Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000018505.b #17	ENSGT00940000157376 #16	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000160505 #14	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000016736.b	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Glires	ANCESTRAL SPECIES		ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000018505.b #17	ENSGT00940000157376 #16	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000160505 #14	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000016736.b	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Rodentia	ANCESTRAL SPECIES		ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000018505.b #17	ENSGT00940000157376 #16	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000160505 #14	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000016736.b	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665
Rodentia_B	ANCESTRAL SPECIES					ENSGT00390000018505.b #17	ENSGT00940000157376 #16	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000160505 #14	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Myomorpha	ANCESTRAL SPECIES	48				ENSGT00390000018505.b #17	ENSGT00940000157376 #16	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000160505 #14	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Muroidea	ANCESTRAL SPECIES	9	ENSGT00950000183044.a.a.a.c	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00570000079239 #9	ENSGT00950000182834.B #10	ENSGT00940000153634.b #11	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000160505 #14	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000157376 #16	ENSGT00390000018505.b #17	ENSGT00390000013448.a.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00390000013448.a.a.j.b #8	ENSGT00570000079239 #9	ENSGT00950000182834.B #10	ENSGT00940000153634.b #11	ENSGT00950000182834.A.a.b.c #12	ENSGT01000000214622.a.a.a #13	ENSGT00940000160505 #14	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000157376 #16	ENSGT00390000018505.b #17	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Murinae	ANCESTRAL SPECIES	11	ENSGT00390000013448.a.a.j.b #8	ENSGT00570000079239 #9	ENSGT00950000182834.B #10	ENSGT00940000153634.b #11	ENSGT00950000182834.A.a.b.c #12	ENSGT01000000214622.a.a.a #13	ENSGT00940000160505 #14	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000157376 #16	ENSGT00390000018505.b #17	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Rat	MODERN SPECIES	4	LOC498300 (ENSRNOG00000050163) #7	RGD1564463 (ENSRNOG00000003601) #8	Nvl (ENSRNOG00000003629) #9	Cnih4 (ENSRNOG00000003717) #10	Wdr26 (ENSRNOG00000003723) #11	Cnih3 (ENSRNOG00000022724) #12	Ccdc121rt (ENSRNOG00000022717) #13	Dnah14 (ENSRNOG00000070092) #14	Lbr (ENSRNOG00000052574) #15	Enah (ENSRNOG00000031934) #16	Srp9 (ENSRNOG00000003211) #17	Degs1 (ENSRNOG00000003223) #18	Fbxo28 (ENSRNOG00000000066) #19	Tp53bp2 (ENSRNOG00000003237) #20	Capn2 (ENSRNOG00000034015) #21	Capn8 (ENSRNOG00000003468) #22	Ccdc185 (ENSRNOG00000022104) #23	Susd4 (ENSRNOG00000003562) #24	Tlr5 (ENSRNOG00000022067) #25	Disp1 (ENSRNOG00000003635) #26	Brox (ENSRNOG00000052963) #27	Aida (ENSRNOG00000058805) #28	Mia3 (ENSRNOG00000059202) #29	Taf1a (ENSRNOG00000061139) #30	Hhipl2 (ENSRNOG00000056400) #31	LOC100912365 (ENSRNOG00000004066) #32	Dusp10 (ENSRNOG00000004003) #33	Hlx (ENSRNOG00000002309) #34	Mtarc1 (ENSRNOG00000037850) #35	RGD1310587 (ENSRNOG00000002322) #36	Mark1 (ENSRNOG00000002339) #37
