #21	ENSUPAG00010010321	BTRC (ENSUPAG00010010245) #22	POLL (ENSUPAG00010010241) #23	DPCD (ENSUPAG00010010220) #24	FBXW4 (ENSUPAG00010010202) #25	FGF8 (ENSUPAG00010010083) #26	NPM3 (ENSUPAG00010010073) #27	OGA (ENSUPAG00010010052) #28	KCNIP2 (ENSUPAG00010009866) #29	ARMH3 (ENSUPAG00010009848) #30	HPS6 (ENSUPAG00010009845) #31	ENSUPAG00010009826 #32	PPRC1 (ENSUPAG00010009814) #33	NOLC1 (ENSUPAG00010009783) #35
Alpin marmot	MODERN SPECIES	39	NDUFB8 (ENSMMMG00000023049) #9	HIF1AN (ENSMMMG00000023051) #10	PAX2 (ENSMMMG00000023055) #11	SLF2 (ENSMMMG00000023066) #12	SEMA4G (ENSMMMG00000023078) #13	MRPL43 (ENSMMMG00000023087) #14	TWNK (ENSMMMG00000023092) #15	ENSMMMG00000023095 #16	ENSMMMG00000023099 #17	ENSMMMG00000023144 #17	ENSMMMG00000023146	SFXN3 (ENSMMMG00000023149) #18	KAZALD1 (ENSMMMG00000023167) #19	ENSMMMG00000023172 #20	LBX1 (ENSMMMG00000023177) #21	BTRC (ENSMMMG00000023182) #22	POLL (ENSMMMG00000023200) #23	DPCD (ENSMMMG00000023210) #24	FBXW4 (ENSMMMG00000023212) #25	FGF8 (ENSMMMG00000023215) #26	NPM3 (ENSMMMG00000023217) #27	OGA (ENSMMMG00000023220) #28	KCNIP2 (ENSMMMG00000023225) #29	ARMH3 (ENSMMMG00000023233) #30	HPS6 (ENSMMMG00000023243) #31	LDB1 (ENSMMMG00000023248) #32	PPRC1 (ENSMMMG00000023259) #33	NOLC1 (ENSMMMG00000023274) #35	ELOVL3 (ENSMMMG00000023279) #36	PITX3 (ENSMMMG00000023281) #37	GBF1 (ENSMMMG00000023283)
Eurasian red squirrel	MODERN SPECIES	13	WNT8B (ENSSVLG00005010847) #7	SEC31B (ENSSVLG00005010799) #8	ENSSVLG00005005940 #9	HIF1AN (ENSSVLG00005005917) #10	PAX2 (ENSSVLG00005005719) #11	SLF2 (ENSSVLG00005005553) #12	SEMA4G (ENSSVLG00005005503) #13	MRPL43 (ENSSVLG00005005460) #14	TWNK (ENSSVLG00005005412) #15	LZTS2 (ENSSVLG00005005380) #16	PDZD7 (ENSSVLG00005005347) #17	SFXN3 (ENSSVLG00005005315) #18	KAZALD1 (ENSSVLG00005005289) #19	TLX1 (ENSSVLG00005005266) #20	LBX1 (ENSSVLG00005005245) #21	BTRC (ENSSVLG00005005205) #22	POLL (ENSSVLG00005005135) #23	DPCD (ENSSVLG00005005104) #24	FBXW4 (ENSSVLG00005005056) #25	FGF8 (ENSSVLG00005005038) #26	OGA (ENSSVLG00005004824) #28	KCNIP2 (ENSSVLG00005004570) #29	ARMH3 (ENSSVLG00005004399) #30	HPS6 (ENSSVLG00005004366) #31	LDB1 (ENSSVLG00005004323) #32	PPRC1 (ENSSVLG00005004252) #33	NOLC1 (ENSSVLG00005004225) #35	ELOVL3 (ENSSVLG00005004199) #36	PITX3 (ENSSVLG00005004181) #37	GBF1 (ENSSVLG00005004145)	NFKB2 (ENSSVLG00005004099)
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000160584 #7	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000160584 #7	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00940000160584 #7	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925
