Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000169317	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00990000203892	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a.p #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #35	ENSGT00940000161801.d #36	ENSGT00940000156925 #37
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000169317	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00990000203892	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a.p #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #35	ENSGT00940000161801.d #36	ENSGT00940000156925 #37
Mouse	MODERN SPECIES	10	Sec31b (ENSMUSG00000051984) #7	Gm20538 (ENSMUSG00000091471) #8	Ndufb8 (ENSMUSG00000025204) #9	Hif1an (ENSMUSG00000036450) #10	Pax2 (ENSMUSG00000004231) #11	Slf2 (ENSMUSG00000036097) #12	Sema4g (ENSMUSG00000025207) #13	Mrpl43 (ENSMUSG00000025208) #14	Twnk (ENSMUSG00000025209) #15	Lzts2 (ENSMUSG00000035342) #16	Pdzd7 (ENSMUSG00000074818) #17	Sfxn3 (ENSMUSG00000025212) #18	Kazald1 (ENSMUSG00000025213) #19	Tlx1 (ENSMUSG00000025215) #20	Lbx1 (ENSMUSG00000025216) #21	Btrc (ENSMUSG00000025217) #22	Poll (ENSMUSG00000025218) #23	Dpcd (ENSMUSG00000041035) #24	Fbxw4 (ENSMUSG00000040913) #25	Fgf8 (ENSMUSG00000025219) #26	Npm3 (ENSMUSG00000056209) #27	Oga (ENSMUSG00000025220) #28	Kcnip2 (ENSMUSG00000025221) #29	Armh3 (ENSMUSG00000039901) #30	Hps6 (ENSMUSG00000074811) #31	Ldb1 (ENSMUSG00000025223) #32	Pprc1 (ENSMUSG00000055491) #33	Nolc1 (ENSMUSG00000015176) #34	Elovl3 (ENSMUSG00000038754) #35	Pitx3 (ENSMUSG00000025229) #36	Gbf1 (ENSMUSG00000025224) #37
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000169317	ENSGT00390000000628 #9	ENSGT00940000157409 #10	ENSGT00940000157412.b #11	ENSGT00530000064017.a #12	ENSGT00940000157186 #13	ENSGT00390000015375 #14	ENSGT00390000004495 #15	ENSGT00940000154078.a.a #16	ENSGT00990000203892	ENSGT00950000183002.C #17	ENSGT01030000234641.b.a.b.a.a.p #18	ENSGT00530000063555.B #19	ENSGT00940000158698 #20	ENSGT00940000161756 #21	ENSGT00940000159672 #22	ENSGT00940000158515 #23	ENSGT00390000014031 #24	ENSGT00390000005029 #25	ENSGT00940000159518 #26	ENSGT00940000158796 #27	ENSGT00390000007726.a.a #28	ENSGT00940000157798 #29	ENSGT00390000002554 #30	ENSGT00390000001546 #31	ENSGT00390000005639.a.b #32	ENSGT00950000183137.a #33	ENSGT00730000111092.b #34	ENSGT01050000244965.a #35	ENSGT00940000161801.d #36	ENSGT00940000156925 #37