Mus	ANCESTRAL SPECIES	5	ENSGT00390000013448.a.a.j.b #8	ENSGT00570000079239 #9	ENSGT00950000182834.B #10	ENSGT00940000153634.b #11	ENSGT00950000182834.A.a.b.c #12	ENSGT01000000214622.a.a.a #13	ENSGT00940000160505 #14	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000157376 #16	ENSGT00390000018505.b #17	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000013448.a.a.j.b #8	ENSGT00570000079239 #9	ENSGT00950000182834.B #10	ENSGT00940000153634.b #11	ENSGT00950000182834.A.a.b.c #12	ENSGT01000000214622.a.a.a #13	ENSGT00940000160505 #14	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000157376 #16	ENSGT00390000018505.b #17	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00940000157671 #33	ENSGT00520000058292 #32	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000013448.a.a.j.b #8	ENSGT00570000079239 #9	ENSGT00950000182834.B #10	ENSGT00940000153634.b #11	ENSGT00950000182834.A.a.b.c #12	ENSGT01000000214622.a.a.a #13	ENSGT00940000160505 #14	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000157376 #16	ENSGT00390000018505.b #17	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00940000157671 #33	ENSGT00520000058292 #32	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Mouse	MODERN SPECIES		9130409I23Rik (ENSMUSG00000038768) #7	Nvl (ENSMUSG00000026516) #9	Cnih4 (ENSMUSG00000062169) #10	Wdr26 (ENSMUSG00000038733) #11	Cnih3 (ENSMUSG00000026514) #12	Ccdc121rt1 (ENSMUSG00000050625) #13	Dnah14 (ENSMUSG00000047369) #14	Lbr (ENSMUSG00000004880) #15	Enah (ENSMUSG00000022995) #16	Srp9 (ENSMUSG00000026511) #17	Vmn1r1 (ENSMUSG00000091013)	Degs1 (ENSMUSG00000038633) #18	Fbxo28 (ENSMUSG00000047539) #19	Trp53bp2 (ENSMUSG00000026510) #20	Capn2 (ENSMUSG00000026509) #21	Capn8 (ENSMUSG00000038599) #22	Ccdc185 (ENSMUSG00000043429) #23	Susd4 (ENSMUSG00000038576) #24	Tlr5 (ENSMUSG00000079164) #25	Disp1 (ENSMUSG00000030768) #26	Brox (ENSMUSG00000046836) #27	Aida (ENSMUSG00000042901) #28	Mia3 (ENSMUSG00000056050) #29	Taf1a (ENSMUSG00000072258) #30	Hhipl2 (ENSMUSG00000053461) #31	Dusp10 (ENSMUSG00000039384) #33	1700056E22Rik (ENSMUSG00000044854) #32	Hlx (ENSMUSG00000039377) #34	Mtarc1 (ENSMUSG00000026621) #35	Mtarc2 (ENSMUSG00000073481)	C130074G19Rik (ENSMUSG00000039349) #36
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000013448.a.a.j.b #8	ENSGT00570000079239 #9	ENSGT00950000182834.B #10	ENSGT00940000153634.b #11	ENSGT00950000182834.A.a.b.c #12	ENSGT01000000214622.a.a.a #13	ENSGT00940000160505 #14	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000157376 #16	ENSGT00390000018505.b #17	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
spretus	MODERN SPECIES		9130409I23Rik (MGP_SPRETEiJ_G0015788) #7	Nvl (MGP_SPRETEiJ_G0015789) #9	Cnih4 (MGP_SPRETEiJ_G0015790) #10	Wdr26 (MGP_SPRETEiJ_G0015791) #11	Cnih3 (MGP_SPRETEiJ_G0015792) #12	MGP_SPRETEiJ_G0015793 #13	MGP_SPRETEiJ_G0015794 #14	Lbr (MGP_SPRETEiJ_G0015795) #15	Enah (MGP_SPRETEiJ_G0015796) #16	Srp9 (MGP_SPRETEiJ_G0015797) #17	Vmn1r1 (MGP_SPRETEiJ_G0015798)	Degs1 (MGP_SPRETEiJ_G0015799) #18	Fbxo28 (MGP_SPRETEiJ_G0015800) #19	Trp53bp2 (MGP_SPRETEiJ_G0015801) #20	Capn2 (MGP_SPRETEiJ_G0015802) #21	