Eutheria	ANCESTRAL SPECIES	9	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725	ENSGT00900000143015
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00390000004692.d.b	ENSGT00940000169249	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00960000188119	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000156987 #36
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00390000004692.d.b	ENSGT00940000169249	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00960000188119	ENSGT00940000163953	ENSGT00940000155676 #34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36
Primates	ANCESTRAL SPECIES	5	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000156987 #36	ENSGT00940000158991
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725	ENSGT00900000143015
Simiiformes	ANCESTRAL SPECIES	5	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000155676.q ##34	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00910000147939
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00910000147104	ENSGT00390000015655.b #10	ENSGT00390000003223.u #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00910000147939	ENSGT00940000155725
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00910000147104	ENSGT01030000237275	ENSGT00390000015655.b #10	ENSGT00390000003223.u #11	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00910000147939	ENSGT00940000155725
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00910000147104	ENSGT01030000237275	ENSGT00390000015655.b #10	ENSGT00390000003223.u #11	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00910000147939	ENSGT00940000155725
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00910000147104	ENSGT01030000237275	ENSGT00390000015655.b #10	ENSGT00390000003223.u #11	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00910000147939	ENSGT00940000155725
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00530000063669.b	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223.u #11	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00860000136122	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000155676.r #34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00910000147939
Olive baboon	MODERN SPECIES	16	CEP85L (ENSPANG00000007396) #7	PLN (ENSPANG00000003332) #8	ENSPANG00000050580 #9	SLC35F1 (ENSPANG00000018515) #10	NUS1 (ENSPANG00000006888) #11	ENSPANG00000042149 #12	GOPC (ENSPANG00000020085) #13	DCBLD1 (ENSPANG00000017288) #14	ENSPANG00000049743 #15	ROS1 (ENSPANG00000022514) #16	VGLL2 (ENSPANG00000016788) #17	RFX6 (ENSPANG00000008240) #18	GPRC6A (ENSPANG00000024072) #19	FAM162B (ENSPANG00000022513) #20	KPNA5 (ENSPANG00000008670) #21	ZUP1 (ENSPANG00000021725) #22	RSPH4A (ENSPANG00000006886) #23	RWDD1 (ENSPANG00000008148) #24	CALHM4 (ENSPANG00000013290) #25	TRAPPC3L (ENSPANG00000024071) #26	CALHM5 (ENSPANG00000006250) #27	CALHM6 (ENSPANG00000038049) #28	ENSPANG00000044624 #29	DSE (ENSPANG00000000826) #30	ENSPANG00000044294 #31	TSPYL1 (ENSPANG00000007994) #32	TSPYL4 (ENSPANG00000035333) #33	NT5DC1 (ENSPANG00000024103) #34	COL10A1 (ENSPANG00000022055) #35	FRK (ENSPANG00000015735) #36	ENSPANG00000045691 #37
Cercopithecinae_d	ANCESTRAL SPECIES	70	ENSGT00530000063669.b	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223.u #11	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00860000136122	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00910000147939	ENSGT00940000155725
Sooty mangabey	MODERN SPECIES	590	ASF1A (ENSCATG00000037391)	MCM9 (ENSCATG00000039701)	PLN (ENSCATG00000011577) #8	CEP85L (ENSCATG00000040491) #7	SLC35F1 (ENSCATG00000039775) #10	NUS1 (ENSCATG00000039106) #11	GOPC (ENSCATG00000037476) #13	DCBLD1 (ENSCATG00000033783) #14	ENSCATG00000022159 ##15	ROS1 (ENSCATG00000021312) #16	VGLL2 (ENSCATG00000038510) #17	RFX6 (ENSCATG00000034545) #18	GPRC6A (ENSCATG00000038791) #19	FAM162B (ENSCATG00000031733) #20	KPNA5 (ENSCATG00000034707) #21	ZUP1 (ENSCATG00000042362) #22	RSPH4A (ENSCATG00000031193) #23	RWDD1 (ENSCATG00000030010) #24	CALHM4 (ENSCATG00000022187) #25	CALHM5 (ENSCATG00000013734) #27	TRAPPC3L (ENSCATG00000039208) #26	CALHM6 (ENSCATG00000041474) #28	DSE (ENSCATG00000039900) #30	ENSCATG00000043899	TSPYL4 (ENSCATG00000041203) #33	COL10A1 (ENSCATG00000019945) #35	NT5DC1 (ENSCATG00000021794) #34	FRK (ENSCATG00000039585) #36	HS3ST5 (ENSCATG00000028503)	HDAC2 (ENSCATG00000042591)	MARCKS (ENSCATG00000009912)
Drill	MODERN SPECIES	1413				ENSMLEG00000027628	ENSMLEG00000003959	SLC35F1 (ENSMLEG00000012171) #10	NUS1 (ENSMLEG00000035527) #11	GOPC (ENSMLEG00000026392) #13	DCBLD1 (ENSMLEG00000040426) #14	ROS1 (ENSMLEG00000029082) #16	ENSMLEG00000030294 #17	RFX6 (ENSMLEG00000033029) #18	GPRC6A (ENSMLEG00000033168) #19	FAM162B (ENSMLEG00000039589) #20	KPNA5 (ENSMLEG00000041216) #21	ZUP1 (ENSMLEG00000033401) #22	RSPH4A (ENSMLEG00000000631) #23	RWDD1 (ENSMLEG00000011284) #24	CALHM4 (ENSMLEG00000032140) #25	CALHM5 (ENSMLEG00000035316) #27	TRAPPC3L (ENSMLEG00000028506) #26	CALHM6 (ENSMLEG00000041324) #28	DSE (ENSMLEG00000028071) #30	ENSMLEG00000032841	TSPYL4 (ENSMLEG00000036698) #33	NT5DC1 (ENSMLEG00000035573) #34
Macaca	ANCESTRAL SPECIES	9	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00910000147104	ENSGT00390000015655.b #10	ENSGT00390000003223.u #11	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725	ENSGT00900000143015
Pig-tailed macaque	MODERN SPECIES	342	ASF1A (ENSMNEG00000032180)	MCM9 (ENSMNEG00000035479)	PLN (ENSMNEG00000004622) #8	CEP85L (ENSMNEG00000038639) #7	ENSMNEG00000024765	SLC35F1 (ENSMNEG00000032478) #10	NUS1 (ENSMNEG00000013910) #11	GOPC (ENSMNEG00000041231) #13	DCBLD1 (ENSMNEG00000045089) #14	ROS1 (ENSMNEG00000044781) #16	VGLL2 (ENSMNEG00000034485) #17	RFX6 (ENSMNEG00000037412) #18	GPRC6A (ENSMNEG00000035336) #19	FAM162B (ENSMNEG00000032267) #20	KPNA5 (ENSMNEG00000033544) #21	ZUP1 (ENSMNEG00000031978) #22	RSPH4A (ENSMNEG00000038377) #23	RWDD1 (ENSMNEG00000045094) #24	CALHM4 (ENSMNEG00000029150) #25	CALHM5 (ENSMNEG00000044741) #27	TRAPPC3L (ENSMNEG00000045331) #26	CALHM6 (ENSMNEG00000044903) #28	DSE (ENSMNEG00000028181) #30	ENSMNEG00000031556	TSPYL4 (ENSMNEG00000028445) #33	COL10A1 (ENSMNEG00000021680) #35	NT5DC1 (ENSMNEG00000029093) #34	FRK (ENSMNEG00000042618) #36
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223.u #11	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725	ENSGT00900000143015
Rhesus	MODERN SPECIES	14	FAM184A (ENSMMUG00000013302)	ASF1A (ENSMMUG00000008526)	MCM9 (ENSMMUG00000008525)	ENSMMUG00000055852	CEP85L (ENSMMUG00000022184) #7	SLC35F1 (ENSMMUG00000022354) #10	ENSMMUG00000053187	NUS1 (ENSMMUG00000059327) #11	DCBLD1 (ENSMMUG00000017558) #14	ROS1 (ENSMMUG00000023738) #16	VGLL2 (ENSMMUG00000023737) #17	RFX6 (ENSMMUG00000017189) #18	GPRC6A (ENSMMUG00000003072) #19	FAM162B (ENSMMUG00000050688) #20	KPNA5 (ENSMMUG00000048955) #21	ZUP1 (ENSMMUG00000001806) #22	RSPH4A (ENSMMUG00000001805) #23	RWDD1 (ENSMMUG00000007415) #24	CALHM4 (ENSMMUG00000007414) #25	CALHM5 (ENSMMUG00000007412) #27	TRAPPC3L (ENSMMUG00000007413) #26	DSE (ENSMMUG00000007409) #30	TSPYL1 (ENSMMUG00000061148) #32	ENSMMUG00000054037	TSPYL4 (ENSMMUG00000014643) #33	COL10A1 (ENSMMUG00000063074) #35	NT5DC1 (ENSMMUG00000014638) #34	FRK (ENSMMUG00000014635) #36	ENSMMUG00000057271	HS3ST5 (ENSMMUG00000050295)	HDAC2 (ENSMMUG00000008937)
Crab-eating macaque	MODERN SPECIES	14	FAM184A (ENSMFAG00000033715)	ASF1A (ENSMFAG00000035748)	MCM9 (ENSMFAG00000002788)	CEP85L (ENSMFAG00000000904) #7	SLC35F1 (ENSMFAG00000043289) #10	NUS1 (ENSMFAG00000051605) #11	ENSMFAG00000063596	GOPC (ENSMFAG00000032714) #13	DCBLD1 (ENSMFAG00000033065) #14	ROS1 (ENSMFAG00000001072) #16	ENSMFAG00000039023 #17	RFX6 (ENSMFAG00000000913) #18	GPRC6A (ENSMFAG00000037810) #19	FAM162B (ENSMFAG00000050195) #20	KPNA5 (ENSMFAG00000038991) #21	ZUP1 (ENSMFAG00000001086) #22	RSPH4A (ENSMFAG00000038872) #23	RWDD1 (ENSMFAG00000042598) #24	ENSMFAG00000033309 #25	CALHM5 (ENSMFAG00000052041) #27	TRAPPC3L (ENSMFAG00000055248) #26	CALHM6 (ENSMFAG00000041853) #28	DSE (ENSMFAG00000033289) #30	COL10A1 (ENSMFAG00000038014) #35	NT5DC1 (ENSMFAG00000038038) #34	FRK (ENSMFAG00000000665) #36	ENSMFAG00000047737	ENSMFAG00000063529 ##12	HS3ST5 (ENSMFAG00000061930)	HDAC2 (ENSMFAG00000040542)	ENSMFAG00000052224
Vervet Monkey	MODERN SPECIES	4	FAM184A (ENSCSAG00000016090)	MCM9 (ENSCSAG00000016078)	ASF1A (ENSCSAG00000016075)	CEP85L (ENSCSAG00000016067) #7	PLN (ENSCSAG00000018971) #8	SLC35F1 (ENSCSAG00000016059) #10	NUS1 (ENSCSAG00000016053) #11	GOPC (ENSCSAG00000016048) #13	DCBLD1 (ENSCSAG00000016039) #14	ROS1 (ENSCSAG00000015976) #16	VGLL2 (ENSCSAG00000015869) #17	RFX6 (ENSCSAG00000015856) #18	GPRC6A (ENSCSAG00000015844) #19	FAM162B (ENSCSAG00000015801) #20	KPNA5 (ENSCSAG00000015794) #21	ZUP1 (ENSCSAG00000015785) #22	RSPH4A (ENSCSAG00000015777) #23	RWDD1 (ENSCSAG00000015772) #24	CALHM4 (ENSCSAG00000015763) #25	TRAPPC3L (ENSCSAG00000015735) #26	CALHM5 (ENSCSAG00000015732) #27	CALHM6 (ENSCSAG00000015726) #28	DSE (ENSCSAG00000015723) #30	TSPYL1 (ENSCSAG00000018972) #32	TSPYL4 (ENSCSAG00000018973) #33	NT5DC1 (ENSCSAG00000015718) #34	ENSCSAG00000015707	COL10A1 (ENSCSAG00000015703) #35	FRK (ENSCSAG00000015700) #36	HS3ST5 (ENSCSAG00000015695)	HDAC2 (ENSCSAG00000015692)
Rhinopithecus	ANCESTRAL SPECIES	472												ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28
Black snub-nosed monkey	MODERN SPECIES	1771												RFX6 (ENSRBIG00000044389) #18	GPRC6A (ENSRBIG00000029856) #19	FAM162B (ENSRBIG00000032712) #20	KPNA5 (ENSRBIG00000029401) #21	ZUP1 (ENSRBIG00000042607) #22	RSPH4A (ENSRBIG00000033414) #23	ENSRBIG00000023199 #24	CALHM4 (ENSRBIG00000032541) #25	TRAPPC3L (ENSRBIG00000028722) #26	CALHM5 (ENSRBIG00000027627) #27	CALHM6 (ENSRBIG00000007538) #28	ENSRBIG00000001662	DSE (ENSRBIG00000035087) #30
Golden snub-nosed monkey	MODERN SPECIES	1726												RFX6 (ENSRROG00000042517) #18	GPRC6A (ENSRROG00000029975) #19	FAM162B (ENSRROG00000002813) #20	KPNA5 (ENSRROG00000007638) #21	ZUP1 (ENSRROG00000001608) #22	RSPH4A (ENSRROG00000034483) #23	RWDD1 (ENSRROG00000034466) #24	CALHM4 (ENSRROG00000030193) #25	CALHM5 (ENSRROG00000028944) #27	TRAPPC3L (ENSRROG00000036813) #26	CALHM6 (ENSRROG00000024470) #28	ENSRROG00000022531	DSE (ENSRROG00000033698) #30
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00910000147104	ENSGT00390000015655.b #10	ENSGT00390000003223.u #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725	ENSGT00730000111419
