Mus	ANCESTRAL SPECIES	15	ENSGT00940000163194	ENSGT00730000111419 #7	ENSGT00940000155725 #8	ENSGT00940000158991 #9	ENSGT00940000156987 #10	ENSGT00940000155676 #12	ENSGT00940000163953 #11	ENSGT00940000162991 #13	ENSGT00940000162821 #14	ENSGT00390000006522.b #15	ENSGT01030000234610.a.a #16	ENSGT01030000234610.a.b #17	ENSGT01030000234610.b.b #18	ENSGT00390000003880.b.b #19	ENSGT00390000009168 #20	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772 #24	ENSGT00940000157632 #26	ENSGT00510000049207 #27	ENSGT00940000160565 #28	ENSGT00730000111285 #29	ENSGT00940000159202 #30	ENSGT00390000009937 #31	ENSGT00940000160636 #32	ENSGT00940000155141 #33	ENSGT00510000047616.b #34	ENSGT00390000018131 #35	ENSGT00390000010369 #36	ENSGT00940000157815 #37	ENSGT00390000000358
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000163194	ENSGT00730000111419 #7	ENSGT00940000155725 #8	ENSGT00940000158991 #9	ENSGT00940000156987 #10	ENSGT00940000155676 #12	ENSGT00940000163953 #11	ENSGT00940000162991 #13	ENSGT00940000162821 #14	ENSGT00390000006522.b #15	ENSGT01030000234610.a.a #16	ENSGT01030000234610.a.b #17	ENSGT01030000234610.b.b #18	ENSGT00390000003880.b.b #19	ENSGT00390000009168 #20	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.ab #24	ENSGT00940000157632 #26	ENSGT00510000049207 #27	ENSGT00940000160565 #28	ENSGT00730000111285 #29	ENSGT00940000159202 #30	ENSGT00390000009937 #31	ENSGT00940000160636 #32	ENSGT00940000155141 #33	ENSGT00510000047616.b #34	ENSGT00390000018131 #35	ENSGT00390000010369 #36	ENSGT00940000157815 #37	ENSGT00390000000358
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000163194	ENSGT00730000111419 #7	ENSGT00940000155725 #8	ENSGT00940000158991 #9	ENSGT00940000156987 #10	ENSGT00940000155676 #12	ENSGT00940000163953 #11	ENSGT00940000162991 #13	ENSGT00940000162821 #14	ENSGT00390000006522.b #15	ENSGT01030000234610.a.a #16	ENSGT01030000234610.a.b #17	ENSGT00390000003880.b.b #19	ENSGT01030000234610.b.b #18	ENSGT00390000009168 #20	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.ab #24	ENSGT00940000156772.`b #25	ENSGT00940000157632 #26	ENSGT00510000049207 #27	ENSGT00940000160565 #28	ENSGT00730000111285 #29	ENSGT00940000159202 #30	ENSGT00390000009937 #31	ENSGT00940000160636 #32	ENSGT00940000155141 #33	ENSGT00510000047616.b #34	ENSGT00390000018131 #35	ENSGT00390000010369.m #36	ENSGT00940000157815 #37