Capn8 (MGP_SPRETEiJ_G0015803) #22	Ccdc185 (MGP_SPRETEiJ_G0015804) #23	Susd4 (MGP_SPRETEiJ_G0015805) #24	Tlr5 (MGP_SPRETEiJ_G0015806) #25	Disp1 (MGP_SPRETEiJ_G0015807) #26	MGP_SPRETEiJ_G0015808 #27	Aida (MGP_SPRETEiJ_G0015809) #28	MGP_SPRETEiJ_G0015810 #29	Taf1a (MGP_SPRETEiJ_G0015811) #30	Hhipl2 (MGP_SPRETEiJ_G0015812) #31	Dusp10 (MGP_SPRETEiJ_G0015813) #33	1700056E22Rik (MGP_SPRETEiJ_G0015814) #32	Hlx (MGP_SPRETEiJ_G0015815) #34	Mtarc1 (MGP_SPRETEiJ_G0015816) #35	Mtarc2 (MGP_SPRETEiJ_G0015817)	C130074G19Rik (MGP_SPRETEiJ_G0015818) #36
Steppe mouse	MODERN SPECIES	2768											Araf (ENSMSIG00000016384)	Degs1 (ENSMSIG00000016411) #18	Fbxo28 (ENSMSIG00000016423) #19	Trp53bp2 (ENSMSIG00000016453) #20	Capn2 (ENSMSIG00000016556) #21	Capn8 (ENSMSIG00000016604) #22	Ccdc185 (ENSMSIG00000016670) #23	Susd4 (ENSMSIG00000016677) #24	Tlr5 (ENSMSIG00000016692) #25	Disp1 (ENSMSIG00000016706) #26	ENSMSIG00000016829	Brox (ENSMSIG00000016859) #27	Aida (ENSMSIG00000016931) #28	Mia3 (ENSMSIG00000016990) #29
Ryukyu mouse	MODERN SPECIES		Ephx1 (MGP_CAROLIEiJ_G0014988)	Nvl (MGP_CAROLIEiJ_G0014989) #9	Cnih4 (MGP_CAROLIEiJ_G0014990) #10	MGP_CAROLIEiJ_G0014991 #11	Cnih3 (MGP_CAROLIEiJ_G0014992) #12	Ccdc121rt1 (MGP_CAROLIEiJ_G0014993) #13	MGP_CAROLIEiJ_G0014994 #14	Lbr (MGP_CAROLIEiJ_G0014995) #15	Enah (MGP_CAROLIEiJ_G0014996) #16	Srp9 (MGP_CAROLIEiJ_G0014997) #17	Vmn1r1 (MGP_CAROLIEiJ_G0014998)	Degs1 (MGP_CAROLIEiJ_G0014999) #18	Fbxo28 (MGP_CAROLIEiJ_G0015000) #19	Trp53bp2 (MGP_CAROLIEiJ_G0015001) #20	MGP_CAROLIEiJ_G0015002 #21	Capn8 (MGP_CAROLIEiJ_G0015003) #22	Ccdc185 (MGP_CAROLIEiJ_G0015004) #23	Susd4 (MGP_CAROLIEiJ_G0015005) #24	Tlr5 (MGP_CAROLIEiJ_G0015006) #25	Disp1 (MGP_CAROLIEiJ_G0015007) #26	MGP_CAROLIEiJ_G0015008 #27	Aida (MGP_CAROLIEiJ_G0015009) #28	MGP_CAROLIEiJ_G0015010 ##29	MGP_CAROLIEiJ_G0015011 #30	Hhipl2 (MGP_CAROLIEiJ_G0015012) #31	Dusp10 (MGP_CAROLIEiJ_G0015013) #33	1700056E22Rik (MGP_CAROLIEiJ_G0015014) #32	Hlx (MGP_CAROLIEiJ_G0015015) #34	Mtarc1 (MGP_CAROLIEiJ_G0015016) #35	MGP_CAROLIEiJ_G0015017	C130074G19Rik (MGP_CAROLIEiJ_G0015018) #36
Shrew mouse	MODERN SPECIES	18	9130409I23Rik (MGP_PahariEiJ_G0028220) #7	Nvl (MGP_PahariEiJ_G0028221) #9	Cnih4 (MGP_PahariEiJ_G0028222) #10	Wdr26 (MGP_PahariEiJ_G0028223) #11	Cnih3 (MGP_PahariEiJ_G0028224) #12	Ccdc121rt1 (MGP_PahariEiJ_G0028225) #13	MGP_PahariEiJ_G0028226 #14	Lbr (MGP_PahariEiJ_G0028227) #15	Enah (MGP_PahariEiJ_G0028228) #16	Srp9 (MGP_PahariEiJ_G0028229) #17	Vmn1r1 (MGP_PahariEiJ_G0028230)	Degs1 (MGP_PahariEiJ_G0028231) #18	Fbxo28 (MGP_PahariEiJ_G0028232) #19	Trp53bp2 (MGP_PahariEiJ_G0028233) #20	Capn2 (MGP_PahariEiJ_G0028234) #21	Capn8 (MGP_PahariEiJ_G0028235) #22	Ccdc185 (MGP_PahariEiJ_G0028236) #23	Susd4 (MGP_PahariEiJ_G0028237) #24	Tlr5 (MGP_PahariEiJ_G0028238) #25	Disp1 (MGP_PahariEiJ_G0028239) #26	MGP_PahariEiJ_G0028240 #27	Aida (MGP_PahariEiJ_G0028241) #28	MGP_PahariEiJ_G0028242 #29	MGP_PahariEiJ_G0028243 #30	Hhipl2 (MGP_PahariEiJ_G0028244) #31	Dusp10 (MGP_PahariEiJ_G0028245) #33	1700056E22Rik (MGP_PahariEiJ_G0028246) #32	Hlx (MGP_PahariEiJ_G0028247) #34	Mtarc1 (MGP_PahariEiJ_G0028248) #35	Mtarc2 (MGP_PahariEiJ_G0028249)	C130074G19Rik (MGP_PahariEiJ_G0028250) #36
