Rodentia ANCESTRAL SPECIES 6 ENSGT00390000004692.d.b ENSGT01090000260080.b.a ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772 #24 ENSGT00390000009168 ENSGT01030000234610.b.b ENSGT00390000003880.b.b ENSGT01030000234610.a.b ENSGT01030000234610.a.a ENSGT00390000006522.b ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 ENSGT00940000163953 ENSGT00940000156987 ENSGT00940000158991 Rodentia_B ANCESTRAL SPECIES 18 ENSGT00390000004692.d.b ENSGT01090000260080.b.a ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772 #24 ENSGT00390000009168 ENSGT01030000234610.b.b ENSGT00390000003880.b.b ENSGT01030000234610.a.b ENSGT01030000234610.a.a ENSGT00390000006522.b ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000163953 ENSGT00940000155676 ENSGT00940000156987 ENSGT00940000158991 Myomorpha ANCESTRAL SPECIES 21 ENSGT00390000004692.d.b ENSGT01090000260080.b.a ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772 #24 ENSGT00390000009168 ENSGT01030000234610.b.b ENSGT00390000003880.b.b ENSGT01030000234610.a.b ENSGT01030000234610.a.a ENSGT00390000006522.b ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000163953 ENSGT00940000155676 ENSGT00940000156987 ENSGT00940000158991 Muroidea ANCESTRAL SPECIES 22 ENSGT00390000004692.d.b ENSGT01090000260080.b.a ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772 #24 ENSGT00390000009168 ENSGT01030000234610.b.b ENSGT00390000003880.b.b ENSGT01030000234610.a.b ENSGT01030000234610.a.a ENSGT00390000006522.b ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000163953 ENSGT00940000155676 ENSGT00940000156987 ENSGT00940000158991 Muroidea_A ANCESTRAL SPECIES 11 ENSGT01090000260080.b.a ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT00940000154319.u.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772 #24 ENSGT00390000009168 ENSGT01030000234610.b.b ENSGT00390000003880.b.b ENSGT01030000234610.a.b ENSGT01030000234610.a.a ENSGT00390000006522.b ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000163953 ENSGT00940000155676 ENSGT00940000156987 ENSGT00940000158991 ENSGT00940000155725 Murinae ANCESTRAL SPECIES 41 ENSGT01090000260080.b.a ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT00940000154319.u.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772 #24 Mus ANCESTRAL SPECIES 15 ENSGT00940000163194 ENSGT00730000111419 ENSGT00940000155725 ENSGT00940000158991 ENSGT00940000156987 ENSGT00940000155676 ENSGT00940000163953 ENSGT00940000162991 ENSGT00940000162821 ENSGT00390000006522.b ENSGT01030000234610.a.a ENSGT01030000234610.a.b ENSGT01030000234610.b.b ENSGT00390000003880.b.b ENSGT00390000009168 ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772 #24 ENSGT00940000157632 ENSGT00510000049207 ENSGT00940000160565 ENSGT00730000111285 ENSGT00940000159202 ENSGT00390000009937 ENSGT00940000160636 ENSGT00940000155141 ENSGT00510000047616.b ENSGT00390000018131 ENSGT00390000010369 ENSGT00940000157815 ENSGT00390000000358 Mus_A ANCESTRAL