Hominidae	ANCESTRAL SPECIES	5	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223.u #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00910000148903	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223.u #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00910000148903	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00390000013354.d.a.a.b	ENSGT00940000156987 #36	ENSGT00940000158991
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223.u #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00910000148903	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00390000013354.d.a.a.b	ENSGT00940000156987 #36	ENSGT00940000158991
Pan	ANCESTRAL SPECIES	5	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223.u.a #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.gb #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00910000148903	ENSGT00940000154317.a.b #35	ENSGT00940000155676.r #34	ENSGT00390000013354.d.a.a.b	ENSGT00940000156987 #36	ENSGT00940000158991
Chimpanzee	MODERN SPECIES	19	ASF1A (ENSPTRG00000018554)	MCM9 (ENSPTRG00000018553)	PLN (ENSPTRG00000042771) #8	CEP85L (ENSPTRG00000018549) #7	SLC35F1 (ENSPTRG00000018548) #10	ENSPTRG00000018547 #11	ENSPTRG00000044107	GOPC (ENSPTRG00000018546) #13	DCBLD1 (ENSPTRG00000018545) #14	ROS1 (ENSPTRG00000018544) #16	VGLL2 (ENSPTRG00000018542) #17	RFX6 (ENSPTRG00000018540) #18	GPRC6A (ENSPTRG00000018539) #19	FAM162B (ENSPTRG00000018538) #20	KPNA5 (ENSPTRG00000018537) #21	ZUP1 (ENSPTRG00000018536) #22	RSPH4A (ENSPTRG00000018535) #23	RWDD1 (ENSPTRG00000018534) #24	CALHM4 (ENSPTRG00000018532) #25	CALHM5 (ENSPTRG00000048761) #27	CALHM6 (ENSPTRG00000018530) #28	TRAPPC3L (ENSPTRG00000050736) #26	DSE (ENSPTRG00000018529) #30	TSPYL1 (ENSPTRG00000018528) #32	ENSPTRG00000051033	TSPYL4 (ENSPTRG00000023905) #33	ENSPTRG00000048668	COL10A1 (ENSPTRG00000018524) #35	NT5DC1 (ENSPTRG00000018523) #34	ENSPTRG00000045932	FRK (ENSPTRG00000018521) #36
Bonobo	MODERN SPECIES	19	FAM184A (ENSPPAG00000030693)	ASF1A (ENSPPAG00000039518)	MCM9 (ENSPPAG00000027319)	PLN (ENSPPAG00000019702) #8	CEP85L (ENSPPAG00000031277) #7	SLC35F1 (ENSPPAG00000027433) #10	ENSPPAG00000017927 #11	GOPC (ENSPPAG00000042271) #13	DCBLD1 (ENSPPAG00000030913) #14	ROS1 (ENSPPAG00000040274) #16	VGLL2 (ENSPPAG00000043248) #17	RFX6 (ENSPPAG00000010113) #18	GPRC6A (ENSPPAG00000032903) #19	FAM162B (ENSPPAG00000042060) #20	KPNA5 (ENSPPAG00000033134) #21	ZUP1 (ENSPPAG00000026765) #22	RSPH4A (ENSPPAG00000039243) #23	RWDD1 (ENSPPAG00000035047) #24	ENSPPAG00000019471 #25	CALHM5 (ENSPPAG00000039792) #27	TRAPPC3L (ENSPPAG00000043671) #26	CALHM6 (ENSPPAG00000040382) #28	DSE (ENSPPAG00000039304) #30	TSPYL1 (ENSPPAG00000010073) #32	ENSPPAG00000037203	TSPYL4 (ENSPPAG00000025665) #33	ENSPPAG00000034902 #34	COL10A1 (ENSPPAG00000029466) #35	ENSPPAG00000008350 #34	ENSPPAG00000009764	FRK (ENSPPAG00000037662) #36
Human	MODERN SPECIES	18	ASF1A (ENSG00000111875)	MCM9 (ENSG00000111877)	PLN (ENSG00000198523) #8	CEP85L (ENSG00000111860) #7	SLC35F1 (ENSG00000196376) #10	NUS1 (ENSG00000153989) #11	GOPC (ENSG00000047932) #13	DCBLD1 (ENSG00000164465) #14	ENSG00000282218	ROS1 (ENSG00000047936) #16	VGLL2 (ENSG00000170162) #17	RFX6 (ENSG00000185002) #18	GPRC6A (ENSG00000173612) #19	FAM162B (ENSG00000183807) #20	KPNA5 (ENSG00000196911) #21	ZUP1 (ENSG00000153975) #22	RSPH4A (ENSG00000111834) #23	RWDD1 (ENSG00000111832) #24	CALHM4 (ENSG00000164451) #25	CALHM5 (ENSG00000178033) #27	TRAPPC3L (ENSG00000173626) #26	CALHM6 (ENSG00000188820) #28	ENSG00000285446	TSPYL1 (ENSG00000189241) #32	DSE (ENSG00000111817) #30	TSPYL4 (ENSG00000187189) #33	COL10A1 (ENSG00000123500) #35	NT5DC1 (ENSG00000178425) #34	FRK (ENSG00000111816) #36	HS3ST5 (ENSG00000249853)	HDAC2 (ENSG00000196591)
Gorilla	MODERN SPECIES	19	FAM184A (ENSGGOG00000010977)	ASF1A (ENSGGOG00000010053)	MCM9 (ENSGGOG00000004084)	PLN (ENSGGOG00000037676) #8	CEP85L (ENSGGOG00000003828) #7	SLC35F1 (ENSGGOG00000014788) #10	NUS1 (ENSGGOG00000022321) #11	GOPC (ENSGGOG00000013555) #13	DCBLD1 (ENSGGOG00000001188) #14	ROS1 (ENSGGOG00000014048) #16	VGLL2 (ENSGGOG00000014045) #17	RFX6 (ENSGGOG00000006982) #18	GPRC6A (ENSGGOG00000001199) #19	FAM162B (ENSGGOG00000002045) #20	KPNA5 (ENSGGOG00000011906) #21	ZUP1 (ENSGGOG00000016798) #22	ENSGGOG00000016793 #23	RWDD1 (ENSGGOG00000026889) #24	CALHM4 (ENSGGOG00000017144) #25	CALHM5 (ENSGGOG00000039336) #27	TRAPPC3L (ENSGGOG00000036719) #26	CALHM6 (ENSGGOG00000001375) #28	DSE (ENSGGOG00000026746) #30	TSPYL1 (ENSGGOG00000016740) #32	ENSGGOG00000024360	TSPYL4 (ENSGGOG00000025875) #33	ENSGGOG00000037308	COL10A1 (ENSGGOG00000023907) #35	NT5DC1 (ENSGGOG00000007465) #34	ENSGGOG00000039649	FRK (ENSGGOG00000034876) #36
Orangutan	MODERN SPECIES	19	FAM184A (ENSPPYG00000016971)	ASF1A (ENSPPYG00000016970)	MCM9 (ENSPPYG00000016969)	PLN (ENSPPYG00000018685) #8	CEP85L (ENSPPYG00000016967) #7	SLC35F1 (ENSPPYG00000016966) #10	NUS1 (ENSPPYG00000025886) #11	GOPC (ENSPPYG00000016964) #13	DCBLD1 (ENSPPYG00000016963) #14	ROS1 (ENSPPYG00000016962) #16	VGLL2 (ENSPPYG00000016961) #17	RFX6 (ENSPPYG00000016960) #18	GPRC6A (ENSPPYG00000016959) #19	FAM162B (ENSPPYG00000016958) #20	KPNA5 (ENSPPYG00000016957) #21	ZUP1 (ENSPPYG00000016956) #22	RSPH4A (ENSPPYG00000016954) #23	RWDD1 (ENSPPYG00000016953) #24	CALHM4 (ENSPPYG00000016952) #25	CALHM5 (ENSPPYG00000016951) #27	TRAPPC3L (ENSPPYG00000016950) #26	CALHM6 (ENSPPYG00000016949) #28	DSE (ENSPPYG00000016948) #30	TSPYL1 (ENSPPYG00000035346) #32	ENSPPYG00000035461	TSPYL4 (ENSPPYG00000040233) #33	ENSPPYG00000035177	COL10A1 (ENSPPYG00000016944) #35	NT5DC1 (ENSPPYG00000016943) #34	FRK (ENSPPYG00000016942) #36	HS3ST5 (ENSPPYG00000039787)
Gibbon	MODERN SPECIES	18	ENSNLEG00000013543	ASF1A (ENSNLEG00000013535)	PLN (ENSNLEG00000029331) #8	CEP85L (ENSNLEG00000013486) #7	ENSNLEG00000028147	SLC35F1 (ENSNLEG00000013471) #10	NUS1 (ENSNLEG00000029327) #11	GOPC (ENSNLEG00000013426) #13	DCBLD1 (ENSNLEG00000013410) #14	ROS1 (ENSNLEG00000013311) #16	VGLL2 (ENSNLEG00000013293) #17	RFX6 (ENSNLEG00000013258) #18	ENSNLEG00000013257 #19	ENSNLEG00000013253 #20	KPNA5 (ENSNLEG00000013209) #21	ZUP1 (ENSNLEG00000013173) #22	RSPH4A (ENSNLEG00000013151) #23	RWDD1 (ENSNLEG00000013133) #24	CALHM4 (ENSNLEG00000028191) #25	CALHM5 (ENSNLEG00000013129) #27	TRAPPC3L (ENSNLEG00000013121) #26	CALHM6 (ENSNLEG00000013120) #28	ENSNLEG00000032216	DSE (ENSNLEG00000013106) #30	TSPYL1 (ENSNLEG00000019148) #32	ENSNLEG00000018478	TSPYL4 (ENSNLEG00000013105) #33	COL10A1 (ENSNLEG00000013102) #35	NT5DC1 (ENSNLEG00000013080) #34	FRK (ENSNLEG00000013075) #36	HS3ST5 (ENSNLEG00000013070)
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.eb #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000155676.q ##34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00910000147939	ENSGT00940000155725	ENSGT00900000143015
Cebidae	ANCESTRAL SPECIES	5	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.eb #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000155676.q ##34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725	ENSGT00900000143015	ENSGT00940000159970
Cebidae_a	ANCESTRAL SPECIES	26	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168.eb #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000170327	ENSGT00940000155676.q ##34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725	ENSGT00730000111419
Capuchin	MODERN SPECIES	11	ANXA11 (ENSCCAG00000037639)	MAT1A (ENSCCAG00000021786)	DYDC1 (ENSCCAG00000026278)	DYDC2 (ENSCCAG00000028493)	NUS1 (ENSCCAG00000020694) #11	ENSCCAG00000024292	ENSCCAG00000028924 #13	DCBLD1 (ENSCCAG00000025349) #14	ENSCCAG00000027081	ROS1 (ENSCCAG00000033956) #16	VGLL2 (ENSCCAG00000028036) #17	RFX6 (ENSCCAG00000019715) #18	GPRC6A (ENSCCAG00000030003) #19	FAM162B (ENSCCAG00000031118) #20	KPNA5 (ENSCCAG00000022746) #21	ZUP1 (ENSCCAG00000025061) #22	RSPH4A (ENSCCAG00000007275) #23	RWDD1 (ENSCCAG00000027935) #24	CALHM4 (ENSCCAG00000029702) #25	TRAPPC3L (ENSCCAG00000035786) #26	CALHM5 (ENSCCAG00000021913) #27	CALHM6 (ENSCCAG00000029008) #28	DSE (ENSCCAG00000030876) #30	EIF3H (ENSCCAG00000033678)	NT5DC1 (ENSCCAG00000024638) ##34	COL10A1 (ENSCCAG00000032758) #35	FRK (ENSCCAG00000025087) #36	ENSCCAG00000001468
Bolivian squirrel monkey	MODERN SPECIES	145	PLN (ENSSBOG00000036386) #8	SLC35F1 (ENSSBOG00000028196) #10	ENSSBOG00000021486	ENSSBOG00000022939	NUS1 (ENSSBOG00000024151) #11	ENSSBOG00000028014	GOPC (ENSSBOG00000021757) #13	DCBLD1 (ENSSBOG00000023384) #14	ROS1 (ENSSBOG00000026173) #16	ENSSBOG00000027243 #17	RFX6 (ENSSBOG00000029327) #18	ENSSBOG00000031250	GPRC6A (ENSSBOG00000034356) #19	FAM162B (ENSSBOG00000013087) #20	KPNA5 (ENSSBOG00000020656) #21	ZUP1 (ENSSBOG00000023075) #22	RSPH4A (ENSSBOG00000027685) #23	RWDD1 (ENSSBOG00000029590) #24	CALHM4 (ENSSBOG00000006032) #25	TRAPPC3L (ENSSBOG00000010873) #26	CALHM5 (ENSSBOG00000014712) #27	CALHM6 (ENSSBOG00000018753) #28	DSE (ENSSBOG00000019590) #30	ENSSBOG00000020332	ENSSBOG00000020743	ENSSBOG00000022050 ##34	COL10A1 (ENSSBOG00000022558) #35	FRK (ENSSBOG00000024353) #36	ENSSBOG00000025026	HS3ST5 (ENSSBOG00000025511)	ENSSBOG00000026123
Marmoset	MODERN SPECIES	16	MCM9 (ENSCJAG00000004148)	PLN (ENSCJAG00000053732) #8	CEP85L (ENSCJAG00000004178) #7	SLC35F1 (ENSCJAG00000004231) #10	ENSCJAG00000033961 #11	GOPC (ENSCJAG00000004242) #13	ENSCJAG00000004257 ##12	ENSCJAG00000070188 ##12	ROS1 (ENSCJAG00000004286) #16	VGLL2 (ENSCJAG00000004345) #17	RFX6 (ENSCJAG00000004349) #18	GPRC6A (ENSCJAG00000004373) #19	FAM162B (ENSCJAG00000055731) #20	ENSCJAG00000072141	KPNA5 (ENSCJAG00000004394) #21	ZUP1 (ENSCJAG00000004437) #22	RSPH4A (ENSCJAG00000004455) #23	ENSCJAG00000004474 #24	CALHM4 (ENSCJAG00000004499) #25	CALHM5 (ENSCJAG00000059277) #27	TRAPPC3L (ENSCJAG00000004513) #26	CALHM6 (ENSCJAG00000004524) #28	DSE (ENSCJAG00000004530) #30	TSPYL1 (ENSCJAG00000040079) #32	COL10A1 (ENSCJAG00000004589) #35	ENSCJAG00000047367 ##34	TSPYL4 (ENSCJAG00000034803) #33	FRK (ENSCJAG00000004595) #36	ENSCJAG00000067023	HS3ST5 (ENSCJAG00000086455)	HDAC2 (ENSCJAG00000004635)
Mas night monkey	MODERN SPECIES	1107					NUS1 (ENSANAG00000029458) #11	ENSANAG00000031313	GOPC (ENSANAG00000032043) #13	DCBLD1 (ENSANAG00000036214) #14	ROS1 (ENSANAG00000029743) #16	VGLL2 (ENSANAG00000033765) #17	RFX6 (ENSANAG00000035610) #18	ENSANAG00000020549	GPRC6A (ENSANAG00000028734) #19	FAM162B (ENSANAG00000023673) #20	KPNA5 (ENSANAG00000009920) #21	ZUP1 (ENSANAG00000021756) #22	RSPH4A (ENSANAG00000020519) #23	RWDD1 (ENSANAG00000030086) #24	CALHM4 (ENSANAG00000022923) #25	TRAPPC3L (ENSANAG00000026394) #26	ENSANAG00000030183	CALHM5 (ENSANAG00000001421) #27	CALHM6 (ENSANAG00000032722) #28	DSE (ENSANAG00000038310) #30	ENSANAG00000036796	TSPYL1 (ENSANAG00000022346) #32	ENSANAG00000031391 ##34	COL10A1 (ENSANAG00000028479) #35	FRK (ENSANAG00000035872) #36	HS3ST5 (ENSANAG00000026473)	ENSANAG00000018971