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00390000013448.a.a.j.b #8	ENSGT00570000079239 #9	ENSGT00950000182834.B #10	ENSGT00940000153634.b #11	ENSGT00950000182834.A.a.b.c #12	ENSGT01000000214622.a.a.a #13	ENSGT00940000160505 #14	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000157376 #16	ENSGT00390000018505.b #17	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000013448.a.a.j.b #8	ENSGT00570000079239 #9	ENSGT00950000182834.B #10	ENSGT00940000153634.b #11	ENSGT00950000182834.A.a.b.c #12	ENSGT01000000214622.a.a.a #13	ENSGT00940000160505 #14	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000157376 #16	ENSGT00390000018505.b #17	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970.u #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001016864 #8	Nvl (ENSCGRG00001007917) #9	Cnih4 (ENSCGRG00001000385) #10	Wdr26 (ENSCGRG00001018374) #11	Cnih3 (ENSCGRG00001018492) #12	Ccdc121rt1 (ENSCGRG00001005549) #13	ENSCGRG00001009826 #14	Lbr (ENSCGRG00001022299) #15	Enah (ENSCGRG00001013627) #16	Srp9 (ENSCGRG00001008910) #17	Vmn1r1 (ENSCGRG00001010250)	Degs1 (ENSCGRG00001002610) #18	ENSCGRG00001024842 #19	Trp53bp2 (ENSCGRG00001016347) #20	Capn2 (ENSCGRG00001024014) #21	Capn8 (ENSCGRG00001010502) #22	Ccdc185 (ENSCGRG00001009424) #23	Susd4 (ENSCGRG00001017083) #24	Tlr5 (ENSCGRG00001021852) #25	Disp1 (ENSCGRG00001020417) #26	Brox (ENSCGRG00001024002) #27	Aida (ENSCGRG00001022468) #28	ENSCGRG00001023192 #29	Taf1a (ENSCGRG00001018774) #30	Hhipl2 (ENSCGRG00001014102) #31	ENSCGRG00001010939	1700056E22Rik (ENSCGRG00001011197) #32	Dusp10 (ENSCGRG00001018543) #33	Hlx (ENSCGRG00001023360) #34	Mtarc1 (ENSCGRG00001018406) #35	Mtarc2 (ENSCGRG00001016855)
Golden Hamster	MODERN SPECIES	697	ENSMAUG00000007599	ENSMAUG00000003804 #7	Nvl (ENSMAUG00000015157) #9	Cnih4 (ENSMAUG00000012691) #10	Wdr26 (ENSMAUG00000014280) #11	Cnih3 (ENSMAUG00000012379) #12	Ccdc121rt1 (ENSMAUG00000010926) #13	ENSMAUG00000014176 #14	Lbr (ENSMAUG00000012993) #15	Enah (ENSMAUG00000017836) #16	Srp9 (ENSMAUG00000017552) #17	Degs1 (ENSMAUG00000015951) #18	Fbxo28 (ENSMAUG00000017511) #19	Trp53bp2 (ENSMAUG00000016823) #20	Capn2 (ENSMAUG00000012201) #21	Capn8 (ENSMAUG00000013583) #22	Susd4 (ENSMAUG00000016992) #24	Tlr5 (ENSMAUG00000015989) #25	Disp1 (ENSMAUG00000011793) #26	Brox (ENSMAUG00000010699) #27	ENSMAUG00000008373 #28
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00390000013448.a.a.j.b #8	ENSGT00570000079239 #9	ENSGT00950000182834.B #10	ENSGT00940000153634.b #11	ENSGT00950000182834.A.a.b.c #12	ENSGT01000000214622.a.a.a #13	ENSGT00940000160505 #14	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000157376 #16	ENSGT00390000018505.b #17	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Prairie vole	MODERN SPECIES	14	9130409I23Rik (ENSMOCG00000021672) #7	Nvl (ENSMOCG00000017466) #9	Cnih4 (ENSMOCG00000014531) #10	Wdr26 (ENSMOCG00000018920) #11	Cnih3 (ENSMOCG00000011071) #12	ENSMOCG00000011930 #14	ENSMOCG00000009557	Enah (ENSMOCG00000016095) #16	ENSMOCG00000004862	ENSMOCG00000019142	Srp9 (ENSMOCG00000012590) #17	Degs1 (ENSMOCG00000021480) #18	Fbxo28 (ENSMOCG00000006258) #19	Trp53bp2 (ENSMOCG00000023035) #20	Capn2 (ENSMOCG00000005406) #21	Capn8 (ENSMOCG00000007896) #22	Susd4 (ENSMOCG00000021482) #24	Tlr5 (ENSMOCG00000007149) #25	Disp1 (ENSMOCG00000003503) #26	Brox (ENSMOCG00000021404) #27	Aida (ENSMOCG00000014960) #28	Cr2 (ENSMOCG00000013074)	ENSMOCG00000018969	Cd46 (ENSMOCG00000016616)	Cd34 (ENSMOCG00000020322)	Plxna2 (ENSMOCG00000007230)	Camk1g (ENSMOCG00000018302)	Lamb3 (ENSMOCG00000016300)	G0s2 (ENSMOCG00000002733)	Hsd11b1 (ENSMOCG00000002294)	Traf3ip3 (ENSMOCG00000010371)