SPECIES 11 ENSGT00940000163194 ENSGT00730000111419 ENSGT00940000155725 ENSGT00940000158991 ENSGT00940000156987 ENSGT00940000155676 ENSGT00940000163953 ENSGT00940000162991 ENSGT00940000162821 ENSGT00390000006522.b ENSGT01030000234610.a.a ENSGT01030000234610.a.b ENSGT01030000234610.b.b ENSGT00390000003880.b.b ENSGT00390000009168 ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772.ab #24 ENSGT00940000157632 ENSGT00510000049207 ENSGT00940000160565 ENSGT00730000111285 ENSGT00940000159202 ENSGT00390000009937 ENSGT00940000160636 ENSGT00940000155141 ENSGT00510000047616.b ENSGT00390000018131 ENSGT00390000010369 ENSGT00940000157815 ENSGT00390000000358 Mus_B ANCESTRAL SPECIES 10 ENSGT00940000163194 ENSGT00730000111419 ENSGT00940000155725 ENSGT00940000158991 ENSGT00940000156987 ENSGT00940000155676 ENSGT00940000163953 ENSGT00940000162991 ENSGT00940000162821 ENSGT00390000006522.b ENSGT01030000234610.a.a ENSGT01030000234610.a.b ENSGT00390000003880.b.b ENSGT01030000234610.b.b ENSGT00390000009168 ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772.ab #24 ENSGT00940000156772.`b ##24 ENSGT00940000157632 ENSGT00510000049207 ENSGT00940000160565 ENSGT00730000111285 ENSGT00940000159202 ENSGT00390000009937 ENSGT00940000160636 ENSGT00940000155141 ENSGT00510000047616.b ENSGT00390000018131 ENSGT00390000010369.m ENSGT00940000157815 Mus_C ANCESTRAL SPECIES 7 ENSGT00940000163194 ENSGT00730000111419 ENSGT00940000155725 ENSGT00940000158991 ENSGT00940000156987 ENSGT00940000155676 ENSGT00940000163953 ENSGT00940000162991 ENSGT00940000162821 ENSGT00390000006522.b ENSGT01030000234610.a.a ENSGT01030000234610.a.b ENSGT01030000234610.b.b ENSGT00390000009168 ENSGT00390000003880.b.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772.ab #24 ENSGT00940000156772.`b ##24 ENSGT00940000157632 ENSGT00510000049207 ENSGT00940000160565 ENSGT00730000111285 ENSGT00940000159202 ENSGT00390000009937 ENSGT00940000160636 ENSGT00940000155141 ENSGT00510000047616.b ENSGT00390000018131 ENSGT00390000010369.m ENSGT00940000157815 Steppe mouse MODERN SPECIES 1833 Zup1 (ENSMSIG00000001266) #22 Rsph4a (ENSMSIG00000001351) #23 Sult3a1 (ENSMSIG00000001379) #24 spretus MODERN SPECIES 1 Marcks (MGP_SPRETEiJ_G0016049) Hdac2 (MGP_SPRETEiJ_G0016048) Hs3st5 (MGP_SPRETEiJ_G0016047) Frk (MGP_SPRETEiJ_G0016046) Col10a1 (MGP_SPRETEiJ_G0016045) Nt5dc1 (MGP_SPRETEiJ_G0016044) Tspyl4 (MGP_SPRETEiJ_G0016043) Tspyl1 (MGP_SPRETEiJ_G0016042) Dse (MGP_SPRETEiJ_G0016041) Calhm6 (MGP_SPRETEiJ_G0016040) Calhm5 (MGP_SPRETEiJ_G0016039) Calhm4 (MGP_SPRETEiJ_G0016038) Trappc3l (MGP_SPRETEiJ_G0016037) Rwdd1 (MGP_SPRETEiJ_G0016036) MGP_SPRETEiJ_G0016035 Zup1 (MGP_SPRETEiJ_G0016034) #22 Rsph4a (MGP_SPRETEiJ_G0016033) #23 Sult3a1 (MGP_SPRETEiJ_G0016032) #24 MGP_SPRETEiJ_G0016031 ##24 Clvs2 (MGP_SPRETEiJ_G0016030) Trdn (MGP_SPRETEiJ_G0016029) Nkain2 (MGP_SPRETEiJ_G0016028) Rnf217 (MGP_SPRETEiJ_G0016027) Tpd52l1 (MGP_SPRETEiJ_G0016026) Hddc2 (MGP_SPRETEiJ_G0016025) Hey2 (MGP_SPRETEiJ_G0016024) Ncoa7 (MGP_SPRETEiJ_G0016023) Hint3 (MGP_SPRETEiJ_G0016022) Trmt11 (MGP_SPRETEiJ_G0016021) Cenpw (MGP_SPRETEiJ_G0016020) Rspo3 (MGP_SPRETEiJ_G0016019) Mouse MODERN SPECIES 1 Marcks (ENSMUSG00000069662) Hdac2 (ENSMUSG00000019777) Hs3st5 (ENSMUSG00000044499) Amd2 (ENSMUSG00000063953) Frk (ENSMUSG00000019779) Col10a1 (ENSMUSG00000039462) Tspyl4 (ENSMUSG00000039485) Nt5dc1 (ENSMUSG00000039480) Tspyl1 (ENSMUSG00000047514) Dse (ENSMUSG00000039497) Calhm6 (ENSMUSG00000046031) Calhm5 (ENSMUSG00000049872) Calhm4 (ENSMUSG00000039508) Trappc3l (ENSMUSG00000071340) Rwdd1 (ENSMUSG00000019782) Zup1 (ENSMUSG00000039531) #22 Rsph4a (ENSMUSG00000039552) #23 Sult3a1 (ENSMUSG00000069668) #24 Sult3a2 (ENSMUSG00000090298) ##24 Clvs2 (ENSMUSG00000019785) Trdn (ENSMUSG00000019787) Nkain2 (ENSMUSG00000069670) Rnf217 (ENSMUSG00000063760) Tpd52l1 (ENSMUSG00000000296) Hddc2 (ENSMUSG00000000295) Hey2 (ENSMUSG00000019789) Ncoa7 (ENSMUSG00000039697) Hint3 (ENSMUSG00000019791) Trmt11 (ENSMUSG00000019792) Cenpw (ENSMUSG00000075266) Rspo3 (ENSMUSG00000019880) Ryukyu mouse MODERN SPECIES 1 Marcks (MGP_CAROLIEiJ_G0015240) Hdac2 (MGP_CAROLIEiJ_G0015239) Hs3st5 (MGP_CAROLIEiJ_G0015238) Frk (MGP_CAROLIEiJ_G0015237) Col10a1 (MGP_CAROLIEiJ_G0015236) Tspyl4 (MGP_CAROLIEiJ_G0015235) Nt5dc1 (MGP_CAROLIEiJ_G0015234) Tspyl1 (MGP_CAROLIEiJ_G0015233) Dse (MGP_CAROLIEiJ_G0015232) Calhm6 (MGP_CAROLIEiJ_G0015231) Calhm5 (MGP_CAROLIEiJ_G0015230) Calhm4 (MGP_CAROLIEiJ_G0015229) Trappc3l (MGP_CAROLIEiJ_G0015228) Rwdd1 (MGP_CAROLIEiJ_G0015227) MGP_CAROLIEiJ_G0015226 Zup1 (MGP_CAROLIEiJ_G0015225) #22 Rsph4a (MGP_CAROLIEiJ_G0015224) #23 MGP_CAROLIEiJ_G0015223 ##24 Sult3a1 (MGP_CAROLIEiJ_G0015222) #24 Clvs2 (MGP_CAROLIEiJ_G0015221) Trdn (MGP_CAROLIEiJ_G0015220) Nkain2 (MGP_CAROLIEiJ_G0015219) Rnf217 (MGP_CAROLIEiJ_G0015218) Tpd52l1 (MGP_CAROLIEiJ_G0015217) Hddc2 (MGP_CAROLIEiJ_G0015216) Hey2 (MGP_CAROLIEiJ_G0015215) Ncoa7 (MGP_CAROLIEiJ_G0015214) Hint3 (MGP_CAROLIEiJ_G0015213) Trmt11 (MGP_CAROLIEiJ_G0015212) Cenpw (MGP_CAROLIEiJ_G0015211) Rspo3 (MGP_CAROLIEiJ_G0015210) Shrew mouse MODERN SPECIES 22 Marcks (MGP_PahariEiJ_G0030657) Hdac2 (MGP_PahariEiJ_G0030656) Hs3st5 (MGP_PahariEiJ_G0030655) Frk (MGP_PahariEiJ_G0030654) Col10a1 (MGP_PahariEiJ_G0030653) Tspyl4 (MGP_PahariEiJ_G0030652) Nt5dc1 (MGP_PahariEiJ_G0030651) Tspyl1 (MGP_PahariEiJ_G0030650) Dse (MGP_PahariEiJ_G0030649) MGP_PahariEiJ_G0030648 Calhm5 (MGP_PahariEiJ_G0030647) Calhm4 (MGP_PahariEiJ_G0030646) Trappc3l (MGP_PahariEiJ_G0030645) Rwdd1 (MGP_PahariEiJ_G0030644) MGP_PahariEiJ_G0030643 Zup1 (MGP_PahariEiJ_G0030642) #22 Rsph4a (MGP_PahariEiJ_G0030641) #23 MGP_PahariEiJ_G0030640 Rat MODERN SPECIES 12 Cep85l (ENSRNOG00000000414) ENSRNOG00000066051 Slc35f1 (ENSRNOG00000000412) Nus1 (ENSRNOG00000000411) Nepn (ENSRNOG00000000410) ENSRNOG00000070377 Gopc (ENSRNOG00000000408) Dcbld1 (ENSRNOG00000000407) LOC100911055 (ENSRNOG00000033891) Ros1 (ENSRNOG00000000406) Vgll2 (ENSRNOG00000000405) Rfx6 (ENSRNOG00000027949) ENSRNOG00000070167 Gprc6a (ENSRNOG00000000401) Kpna5 (ENSRNOG00000030109) Zup1 (ENSRNOG00000000398) #22 Rsph4a (ENSRNOG00000049696) #23 Ccar1 (ENSRNOG00000000397) Stox1 (ENSRNOG00000023712) Ddx50 (ENSRNOG00000000396) Ddx21 (ENSRNOG00000043099) Kifbp (ENSRNOG00000000395) Srgn (ENSRNOG00000000394) Vps26a (ENSRNOG00000030683) Supv3l1 (ENSRNOG00000000392) Hkdc1 (ENSRNOG00000049045) Hk1 (ENSRNOG00000046891) Tacr2 (ENSRNOG00000050658) Tspan15 (ENSRNOG00000046204) Neurog3 (ENSRNOG00000024413) Fam241b (ENSRNOG00000000551) Cricetidae ANCESTRAL SPECIES 11 ENSGT01090000260080.b.a ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT00940000154319.u.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772 #24 ENSGT00390000009168 ENSGT01030000234610.b.b ENSGT01030000234610.a.b ENSGT00390000003880.b.b ENSGT01030000234610.a.a ENSGT00390000006522.b ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000163953 ENSGT00940000155676 ENSGT00940000156987 ENSGT00940000158991 Cricetidae_B ANCESTRAL SPECIES 21 ENSGT00390000004692.d.b ENSGT01090000260080.b.a ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772 #24 ENSGT00390000009168 ENSGT01030000234610.b.b ENSGT01030000234610.a.b ENSGT00390000003880.b.b ENSGT01030000234610.a.a ENSGT00390000006522.b ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 ENSGT00940000156987 ENSGT00940000158991 ENSGT00940000155725 Prairie vole MODERN SPECIES 358 Pln (ENSMOCG00000007426) Cep85l (ENSMOCG00000006570) Slc35f1 (ENSMOCG00000018060) Nus1 (ENSMOCG00000016436) Nepn (ENSMOCG00000015809) Gopc (ENSMOCG00000020068) Dcbld1 (ENSMOCG00000013753) ENSMOCG00000010376 Ros1 (ENSMOCG00000020353) Vgll2 (ENSMOCG00000001216) ENSMOCG00000004706 Rfx6 (ENSMOCG00000013788) Gprc6a (ENSMOCG00000001619) Fam162b (ENSMOCG00000016808) ENSMOCG00000016429 Zup1 (ENSMOCG00000007844) #22 Rsph4a (ENSMOCG00000015792) #23 ENSMOCG00000012673 #24 ENSMOCG00000021295 ENSMOCG00000019458 Crybg1 (ENSMOCG00000017311) Rtn4ip1 (ENSMOCG00000022655) Qrsl1 (ENSMOCG00000015511) Cd24a (ENSMOCG00000004145) ENSMOCG00000019641 Mtres1 (ENSMOCG00000016820) Bend3 (ENSMOCG00000007344) Pdss2 (ENSMOCG00000002520) ENSMOCG00000020152 Sobp (ENSMOCG00000019494) Scml4 (ENSMOCG00000004057) Northern American deer mouse MODERN SPECIES 7 Cep85l (ENSPEMG00000008438) Slc35f1 (ENSPEMG00000030425) Nus1 (ENSPEMG00000023792) Nepn (ENSPEMG00000011390) ENSPEMG00000027015 ENSPEMG00000028213 Gopc (ENSPEMG00000017950) Dcbld1 (ENSPEMG00000023463) Ros1 (ENSPEMG00000018962) Vgll2 (ENSPEMG00000011624) ENSPEMG00000028021 Rfx6 (ENSPEMG00000013570) Gprc6a (ENSPEMG00000021921) Fam162b (ENSPEMG00000022270) ENSPEMG00000021071 Zup1 (ENSPEMG00000019963) #22 Rsph4a (ENSPEMG00000015392) #23 ENSPEMG00000010482 #24 Rwdd1 (ENSPEMG00000000119) Calhm4 (ENSPEMG00000017719) Calhm5 (ENSPEMG00000019478) Trappc3l (ENSPEMG00000019941) Calhm6 (ENSPEMG00000019812) Dse (ENSPEMG00000019781) Tspyl1 (ENSPEMG00000019621) Tspyl4 (ENSPEMG00000031222) Col10a1 (ENSPEMG00000019392) Nt5dc1 (ENSPEMG00000020069) Frk (ENSPEMG00000027385) ENSPEMG00000027759 Hs3st5 (ENSPEMG00000027903) Cricetinae ANCESTRAL SPECIES 7 ENSGT01090000260080.b.a ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT00940000154319.u.