Murinae	ANCESTRAL SPECIES	11	ENSGT00390000013448.a.a.j.b ##18	ENSGT00570000079239 #8	ENSGT00950000182834.B #9	ENSGT00940000153634.b #10	ENSGT00950000182834.A.a.b.c #11	ENSGT01000000214622.a.a.a #12	ENSGT00940000160505 #13	ENSGT00390000000417.a.a.b.a.b #14	ENSGT00940000157376 #15	ENSGT00390000018505.b #16	ENSGT01030000234553.b.b.d.c.b.a.b #17	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a ##29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #33	ENSGT00940000157671 #32	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665 #36	ENSGT00390000004585 #37
Mus	ANCESTRAL SPECIES	5	ENSGT00390000013448.a.a.j.b ##18	ENSGT00570000079239 #8	ENSGT00950000182834.B #9	ENSGT00940000153634.b #10	ENSGT00950000182834.A.a.b.c #11	ENSGT01000000214622.a.a.a #12	ENSGT00940000160505 #13	ENSGT00390000000417.a.a.b.a.b #14	ENSGT00940000157376 #15	ENSGT00390000018505.b #16	ENSGT01030000234553.b.b.d.c.b.a.b #17	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a ##29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #33	ENSGT00940000157671 #32	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665 #36	ENSGT00390000004585 #37
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000013448.a.a.j.b ##18	ENSGT00570000079239 #8	ENSGT00950000182834.B #9	ENSGT00940000153634.b #10	ENSGT00950000182834.A.a.b.c #11	ENSGT01000000214622.a.a.a #12	ENSGT00940000160505 #13	ENSGT00390000000417.a.a.b.a.b #14	ENSGT00940000157376 #15	ENSGT00390000018505.b #16	ENSGT01030000234553.b.b.d.c.b.a.b #17	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a ##29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00940000157671 #32	ENSGT00520000058292 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665 #36	ENSGT00390000004585 #37
Ryukyu mouse	MODERN SPECIES		Ephx1 (MGP_CAROLIEiJ_G0014988) #7	Nvl (MGP_CAROLIEiJ_G0014989) #8	Cnih4 (MGP_CAROLIEiJ_G0014990) #9	MGP_CAROLIEiJ_G0014991 #10	Cnih3 (MGP_CAROLIEiJ_G0014992) #11	Ccdc121rt1 (MGP_CAROLIEiJ_G0014993) #12	MGP_CAROLIEiJ_G0014994 #13	Lbr (MGP_CAROLIEiJ_G0014995) #14	Enah (MGP_CAROLIEiJ_G0014996) #15	Srp9 (MGP_CAROLIEiJ_G0014997) #16	Vmn1r1 (MGP_CAROLIEiJ_G0014998) #17	Degs1 (MGP_CAROLIEiJ_G0014999) #18	Fbxo28 (MGP_CAROLIEiJ_G0015000) #19	Trp53bp2 (MGP_CAROLIEiJ_G0015001) #20	MGP_CAROLIEiJ_G0015002 #21	Capn8 (MGP_CAROLIEiJ_G0015003) #22	Ccdc185 (MGP_CAROLIEiJ_G0015004) #23	Susd4 (MGP_CAROLIEiJ_G0015005) #24	Tlr5 (MGP_CAROLIEiJ_G0015006) #25	Disp1 (MGP_CAROLIEiJ_G0015007) #26	MGP_CAROLIEiJ_G0015008 #27	Aida (MGP_CAROLIEiJ_G0015009) #28	MGP_CAROLIEiJ_G0015010 #29	MGP_CAROLIEiJ_G0015011 #30	Hhipl2 (MGP_CAROLIEiJ_G0015012) #31	Dusp10 (MGP_CAROLIEiJ_G0015013) #32	1700056E22Rik (MGP_CAROLIEiJ_G0015014) #33	Hlx (MGP_CAROLIEiJ_G0015015) #34	Mtarc1 (MGP_CAROLIEiJ_G0015016) #35	MGP_CAROLIEiJ_G0015017 #36	C130074G19Rik (MGP_CAROLIEiJ_G0015018) #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000013448.a.a.j.b ##18	ENSGT00570000079239 #8	ENSGT00950000182834.B #9	ENSGT00940000153634.b #10	ENSGT00950000182834.A.a.b.c #11	ENSGT01000000214622.a.a.a #12	ENSGT00940000160505 #13	ENSGT00390000000417.a.a.b.a.b #14	ENSGT00940000157376 #15	ENSGT00390000018505.b #16	ENSGT01030000234553.b.b.d.c.b.a.b #17	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a ##29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00940000157671 #32	ENSGT00520000058292 #33	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665 #36	ENSGT00390000004585 #37
