Murinae	ANCESTRAL SPECIES	41	ENSGT01090000260080.b.a	ENSGT00390000002403	ENSGT00620000087993.a.a	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT00940000154319.u.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772 #24
Mus	ANCESTRAL SPECIES	15	ENSGT00940000163194	ENSGT00730000111419 #7	ENSGT00940000155725 #8	ENSGT00940000158991 #9	ENSGT00940000156987 #10	ENSGT00940000155676 #13	ENSGT00940000163953 #11	ENSGT00940000162991 #12	ENSGT00940000162821 #14	ENSGT00390000006522.b #15	ENSGT01030000234610.a.a #16	ENSGT01030000234610.a.b #17	ENSGT01030000234610.b.b #18	ENSGT00390000003880.b.b #19	ENSGT00390000009168 #20	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772 #24	ENSGT00940000157632 #26	ENSGT00510000049207 #27	ENSGT00940000160565 #28	ENSGT00730000111285 #29	ENSGT00940000159202 #30	ENSGT00390000009937 #31	ENSGT00940000160636 #32	ENSGT00940000155141 #33	ENSGT00510000047616.b #34	ENSGT00390000018131 #35	ENSGT00390000010369 #36	ENSGT00940000157815 #37	ENSGT00390000000358
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000163194	ENSGT00730000111419 #7	ENSGT00940000155725 #8	ENSGT00940000158991 #9	ENSGT00940000156987 #10	ENSGT00940000155676 #13	ENSGT00940000163953 #11	ENSGT00940000162991 #12	ENSGT00940000162821 #14	ENSGT00390000006522.b #15	ENSGT01030000234610.a.a #16	ENSGT01030000234610.a.b #17	ENSGT01030000234610.b.b #18	ENSGT00390000003880.b.b #19	ENSGT00390000009168 #20	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.ab #25	ENSGT00940000157632 #26	ENSGT00510000049207 #27	ENSGT00940000160565 #28	ENSGT00730000111285 #29	ENSGT00940000159202 #30	ENSGT00390000009937 #31	ENSGT00940000160636 #32	ENSGT00940000155141 #33	ENSGT00510000047616.b #34	ENSGT00390000018131 #35	ENSGT00390000010369 #36	ENSGT00940000157815 #37	ENSGT00390000000358
Ryukyu mouse	MODERN SPECIES	1	Marcks (MGP_CAROLIEiJ_G0015240) #7	Hdac2 (MGP_CAROLIEiJ_G0015239) #8	Hs3st5 (MGP_CAROLIEiJ_G0015238) #9	Frk (MGP_CAROLIEiJ_G0015237) #10	Col10a1 (MGP_CAROLIEiJ_G0015236) #11	Tspyl4 (MGP_CAROLIEiJ_G0015235) #12	Nt5dc1 (MGP_CAROLIEiJ_G0015234) #13	Tspyl1 (MGP_CAROLIEiJ_G0015233) #14	Dse (MGP_CAROLIEiJ_G0015232) #15	Calhm6 (MGP_CAROLIEiJ_G0015231) #16	Calhm5 (MGP_CAROLIEiJ_G0015230) #17	Calhm4 (MGP_CAROLIEiJ_G0015229) #18	Trappc3l (MGP_CAROLIEiJ_G0015228) #19	Rwdd1 (MGP_CAROLIEiJ_G0015227) #20	MGP_CAROLIEiJ_G0015226 #21	Zup1 (MGP_CAROLIEiJ_G0015225) #22	Rsph4a (MGP_CAROLIEiJ_G0015224) #23	MGP_CAROLIEiJ_G0015223 #24	Sult3a1 (MGP_CAROLIEiJ_G0015222) #25	Clvs2 (MGP_CAROLIEiJ_G0015221) #26	Trdn (MGP_CAROLIEiJ_G0015220) #27	Nkain2 (MGP_CAROLIEiJ_G0015219) #28	Rnf217 (MGP_CAROLIEiJ_G0015218) #29	Tpd52l1 (MGP_CAROLIEiJ_G0015217) #30	Hddc2 (MGP_CAROLIEiJ_G0015216) #31	Hey2 (MGP_CAROLIEiJ_G0015215) #32	Ncoa7 (MGP_CAROLIEiJ_G0015214) #33	Hint3 (MGP_CAROLIEiJ_G0015213) #34	Trmt11 (MGP_CAROLIEiJ_G0015212) #35	Cenpw (MGP_CAROLIEiJ_G0015211) #36	Rspo3 (MGP_CAROLIEiJ_G0015210) #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000163194	ENSGT00730000111419 #7	ENSGT00940000155725 #8	ENSGT00940000158991 #9	ENSGT00940000156987 #10	ENSGT00940000155676 #13	ENSGT00940000163953 #11	ENSGT00940000162991 #12	ENSGT00940000162821 #14	ENSGT00390000006522.b #15	ENSGT01030000234610.a.a #16	ENSGT01030000234610.a.b #17	ENSGT00390000003880.b.b #19	ENSGT01030000234610.b.b #18	ENSGT00390000009168 #20	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.ab #25	ENSGT00940000156772.`b #24	ENSGT00940000157632 #26	ENSGT00510000049207 #27	ENSGT00940000160565 #28	ENSGT00730000111285 #29	ENSGT00940000159202 #30	ENSGT00390000009937 #31	ENSGT00940000160636 #32	ENSGT00940000155141 #33	ENSGT00510000047616.b #34	ENSGT00390000018131 #35	ENSGT00390000010369.m #36	ENSGT00940000157815 #37
Mouse	MODERN SPECIES	1	Marcks (ENSMUSG00000069662) #7	Hdac2 (ENSMUSG00000019777) #8	Hs3st5 (ENSMUSG00000044499) #9	Amd2 (ENSMUSG00000063953)	Frk (ENSMUSG00000019779) #10	Col10a1 (ENSMUSG00000039462) #11	Tspyl4 (ENSMUSG00000039485) #12	Nt5dc1 (ENSMUSG00000039480) #13	Tspyl1 (ENSMUSG00000047514) #14	Dse (ENSMUSG00000039497) #15	Calhm6 (ENSMUSG00000046031) #16	Calhm5 (ENSMUSG00000049872) #17	Calhm4 (ENSMUSG00000039508) #18	Trappc3l (ENSMUSG00000071340) #19	Rwdd1 (ENSMUSG00000019782) #20	Zup1 (ENSMUSG00000039531) #22	Rsph4a (ENSMUSG00000039552) #23	Sult3a1 (ENSMUSG00000069668) #25	Sult3a2 (ENSMUSG00000090298) #24	Clvs2 (ENSMUSG00000019785) #26	Trdn (ENSMUSG00000019787) #27	Nkain2 (ENSMUSG00000069670) #28	Rnf217 (ENSMUSG00000063760) #29	Tpd52l1 (ENSMUSG00000000296) #30	Hddc2 (ENSMUSG00000000295) #31	Hey2 (ENSMUSG00000019789) #32	Ncoa7 (ENSMUSG00000039697) #33	Hint3 (ENSMUSG00000019791) #34	Trmt11 (ENSMUSG00000019792) #35	Cenpw (ENSMUSG00000075266) #36	Rspo3 (ENSMUSG00000019880) #37
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000163194	ENSGT00730000111419 #7	ENSGT00940000155725 #8	ENSGT00940000158991 #9	ENSGT00940000156987 #10	ENSGT00940000155676 #13	ENSGT00940000163953 #11	ENSGT00940000162991 #12	ENSGT00940000162821 #14	ENSGT00390000006522.b #15	ENSGT01030000234610.a.a #16	ENSGT01030000234610.a.b #17	ENSGT01030000234610.b.b #18	ENSGT00390000009168 #20	ENSGT00390000003880.b.b #19	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.ab #25	ENSGT00940000156772.`b #24	ENSGT00940000157632 #26	ENSGT00510000049207 #27	ENSGT00940000160565 #28	ENSGT00730000111285 #29	ENSGT00940000159202 #30	ENSGT00390000009937 #31	ENSGT00940000160636 #32	ENSGT00940000155141 #33	ENSGT00510000047616.b #34	ENSGT00390000018131 #35	ENSGT00390000010369.m #36	ENSGT00940000157815 #37