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772 #24 ENSGT00390000009168 ENSGT01030000234610.b.b ENSGT01030000234610.a.b ENSGT00390000003880.b.b ENSGT01030000234610.a.a ENSGT00390000006522.b ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000163953 ENSGT00940000155676 ENSGT00940000156987 ENSGT00940000158991 ENSGT00940000155725 Chinese hamster chok1gshd MODERN SPECIES 160 ENSCGRG00001014500 Slc35f1 (ENSCGRG00001016195) Nus1 (ENSCGRG00001010462) Nepn (ENSCGRG00001011193) Gopc (ENSCGRG00001012164) ENSCGRG00001016329 Dcbld1 (ENSCGRG00001014316) Ros1 (ENSCGRG00001019975) ENSCGRG00001008034 Vgll2 (ENSCGRG00001012605) ENSCGRG00001016423 Rfx6 (ENSCGRG00001013519) Gprc6a (ENSCGRG00001019351) Fam162b (ENSCGRG00001013690) ENSCGRG00001017023 Zup1 (ENSCGRG00001019649) #22 Rsph4a (ENSCGRG00001022255) #23 ENSCGRG00001022688 #24 ENSCGRG00001022958 Rwdd1 (ENSCGRG00001000262) Calhm4 (ENSCGRG00001000585) Trappc3l (ENSCGRG00001001357) Calhm5 (ENSCGRG00001015860) Calhm6 (ENSCGRG00001016166) Dse (ENSCGRG00001016755) Tspyl1 (ENSCGRG00001016055) Tspyl4 (ENSCGRG00001015452) Nt5dc1 (ENSCGRG00001019057) Col10a1 (ENSCGRG00001011438) Frk (ENSCGRG00001012098) ENSCGRG00001014662 Golden Hamster MODERN SPECIES 655 Mcm9 (ENSMAUG00000015317) ENSMAUG00000012325 Pln (ENSMAUG00000007750) Cep85l (ENSMAUG00000015193) Slc35f1 (ENSMAUG00000011113) Nus1 (ENSMAUG00000019803) Nepn (ENSMAUG00000018286) Gopc (ENSMAUG00000007546) Dcbld1 (ENSMAUG00000010738) Ros1 (ENSMAUG00000016942) Vgll2 (ENSMAUG00000019922) ENSMAUG00000007444 Rfx6 (ENSMAUG00000002997) Fam162b (ENSMAUG00000012733) ENSMAUG00000009856 Zup1 (ENSMAUG00000012807) #22 Rsph4a (ENSMAUG00000009247) #23 ENSMAUG00000009333 #24 Rwdd1 (ENSMAUG00000001504) Calhm4 (ENSMAUG00000020546) Calhm5 (ENSMAUG00000014804) Trappc3l (ENSMAUG00000004214) Calhm6 (ENSMAUG00000002308) Dse (ENSMAUG00000020240) Tspyl1 (ENSMAUG00000018330) Tspyl4 (ENSMAUG00000007306) Col10a1 (ENSMAUG00000021181) Nt5dc1 (ENSMAUG00000018298) Frk (ENSMAUG00000011561) Hs3st5 (ENSMAUG00000011520) Hdac2 (ENSMAUG00000020410) Upper Galilee mountains blind mole rat MODERN SPECIES 1622 Zup1 (ENSNGAG00000020874) #22 Rsph4a (ENSNGAG00000022773) #23 ENSNGAG00000023286 #24 ENSNGAG00000023845 #24 ENSNGAG00000021507 ENSNGAG00000022138 Calhm4 (ENSNGAG00000011668) Trappc3l (ENSNGAG00000020430) Calhm5 (ENSNGAG00000021647) Calhm6 (ENSNGAG00000022608) Dse (ENSNGAG00000023284) Tspyl1 (ENSNGAG00000002957) Tspyl4 (ENSNGAG00000013340) Nt5dc1 (ENSNGAG00000017414) ENSNGAG00000019635 Frk (ENSNGAG00000023884) Lesser Egyptian jerboa MODERN SPECIES 44 Fam184a (ENSJJAG00000020537) ENSJJAG00000008541 Asf1a (ENSJJAG00000009705) Cep85l (ENSJJAG00000016233) Pln (ENSJJAG00000003066) ENSJJAG00000021447 ENSJJAG00000013262 Slc35f1 (ENSJJAG00000016095) Nus1 (ENSJJAG00000016913) Nepn (ENSJJAG00000011885) Gopc (ENSJJAG00000013218) Dcbld1 (ENSJJAG00000011489) Ros1 (ENSJJAG00000022739) Vgll2 (ENSJJAG00000015020) Rfx6 (ENSJJAG00000020654) Zup1 (ENSJJAG00000016597) #22 Rag1 (ENSJJAG00000003473) ENSJJAG00000014496 ENSJJAG00000019626 Kangaroo rat MODERN SPECIES 476 Asf1a (ENSDORG00000010010) Cep85l (ENSDORG00000008984) Pln (ENSDORG00000028705) ENSDORG00000025142 Slc35f1 (ENSDORG00000011293) ENSDORG00000023742 Nepn (ENSDORG00000026879) Gopc (ENSDORG00000015778) Dcbld1 (ENSDORG00000015776) Ros1 (ENSDORG00000007167) Vgll2 (ENSDORG00000016343) Rfx6 (ENSDORG00000013591) Gprc6a (ENSDORG00000013585) Fam162b (ENSDORG00000024159) ENSDORG00000015949 Zup1 (ENSDORG00000003947) #22 Rsph4a (ENSDORG00000003944) #23 ENSDORG00000025806 #24 Rwdd1 (ENSDORG00000012373) Calhm4 (ENSDORG00000012772) Trappc3l (ENSDORG00000012769) Calhm5 (ENSDORG00000012771) Calhm6 (ENSDORG00000012765) Dse (ENSDORG00000012764) Tspyl4 (ENSDORG00000027297) Nt5dc1 (ENSDORG00000010307) ENSDORG00000010312 Frk (ENSDORG00000000702) Hs3st5 (ENSDORG00000028438) Hdac2 (ENSDORG00000013317) Lama4 (ENSDORG00000012032) Rodentia_A ANCESTRAL SPECIES 8 ENSGT00390000004692.d.b ENSGT00940000169249 ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772 #24 ENSGT00390000009168 ENSGT01030000234610.b.b ENSGT00390000003880.b.b ENSGT01030000234610.a.b ENSGT01030000234610.a.a ENSGT00390000006522.b ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 ENSGT00940000163953 ENSGT00940000156987 ENSGT00940000158991 Sciuridae ANCESTRAL SPECIES 1 ENSGT00390000004692.d.b ENSGT00940000169249 ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772.x #24 ENSGT00940000156772.w #24 ENSGT00390000009168 ENSGT01030000234610.b.b ENSGT00390000003880.b.b ENSGT01030000234610.a.b ENSGT01030000234610.a.a ENSGT00390000006522.b ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000163953 ENSGT00940000155676 ENSGT00940000154317.a.b ENSGT00940000156987 Marmotini ANCESTRAL SPECIES 11 ENSGT01090000260080.b.a ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT01100000266009 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000156772.x #24 ENSGT00940000156772.w #24 ENSGT00390000009168 ENSGT01030000234610.b.b ENSGT01030000234610.a.b ENSGT00390000003880.b.b ENSGT01030000234610.a.a ENSGT00390000006522.b ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 ENSGT00940000163953 ENSGT00940000156987 Marmotini_b ANCESTRAL SPECIES 178 ENSGT01090000260080.b.a ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT01100000266009 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 Squirrel MODERN SPECIES 604 ZUP1 (ENSSTOG00000012338) #22 RSPH4A (ENSSTOG00000033876) #23 ENSSTOG00000025159 #24 Arctic ground squirrel MODERN SPECIES 133 MCM9 (ENSUPAG00010021995) PLN (ENSUPAG00010021993) CEP85L (ENSUPAG00010021985) SLC35F1 (ENSUPAG00010021982) NUS1 (ENSUPAG00010021980) ENSUPAG00010021978 ENSUPAG00010021976 GOPC (ENSUPAG00010021972) DCBLD1 (ENSUPAG00010021968) ROS1 (ENSUPAG00010021948) VGLL2 (ENSUPAG00010021945) RFX6 (ENSUPAG00010021936) GPRC6A (ENSUPAG00010021931) FAM162B (ENSUPAG00010021928) KPNA5 (ENSUPAG00010021924) ENSUPAG00010021922 #22 Alpin marmot MODERN SPECIES 2 ENSMMMG00000016017 PLN (ENSMMMG00000016004) CEP85L (ENSMMMG00000015976) SLC35F1 (ENSMMMG00000015966) NUS1 (ENSMMMG00000015950) ENSMMMG00000015941 ENSMMMG00000015939 GOPC (ENSMMMG00000015918) DCBLD1 (ENSMMMG00000015903) ROS1 (ENSMMMG00000015799) VGLL2 (ENSMMMG00000015787) RFX6 (ENSMMMG00000015641) GPRC6A (ENSMMMG00000015597) FAM162B (ENSMMMG00000015589) KPNA5 (ENSMMMG00000015469) ZUP1 (ENSMMMG00000015434) #22 RSPH4A (ENSMMMG00000015424) #23 ENSMMMG00000015402 #24 ENSMMMG00000015383 #24 ENSMMMG00000015375 #24 RWDD1 (ENSMMMG00000015368) CALHM4 (ENSMMMG00000015364) CALHM5 (ENSMMMG00000015357) CALHM6 (ENSMMMG00000015349) DSE (ENSMMMG00000015341) TSPYL4 (ENSMMMG00000015326) ENSMMMG00000015321 ENSMMMG00000015316 FRK (ENSMMMG00000015306) HS3ST5 (ENSMMMG00000015290) HDAC2 (ENSMMMG00000015264) Eurasian red squirrel MODERN SPECIES 16 ENSSVLG00005007753 CEP85L (ENSSVLG00005007817) ENSSVLG00005008007 PLN (ENSSVLG00005008023) ENSSVLG00005008035 SLC35F1 (ENSSVLG00005008070) ENSSVLG00005008163 ENSSVLG00005008200 GOPC (ENSSVLG00005008267) ROS1 (ENSSVLG00005008411) VGLL2 (ENSSVLG00005008910) RFX6 (ENSSVLG00005008988) GPRC6A (ENSSVLG00005009132) FAM162B (ENSSVLG00005009241) KPNA5 (ENSSVLG00005009288) ZUP1 (ENSSVLG00005009321) #22 RSPH4A (ENSSVLG00005009389) #23 ENSSVLG00005009507 #24 ENSSVLG00005009556 CALHM4 (ENSSVLG00005009602) TRAPPC3L (ENSSVLG00005009643) CALHM5 (ENSSVLG00005009693) CALHM6 (ENSSVLG00005009719) DSE (ENSSVLG00005009768) TSPYL1 (ENSSVLG00005009835) TSPYL4 (ENSSVLG00005009852) NT5DC1 (ENSSVLG00005009872) COL10A1 (ENSSVLG00005009901) FRK (ENSSVLG00005009937) ENSSVLG00005010009 ENSSVLG00005010037 Hystricomorpha ANCESTRAL SPECIES 39 ENSGT00390000004692.d.b ENSGT01090000260080.b.a ENSGT00390000002403 ENSGT00620000087993.a.a ENSGT00390000015655.b ENSGT00390000003223 ENSGT00940000162914 ENSGT00940000156535 ENSGT00940000157334 ENSGT00940000160831 ENSGT00530000063353.a.b.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT00940000155081.D ENSGT00390000002581 ENSGT00940000158276 ENSGT00940000157935 ENSGT00940000157565 ENSGT00390000009155 ENSGT00940000155884 ENSGT00940000159583 ENSGT00390000018730.B ENSGT00940000155134 ENSGT00940000155933.b.a ENSGT00940000154550.a.f ENSGT00390000004660.C.a.a.b ENSGT00950000182984.a Hystricomorpha_a ANCESTRAL SPECIES 30 ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT01050000244950.a.a.b ENSGT00640000091497.b ENSGT00940000158416 ENSGT01050000244879.b.a.b.b ENSGT00530000063353.a.b.a ENSGT00940000160831 ENSGT00940000157334 ENSGT00940000156535 ENSGT00940000162914 ENSGT00390000003223 ENSGT00390000015655.b