spretus	MODERN SPECIES	10	Sec31b (MGP_SPRETEiJ_G0023921) #7	MGP_SPRETEiJ_G0023922	Ndufb8 (MGP_SPRETEiJ_G0023923) #9	Hif1an (MGP_SPRETEiJ_G0023924) #10	Pax2 (MGP_SPRETEiJ_G0023925) #11	Slf2 (MGP_SPRETEiJ_G0023926) #12	Sema4g (MGP_SPRETEiJ_G0023927) #13	Mrpl43 (MGP_SPRETEiJ_G0023928) #14	Twnk (MGP_SPRETEiJ_G0023929) #15	Lzts2 (MGP_SPRETEiJ_G0023930) #16	Pdzd7 (MGP_SPRETEiJ_G0023931) #17	Sfxn3 (MGP_SPRETEiJ_G0023932) #18	Kazald1 (MGP_SPRETEiJ_G0023933) #19	Tlx1 (MGP_SPRETEiJ_G0023934) #20	Lbx1 (MGP_SPRETEiJ_G0023935) #21	Btrc (MGP_SPRETEiJ_G0023936) #22	Poll (MGP_SPRETEiJ_G0023937) #23	Dpcd (MGP_SPRETEiJ_G0023938) #24	MGP_SPRETEiJ_G0023939 #25	Fgf8 (MGP_SPRETEiJ_G0023940) #26	Npm3 (MGP_SPRETEiJ_G0023941) #27	Oga (MGP_SPRETEiJ_G0023942) #28	Kcnip2 (MGP_SPRETEiJ_G0023943) #29	Armh3 (MGP_SPRETEiJ_G0023944) #30	Hps6 (MGP_SPRETEiJ_G0023945) #31	Ldb1 (MGP_SPRETEiJ_G0023946) #32	Pprc1 (MGP_SPRETEiJ_G0023947) #33	Nolc1 (MGP_SPRETEiJ_G0023948) #34	Elovl3 (MGP_SPRETEiJ_G0023949) #35	Pitx3 (MGP_SPRETEiJ_G0023950) #36	Gbf1 (MGP_SPRETEiJ_G0023951) #37
Steppe mouse	MODERN SPECIES	3317	Sec31b (ENSMSIG00000013336) #7	Ndufb8 (ENSMSIG00000013308) #9	Hif1an (ENSMSIG00000013295) #10	Pax2 (ENSMSIG00000013194) #11	Slf2 (ENSMSIG00000013125) #12	Sema4g (ENSMSIG00000013048) #13	Mrpl43 (ENSMSIG00000013030) #14	Twnk (ENSMSIG00000013010) #15	Lzts2 (ENSMSIG00000012984) #16	ENSMSIG00000012980	Pdzd7 (ENSMSIG00000012912) #17	Sfxn3 (ENSMSIG00000012828) #18	Kazald1 (ENSMSIG00000012802) #19	Tlx1 (ENSMSIG00000012781) #20	Lbx1 (ENSMSIG00000012769) #21	Btrc (ENSMSIG00000012680) #22	Poll (ENSMSIG00000012645) #23	ENSMSIG00000012629 #24	ENSMSIG00000012591 #25	Fgf8 (ENSMSIG00000012521) #26	Npm3 (ENSMSIG00000012497) #27	Oga (ENSMSIG00000012429) #28	ENSMSIG00000011884 #29	Armh3 (ENSMSIG00000011813) #30	Hps6 (ENSMSIG00000011802) #31	Ldb1 (ENSMSIG00000011766) #32	Pprc1 (ENSMSIG00000011750) #33	Nolc1 (ENSMSIG00000011702) #34	Elovl3 (ENSMSIG00000011691) #35	Pitx3 (ENSMSIG00000011679) #36	Gbf1 (ENSMSIG00000011585) #37
Ryukyu mouse	MODERN SPECIES	10	Sec31b (MGP_CAROLIEiJ_G0023000) #7	MGP_CAROLIEiJ_G0023001	Ndufb8 (MGP_CAROLIEiJ_G0023002) #9	Hif1an (MGP_CAROLIEiJ_G0023003) #10	Pax2 (MGP_CAROLIEiJ_G0023004) #11	Slf2 (MGP_CAROLIEiJ_G0023005) #12	Sema4g (MGP_CAROLIEiJ_G0023006) #13	Mrpl43 (MGP_CAROLIEiJ_G0023007) #14	Twnk (MGP_CAROLIEiJ_G0023008) #15	Lzts2 (MGP_CAROLIEiJ_G0023009) #16	Pdzd7 (MGP_CAROLIEiJ_G0023010) #17	Sfxn3 (MGP_CAROLIEiJ_G0023011) #18	Kazald1 (MGP_CAROLIEiJ_G0023012) #19	Tlx1 (MGP_CAROLIEiJ_G0023013) #20	Lbx1 (MGP_CAROLIEiJ_G0023014) #21	Btrc (MGP_CAROLIEiJ_G0023015) #22	Poll (MGP_CAROLIEiJ_G0023016) #23	Dpcd (MGP_CAROLIEiJ_G0023017) #24	Fbxw4 (MGP_CAROLIEiJ_G0023018) #25	Fgf8 (MGP_CAROLIEiJ_G0023019) #26	Npm3 (MGP_CAROLIEiJ_G0023020) #27	Oga (MGP_CAROLIEiJ_G0023021) #28	Kcnip2 (MGP_CAROLIEiJ_G0023022) #29	Armh3 (MGP_CAROLIEiJ_G0023023) #30	Hps6 (MGP_CAROLIEiJ_G0023024) #31	Ldb1 (MGP_CAROLIEiJ_G0023025) #32	Pprc1 (MGP_CAROLIEiJ_G0023026) #33	Nolc1 (MGP_CAROLIEiJ_G0023027) #34	Elovl3 (MGP_CAROLIEiJ_G0023028) #35	Pitx3 (MGP_CAROLIEiJ_G0023029) #36	Gbf1 (MGP_CAROLIEiJ_G0023030) #37