Long-tailed chinchilla	MODERN SPECIES	192	WNT8B (ENSCLAG00000008704) #7	ENSCLAG00000008608 #8	NDUFB8 (ENSCLAG00000008248) #9	HIF1AN (ENSCLAG00000008195) #10	PAX2 (ENSCLAG00000007272) #11	SLF2 (ENSCLAG00000003936) #12	SEMA4G (ENSCLAG00000003839) #13	MRPL43 (ENSCLAG00000003510) #14	TWNK (ENSCLAG00000003486) #15	LZTS2 (ENSCLAG00000003292) #16	PDZD7 (ENSCLAG00000003178) #17	SFXN3 (ENSCLAG00000001996) #18	ENSCLAG00000001318 #19	ENSCLAG00000001309 #20	LBX1 (ENSCLAG00000001298) #21	BTRC (ENSCLAG00000001243) #22	POLL (ENSCLAG00000001165) #23	DPCD (ENSCLAG00000001147) #24	FBXW4 (ENSCLAG00000001132) #25	FGF8 (ENSCLAG00000001075) #26	OGA (ENSCLAG00000001003) #28	KCNIP2 (ENSCLAG00000000954) #29	ARMH3 (ENSCLAG00000001673) #30	HPS6 (ENSCLAG00000001624) #31	LDB1 (ENSCLAG00000001555) #32	PPRC1 (ENSCLAG00000001364) #33	NOLC1 (ENSCLAG00000001046) #35	ELOVL3 (ENSCLAG00000005342) #36	PITX3 (ENSCLAG00000005073) #37	GBF1 (ENSCLAG00000004338)	NFKB2 (ENSCLAG00000004104)
Degu	MODERN SPECIES	83	WNT8B (ENSODEG00000006011) #7	ENSODEG00000005730	NDUFB8 (ENSODEG00000006621) #9	ENSODEG00000007007 #10	PAX2 (ENSODEG00000006975) #11	SLF2 (ENSODEG00000008647) #12	SEMA4G (ENSODEG00000005984) #13	ENSODEG00000006668 #14	TWNK (ENSODEG00000006072) #15	LZTS2 (ENSODEG00000006752) #16	PDZD7 (ENSODEG00000006718) #17	SFXN3 (ENSODEG00000007542) #18	KAZALD1 (ENSODEG00000005804) #19	ENSODEG00000006094 #20	LBX1 (ENSODEG00000006684) #21	BTRC (ENSODEG00000008464) #22	POLL (ENSODEG00000007469) #23	DPCD (ENSODEG00000005983) #24	FBXW4 (ENSODEG00000007897) #25	FGF8 (ENSODEG00000006423) #26	NPM3 (ENSODEG00000006704) #27	OGA (ENSODEG00000008001) #28	ENSODEG00000019634	KCNIP2 (ENSODEG00000007199) #29	ENSODEG00000010569	ARMH3 (ENSODEG00000007299) #30	ENSODEG00000019424	HPS6 (ENSODEG00000007638) #31	LDB1 (ENSODEG00000009090) #32	ENSODEG00000009568 #33	ENSODEG00000006985 #33
Guinea pig	MODERN SPECIES	11	WNT8B (ENSCPOG00000027283) #7	SEC31B (ENSCPOG00000007432) #8	NDUFB8 (ENSCPOG00000024799) #9	HIF1AN (ENSCPOG00000009881) #10	PAX2 (ENSCPOG00000000939) #11	SLF2 (ENSCPOG00000000940) #12	SEMA4G (ENSCPOG00000036564) #13	MRPL43 (ENSCPOG00000040768) #14	TWNK (ENSCPOG00000000950) #15	LZTS2 (ENSCPOG00000035545) #16	ENSCPOG00000000952 #17	SFXN3 (ENSCPOG00000000955) #18	KAZALD1 (ENSCPOG00000015270) #19	TLX1 (ENSCPOG00000003194) #20	LBX1 (ENSCPOG00000025830) #21	BTRC (ENSCPOG00000005488) #22	POLL (ENSCPOG00000005493) #23	DPCD (ENSCPOG00000005499) #24	ENSCPOG00000032448 #25	FGF8 (ENSCPOG00000021533) #26	NPM3 (ENSCPOG00000006301) #27	OGA (ENSCPOG00000000219) #28	KCNIP2 (ENSCPOG00000011918) #29	ARMH3 (ENSCPOG00000031847) #30	HPS6 (ENSCPOG00000006084) #31	LDB1 (ENSCPOG00000010311) #32	PPRC1 (ENSCPOG00000032149) #33	NOLC1 (ENSCPOG00000004504) #35	ELOVL3 (ENSCPOG00000014884) #36	PITX3 (ENSCPOG00000036365) #37	GBF1 (ENSCPOG00000004514)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	4	ENSHGLG00000039278 #9	HIF1AN (ENSHGLG00000008386) #10	PAX2 (ENSHGLG00000007584) #11	ENSHGLG00000033080	SLF2 (ENSHGLG00000011302) #12	ENSHGLG00000040204 #14	ENSHGLG00000002240 #15	LZTS2 (ENSHGLG00000039393) #16	ENSHGLG00000035111 #17	PDZD7 (ENSHGLG00000046047) #17	SFXN3 (ENSHGLG00000002107) #18	KAZALD1 (ENSHGLG00000002854) #19	TLX1 (ENSHGLG00000001823) #20	LBX1 (ENSHGLG00000047414) #21	ENSHGLG00000019498	ENSHGLG00000002588 #22	POLL (ENSHGLG00000019504) #23	DPCD (ENSHGLG00000019507) #24	FBXW4 (ENSHGLG00000018911) #25	FGF8 (ENSHGLG00000013482) #26	NPM3 (ENSHGLG00000049984) #27	OGA (ENSHGLG00000019033) #28	KCNIP2 (ENSHGLG00000019185) #29	ENSHGLG00000043110 #30	ARMH3 (ENSHGLG00000002014) #30	HPS6 (ENSHGLG00000020621) #31	LDB1 (ENSHGLG00000002254) #32	PPRC1 (ENSHGLG00000002783) #33	NOLC1 (ENSHGLG00000003156) #35	ENSHGLG00000049553	ELOVL3 (ENSHGLG00000003511) #36