Tarsier	MODERN SPECIES	6130													GPRC6A (ENSTSYG00000013697) #19	FAM162B (ENSTSYG00000025791) #20	KPNA5 (ENSTSYG00000026661) #21	ZUP1 (ENSTSYG00000000103) #22	RSPH4A (ENSTSYG00000000102) #23
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000156987 #36	ENSGT00940000158991
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00530000063669.b	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725
Mouse lemur	MODERN SPECIES	28	ASF1A (ENSMICG00000048055)	MCM9 (ENSMICG00000016579)	CEP85L (ENSMICG00000014569) #7	SLC35F1 (ENSMICG00000014553) #10	NUS1 (ENSMICG00000045489) #11	ENSMICG00000027119	GOPC (ENSMICG00000037737) #13	DCBLD1 (ENSMICG00000007818) #14	ROS1 (ENSMICG00000007792) #16	VGLL2 (ENSMICG00000007779) #17	RFX6 (ENSMICG00000044294) #18	ENSMICG00000038117	GPRC6A (ENSMICG00000047395) #19	FAM162B (ENSMICG00000032976) #20	KPNA5 (ENSMICG00000037900) #21	ZUP1 (ENSMICG00000013671) #22	RSPH4A (ENSMICG00000032048) #23	ENSMICG00000044337	ENSMICG00000032724	ENSMICG00000048082	ENSMICG00000046073	HACE1 (ENSMICG00000002280)	LIN28B (ENSMICG00000047923)	BVES (ENSMICG00000041560)	POPDC3 (ENSMICG00000045084)	PREP (ENSMICG00000000906)	PRDM1 (ENSMICG00000010329)	ATG5 (ENSMICG00000010334)	CRYBG1 (ENSMICG00000030885)	RTN4IP1 (ENSMICG00000015741)	QRSL1 (ENSMICG00000015754)
Lemuriformes_a	ANCESTRAL SPECIES	63	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725
Coquerels sifaka	MODERN SPECIES	445						NUS1 (ENSPCOG00000020589) #11	ENSPCOG00000019234	GOPC (ENSPCOG00000028025) #13	DCBLD1 (ENSPCOG00000023692) #14	ROS1 (ENSPCOG00000018293) #16	VGLL2 (ENSPCOG00000017437) #17	RFX6 (ENSPCOG00000024904) #18	ENSPCOG00000024330	GPRC6A (ENSPCOG00000013226) #19	KPNA5 (ENSPCOG00000016943) #21	ZUP1 (ENSPCOG00000021558) #22	RSPH4A (ENSPCOG00000006824) #23	CALHM4 (ENSPCOG00000027369) #25	TRAPPC3L (ENSPCOG00000018449) #26	CALHM5 (ENSPCOG00000020027) #27	CALHM6 (ENSPCOG00000015099) #28	DSE (ENSPCOG00000017942) #30	TSPYL1 (ENSPCOG00000020616) #32	NT5DC1 (ENSPCOG00000019513) #34	ENSPCOG00000017572	FRK (ENSPCOG00000016754) #36
Greater bamboo lemur	MODERN SPECIES	117												RFX6 (ENSPSMG00000025293) #18	GPRC6A (ENSPSMG00000025285) #19	FAM162B (ENSPSMG00000025283) #20	KPNA5 (ENSPSMG00000025274) #21	ZUP1 (ENSPSMG00000025258) #22	RSPH4A (ENSPSMG00000025239) #23	ENSPSMG00000025223	ENSPSMG00000025216	RWDD1 (ENSPSMG00000025211) #24	CALHM4 (ENSPSMG00000025205) #25	CALHM5 (ENSPSMG00000025204) #27	TRAPPC3L (ENSPSMG00000025203) #26	CALHM6 (ENSPSMG00000025201) #28	DSE (ENSPSMG00000025197) #30	ENSPSMG00000025178	ENSPSMG00000025176 #32	TSPYL4 (ENSPSMG00000025171) #33	ENSPSMG00000025170	NT5DC1 (ENSPSMG00000025168) #34	FRK (ENSPSMG00000025161) #36
Bushbaby	MODERN SPECIES	117	ASF1A (ENSOGAG00000034346)	MCM9 (ENSOGAG00000005084)	PLN (ENSOGAG00000009077) #8	CEP85L (ENSOGAG00000009073) #7	ENSOGAG00000029442	SLC35F1 (ENSOGAG00000001897) #10	ENSOGAG00000001894 #11	ENSOGAG00000025632	GOPC (ENSOGAG00000014241) #13	ROS1 (ENSOGAG00000005027) #16	VGLL2 (ENSOGAG00000031570) #17	RFX6 (ENSOGAG00000011937) #18	GPRC6A (ENSOGAG00000011933) #19	FAM162B (ENSOGAG00000011931) #20	KPNA5 (ENSOGAG00000011924) #21	ZUP1 (ENSOGAG00000011921) #22	RSPH4A (ENSOGAG00000011917) #23	ENSOGAG00000030595	ENSOGAG00000025916	RWDD1 (ENSOGAG00000014683) #24	CALHM4 (ENSOGAG00000014682) #25	CALHM5 (ENSOGAG00000014679) #27	TRAPPC3L (ENSOGAG00000014677) #26	CALHM6 (ENSOGAG00000032372) #28	DSE (ENSOGAG00000001191) #30	ENSOGAG00000025070	TSPYL1 (ENSOGAG00000001189) #32	TSPYL4 (ENSOGAG00000031495) #33	COL10A1 (ENSOGAG00000024717) #35	NT5DC1 (ENSOGAG00000009142) #34	FRK (ENSOGAG00000009140) #36
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00960000188119	ENSGT00940000163953	ENSGT00940000155676 #34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36
Tree shrew	MODERN SPECIES	415												RFX6 (ENSTBEG00000011557) #18	GPRC6A (ENSTBEG00000011378) #19	FAM162B (ENSTBEG00000011197) #20	KPNA5 (ENSTBEG00000010796) #21	ZUP1 (ENSTBEG00000010563) #22	RSPH4A (ENSTBEG00000010326) #23
Glires	ANCESTRAL SPECIES	5	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00960000188119	ENSGT00940000163953	ENSGT00940000155676 #34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36
Rodentia	ANCESTRAL SPECIES	6	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000156987 #36	ENSGT00940000158991
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000163953	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000163953	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991
Muroidea	ANCESTRAL SPECIES	22	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000163953	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT00940000154319.u.a	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000163953	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725
Cricetidae	ANCESTRAL SPECIES	11	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT00940000154319.u.a	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000163953	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725
Prairie vole	MODERN SPECIES	358	Pln (ENSMOCG00000007426) #8	Cep85l (ENSMOCG00000006570) #7	Slc35f1 (ENSMOCG00000018060) #10	Nus1 (ENSMOCG00000016436) #11	Nepn (ENSMOCG00000015809)	Gopc (ENSMOCG00000020068) #13	Dcbld1 (ENSMOCG00000013753) #14	ENSMOCG00000010376	Ros1 (ENSMOCG00000020353) #16	Vgll2 (ENSMOCG00000001216) #17	ENSMOCG00000004706	Rfx6 (ENSMOCG00000013788) #18	Gprc6a (ENSMOCG00000001619) #19	Fam162b (ENSMOCG00000016808) #20	ENSMOCG00000016429 #21	Zup1 (ENSMOCG00000007844) #22	Rsph4a (ENSMOCG00000015792) #23	ENSMOCG00000012673	ENSMOCG00000021295	ENSMOCG00000019458	Crybg1 (ENSMOCG00000017311)	Rtn4ip1 (ENSMOCG00000022655)	Qrsl1 (ENSMOCG00000015511)	Cd24a (ENSMOCG00000004145)	ENSMOCG00000019641	Mtres1 (ENSMOCG00000016820)	Bend3 (ENSMOCG00000007344)	Pdss2 (ENSMOCG00000002520)	ENSMOCG00000020152	Sobp (ENSMOCG00000019494)	Scml4 (ENSMOCG00000004057)
Northern American deer mouse	MODERN SPECIES	7	Cep85l (ENSPEMG00000008438) #7	Slc35f1 (ENSPEMG00000030425) #10	Nus1 (ENSPEMG00000023792) #11	Nepn (ENSPEMG00000011390)	ENSPEMG00000027015	ENSPEMG00000028213	Gopc (ENSPEMG00000017950) #13	Dcbld1 (ENSPEMG00000023463) #14	Ros1 (ENSPEMG00000018962) #16	Vgll2 (ENSPEMG00000011624) #17	ENSPEMG00000028021	Rfx6 (ENSPEMG00000013570) #18	Gprc6a (ENSPEMG00000021921) #19	Fam162b (ENSPEMG00000022270) #20	ENSPEMG00000021071 #21	Zup1 (ENSPEMG00000019963) #22	Rsph4a (ENSPEMG00000015392) #23	ENSPEMG00000010482	Rwdd1 (ENSPEMG00000000119) #24	Calhm4 (ENSPEMG00000017719) #25	Calhm5 (ENSPEMG00000019478) #27	Trappc3l (ENSPEMG00000019941) #26	Calhm6 (ENSPEMG00000019812) #28	Dse (ENSPEMG00000019781) #30	Tspyl1 (ENSPEMG00000019621) #32	Tspyl4 (ENSPEMG00000031222) #33	Col10a1 (ENSPEMG00000019392)	Nt5dc1 (ENSPEMG00000020069) #34	Frk (ENSPEMG00000027385) #36	ENSPEMG00000027759	Hs3st5 (ENSPEMG00000027903)
Cricetinae	ANCESTRAL SPECIES	7	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT00940000154319.u.a	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000163953	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725
Chinese hamster chok1gshd	MODERN SPECIES	160	ENSCGRG00001014500	Slc35f1 (ENSCGRG00001016195) #10	Nus1 (ENSCGRG00001010462) #11	Nepn (ENSCGRG00001011193)	Gopc (ENSCGRG00001012164) #13	ENSCGRG00001016329	Dcbld1 (ENSCGRG00001014316) #14	Ros1 (ENSCGRG00001019975) #16	ENSCGRG00001008034	Vgll2 (ENSCGRG00001012605) #17	ENSCGRG00001016423	Rfx6 (ENSCGRG00001013519) #18	Gprc6a (ENSCGRG00001019351) #19	Fam162b (ENSCGRG00001013690) #20	ENSCGRG00001017023 #21	Zup1 (ENSCGRG00001019649) #22	Rsph4a (ENSCGRG00001022255) #23	ENSCGRG00001022688	ENSCGRG00001022958	Rwdd1 (ENSCGRG00001000262) #24	Calhm4 (ENSCGRG00001000585) #25	Trappc3l (ENSCGRG00001001357) #26	Calhm5 (ENSCGRG00001015860) #27	Calhm6 (ENSCGRG00001016166) #28	Dse (ENSCGRG00001016755) #30	Tspyl1 (ENSCGRG00001016055) #32	Tspyl4 (ENSCGRG00001015452) #33	Nt5dc1 (ENSCGRG00001019057) #34	Col10a1 (ENSCGRG00001011438)	Frk (ENSCGRG00001012098) #36	ENSCGRG00001014662
Golden Hamster	MODERN SPECIES	655	Mcm9 (ENSMAUG00000015317)	ENSMAUG00000012325	Pln (ENSMAUG00000007750) #8	Cep85l (ENSMAUG00000015193) #7	Slc35f1 (ENSMAUG00000011113) #10	Nus1 (ENSMAUG00000019803) #11	Nepn (ENSMAUG00000018286)	Gopc (ENSMAUG00000007546) #13	Dcbld1 (ENSMAUG00000010738) #14	Ros1 (ENSMAUG00000016942) #16	Vgll2 (ENSMAUG00000019922) #17	ENSMAUG00000007444	Rfx6 (ENSMAUG00000002997) #18	Fam162b (ENSMAUG00000012733) #20	ENSMAUG00000009856 #21	Zup1 (ENSMAUG00000012807) #22	Rsph4a (ENSMAUG00000009247) #23	ENSMAUG00000009333	Rwdd1 (ENSMAUG00000001504) #24	Calhm4 (ENSMAUG00000020546) #25	Calhm5 (ENSMAUG00000014804) #27	Trappc3l (ENSMAUG00000004214) #26	Calhm6 (ENSMAUG00000002308) #28	Dse (ENSMAUG00000020240) #30	Tspyl1 (ENSMAUG00000018330) #32	Tspyl4 (ENSMAUG00000007306) #33	Col10a1 (ENSMAUG00000021181)	Nt5dc1 (ENSMAUG00000018298) #34	Frk (ENSMAUG00000011561) #36	Hs3st5 (ENSMAUG00000011520)	Hdac2 (ENSMAUG00000020410)
Murinae	ANCESTRAL SPECIES	41	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT00940000154319.u.a	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772
Mus	ANCESTRAL SPECIES	15	ENSGT00940000163194	ENSGT00730000111419	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987 #36	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000162991 #33	ENSGT00940000162821 #32	ENSGT00390000006522.b #30	ENSGT01030000234610.a.a #28	ENSGT01030000234610.a.b #27	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT00390000009168 #24	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00940000157632	ENSGT00510000049207	ENSGT00940000160565	ENSGT00730000111285	ENSGT00940000159202	ENSGT00390000009937	ENSGT00940000160636	ENSGT00940000155141	ENSGT00510000047616.b	ENSGT00390000018131	ENSGT00390000010369	ENSGT00940000157815	ENSGT00390000000358
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000163194	ENSGT00730000111419	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987 #36	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000162991 #33	ENSGT00940000162821 #32	ENSGT00390000006522.b #30	ENSGT01030000234610.a.a #28	ENSGT01030000234610.a.b #27	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT00390000009168 #24	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.ab	ENSGT00940000157632	ENSGT00510000049207	ENSGT00940000160565	ENSGT00730000111285	ENSGT00940000159202	ENSGT00390000009937	ENSGT00940000160636	ENSGT00940000155141	ENSGT00510000047616.b	ENSGT00390000018131	ENSGT00390000010369	ENSGT00940000157815	ENSGT00390000000358