Northern American deer mouse	MODERN SPECIES	2	Cnih4 (ENSPEMG00000012374) #10	Wdr26 (ENSPEMG00000010249) #11	Cnih3 (ENSPEMG00000008307) #12	Ccdc121rt1 (ENSPEMG00000029360) #13	Dnah14 (ENSPEMG00000025670) #14	Lbr (ENSPEMG00000022439) #15	Enah (ENSPEMG00000022874) #16	Srp9 (ENSPEMG00000022774) #17	Vmn1r1 (ENSPEMG00000030686)	Degs1 (ENSPEMG00000024291) #18	ENSPEMG00000030554	ENSPEMG00000024922 #19	Trp53bp2 (ENSPEMG00000022254) #20	Capn2 (ENSPEMG00000022586) #21	ENSPEMG00000031335	Capn8 (ENSPEMG00000022069) #22	Ccdc185 (ENSPEMG00000027935) #23	Susd4 (ENSPEMG00000022185) #24	Tlr5 (ENSPEMG00000022878) #25	Disp1 (ENSPEMG00000017075) #26	Brox (ENSPEMG00000013294) #27	Aida (ENSPEMG00000003676) #28	ENSPEMG00000022967 #29	ENSPEMG00000026967 #29	Taf1a (ENSPEMG00000023637) #30	Hhipl2 (ENSPEMG00000021653) #31	1700056E22Rik (ENSPEMG00000027598) #32	Dusp10 (ENSPEMG00000022574) #33	Hlx (ENSPEMG00000021851) #34	Mtarc1 (ENSPEMG00000022917) #35	Mtarc2 (ENSPEMG00000008290)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1848				Nvl (ENSNGAG00000016481) #9	Cnih4 (ENSNGAG00000018004) #10	Wdr26 (ENSNGAG00000019715) #11	Cnih3 (ENSNGAG00000016605) #12	ENSNGAG00000000274	Lbr (ENSNGAG00000003588) #15	Enah (ENSNGAG00000006232) #16	Srp9 (ENSNGAG00000019936) #17	ENSNGAG00000020306 #18	Fbxo28 (ENSNGAG00000006798) #19	Trp53bp2 (ENSNGAG00000009097) #20	Capn2 (ENSNGAG00000015328) #21	Capn8 (ENSNGAG00000018681) #22	Susd4 (ENSNGAG00000012710) #24	Tlr5 (ENSNGAG00000003846) #25	Disp1 (ENSNGAG00000006522) #26	Brox (ENSNGAG00000020768) #27	Aida (ENSNGAG00000000252) #28	ENSNGAG00000009217 #29	Taf1a (ENSNGAG00000003855) #30	Hhipl2 (ENSNGAG00000001214) #31	ENSNGAG00000016789	Dusp10 (ENSNGAG00000010906) #33	Hlx (ENSNGAG00000011803) #34	Mtarc1 (ENSNGAG00000014845) #35	Mtarc2 (ENSNGAG00000017811)	C130074G19Rik (ENSNGAG00000008919) #36	Mark1 (ENSNGAG00000011193) #37
Lesser Egyptian jerboa	MODERN SPECIES	51	ENSJJAG00000022098	ENSJJAG00000000689 #18	Nvl (ENSJJAG00000003012) #9	ENSJJAG00000020517 #10	Wdr26 (ENSJJAG00000019959) #11	Cnih3 (ENSJJAG00000023601) #12	Dnah14 (ENSJJAG00000023244) #14	ENSJJAG00000007609	ENSJJAG00000023116	Enah (ENSJJAG00000023846) #16	Srp9 (ENSJJAG00000016583) #17	ENSJJAG00000015313 #18	Fbxo28 (ENSJJAG00000010586) #19	Trp53bp2 (ENSJJAG00000023990) #20	Capn2 (ENSJJAG00000012528) #21	Capn8 (ENSJJAG00000017277) #22	ENSJJAG00000000764	Ccdc185 (ENSJJAG00000021530) #23	Susd4 (ENSJJAG00000017970) #24	Disp1 (ENSJJAG00000015868) #26	Brox (ENSJJAG00000007298) #27	Aida (ENSJJAG00000023815) #28	ENSJJAG00000022254 #29	Taf1a (ENSJJAG00000006299) #30	Ptchd3 (ENSJJAG00000024292)	ENSJJAG00000012961	Cr1l (ENSJJAG00000022966)	ENSJJAG00000010379	ENSJJAG00000013299	Cd34 (ENSJJAG00000020811)	Plxna2 (ENSJJAG00000017523)