Mouse	MODERN SPECIES		9130409I23Rik (ENSMUSG00000038768) ##18	Nvl (ENSMUSG00000026516) #8	Cnih4 (ENSMUSG00000062169) #9	Wdr26 (ENSMUSG00000038733) #10	Cnih3 (ENSMUSG00000026514) #11	Ccdc121rt1 (ENSMUSG00000050625) #12	Dnah14 (ENSMUSG00000047369) #13	Lbr (ENSMUSG00000004880) #14	Enah (ENSMUSG00000022995) #15	Srp9 (ENSMUSG00000026511) #16	Vmn1r1 (ENSMUSG00000091013) #17	Degs1 (ENSMUSG00000038633) #18	Fbxo28 (ENSMUSG00000047539) #19	Trp53bp2 (ENSMUSG00000026510) #20	Capn2 (ENSMUSG00000026509) #21	Capn8 (ENSMUSG00000038599) #22	Ccdc185 (ENSMUSG00000043429) #23	Susd4 (ENSMUSG00000038576) #24	Tlr5 (ENSMUSG00000079164) #25	Disp1 (ENSMUSG00000030768) #26	Brox (ENSMUSG00000046836) #27	Aida (ENSMUSG00000042901) #28	Mia3 (ENSMUSG00000056050) ##29	Taf1a (ENSMUSG00000072258) #30	Hhipl2 (ENSMUSG00000053461) #31	Dusp10 (ENSMUSG00000039384) #32	1700056E22Rik (ENSMUSG00000044854) #33	Hlx (ENSMUSG00000039377) #34	Mtarc1 (ENSMUSG00000026621) #35	Mtarc2 (ENSMUSG00000073481) #36	C130074G19Rik (ENSMUSG00000039349) #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000013448.a.a.j.b ##18	ENSGT00570000079239 #8	ENSGT00950000182834.B #9	ENSGT00940000153634.b #10	ENSGT00950000182834.A.a.b.c #11	ENSGT01000000214622.a.a.a #12	ENSGT00940000160505 #13	ENSGT00390000000417.a.a.b.a.b #14	ENSGT00940000157376 #15	ENSGT00390000018505.b #16	ENSGT01030000234553.b.b.d.c.b.a.b #17	ENSGT00390000013448.a.a.i #18	ENSGT00390000002970 #19	ENSGT00940000153463.b #20	ENSGT00940000154784.D.a.b #21	ENSGT00940000160090 #22	ENSGT00740000115684 #23	ENSGT00940000160410 #24	ENSGT00940000162464 #25	ENSGT00940000157407 #26	ENSGT00390000006681 #27	ENSGT00390000016465 #28	ENSGT00950000182767.a.a ##29	ENSGT00390000011405 #30	ENSGT00940000161139 #31	ENSGT00520000058292 #33	ENSGT00940000157671 #32	ENSGT00950000183093.C #34	ENSGT00940000162410 #35	ENSGT00940000159665 #36	ENSGT00390000004585 #37
spretus	MODERN SPECIES		9130409I23Rik (MGP_SPRETEiJ_G0015788) ##18	Nvl (MGP_SPRETEiJ_G0015789) #8	Cnih4 (MGP_SPRETEiJ_G0015790) #9	Wdr26 (MGP_SPRETEiJ_G0015791) #10	Cnih3 (MGP_SPRETEiJ_G0015792) #11	MGP_SPRETEiJ_G0015793 #12	MGP_SPRETEiJ_G0015794 #13	Lbr (MGP_SPRETEiJ_G0015795) #14	Enah (MGP_SPRETEiJ_G0015796) #15	Srp9 (MGP_SPRETEiJ_G0015797) #16	Vmn1r1 (MGP_SPRETEiJ_G0015798) #17	Degs1 (MGP_SPRETEiJ_G0015799) #18	Fbxo28 (MGP_SPRETEiJ_G0015800) #19	Trp53bp2 (MGP_SPRETEiJ_G0015801) #20	Capn2 (MGP_SPRETEiJ_G0015802) #21	Capn8 (MGP_SPRETEiJ_G0015803) #22	Ccdc185 (MGP_SPRETEiJ_G0015804) #23	Susd4 (MGP_SPRETEiJ_G0015805) #24	Tlr5 (MGP_SPRETEiJ_G0015806) #25	Disp1 (MGP_SPRETEiJ_G0015807) #26	MGP_SPRETEiJ_G0015808 #27	Aida (MGP_SPRETEiJ_G0015809) #28	MGP_SPRETEiJ_G0015810 ##29	Taf1a (MGP_SPRETEiJ_G0015811) #30	Hhipl2 (MGP_SPRETEiJ_G0015812) #31	Dusp10 (MGP_SPRETEiJ_G0015813) #32	1700056E22Rik (MGP_SPRETEiJ_G0015814) #33	Hlx (MGP_SPRETEiJ_G0015815) #34	Mtarc1 (MGP_SPRETEiJ_G0015816) #35	Mtarc2 (MGP_SPRETEiJ_G0015817) #36	C130074G19Rik (MGP_SPRETEiJ_G0015818) #37