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000163194	ENSGT00730000111419	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987 #36	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000162991 #33	ENSGT00940000162821 #32	ENSGT00390000006522.b #30	ENSGT01030000234610.a.a #28	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.b.b #25	ENSGT00390000009168 #24	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.ab	ENSGT00940000156772.`b	ENSGT00940000157632	ENSGT00510000049207	ENSGT00940000160565	ENSGT00730000111285	ENSGT00940000159202	ENSGT00390000009937	ENSGT00940000160636	ENSGT00940000155141	ENSGT00510000047616.b	ENSGT00390000018131	ENSGT00390000010369.m	ENSGT00940000157815
Mouse	MODERN SPECIES	1	Marcks (ENSMUSG00000069662)	Hdac2 (ENSMUSG00000019777)	Hs3st5 (ENSMUSG00000044499)	Amd2 (ENSMUSG00000063953)	Frk (ENSMUSG00000019779) #36	Col10a1 (ENSMUSG00000039462)	Tspyl4 (ENSMUSG00000039485) #33	Nt5dc1 (ENSMUSG00000039480) #34	Tspyl1 (ENSMUSG00000047514) #32	Dse (ENSMUSG00000039497) #30	Calhm6 (ENSMUSG00000046031) #28	Calhm5 (ENSMUSG00000049872) #27	Calhm4 (ENSMUSG00000039508) #25	Trappc3l (ENSMUSG00000071340) #26	Rwdd1 (ENSMUSG00000019782) #24	Zup1 (ENSMUSG00000039531) #22	Rsph4a (ENSMUSG00000039552) #23	Sult3a1 (ENSMUSG00000069668)	Sult3a2 (ENSMUSG00000090298)	Clvs2 (ENSMUSG00000019785)	Trdn (ENSMUSG00000019787)	Nkain2 (ENSMUSG00000069670)	Rnf217 (ENSMUSG00000063760)	Tpd52l1 (ENSMUSG00000000296)	Hddc2 (ENSMUSG00000000295)	Hey2 (ENSMUSG00000019789)	Ncoa7 (ENSMUSG00000039697)	Hint3 (ENSMUSG00000019791)	Trmt11 (ENSMUSG00000019792)	Cenpw (ENSMUSG00000075266)	Rspo3 (ENSMUSG00000019880)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000163194	ENSGT00730000111419	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987 #36	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000162991 #33	ENSGT00940000162821 #32	ENSGT00390000006522.b #30	ENSGT01030000234610.a.a #28	ENSGT01030000234610.a.b #27	ENSGT01030000234610.b.b #25	ENSGT00390000009168 #24	ENSGT00390000003880.b.b #26	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.ab	ENSGT00940000156772.`b	ENSGT00940000157632	ENSGT00510000049207	ENSGT00940000160565	ENSGT00730000111285	ENSGT00940000159202	ENSGT00390000009937	ENSGT00940000160636	ENSGT00940000155141	ENSGT00510000047616.b	ENSGT00390000018131	ENSGT00390000010369.m	ENSGT00940000157815
Steppe mouse	MODERN SPECIES	1833																Zup1 (ENSMSIG00000001266) #22	Rsph4a (ENSMSIG00000001351) #23	Sult3a1 (ENSMSIG00000001379)
spretus	MODERN SPECIES	1	Marcks (MGP_SPRETEiJ_G0016049)	Hdac2 (MGP_SPRETEiJ_G0016048)	Hs3st5 (MGP_SPRETEiJ_G0016047)	Frk (MGP_SPRETEiJ_G0016046) #36	Col10a1 (MGP_SPRETEiJ_G0016045)	Nt5dc1 (MGP_SPRETEiJ_G0016044) #34	Tspyl4 (MGP_SPRETEiJ_G0016043) #33	Tspyl1 (MGP_SPRETEiJ_G0016042) #32	Dse (MGP_SPRETEiJ_G0016041) #30	Calhm6 (MGP_SPRETEiJ_G0016040) #28	Calhm5 (MGP_SPRETEiJ_G0016039) #27	Calhm4 (MGP_SPRETEiJ_G0016038) #25	Trappc3l (MGP_SPRETEiJ_G0016037) #26	Rwdd1 (MGP_SPRETEiJ_G0016036) #24	MGP_SPRETEiJ_G0016035	Zup1 (MGP_SPRETEiJ_G0016034) #22	Rsph4a (MGP_SPRETEiJ_G0016033) #23	Sult3a1 (MGP_SPRETEiJ_G0016032)	MGP_SPRETEiJ_G0016031	Clvs2 (MGP_SPRETEiJ_G0016030)	Trdn (MGP_SPRETEiJ_G0016029)	Nkain2 (MGP_SPRETEiJ_G0016028)	Rnf217 (MGP_SPRETEiJ_G0016027)	Tpd52l1 (MGP_SPRETEiJ_G0016026)	Hddc2 (MGP_SPRETEiJ_G0016025)	Hey2 (MGP_SPRETEiJ_G0016024)	Ncoa7 (MGP_SPRETEiJ_G0016023)	Hint3 (MGP_SPRETEiJ_G0016022)	Trmt11 (MGP_SPRETEiJ_G0016021)	Cenpw (MGP_SPRETEiJ_G0016020)	Rspo3 (MGP_SPRETEiJ_G0016019)
Ryukyu mouse	MODERN SPECIES	1	Marcks (MGP_CAROLIEiJ_G0015240)	Hdac2 (MGP_CAROLIEiJ_G0015239)	Hs3st5 (MGP_CAROLIEiJ_G0015238)	Frk (MGP_CAROLIEiJ_G0015237) #36	Col10a1 (MGP_CAROLIEiJ_G0015236)	Tspyl4 (MGP_CAROLIEiJ_G0015235) #33	Nt5dc1 (MGP_CAROLIEiJ_G0015234) #34	Tspyl1 (MGP_CAROLIEiJ_G0015233) #32	Dse (MGP_CAROLIEiJ_G0015232) #30	Calhm6 (MGP_CAROLIEiJ_G0015231) #28	Calhm5 (MGP_CAROLIEiJ_G0015230) #27	Calhm4 (MGP_CAROLIEiJ_G0015229) #25	Trappc3l (MGP_CAROLIEiJ_G0015228) #26	Rwdd1 (MGP_CAROLIEiJ_G0015227) #24	MGP_CAROLIEiJ_G0015226	Zup1 (MGP_CAROLIEiJ_G0015225) #22	Rsph4a (MGP_CAROLIEiJ_G0015224) #23	MGP_CAROLIEiJ_G0015223	Sult3a1 (MGP_CAROLIEiJ_G0015222)	Clvs2 (MGP_CAROLIEiJ_G0015221)	Trdn (MGP_CAROLIEiJ_G0015220)	Nkain2 (MGP_CAROLIEiJ_G0015219)	Rnf217 (MGP_CAROLIEiJ_G0015218)	Tpd52l1 (MGP_CAROLIEiJ_G0015217)	Hddc2 (MGP_CAROLIEiJ_G0015216)	Hey2 (MGP_CAROLIEiJ_G0015215)	Ncoa7 (MGP_CAROLIEiJ_G0015214)	Hint3 (MGP_CAROLIEiJ_G0015213)	Trmt11 (MGP_CAROLIEiJ_G0015212)	Cenpw (MGP_CAROLIEiJ_G0015211)	Rspo3 (MGP_CAROLIEiJ_G0015210)
Shrew mouse	MODERN SPECIES	22	Marcks (MGP_PahariEiJ_G0030657)	Hdac2 (MGP_PahariEiJ_G0030656)	Hs3st5 (MGP_PahariEiJ_G0030655)	Frk (MGP_PahariEiJ_G0030654) #36	Col10a1 (MGP_PahariEiJ_G0030653)	Tspyl4 (MGP_PahariEiJ_G0030652) #33	Nt5dc1 (MGP_PahariEiJ_G0030651) #34	Tspyl1 (MGP_PahariEiJ_G0030650) #32	Dse (MGP_PahariEiJ_G0030649) #30	MGP_PahariEiJ_G0030648 #28	Calhm5 (MGP_PahariEiJ_G0030647) #27	Calhm4 (MGP_PahariEiJ_G0030646) #25	Trappc3l (MGP_PahariEiJ_G0030645) #26	Rwdd1 (MGP_PahariEiJ_G0030644) #24	MGP_PahariEiJ_G0030643	Zup1 (MGP_PahariEiJ_G0030642) #22	Rsph4a (MGP_PahariEiJ_G0030641) #23	MGP_PahariEiJ_G0030640
Rat	MODERN SPECIES	12	Cep85l (ENSRNOG00000000414) #7	ENSRNOG00000066051	Slc35f1 (ENSRNOG00000000412) #10	Nus1 (ENSRNOG00000000411) #11	Nepn (ENSRNOG00000000410)	ENSRNOG00000070377	Gopc (ENSRNOG00000000408) #13	Dcbld1 (ENSRNOG00000000407) #14	LOC100911055 (ENSRNOG00000033891)	Ros1 (ENSRNOG00000000406) #16	Vgll2 (ENSRNOG00000000405) #17	Rfx6 (ENSRNOG00000027949) #18	ENSRNOG00000070167	Gprc6a (ENSRNOG00000000401) #19	Kpna5 (ENSRNOG00000030109) #21	Zup1 (ENSRNOG00000000398) #22	Rsph4a (ENSRNOG00000049696) #23	Ccar1 (ENSRNOG00000000397)	Stox1 (ENSRNOG00000023712)	Ddx50 (ENSRNOG00000000396)	Ddx21 (ENSRNOG00000043099)	Kifbp (ENSRNOG00000000395)	Srgn (ENSRNOG00000000394)	Vps26a (ENSRNOG00000030683)	Supv3l1 (ENSRNOG00000000392)	Hkdc1 (ENSRNOG00000049045)	Hk1 (ENSRNOG00000046891)	Tacr2 (ENSRNOG00000050658)	Tspan15 (ENSRNOG00000046204)	Neurog3 (ENSRNOG00000024413)	Fam241b (ENSRNOG00000000551)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1622																Zup1 (ENSNGAG00000020874) #22	Rsph4a (ENSNGAG00000022773) #23	ENSNGAG00000023286	ENSNGAG00000023845	ENSNGAG00000021507	ENSNGAG00000022138 #24	Calhm4 (ENSNGAG00000011668) #25	Trappc3l (ENSNGAG00000020430) #26	Calhm5 (ENSNGAG00000021647) #27	Calhm6 (ENSNGAG00000022608) #28	Dse (ENSNGAG00000023284) #30	Tspyl1 (ENSNGAG00000002957) #32	Tspyl4 (ENSNGAG00000013340) #33	Nt5dc1 (ENSNGAG00000017414) #34	ENSNGAG00000019635 #35	Frk (ENSNGAG00000023884) #36
Lesser Egyptian jerboa	MODERN SPECIES	44	Fam184a (ENSJJAG00000020537)	ENSJJAG00000008541	Asf1a (ENSJJAG00000009705)	Cep85l (ENSJJAG00000016233) #7	Pln (ENSJJAG00000003066) #8	ENSJJAG00000021447	ENSJJAG00000013262	Slc35f1 (ENSJJAG00000016095) #10	Nus1 (ENSJJAG00000016913) #11	Nepn (ENSJJAG00000011885)	Gopc (ENSJJAG00000013218) #13	Dcbld1 (ENSJJAG00000011489) #14	Ros1 (ENSJJAG00000022739) #16	Vgll2 (ENSJJAG00000015020) #17	Rfx6 (ENSJJAG00000020654) #18	Zup1 (ENSJJAG00000016597) #22	Rag1 (ENSJJAG00000003473)	ENSJJAG00000014496	ENSJJAG00000019626
Kangaroo rat	MODERN SPECIES	476	Asf1a (ENSDORG00000010010)	Cep85l (ENSDORG00000008984) #7	Pln (ENSDORG00000028705) #8	ENSDORG00000025142	Slc35f1 (ENSDORG00000011293) #10	ENSDORG00000023742 #11	Nepn (ENSDORG00000026879)	Gopc (ENSDORG00000015778) #13	Dcbld1 (ENSDORG00000015776) #14	Ros1 (ENSDORG00000007167) #16	Vgll2 (ENSDORG00000016343) #17	Rfx6 (ENSDORG00000013591) #18	Gprc6a (ENSDORG00000013585) #19	Fam162b (ENSDORG00000024159) #20	ENSDORG00000015949 #21	Zup1 (ENSDORG00000003947) #22	Rsph4a (ENSDORG00000003944) #23	ENSDORG00000025806	Rwdd1 (ENSDORG00000012373) #24	Calhm4 (ENSDORG00000012772) #25	Trappc3l (ENSDORG00000012769) #26	Calhm5 (ENSDORG00000012771) #27	Calhm6 (ENSDORG00000012765) #28	Dse (ENSDORG00000012764) #30	Tspyl4 (ENSDORG00000027297) #33	Nt5dc1 (ENSDORG00000010307) #34	ENSDORG00000010312 #35	Frk (ENSDORG00000000702) #36	Hs3st5 (ENSDORG00000028438)	Hdac2 (ENSDORG00000013317)	Lama4 (ENSDORG00000012032)
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00390000004692.d.b	ENSGT00940000169249	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000156987 #36	ENSGT00940000158991
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00390000004692.d.b	ENSGT00940000169249	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.x	ENSGT00940000156772.w	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000163953	ENSGT00940000155676 #34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36
Marmotini	ANCESTRAL SPECIES	11	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT01100000266009	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.x	ENSGT00940000156772.w	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000163953	ENSGT00940000156987 #36
Marmotini_b	ANCESTRAL SPECIES	178	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT01100000266009	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23
Squirrel	MODERN SPECIES	604																ZUP1 (ENSSTOG00000012338) #22	RSPH4A (ENSSTOG00000033876) #23	ENSSTOG00000025159
Arctic ground squirrel	MODERN SPECIES	133	MCM9 (ENSUPAG00010021995)	PLN (ENSUPAG00010021993) #8	CEP85L (ENSUPAG00010021985) #7	SLC35F1 (ENSUPAG00010021982) #10	NUS1 (ENSUPAG00010021980) #11	ENSUPAG00010021978	ENSUPAG00010021976	GOPC (ENSUPAG00010021972) #13	DCBLD1 (ENSUPAG00010021968) #14	ROS1 (ENSUPAG00010021948) #16	VGLL2 (ENSUPAG00010021945) #17	RFX6 (ENSUPAG00010021936) #18	GPRC6A (ENSUPAG00010021931) #19	FAM162B (ENSUPAG00010021928) #20	KPNA5 (ENSUPAG00010021924) #21	ENSUPAG00010021922 #22
Alpin marmot	MODERN SPECIES	2	ENSMMMG00000016017	PLN (ENSMMMG00000016004) #8	CEP85L (ENSMMMG00000015976) #7	SLC35F1 (ENSMMMG00000015966) #10	NUS1 (ENSMMMG00000015950) #11	ENSMMMG00000015941	ENSMMMG00000015939	GOPC (ENSMMMG00000015918) #13	DCBLD1 (ENSMMMG00000015903) #14	ROS1 (ENSMMMG00000015799) #16	VGLL2 (ENSMMMG00000015787) #17	RFX6 (ENSMMMG00000015641) #18	GPRC6A (ENSMMMG00000015597) #19	FAM162B (ENSMMMG00000015589) #20	KPNA5 (ENSMMMG00000015469) #21	ZUP1 (ENSMMMG00000015434) #22	RSPH4A (ENSMMMG00000015424) #23	ENSMMMG00000015402	ENSMMMG00000015383	ENSMMMG00000015375	RWDD1 (ENSMMMG00000015368) #24	CALHM4 (ENSMMMG00000015364) #25	CALHM5 (ENSMMMG00000015357) #27	CALHM6 (ENSMMMG00000015349) #28	DSE (ENSMMMG00000015341) #30	TSPYL4 (ENSMMMG00000015326) #33	ENSMMMG00000015321	ENSMMMG00000015316 #34	FRK (ENSMMMG00000015306) #36	HS3ST5 (ENSMMMG00000015290)	HDAC2 (ENSMMMG00000015264)