Kangaroo rat	MODERN SPECIES	345	Bola1 (ENSDORG00000016364)	H2ac21 (ENSDORG00000024245)	H2ac20 (ENSDORG00000024205)	ENSDORG00000028335	ENSDORG00000028881	ENSDORG00000025650	ENSDORG00000028205	ENSDORG00000029688	H2bc18 (ENSDORG00000028945)	Fcgr1 (ENSDORG00000016350)	ENSDORG00000004350 #18	ENSDORG00000024805 #19	ENSDORG00000024350	Trp53bp2 (ENSDORG00000013922) #20	Capn2 (ENSDORG00000013919) #21	Capn8 (ENSDORG00000012143) #22	ENSDORG00000012704 #23	Susd4 (ENSDORG00000012702) #24	Tlr5 (ENSDORG00000027996) #25	Disp1 (ENSDORG00000001710) #26	Brox (ENSDORG00000024726) #27	Aida (ENSDORG00000000982) #28	ENSDORG00000000970 #29	Taf1a (ENSDORG00000016042) #30	Hhipl2 (ENSDORG00000029474) #31	ENSDORG00000027102	ENSDORG00000003656	Dusp10 (ENSDORG00000010908) #33	Hlx (ENSDORG00000001941) #34	Mtarc2 (ENSDORG00000014211)	C130074G19Rik (ENSDORG00000028858) #36
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000018505.b #17	ENSGT00940000157376 #16	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000160505 #14	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000016736.b	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000018505.b #17	ENSGT00940000157376 #16	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000160505 #14	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000016736.b	ENSGT00390000006681.c #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665
Marmotini	ANCESTRAL SPECIES	21	ENSGT00390000018505.b #17	ENSGT00940000157376 #16	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000160505 #14	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a.n #18	ENSGT00390000013448.a.a.m.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000170327	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681.c #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #32	ENSGT00940000157671 #33	ENSGT00950000182895.a.b.j.n.b	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665
Marmotini_b	ANCESTRAL SPECIES	84	ENSGT00390000002210.d	ENSGT00390000018505.b #17	ENSGT00940000157376 #16	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00940000160505 #14	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a.n #18	ENSGT00390000013448.a.a.m.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000170327	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681.c #27
Arctic ground squirrel	MODERN SPECIES	351					CNIH3 (ENSUPAG00010010721) #12	WDR26 (ENSUPAG00010010739) #11	ENSUPAG00010010774 #10	NVL (ENSUPAG00010010793) #9	DEGS1 (ENSUPAG00010010835) #18	ENSUPAG00010010845	ENSUPAG00010010846	FBXO28 (ENSUPAG00010010849) #19	TP53BP2 (ENSUPAG00010010858) #20	CAPN2 (ENSUPAG00010010876) #21	ENSUPAG00010010888	CAPN8 (ENSUPAG00010010898) #22	CCDC185 (ENSUPAG00010010940) #23	SUSD4 (ENSUPAG00010010944) #24	TLR5 (ENSUPAG00010010950) #25	DISP1 (ENSUPAG00010010957) #26	BROX (ENSUPAG00010010975) #27
Squirrel	MODERN SPECIES	126	EPHX1 (ENSSTOG00000026627)	SRP9 (ENSSTOG00000026827) #17	ENAH (ENSSTOG00000028215) #16	LBR (ENSSTOG00000005936) #15	DNAH14 (ENSSTOG00000021317) #14	CNIH3 (ENSSTOG00000028458) #12	WDR26 (ENSSTOG00000021796) #11	CNIH4 (ENSSTOG00000027396) #10	NVL (ENSSTOG00000014728) #9	ENSSTOG00000031649 #18	ENSSTOG00000021334	ENSSTOG00000025481 #18	FBXO28 (ENSSTOG00000009419) #19	TP53BP2 (ENSSTOG00000009398) #20	CAPN2 (ENSSTOG00000009370) #21	CAPN8 (ENSSTOG00000010479) #22	CCDC185 (ENSSTOG00000020619) #23	SUSD4 (ENSSTOG00000010457) #24	TLR5 (ENSSTOG00000022418) #25	DISP1 (ENSSTOG00000020721) #26	BROX (ENSSTOG00000003082) #27