ENSGT00620000087993.a.a ENSGT00390000002403 ENSGT01090000260080.b.a Hystricomorpha_b ANCESTRAL SPECIES 29 ENSGT00390000008232 #22 ENSGT00500000044869.a.a #23 ENSGT01050000244950.a.a.b ENSGT00940000158416 ENSGT01050000244879.b.a.b.b ENSGT00530000063353.a.b.a ENSGT00940000160831 ENSGT00940000157334 ENSGT00940000156535 ENSGT00390000003223 ENSGT00390000015655.b ENSGT00620000087993.a.a ENSGT00390000002403 ENSGT01090000260080.b.a ENSGT00390000004692.d.b ENSGT00530000063669.b Long-tailed chinchilla MODERN SPECIES 143 ZUP1 (ENSCLAG00000007886) #22 RSPH4A (ENSCLAG00000009580) #23 KPNA5 (ENSCLAG00000010089) GPRC6A (ENSCLAG00000007059) RFX6 (ENSCLAG00000008090) ROS1 (ENSCLAG00000007326) ENSCLAG00000007845 GOPC (ENSCLAG00000008237) NUS1 (ENSCLAG00000010652) SLC35F1 (ENSCLAG00000008410) CEP85L (ENSCLAG00000010088) PLN (ENSCLAG00000007403) MCM9 (ENSCLAG00000009689) ASF1A (ENSCLAG00000013483) FAM184A (ENSCLAG00000006832) MAN1A1 (ENSCLAG00000007613) Degu MODERN SPECIES 75 ZUP1 (ENSODEG00000004926) #22 RSPH4A (ENSODEG00000005270) #23 ENSODEG00000019159 RFX6 (ENSODEG00000006706) VGLL2 (ENSODEG00000005506) ROS1 (ENSODEG00000006047) ENSODEG00000004793 GOPC (ENSODEG00000005332) NUS1 (ENSODEG00000005194) ENSODEG00000019196 SLC35F1 (ENSODEG00000005040) CEP85L (ENSODEG00000005733) PLN (ENSODEG00000019260) MCM9 (ENSODEG00000005446) ENSODEG00000005478 FAM184A (ENSODEG00000004943) Guinea pig MODERN SPECIES 1 FZD3 (ENSCPOG00000009989) FBXO16 (ENSCPOG00000019834) ENSCPOG00000034090 AGPAT5 (ENSCPOG00000006565) MCPH1 (ENSCPOG00000015508) ANGPT2 (ENSCPOG00000030082) CSMD1 (ENSCPOG00000015501) MYOM2 (ENSCPOG00000002402) KBTBD11 (ENSCPOG00000026453) ARHGEF10 (ENSCPOG00000022520) CLN8 (ENSCPOG00000035105) DLGAP2 (ENSCPOG00000011579) ENSCPOG00000013031 TDRP (ENSCPOG00000035181) FBXO25 (ENSCPOG00000008110) ZUP1 (ENSCPOG00000000534) #22 RSPH4A (ENSCPOG00000000533) #23 KPNA5 (ENSCPOG00000035973) FAM162B (ENSCPOG00000006389) RFX6 (ENSCPOG00000015023) VGLL2 (ENSCPOG00000021559) ENSCPOG00000012998 DCBLD1 (ENSCPOG00000002737) GOPC (ENSCPOG00000010125) ENSCPOG00000027426 ENSCPOG00000031032 NUS1 (ENSCPOG00000039822) SLC35F1 (ENSCPOG00000029995) ENSCPOG00000024368 TPD52L1 (ENSCPOG00000013150) HDDC2 (ENSCPOG00000013151) Naked mole-rat female MODERN SPECIES 30 ENSHGLG00000000614 ENSHGLG00000042162 ENSHGLG00000000399 ENSHGLG00000009321 ENSHGLG00000009379 ENSHGLG00000048422 ENSHGLG00000004775 ENSHGLG00000036302 ENSHGLG00000036746 ENSHGLG00000013205 VGLL2 (ENSHGLG00000048393) RFX6 (ENSHGLG00000019573) GPRC6A (ENSHGLG00000036750) ENSHGLG00000008946 KPNA5 (ENSHGLG00000007645) ENSHGLG00000009896 #22 ENSHGLG00000002525 #23 ENSHGLG00000049438 ENSHGLG00000035661 ENSHGLG00000050402 ENSHGLG00000005874 ENSHGLG00000016052 ENSHGLG00000035693 ENSHGLG00000032597 ABHD16A (ENSHGLG00000011099) CSNK2B (ENSHGLG00000011657) GPANK1 (ENSHGLG00000046532) APOM (ENSHGLG00000012211) C6orf47 (ENSHGLG00000048233) BAG6 (ENSHGLG00000012423) ENSHGLG00000032997