Steppe mouse	MODERN SPECIES	1833																Zup1 (ENSMSIG00000001266) #22	Rsph4a (ENSMSIG00000001351) #23	Sult3a1 (ENSMSIG00000001379) #25
spretus	MODERN SPECIES	1	Marcks (MGP_SPRETEiJ_G0016049) #7	Hdac2 (MGP_SPRETEiJ_G0016048) #8	Hs3st5 (MGP_SPRETEiJ_G0016047) #9	Frk (MGP_SPRETEiJ_G0016046) #10	Col10a1 (MGP_SPRETEiJ_G0016045) #11	Nt5dc1 (MGP_SPRETEiJ_G0016044) #13	Tspyl4 (MGP_SPRETEiJ_G0016043) #12	Tspyl1 (MGP_SPRETEiJ_G0016042) #14	Dse (MGP_SPRETEiJ_G0016041) #15	Calhm6 (MGP_SPRETEiJ_G0016040) #16	Calhm5 (MGP_SPRETEiJ_G0016039) #17	Calhm4 (MGP_SPRETEiJ_G0016038) #18	Trappc3l (MGP_SPRETEiJ_G0016037) #19	Rwdd1 (MGP_SPRETEiJ_G0016036) #20	MGP_SPRETEiJ_G0016035	Zup1 (MGP_SPRETEiJ_G0016034) #22	Rsph4a (MGP_SPRETEiJ_G0016033) #23	Sult3a1 (MGP_SPRETEiJ_G0016032) #25	MGP_SPRETEiJ_G0016031 #24	Clvs2 (MGP_SPRETEiJ_G0016030) #26	Trdn (MGP_SPRETEiJ_G0016029) #27	Nkain2 (MGP_SPRETEiJ_G0016028) #28	Rnf217 (MGP_SPRETEiJ_G0016027) #29	Tpd52l1 (MGP_SPRETEiJ_G0016026) #30	Hddc2 (MGP_SPRETEiJ_G0016025) #31	Hey2 (MGP_SPRETEiJ_G0016024) #32	Ncoa7 (MGP_SPRETEiJ_G0016023) #33	Hint3 (MGP_SPRETEiJ_G0016022) #34	Trmt11 (MGP_SPRETEiJ_G0016021) #35	Cenpw (MGP_SPRETEiJ_G0016020) #36	Rspo3 (MGP_SPRETEiJ_G0016019) #37
Shrew mouse	MODERN SPECIES	22	Marcks (MGP_PahariEiJ_G0030657) #7	Hdac2 (MGP_PahariEiJ_G0030656) #8	Hs3st5 (MGP_PahariEiJ_G0030655) #9	Frk (MGP_PahariEiJ_G0030654) #10	Col10a1 (MGP_PahariEiJ_G0030653) #11	Tspyl4 (MGP_PahariEiJ_G0030652) #12	Nt5dc1 (MGP_PahariEiJ_G0030651) #13	Tspyl1 (MGP_PahariEiJ_G0030650) #14	Dse (MGP_PahariEiJ_G0030649) #15	MGP_PahariEiJ_G0030648 #16	Calhm5 (MGP_PahariEiJ_G0030647) #17	Calhm4 (MGP_PahariEiJ_G0030646) #18	Trappc3l (MGP_PahariEiJ_G0030645) #19	Rwdd1 (MGP_PahariEiJ_G0030644) #20	MGP_PahariEiJ_G0030643	Zup1 (MGP_PahariEiJ_G0030642) #22	Rsph4a (MGP_PahariEiJ_G0030641) #23	MGP_PahariEiJ_G0030640 #26
Rat	MODERN SPECIES	12	Cep85l (ENSRNOG00000000414)	ENSRNOG00000066051	Slc35f1 (ENSRNOG00000000412)	Nus1 (ENSRNOG00000000411)	Nepn (ENSRNOG00000000410)	ENSRNOG00000070377	Gopc (ENSRNOG00000000408)	Dcbld1 (ENSRNOG00000000407)	LOC100911055 (ENSRNOG00000033891)	Ros1 (ENSRNOG00000000406)	Vgll2 (ENSRNOG00000000405)	Rfx6 (ENSRNOG00000027949)	ENSRNOG00000070167	Gprc6a (ENSRNOG00000000401)	Kpna5 (ENSRNOG00000030109)	Zup1 (ENSRNOG00000000398) #22	Rsph4a (ENSRNOG00000049696) #23	Ccar1 (ENSRNOG00000000397)	Stox1 (ENSRNOG00000023712)	Ddx50 (ENSRNOG00000000396)	Ddx21 (ENSRNOG00000043099)	Kifbp (ENSRNOG00000000395)	Srgn (ENSRNOG00000000394)	Vps26a (ENSRNOG00000030683)	Supv3l1 (ENSRNOG00000000392)	Hkdc1 (ENSRNOG00000049045)	Hk1 (ENSRNOG00000046891)	Tacr2 (ENSRNOG00000050658)	Tspan15 (ENSRNOG00000046204)	Neurog3 (ENSRNOG00000024413)	Fam241b (ENSRNOG00000000551)