Steppe mouse	MODERN SPECIES	2768											Araf (ENSMSIG00000016384)	Degs1 (ENSMSIG00000016411) #18	Fbxo28 (ENSMSIG00000016423) #19	Trp53bp2 (ENSMSIG00000016453) #20	Capn2 (ENSMSIG00000016556) #21	Capn8 (ENSMSIG00000016604) #22	Ccdc185 (ENSMSIG00000016670) #23	Susd4 (ENSMSIG00000016677) #24	Tlr5 (ENSMSIG00000016692) #25	Disp1 (ENSMSIG00000016706) #26	ENSMSIG00000016829	Brox (ENSMSIG00000016859) #27	Aida (ENSMSIG00000016931) #28	Mia3 (ENSMSIG00000016990) ##29
Shrew mouse	MODERN SPECIES	18	9130409I23Rik (MGP_PahariEiJ_G0028220) ##18	Nvl (MGP_PahariEiJ_G0028221) #8	Cnih4 (MGP_PahariEiJ_G0028222) #9	Wdr26 (MGP_PahariEiJ_G0028223) #10	Cnih3 (MGP_PahariEiJ_G0028224) #11	Ccdc121rt1 (MGP_PahariEiJ_G0028225) #12	MGP_PahariEiJ_G0028226 #13	Lbr (MGP_PahariEiJ_G0028227) #14	Enah (MGP_PahariEiJ_G0028228) #15	Srp9 (MGP_PahariEiJ_G0028229) #16	Vmn1r1 (MGP_PahariEiJ_G0028230) #17	Degs1 (MGP_PahariEiJ_G0028231) #18	Fbxo28 (MGP_PahariEiJ_G0028232) #19	Trp53bp2 (MGP_PahariEiJ_G0028233) #20	Capn2 (MGP_PahariEiJ_G0028234) #21	Capn8 (MGP_PahariEiJ_G0028235) #22	Ccdc185 (MGP_PahariEiJ_G0028236) #23	Susd4 (MGP_PahariEiJ_G0028237) #24	Tlr5 (MGP_PahariEiJ_G0028238) #25	Disp1 (MGP_PahariEiJ_G0028239) #26	MGP_PahariEiJ_G0028240 #27	Aida (MGP_PahariEiJ_G0028241) #28	MGP_PahariEiJ_G0028242 ##29	MGP_PahariEiJ_G0028243 #30	Hhipl2 (MGP_PahariEiJ_G0028244) #31	Dusp10 (MGP_PahariEiJ_G0028245) #32	1700056E22Rik (MGP_PahariEiJ_G0028246) #33	Hlx (MGP_PahariEiJ_G0028247) #34	Mtarc1 (MGP_PahariEiJ_G0028248) #35	Mtarc2 (MGP_PahariEiJ_G0028249) #36	C130074G19Rik (MGP_PahariEiJ_G0028250) #37
Rat	MODERN SPECIES	4	LOC498300 (ENSRNOG00000050163) ##18	RGD1564463 (ENSRNOG00000003601) ##18	Nvl (ENSRNOG00000003629) #8	Cnih4 (ENSRNOG00000003717) #9	Wdr26 (ENSRNOG00000003723) #10	Cnih3 (ENSRNOG00000022724) #11	Ccdc121rt (ENSRNOG00000022717) #12	Dnah14 (ENSRNOG00000070092) #13	Lbr (ENSRNOG00000052574) #14	Enah (ENSRNOG00000031934) #15	Srp9 (ENSRNOG00000003211) #16	Degs1 (ENSRNOG00000003223) #18	Fbxo28 (ENSRNOG00000000066) #19	Tp53bp2 (ENSRNOG00000003237) #20	Capn2 (ENSRNOG00000034015) #21	Capn8 (ENSRNOG00000003468) #22	Ccdc185 (ENSRNOG00000022104) #23	Susd4 (ENSRNOG00000003562) #24	Tlr5 (ENSRNOG00000022067) #25	Disp1 (ENSRNOG00000003635) #26	Brox (ENSRNOG00000052963) #27	Aida (ENSRNOG00000058805) #28	Mia3 (ENSRNOG00000059202) ##29	Taf1a (ENSRNOG00000061139) #30	Hhipl2 (ENSRNOG00000056400) #31	LOC100912365 (ENSRNOG00000004066) #33	Dusp10 (ENSRNOG00000004003) #32	Hlx (ENSRNOG00000002309) #34	Mtarc1 (ENSRNOG00000037850) #35	RGD1310587 (ENSRNOG00000002322) #37	Mark1 (ENSRNOG00000002339)