Eurasian red squirrel	MODERN SPECIES	16	ENSSVLG00005007753	CEP85L (ENSSVLG00005007817) #7	ENSSVLG00005008007	PLN (ENSSVLG00005008023) #8	ENSSVLG00005008035	SLC35F1 (ENSSVLG00005008070) #10	ENSSVLG00005008163 #11	ENSSVLG00005008200	GOPC (ENSSVLG00005008267) #13	ROS1 (ENSSVLG00005008411) #16	VGLL2 (ENSSVLG00005008910) #17	RFX6 (ENSSVLG00005008988) #18	GPRC6A (ENSSVLG00005009132) #19	FAM162B (ENSSVLG00005009241) #20	KPNA5 (ENSSVLG00005009288) #21	ZUP1 (ENSSVLG00005009321) #22	RSPH4A (ENSSVLG00005009389) #23	ENSSVLG00005009507	ENSSVLG00005009556 #24	CALHM4 (ENSSVLG00005009602) #25	TRAPPC3L (ENSSVLG00005009643) #26	CALHM5 (ENSSVLG00005009693) #27	CALHM6 (ENSSVLG00005009719) #28	DSE (ENSSVLG00005009768) #30	TSPYL1 (ENSSVLG00005009835) #32	TSPYL4 (ENSSVLG00005009852) #33	NT5DC1 (ENSSVLG00005009872) #34	COL10A1 (ENSSVLG00005009901) #35	FRK (ENSSVLG00005009937) #36	ENSSVLG00005010009	ENSSVLG00005010037
Hystricomorpha	ANCESTRAL SPECIES	39	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154550.a.f	ENSGT00390000004660.C.a.a.b	ENSGT00950000182984.a
Hystricomorpha_a	ANCESTRAL SPECIES	30																ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT01050000244950.a.a.b #21	ENSGT00640000091497.b #20	ENSGT00940000158416 #19	ENSGT01050000244879.b.a.b.b #18	ENSGT00530000063353.a.b.a #17	ENSGT00940000160831 #16	ENSGT00940000157334 #14	ENSGT00940000156535 #13	ENSGT00940000162914	ENSGT00390000003223 #11	ENSGT00390000015655.b #10	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT01090000260080.b.a
Hystricomorpha_b	ANCESTRAL SPECIES	29																ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT01050000244950.a.a.b #21	ENSGT00940000158416 #19	ENSGT01050000244879.b.a.b.b #18	ENSGT00530000063353.a.b.a #17	ENSGT00940000160831 #16	ENSGT00940000157334 #14	ENSGT00940000156535 #13	ENSGT00390000003223 #11	ENSGT00390000015655.b #10	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00530000063669.b
Long-tailed chinchilla	MODERN SPECIES	143																ZUP1 (ENSCLAG00000007886) #22	RSPH4A (ENSCLAG00000009580) #23	KPNA5 (ENSCLAG00000010089) #21	GPRC6A (ENSCLAG00000007059) #19	RFX6 (ENSCLAG00000008090) #18	ROS1 (ENSCLAG00000007326) #16	ENSCLAG00000007845 #14	GOPC (ENSCLAG00000008237) #13	NUS1 (ENSCLAG00000010652) #11	SLC35F1 (ENSCLAG00000008410) #10	CEP85L (ENSCLAG00000010088) #7	PLN (ENSCLAG00000007403) #8	MCM9 (ENSCLAG00000009689)	ASF1A (ENSCLAG00000013483)	FAM184A (ENSCLAG00000006832)	MAN1A1 (ENSCLAG00000007613)
Degu	MODERN SPECIES	75																ZUP1 (ENSODEG00000004926) #22	RSPH4A (ENSODEG00000005270) #23	ENSODEG00000019159	RFX6 (ENSODEG00000006706) #18	VGLL2 (ENSODEG00000005506) #17	ROS1 (ENSODEG00000006047) #16	ENSODEG00000004793	GOPC (ENSODEG00000005332) #13	NUS1 (ENSODEG00000005194) #11	ENSODEG00000019196	SLC35F1 (ENSODEG00000005040) #10	CEP85L (ENSODEG00000005733) #7	PLN (ENSODEG00000019260) #8	MCM9 (ENSODEG00000005446)	ENSODEG00000005478	FAM184A (ENSODEG00000004943)
Guinea pig	MODERN SPECIES	1	FZD3 (ENSCPOG00000009989)	FBXO16 (ENSCPOG00000019834)	ENSCPOG00000034090	AGPAT5 (ENSCPOG00000006565)	MCPH1 (ENSCPOG00000015508)	ANGPT2 (ENSCPOG00000030082)	CSMD1 (ENSCPOG00000015501)	MYOM2 (ENSCPOG00000002402)	KBTBD11 (ENSCPOG00000026453)	ARHGEF10 (ENSCPOG00000022520)	CLN8 (ENSCPOG00000035105)	DLGAP2 (ENSCPOG00000011579)	ENSCPOG00000013031	TDRP (ENSCPOG00000035181)	FBXO25 (ENSCPOG00000008110)	ZUP1 (ENSCPOG00000000534) #22	RSPH4A (ENSCPOG00000000533) #23	KPNA5 (ENSCPOG00000035973) #21	FAM162B (ENSCPOG00000006389) #20	RFX6 (ENSCPOG00000015023) #18	VGLL2 (ENSCPOG00000021559) #17	ENSCPOG00000012998 #16	DCBLD1 (ENSCPOG00000002737) #14	GOPC (ENSCPOG00000010125) #13	ENSCPOG00000027426	ENSCPOG00000031032	NUS1 (ENSCPOG00000039822) #11	SLC35F1 (ENSCPOG00000029995) #10	ENSCPOG00000024368	TPD52L1 (ENSCPOG00000013150)	HDDC2 (ENSCPOG00000013151)
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000000614	ENSHGLG00000042162	ENSHGLG00000000399	ENSHGLG00000009321	ENSHGLG00000009379	ENSHGLG00000048422	ENSHGLG00000004775	ENSHGLG00000036302	ENSHGLG00000036746 #13	ENSHGLG00000013205 #14	VGLL2 (ENSHGLG00000048393) #17	RFX6 (ENSHGLG00000019573) #18	GPRC6A (ENSHGLG00000036750) #19	ENSHGLG00000008946	KPNA5 (ENSHGLG00000007645) #21	ENSHGLG00000009896 #22	ENSHGLG00000002525 #23	ENSHGLG00000049438	ENSHGLG00000035661	ENSHGLG00000050402	ENSHGLG00000005874	ENSHGLG00000016052	ENSHGLG00000035693	ENSHGLG00000032597	ABHD16A (ENSHGLG00000011099)	CSNK2B (ENSHGLG00000011657)	GPANK1 (ENSHGLG00000046532)	APOM (ENSHGLG00000012211)	C6orf47 (ENSHGLG00000048233)	BAG6 (ENSHGLG00000012423)	ENSHGLG00000032997
Lagomorpha	ANCESTRAL SPECIES	108	ENSGT00530000063669.b	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT01050000244950.a.a.b #21	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000166162	ENSGT00940000162991 #33	ENSGT00960000188119	ENSGT00940000163953	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34
Rabbit	MODERN SPECIES	3	ENSOCUG00000033048	NUS1 (ENSOCUG00000011553) #11	ENSOCUG00000024042	GOPC (ENSOCUG00000002627) #13	ENSOCUG00000031141	DCBLD1 (ENSOCUG00000003157) #14	ROS1 (ENSOCUG00000003205) #16	VGLL2 (ENSOCUG00000003200) #17	ENSOCUG00000034186	RFX6 (ENSOCUG00000013227) #18	ENSOCUG00000013444	ENSOCUG00000037461	GPRC6A (ENSOCUG00000010194) #19	FAM162B (ENSOCUG00000022415) #20	ENSOCUG00000037695	ZUP1 (ENSOCUG00000007805) #22	RSPH4A (ENSOCUG00000009852) #23	KPNA5 (ENSOCUG00000007812) #21	ENSOCUG00000021703	ENSOCUG00000022763	SULT3A1 (ENSOCUG00000021060)	ENSOCUG00000013592 #24	CALHM4 (ENSOCUG00000025315) #25	CALHM5 (ENSOCUG00000002660) #27	TRAPPC3L (ENSOCUG00000002656) #26	ENSOCUG00000032983	ENSOCUG00000035395	ENSOCUG00000030465	CALHM6 (ENSOCUG00000029266) #28	DSE (ENSOCUG00000007344) #30	ENSOCUG00000032572
Pika	MODERN SPECIES	244																ENSOPRG00000007061 #22	ENSOPRG00000007052 #23
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00940000169249	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00990000213455	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00960000188119	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00390000004692.d.b	ENSGT00940000169249	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT01010000228913	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000163953	ENSGT00940000155676 #34
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT01090000260080.b.a	ENSGT00940000169249	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT01010000228913	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000163953	ENSGT00940000155676 #34
Suina	ANCESTRAL SPECIES	18	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT00940000154406.b.h	ENSGT00940000155080	ENSGT00940000163741	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B
Pig	MODERN SPECIES		PLN (ENSSSCG00000062089) #8	SLC35F1 (ENSSSCG00000004250) #10	ENSSSCG00000055064	NUS1 (ENSSSCG00000020885) #11	ENSSSCG00000004252	GOPC (ENSSSCG00000004253) #13	DCBLD1 (ENSSSCG00000004254) #14	ROS1 (ENSSSCG00000026978) #16	ENSSSCG00000045461	VGLL2 (ENSSSCG00000004255) #17	RFX6 (ENSSSCG00000039333) #18	GPRC6A (ENSSSCG00000053030) #19	FAM162B (ENSSSCG00000038522) #20	ENSSSCG00000004261	KPNA5 (ENSSSCG00000004262) #21	ZUP1 (ENSSSCG00000004263) #22	RSPH4A (ENSSSCG00000023834) #23	ENSSSCG00000032533	PTP4A1 (ENSSSCG00000025941)	PHF3 (ENSSSCG00000035259)	ENSSSCG00000004269	ADGRB3 (ENSSSCG00000004270)	LMBRD1 (ENSSSCG00000004272)	ENSSSCG00000061940	COL19A1 (ENSSSCG00000044472)	COL9A1 (ENSSSCG00000004274)	FAM135A (ENSSSCG00000004275)	SDHAF4 (ENSSSCG00000051834)	SMAP1 (ENSSSCG00000004276)	B3GAT2 (ENSSSCG00000026246)	ENSSSCG00000058784
Chacoan peccary	MODERN SPECIES	58	CEP85L (ENSCWAG00000006572) #7	PLN (ENSCWAG00000006689) #8	ENSCWAG00000006708	SLC35F1 (ENSCWAG00000006721) #10	NUS1 (ENSCWAG00000006794) #11	ENSCWAG00000006813	ENSCWAG00000006829	GOPC (ENSCWAG00000006874) #13	DCBLD1 (ENSCWAG00000006987) #14	ROS1 (ENSCWAG00000007189) #16	VGLL2 (ENSCWAG00000007519) #17	RFX6 (ENSCWAG00000007567) #18	GPRC6A (ENSCWAG00000007649) #19	FAM162B (ENSCWAG00000007777) #20	KPNA5 (ENSCWAG00000007817) #21	ENSCWAG00000007849 #22	RSPH4A (ENSCWAG00000007907) #23	PTP4A1 (ENSCWAG00000008091)	PHF3 (ENSCWAG00000008163)
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00390000004692.d.b	ENSGT00940000169249	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.q.a	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT01010000228913	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000163953	ENSGT00940000155676 #34
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00390000004692.d.b	ENSGT00940000169249	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.r	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT01010000228913	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000155676 #34	ENSGT00940000156987 #36
Cetacea	ANCESTRAL SPECIES	18	ENSGT00940000169249	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00940000155203.c.a.a.b	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.r	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT01010000228913	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000155676 #34	ENSGT00940000156987 #36
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00940000169249	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00940000155203.c.a.a.b	ENSGT00390000003223.fb.a #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.r	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT01010000228913	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000155676 #34	ENSGT00940000156987 #36
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00940000155203.c.a.a.b	ENSGT00390000003223.fb.a #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.r	ENSGT00390000009168 #24	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT01010000228913	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00390000010210.g
Dolphin	MODERN SPECIES	3433									DCBLD1 (ENSTTRG00000011088) #14	ROS1 (ENSTTRG00000011071) #16	VGLL2 (ENSTTRG00000011067) #17	RFX6 (ENSTTRG00000011052) #18	ENSTTRG00000011044 #19	FAM162B (ENSTTRG00000011040) #20	KPNA5 (ENSTTRG00000011021) #21	ZUP1 (ENSTTRG00000010991) #22	ENSTTRG00000021456	RSPH4A (ENSTTRG00000010968) #23