Alpin marmot	MODERN SPECIES	12	LBR (ENSMMMG00000024148) #15	ENSMMMG00000024149 #14	ENSMMMG00000024150 #14	ENSMMMG00000024151	CNIH3 (ENSMMMG00000024152) #12	WDR26 (ENSMMMG00000024153) #11	CNIH4 (ENSMMMG00000024154) #10	NVL (ENSMMMG00000024155) #9	ENSMMMG00000024156	ENSMMMG00000024157	DEGS1 (ENSMMMG00000024159) #18	FBXO28 (ENSMMMG00000024160) #19	TP53BP2 (ENSMMMG00000024161) #20	CAPN2 (ENSMMMG00000024162) #21	ENSMMMG00000024163	CAPN8 (ENSMMMG00000024165) #22	CCDC185 (ENSMMMG00000024166) #23	SUSD4 (ENSMMMG00000024167) #24	TLR5 (ENSMMMG00000024168) #25	DISP1 (ENSMMMG00000024169) #26	ENSMMMG00000024170	ENSMMMG00000024171	ENSMMMG00000024172 #27	ENSMMMG00000024173 #28	MIA3 (ENSMMMG00000024174) #29	TAF1A (ENSMMMG00000024175) #30	ENSMMMG00000024176 #32	DUSP10 (ENSMMMG00000024177) #33	ENSMMMG00000024179	ENSMMMG00000024180	HLX (ENSMMMG00000024182) #34
Eurasian red squirrel	MODERN SPECIES	3	ENSSVLG00005011796	LBR (ENSSVLG00005012135) #15	ENSSVLG00005012197 #14	ENSSVLG00005012320 #14	ENSSVLG00005012453	CNIH3 (ENSSVLG00005012576) #12	WDR26 (ENSSVLG00005012677) #11	CNIH4 (ENSSVLG00005013000) #10	NVL (ENSSVLG00005014283) #9	DEGS1 (ENSSVLG00005015737) #18	ENSSVLG00005015789	ENSSVLG00005015831	FBXO28 (ENSSVLG00005015889) #19	TP53BP2 (ENSSVLG00005015950) #20	CAPN2 (ENSSVLG00005016131) #21	CAPN8 (ENSSVLG00005016359) #22	CCDC185 (ENSSVLG00005016646) #23	SUSD4 (ENSSVLG00005016664) #24	ENSSVLG00005016801	TLR5 (ENSSVLG00005016843) #25	DISP1 (ENSSVLG00005016863) #26	FAM177B (ENSSVLG00005016899)	ENSSVLG00005017010 #27	ENSSVLG00005017467 #28	ENSSVLG00005017706	ENSSVLG00005017761	ENSSVLG00005017780	MIA3 (ENSSVLG00005017865) #29	ENSSVLG00005018144	TAF1A (ENSSVLG00005018206) #30	HHIPL2 (ENSSVLG00005018294) #31
Hystricomorpha	ANCESTRAL SPECIES	49			ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000018505.b #17	ENSGT00940000157376 #16	ENSGT00390000000417.a.a.b.a.b #15	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00940000157560.e #37	ENSGT00390000005794	ENSGT00550000074910
Hystricomorpha_a	ANCESTRAL SPECIES	13		ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000018505.b #17	ENSGT00940000157376 #16	ENSGT00940000165801	ENSGT00940000160505 #14	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00940000157560.e #37	ENSGT00390000005794	ENSGT00550000074910
Hystricomorpha_b	ANCESTRAL SPECIES	4				ENSGT00390000002210.d	ENSGT00390000018505.b #17	ENSGT00940000157376 #16	ENSGT00940000165801	ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00940000157560.e #37	ENSGT00390000005794	ENSGT00550000074910
Long-tailed chinchilla	MODERN SPECIES	227	EPHX1 (ENSCLAG00000001352)	ENSCLAG00000001368 #17	ENAH (ENSCLAG00000001466) #16	ENSCLAG00000001532	ENSCLAG00000001553	ENSCLAG00000002048	CNIH3 (ENSCLAG00000002062) #12	WDR26 (ENSCLAG00000002079) #11	CNIH4 (ENSCLAG00000002095) #10	NVL (ENSCLAG00000002134) #9	ENSCLAG00000017627	DEGS1 (ENSCLAG00000002172) #18	FBXO28 (ENSCLAG00000002181) #19	TP53BP2 (ENSCLAG00000002215) #20	CAPN2 (ENSCLAG00000002282) #21	ENSCLAG00000002333 #22	SUSD4 (ENSCLAG00000002377) #24	TLR5 (ENSCLAG00000017491) #25	DISP1 (ENSCLAG00000002480) #26	BROX (ENSCLAG00000002510) #27	AIDA (ENSCLAG00000002553) #28	MIA3 (ENSCLAG00000002599) #29	TAF1A (ENSCLAG00000002799) #30	HHIPL2 (ENSCLAG00000002876) #31	DUSP10 (ENSCLAG00000002918) #33	HLX (ENSCLAG00000002944) #34	MTARC1 (ENSCLAG00000002988) #35	MTARC2 (ENSCLAG00000003056)	MARK1 (ENSCLAG00000003109) #37	RAB3GAP2 (ENSCLAG00000003251)	IARS2 (ENSCLAG00000003537)