Naked mole-rat female	MODERN SPECIES		SNAP91 (ENSHGLG00000018839)	PRSS35 (ENSHGLG00000044289)	ENSHGLG00000001766	RWDD2A (ENSHGLG00000038854)	ENSHGLG00000002334	DOP1A (ENSHGLG00000002584)	ENSHGLG00000040976	UBE3D (ENSHGLG00000002791)	ENSHGLG00000020002	ENSHGLG00000019563	ENSHGLG00000037636	TPBG (ENSHGLG00000003190)	ENSHGLG00000003363	ENSHGLG00000032662	ENSHGLG00000036762	ENSHGLG00000032562 #22	ENSHGLG00000002149	ENSHGLG00000002224	ENSHGLG00000002312	ENSHGLG00000002573	ENSHGLG00000002662	CRISP3 (ENSHGLG00000043304)	ENSHGLG00000032826	DEFB110 (ENSHGLG00000004350)	ENSHGLG00000020379	ENSHGLG00000032464	TFAP2D (ENSHGLG00000003984)	TFAP2B (ENSHGLG00000008303)	ENSHGLG00000005244	PKHD1 (ENSHGLG00000018109)	ENSHGLG00000021226
Lagomorpha	ANCESTRAL SPECIES	17	ENSGT00940000160584 #7	ENSGT00390000003175.a.a #8	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.a.a ##35	ENSGT01050000244965.a #36	ENSGT00940000161801 #37	ENSGT00940000156925	ENSGT00940000160968
Rabbit	MODERN SPECIES	9	SEC31B (ENSOCUG00000000988) #8	NDUFB8 (ENSOCUG00000000989) #9	HIF1AN (ENSOCUG00000000991) #10	PAX2 (ENSOCUG00000012860) #11	SLF2 (ENSOCUG00000002728) #12	SEMA4G (ENSOCUG00000002737) #13	MRPL43 (ENSOCUG00000002742) #14	TWNK (ENSOCUG00000002746) #15	LZTS2 (ENSOCUG00000021502) #16	ENSOCUG00000006651 #17	ENSOCUG00000031924 #17	SFXN3 (ENSOCUG00000002751) #18	KAZALD1 (ENSOCUG00000002974) #19	TLX1 (ENSOCUG00000013136) #20	LBX1 (ENSOCUG00000013145) #21	BTRC (ENSOCUG00000015353) #22	POLL (ENSOCUG00000015364) #23	DPCD (ENSOCUG00000015373) #24	FBXW4 (ENSOCUG00000015386) #25	ENSOCUG00000027864 #26	NPM3 (ENSOCUG00000016819) #27	OGA (ENSOCUG00000002768) #28	KCNIP2 (ENSOCUG00000026348) #29	ARMH3 (ENSOCUG00000002776) #30	LDB1 (ENSOCUG00000025582) #32	PPRC1 (ENSOCUG00000000510) #33	ENSOCUG00000000516 ##35	ELOVL3 (ENSOCUG00000016071) #36	PITX3 (ENSOCUG00000016065) #37	GBF1 (ENSOCUG00000005714)	NFKB2 (ENSOCUG00000005735)
Pika	MODERN SPECIES	604							SLF2 (ENSOPRG00000007048) #12	ENSOPRG00000007068 #13	MRPL43 (ENSOPRG00000007093) #14	TWNK (ENSOPRG00000007100) #15	LZTS2 (ENSOPRG00000007108) #16	ENSOPRG00000007119 #17	KAZALD1 (ENSOPRG00000007134) #19	TLX1 (ENSOPRG00000007137) #20	LBX1 (ENSOPRG00000007142) #21	BTRC (ENSOPRG00000007146) #22	POLL (ENSOPRG00000007162) #23	DPCD (ENSOPRG00000007167) #24	ENSOPRG00000007176 #25
Tree shrew	MODERN SPECIES	3389																BTRC (ENSTBEG00000001368) #22	POLL (ENSTBEG00000002691) #23	OGA (ENSTBEG00000003188) #28	ARMH3 (ENSTBEG00000004022) #30	HPS6 (ENSTBEG00000006230) #31	LDB1 (ENSTBEG00000006924) #32	PPRC1 (ENSTBEG00000008148) #33	NOLC1 (ENSTBEG00000008884) #35