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00940000169249	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00940000155203.c.a.a.b	ENSGT00390000003223.fb.a #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.r	ENSGT00390000009168 #24	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT01010000228913	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00390000010210.g
Vaquita	MODERN SPECIES	3	ASF1A (ENSPSNG00000011854)	CEP85L (ENSPSNG00000011947) #7	SLC35F1 (ENSPSNG00000012406) #10	ENSPSNG00000012517	ENSPSNG00000012539	ENSPSNG00000012573 #11	ENSPSNG00000012618	GOPC (ENSPSNG00000012679) #13	DCBLD1 (ENSPSNG00000012812) #14	ENSPSNG00000012888	ROS1 (ENSPSNG00000012984) #16	VGLL2 (ENSPSNG00000014117) #17	RFX6 (ENSPSNG00000014229) #18	ENSPSNG00000014478 #19	KPNA5 (ENSPSNG00000014587) #21	ZUP1 (ENSPSNG00000014675) #22	RSPH4A (ENSPSNG00000014807) #23	ENSPSNG00000015114	ENSPSNG00000015188	RWDD1 (ENSPSNG00000015291) #24	CALHM5 (ENSPSNG00000015370) #27	ENSPSNG00000015417 #26	CALHM6 (ENSPSNG00000015458) #28	DSE (ENSPSNG00000015522) #30	TSPYL1 (ENSPSNG00000008248) #32	TSPYL4 (ENSPSNG00000008269) #33	NT5DC1 (ENSPSNG00000008301) #34	COL10A1 (ENSPSNG00000008333) #35	FRK (ENSPSNG00000008357) #36	ENSPSNG00000008427	HS3ST5 (ENSPSNG00000008454)
Monodontidae	ANCESTRAL SPECIES	18	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT01000000221368	ENSGT00390000015655.b #10	ENSGT00940000155203.c.a.a.b	ENSGT00390000003223.fb.a #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.r	ENSGT00390000009168 #24	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT01010000228913	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991
Narwhal	MODERN SPECIES	301	MCM9 (ENSMMNG00015006031)	PLN (ENSMMNG00015006015) #8	CEP85L (ENSMMNG00015005952) #7	ENSMMNG00015005922	SLC35F1 (ENSMMNG00015005905) #10	ENSMMNG00015005892	NUS1 (ENSMMNG00015005877) #11	ENSMMNG00015005868	GOPC (ENSMMNG00015005841) #13	DCBLD1 (ENSMMNG00015005797) #14	ROS1 (ENSMMNG00015005760) #16	VGLL2 (ENSMMNG00015005717) #17	RFX6 (ENSMMNG00015005664) #18	ENSMMNG00015005645	KPNA5 (ENSMMNG00015005622) #21	ZUP1 (ENSMMNG00015005586) #22	RSPH4A (ENSMMNG00015005528) #23	ENSMMNG00015005470	RWDD1 (ENSMMNG00015005444) #24	CALHM5 (ENSMMNG00015005431) #27	ENSMMNG00015005423 #26	CALHM6 (ENSMMNG00015005416) #28	DSE (ENSMMNG00015005398) #30	TSPYL1 (ENSMMNG00015005374) #32	TSPYL4 (ENSMMNG00015005368) #33	ENSMMNG00015005366	COL10A1 (ENSMMNG00015005355) #35	ENSMMNG00015005344	NT5DC1 (ENSMMNG00015005330) #34	FRK (ENSMMNG00015005316) #36	HS3ST5 (ENSMMNG00015005299)
Beluga whale	MODERN SPECIES	80	ENSDLEG00000010445	PLN (ENSDLEG00000010440) #8	CEP85L (ENSDLEG00000010400) #7	ENSDLEG00000010386	SLC35F1 (ENSDLEG00000010371) #10	ENSDLEG00000010354	ENSDLEG00000010342 #11	ENSDLEG00000010330	GOPC (ENSDLEG00000010264) #13	DCBLD1 (ENSDLEG00000010188) #14	ROS1 (ENSDLEG00000009633) #16	VGLL2 (ENSDLEG00000009573) #17	RFX6 (ENSDLEG00000009399) #18	ENSDLEG00000009360 #20	KPNA5 (ENSDLEG00000009304) #21	ZUFSP (ENSDLEG00000009259) #22	RSPH4A (ENSDLEG00000009231) #23	ENSDLEG00000009142	RWDD1 (ENSDLEG00000009107) #24	CALHM5 (ENSDLEG00000009096) #27	TRAPPC3L (ENSDLEG00000009065) #26	CALHM6 (ENSDLEG00000009051) #28	DSE (ENSDLEG00000009031) #30	TSPYL1 (ENSDLEG00000009017) #32	TSPYL4 (ENSDLEG00000009007) #33	ENSDLEG00000008984	ENSDLEG00000008963	COL10A1 (ENSDLEG00000008950) #35	NT5DC1 (ENSDLEG00000008913) #34	FRK (ENSDLEG00000008878) #36	HS3ST5 (ENSDLEG00000008858)
Sperm whale	MODERN SPECIES	1	CEP85L (ENSPCTG00005011336) #7	PLN (ENSPCTG00005011549) #8	SLC35F1 (ENSPCTG00005011579) #10	ENSPCTG00005011731	NUS1 (ENSPCTG00005011761) #11	ENSPCTG00005011801	GOPC (ENSPCTG00005011840) #13	DCBLD1 (ENSPCTG00005011969) #14	ROS1 (ENSPCTG00005012163) #16	VGLL2 (ENSPCTG00005012958) #17	RFX6 (ENSPCTG00005013021) #18	GPRC6A (ENSPCTG00005013287) #19	ENSPCTG00005013422	ENSPCTG00005013476	KPNA5 (ENSPCTG00005013498) #21	ZUP1 (ENSPCTG00005013556) #22	RSPH4A (ENSPCTG00005013636) #23	ENSPCTG00005013836	RWDD1 (ENSPCTG00005013868) #24	CALHM4 (ENSPCTG00005013957) #25	CALHM5 (ENSPCTG00005013991) #27	ENSPCTG00005014023 #26	CALHM6 (ENSPCTG00005014068) #28	DSE (ENSPCTG00005014130) #30	TSPYL1 (ENSPCTG00005014244) #32	TSPYL4 (ENSPCTG00005014296) #33	NT5DC1 (ENSPCTG00005014318) #34	COL10A1 (ENSPCTG00005014373) #35	FRK (ENSPCTG00005014412) #36	ENSPCTG00005014516	HS3ST5 (ENSPCTG00005014555)
Blue whale	MODERN SPECIES	3	ENSBMSG00010012377	CEP85L (ENSBMSG00010012406) #7	PLN (ENSBMSG00010012457) #8	SLC35F1 (ENSBMSG00010012473) #10	ENSBMSG00010012487	NUS1 (ENSBMSG00010012495) #11	ENSBMSG00010012507	GOPC (ENSBMSG00010012533) #13	DCBLD1 (ENSBMSG00010012558) #14	ROS1 (ENSBMSG00010012625) #16	VGLL2 (ENSBMSG00010012771) #17	RFX6 (ENSBMSG00010012789) #18	FAM162B (ENSBMSG00010012817) #20	ENSBMSG00010012825	KPNA5 (ENSBMSG00010012836) #21	ZUP1 (ENSBMSG00010012859) #22	RSPH4A (ENSBMSG00010012884) #23	ENSBMSG00010012918	RWDD1 (ENSBMSG00010012927) #24	CALHM5 (ENSBMSG00010012937) #27	ENSBMSG00010012945 #26	CALHM6 (ENSBMSG00010012947) #28	DSE (ENSBMSG00010012963) #30	TSPYL1 (ENSBMSG00010012974) #32	TSPYL4 (ENSBMSG00010012977) #33	NT5DC1 (ENSBMSG00010012985) #34	COL10A1 (ENSBMSG00010012998) #35	FRK (ENSBMSG00010013005) #36	HS3ST5 (ENSBMSG00010013020)	ENSBMSG00010013029	MARCKS (ENSBMSG00010013045)
Pecora	ANCESTRAL SPECIES	19	ENSGT00390000004692.d.b	ENSGT00940000169249	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT01030000235179	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.q.a	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000155676 #34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725
Percora_a	ANCESTRAL SPECIES	21	ENSGT00390000004692.d.b	ENSGT00940000169249	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT01030000235179	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.q.b	ENSGT00390000009168.v.a #24	ENSGT00940000156772.q.a	ENSGT00390000009168.v.b #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000155676 #34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36
Bovidae	ANCESTRAL SPECIES	21	ENSGT00390000004692.d.b	ENSGT00940000169249	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT01030000235179	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.q.b	ENSGT00940000156772.q.a	ENSGT00390000009168.v.b #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000155676 #34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36	ENSGT00940000158991
Caprinae	ANCESTRAL SPECIES	33	ENSGT00390000004692.d.b	ENSGT00940000169249	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT01030000235179	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.q.a	ENSGT00390000009168.v.a.b #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000155676 #34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725
Rambouillet Sheep	MODERN SPECIES	24	ASF1A (ENSOARG00020022814)	ENSOARG00020022845	CEP85L (ENSOARG00020022872) #7	PLN (ENSOARG00020023014) #8	SLC35F1 (ENSOARG00020023042) #10	ENSOARG00020023109	NUS1 (ENSOARG00020023137) #11	ENSOARG00020023154	GOPC (ENSOARG00020023190) #13	DCBLD1 (ENSOARG00020023381) #14	ROS1 (ENSOARG00020003121) #16	VGLL2 (ENSOARG00020003907) #17	RFX6 (ENSOARG00020003959) #18	FAM162B (ENSOARG00020004032) #20	KPNA5 (ENSOARG00020004060) #21	ZUP1 (ENSOARG00020004156) #22	ENSOARG00020004418	ENSOARG00020004445 #24	CALHM4 (ENSOARG00020004478) #25	TRAPPC3L (ENSOARG00020004501) #26	CALHM5 (ENSOARG00020004537) #27	DSE (ENSOARG00020004597) #30	TSPYL1 (ENSOARG00020004668) #32	ENSOARG00020004681 #33	ENSOARG00020004693 #33	NT5DC1 (ENSOARG00020004710) #34	COL10A1 (ENSOARG00020004849) #35	FRK (ENSOARG00020004867) #36	ENSOARG00020004910	HS3ST5 (ENSOARG00020004941)	HDAC2 (ENSOARG00020004977)
Goat	MODERN SPECIES	28	ASF1A (ENSCHIG00000008452)	CEP85L (ENSCHIG00000025357) #7	PLN (ENSCHIG00000011759) #8	ENSCHIG00000021349	SLC35F1 (ENSCHIG00000020935) #10	ENSCHIG00000010902	ENSCHIG00000025425 #11	ENSCHIG00000018408	GOPC (ENSCHIG00000017940) #13	ENSCHIG00000010524 #14	ROS1 (ENSCHIG00000016323) #16	VGLL2 (ENSCHIG00000014445) #17	RFX6 (ENSCHIG00000021570) #18	KPNA5 (ENSCHIG00000025297) #21	FAM162B (ENSCHIG00000013451) #20	ZUP1 (ENSCHIG00000022998) #22	RSPH4A (ENSCHIG00000022737) #23	ENSCHIG00000014681	ENSCHIG00000020636 #24	CALHM4 (ENSCHIG00000006125) #25	TRAPPC3L (ENSCHIG00000021481) #26	CALHM5 (ENSCHIG00000018702) #27	ENSCHIG00000022717 #28	ENSCHIG00000025860 #28	DSE (ENSCHIG00000010064) #30	TSPYL1 (ENSCHIG00000013019) #32	NT5DC1 (ENSCHIG00000025209) #34	COL10A1 (ENSCHIG00000008425) #35	FRK (ENSCHIG00000006701) #36	HS3ST5 (ENSCHIG00000019513)	HDAC2 (ENSCHIG00000024213)
Bovinae	ANCESTRAL SPECIES	31	ENSGT00530000063669.b	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.q.b	ENSGT00940000156772.q.a	ENSGT00390000009168.v.b #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821.g.a #32	ENSGT00940000162991 #33	ENSGT00940000155676 #34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36	ENSGT00940000158991
Bos	ANCESTRAL SPECIES	19	ENSGT00530000063669.b	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.q.b	ENSGT00940000156772.q.a	ENSGT00390000009168.v.b #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821.g.a #32	ENSGT00940000162991 #33	ENSGT00940000155676 #34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36	ENSGT00940000158991
Bos_a	ANCESTRAL SPECIES	18	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT01030000237615	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.q.b	ENSGT00940000156772.q.a	ENSGT00390000009168.v.b #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821.g.a #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991
Domestic yak	MODERN SPECIES	1	ENSBGRG00000008475 #8	CEP85L (ENSBGRG00000008030) #7	ENSBGRG00000007952	SLC35F1 (ENSBGRG00000007815) #10	NUS1 (ENSBGRG00000007754) #11	ENSBGRG00000007720	GOPC (ENSBGRG00000007399) #13	DCBLD1 (ENSBGRG00000006916) #14	ENSBGRG00000006862	ENSBGRG00000006843	ROS1 (ENSBGRG00000006479) #16	VGLL2 (ENSBGRG00000006319) #17	RFX6 (ENSBGRG00000006177) #18	FAM162B (ENSBGRG00000006132) #20	KPNA5 (ENSBGRG00000006026) #21	ZUP1 (ENSBGRG00000005961) #22	RSPH4A (ENSBGRG00000005878) #23	ENSBGRG00000005844	RWDD1 (ENSBGRG00000005754) #24	CALHM4 (ENSBGRG00000005714) #25	CALHM5 (ENSBGRG00000005669) #27	TRAPPC3L (ENSBGRG00000005625) #26	CALHM6 (ENSBGRG00000005600) #28	DSE (ENSBGRG00000005532) #30	ENSBGRG00000005510 #32	TSPYL4 (ENSBGRG00000005502) #33	COL10A1 (ENSBGRG00000005476) #35	NT5DC1 (ENSBGRG00000005373) #34	FRK (ENSBGRG00000005311) #36	HS3ST5 (ENSBGRG00000013854)	HDAC2 (ENSBGRG00000013629)