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000163194	ENSGT00730000111419 #7	ENSGT00940000155725 #8	ENSGT00940000158991 #9	ENSGT00940000156987 #10	ENSGT00940000155676 #12	ENSGT00940000163953 #11	ENSGT00940000162991 #13	ENSGT00940000162821 #14	ENSGT00390000006522.b #15	ENSGT01030000234610.a.a #16	ENSGT01030000234610.a.b #17	ENSGT01030000234610.b.b #18	ENSGT00390000009168 #20	ENSGT00390000003880.b.b #19	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.ab #24	ENSGT00940000156772.`b #25	ENSGT00940000157632 #26	ENSGT00510000049207 #27	ENSGT00940000160565 #28	ENSGT00730000111285 #29	ENSGT00940000159202 #30	ENSGT00390000009937 #31	ENSGT00940000160636 #32	ENSGT00940000155141 #33	ENSGT00510000047616.b #34	ENSGT00390000018131 #35	ENSGT00390000010369.m #36	ENSGT00940000157815 #37
spretus	MODERN SPECIES	1	Marcks (MGP_SPRETEiJ_G0016049) #7	Hdac2 (MGP_SPRETEiJ_G0016048) #8	Hs3st5 (MGP_SPRETEiJ_G0016047) #9	Frk (MGP_SPRETEiJ_G0016046) #10	Col10a1 (MGP_SPRETEiJ_G0016045) #11	Nt5dc1 (MGP_SPRETEiJ_G0016044) #12	Tspyl4 (MGP_SPRETEiJ_G0016043) #13	Tspyl1 (MGP_SPRETEiJ_G0016042) #14	Dse (MGP_SPRETEiJ_G0016041) #15	Calhm6 (MGP_SPRETEiJ_G0016040) #16	Calhm5 (MGP_SPRETEiJ_G0016039) #17	Calhm4 (MGP_SPRETEiJ_G0016038) #18	Trappc3l (MGP_SPRETEiJ_G0016037) #19	Rwdd1 (MGP_SPRETEiJ_G0016036) #20	MGP_SPRETEiJ_G0016035 #21	Zup1 (MGP_SPRETEiJ_G0016034) #22	Rsph4a (MGP_SPRETEiJ_G0016033) #23	Sult3a1 (MGP_SPRETEiJ_G0016032) #24	MGP_SPRETEiJ_G0016031 #25	Clvs2 (MGP_SPRETEiJ_G0016030) #26	Trdn (MGP_SPRETEiJ_G0016029) #27	Nkain2 (MGP_SPRETEiJ_G0016028) #28	Rnf217 (MGP_SPRETEiJ_G0016027) #29	Tpd52l1 (MGP_SPRETEiJ_G0016026) #30	Hddc2 (MGP_SPRETEiJ_G0016025) #31	Hey2 (MGP_SPRETEiJ_G0016024) #32	Ncoa7 (MGP_SPRETEiJ_G0016023) #33	Hint3 (MGP_SPRETEiJ_G0016022) #34	Trmt11 (MGP_SPRETEiJ_G0016021) #35	Cenpw (MGP_SPRETEiJ_G0016020) #36	Rspo3 (MGP_SPRETEiJ_G0016019) #37
Steppe mouse	MODERN SPECIES	1833																Zup1 (ENSMSIG00000001266) #22	Rsph4a (ENSMSIG00000001351) #23	Sult3a1 (ENSMSIG00000001379) #24
Mouse	MODERN SPECIES	1	Marcks (ENSMUSG00000069662) #7	Hdac2 (ENSMUSG00000019777) #8	Hs3st5 (ENSMUSG00000044499) #9	Amd2 (ENSMUSG00000063953)	Frk (ENSMUSG00000019779) #10	Col10a1 (ENSMUSG00000039462) #11	Tspyl4 (ENSMUSG00000039485) #13	Nt5dc1 (ENSMUSG00000039480) #12	Tspyl1 (ENSMUSG00000047514) #14	Dse (ENSMUSG00000039497) #15	Calhm6 (ENSMUSG00000046031) #16	Calhm5 (ENSMUSG00000049872) #17	Calhm4 (ENSMUSG00000039508) #18	Trappc3l (ENSMUSG00000071340) #19	Rwdd1 (ENSMUSG00000019782) #20	Zup1 (ENSMUSG00000039531) #22	Rsph4a (ENSMUSG00000039552) #23	Sult3a1 (ENSMUSG00000069668) #24	Sult3a2 (ENSMUSG00000090298) #25	Clvs2 (ENSMUSG00000019785) #26	Trdn (ENSMUSG00000019787) #27	Nkain2 (ENSMUSG00000069670) #28	Rnf217 (ENSMUSG00000063760) #29	Tpd52l1 (ENSMUSG00000000296) #30	Hddc2 (ENSMUSG00000000295) #31	Hey2 (ENSMUSG00000019789) #32	Ncoa7 (ENSMUSG00000039697) #33	Hint3 (ENSMUSG00000019791) #34	Trmt11 (ENSMUSG00000019792) #35	Cenpw (ENSMUSG00000075266) #36	Rspo3 (ENSMUSG00000019880) #37
Ryukyu mouse	MODERN SPECIES	1	Marcks (MGP_CAROLIEiJ_G0015240) #7	Hdac2 (MGP_CAROLIEiJ_G0015239) #8	Hs3st5 (MGP_CAROLIEiJ_G0015238) #9	Frk (MGP_CAROLIEiJ_G0015237) #10	Col10a1 (MGP_CAROLIEiJ_G0015236) #11	Tspyl4 (MGP_CAROLIEiJ_G0015235) #13	Nt5dc1 (MGP_CAROLIEiJ_G0015234) #12	Tspyl1 (MGP_CAROLIEiJ_G0015233) #14	Dse (MGP_CAROLIEiJ_G0015232) #15	Calhm6 (MGP_CAROLIEiJ_G0015231) #16	Calhm5 (MGP_CAROLIEiJ_G0015230) #17	Calhm4 (MGP_CAROLIEiJ_G0015229) #18	Trappc3l (MGP_CAROLIEiJ_G0015228) #19	Rwdd1 (MGP_CAROLIEiJ_G0015227) #20	MGP_CAROLIEiJ_G0015226	Zup1 (MGP_CAROLIEiJ_G0015225) #22	Rsph4a (MGP_CAROLIEiJ_G0015224) #23	MGP_CAROLIEiJ_G0015223 #25	Sult3a1 (MGP_CAROLIEiJ_G0015222) #24	Clvs2 (MGP_CAROLIEiJ_G0015221) #26	Trdn (MGP_CAROLIEiJ_G0015220) #27	Nkain2 (MGP_CAROLIEiJ_G0015219) #28	Rnf217 (MGP_CAROLIEiJ_G0015218) #29	Tpd52l1 (MGP_CAROLIEiJ_G0015217) #30	Hddc2 (MGP_CAROLIEiJ_G0015216) #31	Hey2 (MGP_CAROLIEiJ_G0015215) #32	Ncoa7 (MGP_CAROLIEiJ_G0015214) #33	Hint3 (MGP_CAROLIEiJ_G0015213) #34	Trmt11 (MGP_CAROLIEiJ_G0015212) #35	Cenpw (MGP_CAROLIEiJ_G0015211) #36	Rspo3 (MGP_CAROLIEiJ_G0015210) #37
Shrew mouse	MODERN SPECIES	22	Marcks (MGP_PahariEiJ_G0030657) #7	Hdac2 (MGP_PahariEiJ_G0030656) #8	Hs3st5 (MGP_PahariEiJ_G0030655) #9	Frk (MGP_PahariEiJ_G0030654) #10	Col10a1 (MGP_PahariEiJ_G0030653) #11	Tspyl4 (MGP_PahariEiJ_G0030652) #13	Nt5dc1 (MGP_PahariEiJ_G0030651) #12	Tspyl1 (MGP_PahariEiJ_G0030650) #14	Dse (MGP_PahariEiJ_G0030649) #15	MGP_PahariEiJ_G0030648 #16	Calhm5 (MGP_PahariEiJ_G0030647) #17	Calhm4 (MGP_PahariEiJ_G0030646) #18	Trappc3l (MGP_PahariEiJ_G0030645) #19	Rwdd1 (MGP_PahariEiJ_G0030644) #20	MGP_PahariEiJ_G0030643	Zup1 (MGP_PahariEiJ_G0030642) #22	Rsph4a (MGP_PahariEiJ_G0030641) #23	MGP_PahariEiJ_G0030640 #26