Degu	MODERN SPECIES	58	ENSODEG00000014810	ENSODEG00000016922	EPHX1 (ENSODEG00000014812)	ENSODEG00000015075 #17	ENAH (ENSODEG00000014853) #16	ENSODEG00000015198	CNIH3 (ENSODEG00000015526) #12	WDR26 (ENSODEG00000014639) #11	CNIH4 (ENSODEG00000014547) #10	NVL (ENSODEG00000015119) #9	DEGS1 (ENSODEG00000014645) #18	ENSODEG00000015588 #19	ENSODEG00000015647 #19	TP53BP2 (ENSODEG00000014627) #20	CAPN2 (ENSODEG00000014888) #21	ENSODEG00000015314 #22	SUSD4 (ENSODEG00000015602) #24	DISP1 (ENSODEG00000014608) #26	BROX (ENSODEG00000014324) #27	AIDA (ENSODEG00000014752) #28	TAF1A (ENSODEG00000014413) #30	HHIPL2 (ENSODEG00000014714) #31	DUSP10 (ENSODEG00000014856) #33	HLX (ENSODEG00000014661) #34	MTARC1 (ENSODEG00000014242) #35	MTARC2 (ENSODEG00000014768)	MARK1 (ENSODEG00000014668) #37	ENSODEG00000016536	RAB3GAP2 (ENSODEG00000015791)	IARS2 (ENSODEG00000014882)	BPNT1 (ENSODEG00000015018)
Guinea pig	MODERN SPECIES	13								CNIH3 (ENSCPOG00000027478) #12	WDR26 (ENSCPOG00000007318) #11	CNIH4 (ENSCPOG00000036624) #10	NVL (ENSCPOG00000037869) #9	DEGS1 (ENSCPOG00000008694) #18	FBXO28 (ENSCPOG00000031291) #19	TP53BP2 (ENSCPOG00000024636) #20	CAPN2 (ENSCPOG00000021723) #21	ENSCPOG00000024119 #22	ENSCPOG00000022737 #28	DISP1 (ENSCPOG00000031875) #26	BROX (ENSCPOG00000013599) #27	AIDA (ENSCPOG00000007889) #28	MIA3 (ENSCPOG00000007872) #29	TAF1A (ENSCPOG00000007867) #30	DUSP10 (ENSCPOG00000013232) #33	HLX (ENSCPOG00000024028) #34	MTARC1 (ENSCPOG00000036776) #35	MTARC2 (ENSCPOG00000027303)	MARK1 (ENSCPOG00000002730) #37	RAB3GAP2 (ENSCPOG00000008416)	IARS2 (ENSCPOG00000012942)	BPNT1 (ENSCPOG00000037184)	EPRS1 (ENSCPOG00000003586)
Lagomorpha	ANCESTRAL SPECIES	15								ENSGT00950000182834.A.a.b.c #12	ENSGT00940000153634.b #11	ENSGT00950000182834.B #10	ENSGT00570000079239 #9	ENSGT00390000013448.a.a #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000016736.b	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a #29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00940000157671 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665	ENSGT00390000004585 #36
Rabbit	MODERN SPECIES	7	ENSOCUG00000024644	ACBD3 (ENSOCUG00000014391)	MIXL1 (ENSOCUG00000000103)	ENSOCUG00000022544	LIN9 (ENSOCUG00000010028)	PARP1 (ENSOCUG00000017820)	CNIH3 (ENSOCUG00000007694) #12	WDR26 (ENSOCUG00000003294) #11	CNIH4 (ENSOCUG00000000520) #10	NVL (ENSOCUG00000005530) #9	ENSOCUG00000023942 #18	FBXO28 (ENSOCUG00000004012) #19	TP53BP2 (ENSOCUG00000004626) #20	CAPN2 (ENSOCUG00000004612) #21	ENSOCUG00000033605	CAPN8 (ENSOCUG00000008207) #22	CCDC185 (ENSOCUG00000014381) #23	SUSD4 (ENSOCUG00000006228) #24	DISP1 (ENSOCUG00000006408) #26	ENSOCUG00000021671	BROX (ENSOCUG00000016381) #27	AIDA (ENSOCUG00000017030) #28	MIA3 (ENSOCUG00000025154) #29	TAF1A (ENSOCUG00000000606) #30	HHIPL2 (ENSOCUG00000000603) #31	ENSOCUG00000000250	ENSOCUG00000032919	DUSP10 (ENSOCUG00000007533) #33	HLX (ENSOCUG00000006015) #34	MTARC1 (ENSOCUG00000013162) #35	C1orf115 (ENSOCUG00000026893) #36
Pika	MODERN SPECIES	4539																CAPN8 (ENSOPRG00000015491) #22
Tree shrew	MODERN SPECIES	5121																ENSTBEG00000002984 #22