Wild yak	MODERN SPECIES	855													RFX6 (ENSBMUG00000021385) #18	FAM162B (ENSBMUG00000021406) #20	KPNA5 (ENSBMUG00000021424) #21	ZUP1 (ENSBMUG00000021452) #22	RSPH4A (ENSBMUG00000021494) #23	ENSBMUG00000021516	ENSBMUG00000021521	RWDD1 (ENSBMUG00000021530) #24	CALHM4 (ENSBMUG00000021540) #25	TRAPPC3L (ENSBMUG00000021553) #26	CALHM5 (ENSBMUG00000021569) #27
Bos_b	ANCESTRAL SPECIES	24	ENSGT00530000063669.b	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.q.b	ENSGT00940000156772.q.a	ENSGT00940000156772.r	ENSGT00390000009168.v.b #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821.g.a #32	ENSGT00940000162991 #33	ENSGT00940000155676 #34	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36
Cow	MODERN SPECIES	28	FAM184A (ENSBTAG00000015467)	MCM9 (ENSBTAG00000002059)	ASF1A (ENSBTAG00000002058)	CEP85L (ENSBTAG00000012929) #7	PLN (ENSBTAG00000012931) #8	SLC35F1 (ENSBTAG00000033657) #10	NUS1 (ENSBTAG00000053374) #11	NEPN (ENSBTAG00000039574)	GOPC (ENSBTAG00000016046) #13	DCBLD1 (ENSBTAG00000047338) #14	ROS1 (ENSBTAG00000047600) #16	VGLL2 (ENSBTAG00000046282) #17	RFX6 (ENSBTAG00000000264) #18	FAM162B (ENSBTAG00000033460) #20	KPNA5 (ENSBTAG00000026673) #21	ZUP1 (ENSBTAG00000003878) #22	RSPH4A (ENSBTAG00000011890) #23	ENSBTAG00000050815	SULT1C4 (ENSBTAG00000026672)	RWDD1 (ENSBTAG00000009689) #24	CALHM4 (ENSBTAG00000033535) #25	TRAPPC3L (ENSBTAG00000033554) #26	CALHM5 (ENSBTAG00000045879) #27	CALHM6 (ENSBTAG00000006549) #28	DSE (ENSBTAG00000005205) #30	TSPYL1 (ENSBTAG00000010885) #32	TSPYL4 (ENSBTAG00000009127) #33	NT5DC1 (ENSBTAG00000003076) #34	COL10A1 (ENSBTAG00000003078) #35	FRK (ENSBTAG00000020018) #36	HS3ST5 (ENSBTAG00000000188)
Hybrid Bos Indicus	MODERN SPECIES	28	ENSBIXG00005010773	CEP85L (ENSBIXG00005010729) #7	PLN (ENSBIXG00005010671) #8	SLC35F1 (ENSBIXG00005010639) #10	ENSBIXG00005010624	ENSBIXG00005010607	NUS1 (ENSBIXG00005000685) #11	ENSBIXG00005000708	GOPC (ENSBIXG00005010544) #13	DCBLD1 (ENSBIXG00005000746) #14	ROS1 (ENSBIXG00005010381) #16	VGLL2 (ENSBIXG00005010356) #17	RFX6 (ENSBIXG00005010323) #18	FAM162B (ENSBIXG00005010298) #20	KPNA5 (ENSBIXG00005000829) #21	ZUP1 (ENSBIXG00005010258) #22	RSPH4A (ENSBIXG00005010221) #23	ENSBIXG00005010142	ENSBIXG00005010118	ENSBIXG00005006416 #24	CALHM4 (ENSBIXG00005010065) #25	TRAPPC3L (ENSBIXG00005010050) #26	CALHM5 (ENSBIXG00005000765) #27	CALHM6 (ENSBIXG00005010017) #28	DSE (ENSBIXG00005009989) #30	ENSBIXG00005009950 #32	TSPYL4 (ENSBIXG00005009942) #33	NT5DC1 (ENSBIXG00005009924) #34	COL10A1 (ENSBIXG00005009915) #35	FRK (ENSBIXG00005009902) #36	HS3ST5 (ENSBIXG00005000647)
American bison	MODERN SPECIES	3332	FAM184A (ENSBBBG00000010108)	MCM9 (ENSBBBG00000010053)	ASF1A (ENSBBBG00000010028)	CEP85L (ENSBBBG00000010017) #7	PLN (ENSBBBG00000010007) #8	SLC35F1 (ENSBBBG00000010003) #10	NUS1 (ENSBBBG00000009996) #11	ENSBBBG00000009991	GOPC (ENSBBBG00000009979) #13	DCBLD1 (ENSBBBG00000001665) #14	ROS1 (ENSBBBG00000009903) #16	VGLL2 (ENSBBBG00000009836) #17	RFX6 (ENSBBBG00000009832) #18	FAM162B (ENSBBBG00000009824) #20	KPNA5 (ENSBBBG00000009821) #21	ZUP1 (ENSBBBG00000009809) #22	RSPH4A (ENSBBBG00000009798) #23	ENSBBBG00000009781 #24	CALHM4 (ENSBBBG00000009776) #25	TRAPPC3L (ENSBBBG00000009772) #26	CALHM5 (ENSBBBG00000001616) #27	ENSBBBG00000009766 #28	DSE (ENSBBBG00000009038) #30	ENSBBBG00000009757 #32	TSPYL4 (ENSBBBG00000009756) #33	NT5DC1 (ENSBBBG00000009754) #34	COL10A1 (ENSBBBG00000009745) #35	GOT2 (ENSBBBG00000009736)	SLC38A7 (ENSBBBG00000009730)	CNOT1 (ENSBBBG00000009711)	SETD6 (ENSBBBG00000009667)
Siberian musk deer	MODERN SPECIES	55	MCM9 (ENSMMSG00000003712)	ENSMMSG00000003736	CEP85L (ENSMMSG00000003761) #7	PLN (ENSMMSG00000003797) #8	SLC35F1 (ENSMMSG00000003815) #10	ENSMMSG00000003828	NUS1 (ENSMMSG00000003834) #11	ENSMMSG00000003850	GOPC (ENSMMSG00000003874) #13	DCBLD1 (ENSMMSG00000003913) #14	ROS1 (ENSMMSG00000003965) #16	VGLL2 (ENSMMSG00000004130) #17	RFX6 (ENSMMSG00000004143) #18	FAM162B (ENSMMSG00000004205) #20	KPNA5 (ENSMMSG00000004217) #21	ZUP1 (ENSMMSG00000004239) #22	RSPH4A (ENSMMSG00000004275) #23	ENSMMSG00000004337	ENSMMSG00000004355	ENSMMSG00000004377 #24	CALHM4 (ENSMMSG00000004408) #25	TRAPPC3L (ENSMMSG00000004425) #26	CALHM5 (ENSMMSG00000004430) #27	CALHM6 (ENSMMSG00000004443) #28	DSE (ENSMMSG00000004477) #30	TSPYL1 (ENSMMSG00000004513) #32	TSPYL4 (ENSMMSG00000004521) #33	NT5DC1 (ENSMMSG00000004536) #34	COL10A1 (ENSMMSG00000004611) #35	FRK (ENSMMSG00000004640) #36	ENSMMSG00000004714
Yarkand deer	MODERN SPECIES	20	MCM9 (ENSCHYG00000019990)	ASF1A (ENSCHYG00000020334)	CEP85L (ENSCHYG00000020415) #7	PLN (ENSCHYG00000020604) #8	SLC35F1 (ENSCHYG00000020751) #10	ENSCHYG00000020966	ENSCHYG00000021027 #11	ENSCHYG00000021123	GOPC (ENSCHYG00000021189) #13	DCBLD1 (ENSCHYG00000021744) #14	ROS1 (ENSCHYG00000021945) #16	ENSCHYG00000022426 #17	RFX6 (ENSCHYG00000022453) #18	FAM162B (ENSCHYG00000022579) #20	KPNA5 (ENSCHYG00000022607) #21	ZUP1 (ENSCHYG00000022708) #22	RSPH4A (ENSCHYG00000022831) #23	ENSCHYG00000023038	ENSCHYG00000023080 #24	CALHM4 (ENSCHYG00000023149) #25	TRAPPC3L (ENSCHYG00000023206) #26	CALHM5 (ENSCHYG00000023274) #27	CALHM6 (ENSCHYG00000023311) #28	ENSCHYG00000023336 #30	ENSCHYG00000023415	TSPYL4 (ENSCHYG00000023428) #33	NT5DC1 (ENSCHYG00000023450) #34	COL10A1 (ENSCHYG00000023514) #35	FRK (ENSCHYG00000023541) #36	HS3ST5 (ENSCHYG00000023609)	ENSCHYG00000023650
Camelidae	ANCESTRAL SPECIES	26	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00940000162914	ENSGT00390000003223 #11	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.q.a	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000163953	ENSGT00940000155676 #34	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000156987 #36
Arabian camel	MODERN SPECIES	34	ASF1A (ENSCDRG00005002302)	CEP85L (ENSCDRG00005002324) #7	PLN (ENSCDRG00005002352) #8	SLC35F1 (ENSCDRG00005002366) #10	NUS1 (ENSCDRG00005002419) #11	ENSCDRG00005002434	ENSCDRG00005002449	GOPC (ENSCDRG00005002474) #13	DCBLD1 (ENSCDRG00005002557) #14	ROS1 (ENSCDRG00005002608) #16	ENSCDRG00005002682 #17	RFX6 (ENSCDRG00005002698) #18	GPRC6A (ENSCDRG00005002744) #19	FAM162B (ENSCDRG00005002796) #20	KPNA5 (ENSCDRG00005002825) #21	ZUP1 (ENSCDRG00005002876) #22	RSPH4A (ENSCDRG00005002922) #23	ENSCDRG00005002955	RWDD1 (ENSCDRG00005002965) #24	CALHM4 (ENSCDRG00005002979) #25	TRAPPC3L (ENSCDRG00005002989) #26	CALHM5 (ENSCDRG00005003006) #27	CALHM6 (ENSCDRG00005003016) #28	DSE (ENSCDRG00005003068) #30	TSPYL1 (ENSCDRG00005003092) #32	TSPYL4 (ENSCDRG00005003098) #33	NT5DC1 (ENSCDRG00005003104) #34	COL10A1 (ENSCDRG00005003121) #35	ENSCDRG00005003130	FRK (ENSCDRG00005003143) #36	HS3ST5 (ENSCDRG00005003162)
Alpaca	MODERN SPECIES	2547									NUS1 (ENSVPAG00000002205) #11	GOPC (ENSVPAG00000002203) #13	DCBLD1 (ENSVPAG00000002199) #14	RFX6 (ENSVPAG00000002198) #18	GPRC6A (ENSVPAG00000002197) #19	FAM162B (ENSVPAG00000002195) #20	KPNA5 (ENSVPAG00000002193) #21	ZUP1 (ENSVPAG00000002192) #22	RSPH4A (ENSVPAG00000002191) #23	RWDD1 (ENSVPAG00000002189) #24	CALHM4 (ENSVPAG00000002188) #25	CALHM5 (ENSVPAG00000002187) #27	TRAPPC3L (ENSVPAG00000002186) #26	ENSVPAG00000002185 #28
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT01010000228913	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000155676 #34	ENSGT00940000156987 #36
Carnivora	ANCESTRAL SPECIES	4	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.i	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991
Caniformia	ANCESTRAL SPECIES	3	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.i	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.i	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725
Ursidae	ANCESTRAL SPECIES	22	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.i	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725
Ursus	ANCESTRAL SPECIES	45	ENSGT00530000063669.b	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.i	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33
American black bear	MODERN SPECIES	915												RFX6 (ENSUAMG00000012607) #18	GPRC6A (ENSUAMG00000012618) #19	FAM162B (ENSUAMG00000012622) #20	KPNA5 (ENSUAMG00000012631) #21	ZUP1 (ENSUAMG00000012655) #22	ENSUAMG00000012664 #23	ENSUAMG00000012667	ENSUAMG00000012671	ENSUAMG00000012674
Polar bear	MODERN SPECIES	172	MCM9 (ENSUMAG00000002850)	ASF1A (ENSUMAG00000002855)	CEP85L (ENSUMAG00000002861) #7	PLN (ENSUMAG00000002894) #8	SLC35F1 (ENSUMAG00000002903) #10	ENSUMAG00000002918	GOPC (ENSUMAG00000002923) #13	DCBLD1 (ENSUMAG00000002929) #14	ENSUMAG00000002944	ROS1 (ENSUMAG00000002961) #16	ENSUMAG00000003008 #17	RFX6 (ENSUMAG00000003019) #18	GPRC6A (ENSUMAG00000003068) #19	FAM162B (ENSUMAG00000003081) #20	KPNA5 (ENSUMAG00000003152) #21	ZUP1 (ENSUMAG00000003755) #22	ENSUMAG00000003759 #23	ENSUMAG00000003779	RWDD1 (ENSUMAG00000003790) #24	CALHM4 (ENSUMAG00000003797) #25	TRAPPC3L (ENSUMAG00000003801) #26	CALHM5 (ENSUMAG00000003806) #27	ENSUMAG00000003807 #28	DSE (ENSUMAG00000003818) #30	TSPYL1 (ENSUMAG00000003820) #32	TSPYL4 (ENSUMAG00000003828) #33	NT5DC1 (ENSUMAG00000003847) #34	COL10A1 (ENSUMAG00000004046) #35	ENSUMAG00000004050	FRK (ENSUMAG00000004055) #36
Giant Panda	MODERN SPECIES	1	ASF1A (ENSAMEG00000003609)	MCM9 (ENSAMEG00000003588)	PLN (ENSAMEG00000018850) #8	CEP85L (ENSAMEG00000003581) #7	SLC35F1 (ENSAMEG00000003576) #10	NUS1 (ENSAMEG00000005541) #11	ENSAMEG00000005537	GOPC (ENSAMEG00000005518) #13	DCBLD1 (ENSAMEG00000005509) #14	ROS1 (ENSAMEG00000005851) #16	ENSAMEG00000005850 #17	RFX6 (ENSAMEG00000005843) #18	GPRC6A (ENSAMEG00000005823) #19	FAM162B (ENSAMEG00000005819) #20	KPNA5 (ENSAMEG00000005775) #21	ZUP1 (ENSAMEG00000005752) #22	RSPH4A (ENSAMEG00000005736) #23	ENSAMEG00000023971	ENSAMEG00000005725	ENSAMEG00000005716	RWDD1 (ENSAMEG00000005692) #24	CALHM4 (ENSAMEG00000005689) #25	CALHM5 (ENSAMEG00000005685) #27	TRAPPC3L (ENSAMEG00000005682) #26	CALHM6 (ENSAMEG00000005679) #28	DSE (ENSAMEG00000005674) #30	TSPYL1 (ENSAMEG00000005672) #32	TSPYL4 (ENSAMEG00000019723) #33	COL10A1 (ENSAMEG00000013356) #35	NT5DC1 (ENSAMEG00000005670) #34	FRK (ENSAMEG00000013338) #36
Mustelinae	ANCESTRAL SPECIES	8	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.i.d	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT00390000007975.b	ENSGT00940000153544.a.h	ENSGT00910000144115.a	ENSGT00940000159918.a.b	ENSGT00940000160379	ENSGT00940000156194	ENSGT00940000153189.C	ENSGT00390000014270	ENSGT00940000162458	ENSGT00390000000020.a	ENSGT00940000161251
American mink	MODERN SPECIES	242	ENSNVIG00000019240	CEP85L (ENSNVIG00000019270) #7	PLN (ENSNVIG00000019322) #8	ENSNVIG00000019329	SLC35F1 (ENSNVIG00000019340) #10	NUS1 (ENSNVIG00000019365) #11	ENSNVIG00000019376	GOPC (ENSNVIG00000019395) #13	DCBLD1 (ENSNVIG00000019422) #14	ROS1 (ENSNVIG00000019446) #16	VGLL2 (ENSNVIG00000019523) #17	RFX6 (ENSNVIG00000019542) #18	GPRC6A (ENSNVIG00000019566) #19	FAM162B (ENSNVIG00000019603) #20	KPNA5 (ENSNVIG00000019616) #21	ZUP1 (ENSNVIG00000019669) #22	RSPH4A (ENSNVIG00000019709) #23
Ferret	MODERN SPECIES	166	ENSMPUG00000014381	CEP85L (ENSMPUG00000014374) #7	ENSMPUG00000014371	SLC35F1 (ENSMPUG00000014357) #10	ENSMPUG00000014352	NUS1 (ENSMPUG00000014339) #11	ENSMPUG00000014336	GOPC (ENSMPUG00000014330) #13	DCBLD1 (ENSMPUG00000014308) #14	ROS1 (ENSMPUG00000014298) #16	VGLL2 (ENSMPUG00000014293) #17	RFX6 (ENSMPUG00000014252) #18	GPRC6A (ENSMPUG00000014250) #19	FAM162B (ENSMPUG00000014247) #20	KPNA5 (ENSMPUG00000014242) #21	ZUP1 (ENSMPUG00000014237) #22	RSPH4A (ENSMPUG00000014235) #23	ENSMPUG00000014234	ENSMPUG00000014231	RWDD1 (ENSMPUG00000014229) #24	CALHM4 (ENSMPUG00000014228) #25	ENSMPUG00000014227	KCTD20 (ENSMPUG00000014225)	STK38 (ENSMPUG00000014223)	SRSF3 (ENSMPUG00000014215)	CDKN1A (ENSMPUG00000014214)	ENSMPUG00000014188	ENSMPUG00000014185	CPNE5 (ENSMPUG00000014182)	ENSMPUG00000014166	ENSMPUG00000014162
Canidae	ANCESTRAL SPECIES	34	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.i	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00390000012017.hb	ENSGT00390000012017.ib	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166
Canis_lupus	ANCESTRAL SPECIES		ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.i	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00390000012017.hb	ENSGT00390000012017.ib	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166
Dog	MODERN SPECIES		MCM9 (ENSCAFG00845007138)	PLN (ENSCAFG00845007035) #8	CEP85L (ENSCAFG00845006869) #7	ENSCAFG00845006816	SLC35F1 (ENSCAFG00845006677) #10	NUS1 (ENSCAFG00845006635) #11	NEPN (ENSCAFG00845006606)	GOPC (ENSCAFG00845006479) #13	DCBLD1 (ENSCAFG00845006335) #14	ROS1 (ENSCAFG00845006019) #16	VGLL2 (ENSCAFG00845005929) #17	RFX6 (ENSCAFG00845005871) #18	GPRC6A (ENSCAFG00845005820) #19	FAM162B (ENSCAFG00845005779) #20	KPNA5 (ENSCAFG00845005742) #21	ZUP1 (ENSCAFG00845005699) #22	RSPH4A (ENSCAFG00845005676) #23	ENSCAFG00845005641	RWDD1 (ENSCAFG00845005610) #24	CALHM4 (ENSCAFG00845005573) #25	CALHM5 (ENSCAFG00845005557) #27	TRAPPC3L (ENSCAFG00845005532) #26	CALHM6 (ENSCAFG00845005516) #28	DSE (ENSCAFG00845005500) #30	ENSCAFG00845005366	THBS2 (ENSCAFG00845005227)	SMOC2 (ENSCAFG00845005168)	DACT2 (ENSCAFG00845005143)	FRMD1 (ENSCAFG00845005116)	ENSCAFG00845005088	ENSCAFG00845004971
Dingo	MODERN SPECIES	125	ASF1A (ENSCAFG00020021489)	MCM9 (ENSCAFG00020021467)	PLN (ENSCAFG00020021458) #8	CEP85L (ENSCAFG00020021448) #7	SLC35F1 (ENSCAFG00020021437) #10	NUS1 (ENSCAFG00020021418) #11	ENSCAFG00020021416	GOPC (ENSCAFG00020021415) #13	DCBLD1 (ENSCAFG00020021412) #14	ROS1 (ENSCAFG00020021389) #16	VGLL2 (ENSCAFG00020021376) #17	RFX6 (ENSCAFG00020021362) #18	GPRC6A (ENSCAFG00020021358) #19	FAM162B (ENSCAFG00020021355) #20	KPNA5 (ENSCAFG00020021324) #21	ZUP1 (ENSCAFG00020021322) #22	RSPH4A (ENSCAFG00020021320) #23	ENSCAFG00020021315	ENSCAFG00020021310	RWDD1 (ENSCAFG00020021303) #24	ENSCAFG00020021302	CALHM5 (ENSCAFG00020021296) #27	TRAPPC3L (ENSCAFG00020021289) #26	CALHM6 (ENSCAFG00020021288) #28	DSE (ENSCAFG00020021286) #30	WDR27 (ENSCAFG00020021252)	THBS2 (ENSCAFG00020021212)	SMOC2 (ENSCAFG00020021152)	DACT2 (ENSCAFG00020021138)	KIF25 (ENSCAFG00020021134)	AFDN (ENSCAFG00020019469)
Red fox	MODERN SPECIES	40	CEP85L (ENSVVUG00000015771) #7	PLN (ENSVVUG00000015847) #8	ENSVVUG00000015858	SLC35F1 (ENSVVUG00000015872) #10	NUS1 (ENSVVUG00000015908) #11	ENSVVUG00000015913	GOPC (ENSVVUG00000015918) #13	DCBLD1 (ENSVVUG00000015933) #14	ROS1 (ENSVVUG00000015982) #16	VGLL2 (ENSVVUG00000016593) #17	ENSVVUG00000016599	RFX6 (ENSVVUG00000016613) #18	GPRC6A (ENSVVUG00000016663) #19	FAM162B (ENSVVUG00000016671) #20	KPNA5 (ENSVVUG00000016678) #21	ZUP1 (ENSVVUG00000016696) #22	RSPH4A (ENSVVUG00000016700) #23	ENSVVUG00000016705	ENSVVUG00000016707 #24	TRAPPC3L (ENSVVUG00000016711) #26	CALHM4 (ENSVVUG00000016718) #25	CALHM5 (ENSVVUG00000016720) #27	ENSVVUG00000016721	CALHM6 (ENSVVUG00000016722) #28	DSE (ENSVVUG00000016723) #30	ENSVVUG00000016732	ENSVVUG00000016751	ENSVVUG00000016767
Felidae	ANCESTRAL SPECIES	5	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.i.b	ENSGT00940000156772.i.a.a	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000166162	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000155676 #34	ENSGT00940000156987 #36
Panthera	ANCESTRAL SPECIES	7	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.i.b	ENSGT00940000156772.i.a.a	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000166162	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000155676 #34	ENSGT00940000156987 #36
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.i.b	ENSGT00940000156772.i.a.a	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000166162	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00960000188119	ENSGT00940000155676 #34	ENSGT00940000156987 #36
lion	MODERN SPECIES	5	ASF1A (ENSPLOG00000011905)	MCM9 (ENSPLOG00000011733)	PLN (ENSPLOG00000011698) #8	CEP85L (ENSPLOG00000011616) #7	SLC35F1 (ENSPLOG00000011485) #10	NUS1 (ENSPLOG00000011433) #11	ENSPLOG00000011382	GOPC (ENSPLOG00000011210) #13	DCBLD1 (ENSPLOG00000011135) #14	ROS1 (ENSPLOG00000011040) #16	VGLL2 (ENSPLOG00000010770) #17	RFX6 (ENSPLOG00000003852) #18	GPRC6A (ENSPLOG00000003804) #19	FAM162B (ENSPLOG00000003773) #20	KPNA5 (ENSPLOG00000003759) #21	ZUP1 (ENSPLOG00000003730) #22	RSPH4A (ENSPLOG00000003687) #23	ENSPLOG00000003653	RWDD1 (ENSPLOG00000003637) #24	CALHM4 (ENSPLOG00000003619) #25	CALHM5 (ENSPLOG00000003609) #27	TRAPPC3L (ENSPLOG00000003593) #26	CALHM6 (ENSPLOG00000003580) #28	DSE (ENSPLOG00000003558) #30	ENSPLOG00000003526	TSPYL4 (ENSPLOG00000003518) #33	COL10A1 (ENSPLOG00000003502) #35	ENSPLOG00000003489	NT5DC1 (ENSPLOG00000003475) #34	FRK (ENSPLOG00000003455) #36	HS3ST5 (ENSPLOG00000003442)
leopard	MODERN SPECIES	73	ASF1A (ENSPPRG00000023408)	MCM9 (ENSPPRG00000023166)	PLN (ENSPPRG00000021508) #8	CEP85L (ENSPPRG00000000205) #7	SLC35F1 (ENSPPRG00000000427) #10	NUS1 (ENSPPRG00000000572) #11	ENSPPRG00000000587	GOPC (ENSPPRG00000001061) #13	DCBLD1 (ENSPPRG00000001730) #14	ROS1 (ENSPPRG00000002853) #16	VGLL2 (ENSPPRG00000003064) #17	RFX6 (ENSPPRG00000003259) #18	GPRC6A (ENSPPRG00000003847) #19	FAM162B (ENSPPRG00000003907) #20	KPNA5 (ENSPPRG00000004424) #21	ZUP1 (ENSPPRG00000004517) #22	RSPH4A (ENSPPRG00000004695) #23	ENSPPRG00000005169
Tiger	MODERN SPECIES	120	MCM9 (ENSPTIG00000007411)	ASF1A (ENSPTIG00000008424)	CEP85L (ENSPTIG00000008858) #7	PLN (ENSPTIG00000006283) #8	SLC35F1 (ENSPTIG00000009914) #10	ENSPTIG00000010304 #11	ENSPTIG00000010605	GOPC (ENSPTIG00000010692) #13	DCBLD1 (ENSPTIG00000011183) #14	ROS1 (ENSPTIG00000011449) #16	ENSPTIG00000012308 #17	RFX6 (ENSPTIG00000012468) #18	GPRC6A (ENSPTIG00000013115) #19	FAM162B (ENSPTIG00000013420) #20	KPNA5 (ENSPTIG00000013503) #21	ZUP1 (ENSPTIG00000013533) #22	RSPH4A (ENSPTIG00000014297) #23	ENSPTIG00000014529	ENSPTIG00000014688	RWDD1 (ENSPTIG00000014973) #24	CALHM4 (ENSPTIG00000015112) #25	TRAPPC3L (ENSPTIG00000015246) #26	CALHM5 (ENSPTIG00000015346) #27	ENSPTIG00000015377 #28	DSE (ENSPTIG00000015410) #30	TSPYL4 (ENSPTIG00000006365) #33	NT5DC1 (ENSPTIG00000016386) #34	COL10A1 (ENSPTIG00000016999) #35	FRK (ENSPTIG00000017241) #36	HS3ST5 (ENSPTIG00000017379)	HDAC2 (ENSPTIG00000017437)
Cat	MODERN SPECIES	236	ASF1A (ENSFCAG00000035514)	MCM9 (ENSFCAG00000028710)	PLN (ENSFCAG00000005573) #8	CEP85L (ENSFCAG00000024766) #7	SLC35F1 (ENSFCAG00000031290) #10	NUS1 (ENSFCAG00000028875) #11	NEPN (ENSFCAG00000025529)	GOPC (ENSFCAG00000025564) #13	DCBLD1 (ENSFCAG00000013925) #14	ROS1 (ENSFCAG00000006448) #16	VGLL2 (ENSFCAG00000043286) #17	RFX6 (ENSFCAG00000018903) #18	GPRC6A (ENSFCAG00000044183) #19	FAM162B (ENSFCAG00000037427) #20	KPNA5 (ENSFCAG00000023588) #21	ZUP1 (ENSFCAG00000031494) #22	RSPH4A (ENSFCAG00000027641) #23	ENSFCAG00000052457	ENSFCAG00000047240	ENSFCAG00000034736	RWDD1 (ENSFCAG00000025905) #24	CALHM4 (ENSFCAG00000040211) #25	CALHM5 (ENSFCAG00000033745) #27	TRAPPC3L (ENSFCAG00000021987) #26	ENSFCAG00000029592 #28	DSE (ENSFCAG00000023622) #30	TSPYL4 (ENSFCAG00000013418) #33	COL10A1 (ENSFCAG00000040804) #35	NT5DC1 (ENSFCAG00000013415) #34	FRK (ENSFCAG00000004043) #36	HS3ST5 (ENSFCAG00000000523)
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT01010000228913	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991
Equus	ANCESTRAL SPECIES	29	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772.p.b	ENSGT00940000156772.p.a	ENSGT00940000156772.o	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT01010000228913	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34
Donkey	MODERN SPECIES	16	MCM9 (ENSEASG00005009172)	PLN (ENSEASG00005009167) #8	CEP85L (ENSEASG00005009156) #7	SLC35F1 (ENSEASG00005009146) #10	NUS1 (ENSEASG00005009141) #11	ENSEASG00005009139	GOPC (ENSEASG00005009135) #13	DCBLD1 (ENSEASG00005009128) #14	ROS1 (ENSEASG00005009099) #16	VGLL2 (ENSEASG00005009087) #17	ENSEASG00005037022	RFX6 (ENSEASG00005009070) #18	GPRC6A (ENSEASG00005009064) #19	FAM162B (ENSEASG00005034252) #20	KPNA5 (ENSEASG00005009059) #21	ZUP1 (ENSEASG00005009054) #22	RSPH4A (ENSEASG00005009050) #23	ENSEASG00005009048	ENSEASG00005028545	ENSEASG00005031003	ENSEASG00005008382	RWDD1 (ENSEASG00005008380) #24	CALHM4 (ENSEASG00005008379) #25	CALHM5 (ENSEASG00005008378) #27	TRAPPC3L (ENSEASG00005029591) #26	ENSEASG00005008375 #28	DSE (ENSEASG00005008373) #30	TSPYL1 (ENSEASG00005032253) #32	TSPYL4 (ENSEASG00005008371) #33	COL10A1 (ENSEASG00005008370) #35	NT5DC1 (ENSEASG00005008369) #34
Horse	MODERN SPECIES	1	ASF1A (ENSECAG00000014665)	MCM9 (ENSECAG00000014548)	PLN (ENSECAG00000036379) #8	CEP85L (ENSECAG00000012601) #7	SLC35F1 (ENSECAG00000011313) #10	NUS1 (ENSECAG00000010823) #11	NEPN (ENSECAG00000010804)	GOPC (ENSECAG00000009566) #13	DCBLD1 (ENSECAG00000007808) #14	VGLL2 (ENSECAG00000022074) #17	ROS1 (ENSECAG00000023669) #16	RFX6 (ENSECAG00000019804) #18	GPRC6A (ENSECAG00000019182) #19	FAM162B (ENSECAG00000019150) #20	KPNA5 (ENSECAG00000014734) #21	ZUP1 (ENSECAG00000013523) #22	RSPH4A (ENSECAG00000012533) #23	ENSECAG00000044333	ENSECAG00000010770	ENSECAG00000051393	RWDD1 (ENSECAG00000006587) #24	CALHM4 (ENSECAG00000000714) #25	CALHM5 (ENSECAG00000023268) #27	TRAPPC3L (ENSECAG00000021978) #26	ENSECAG00000051818	ENSECAG00000021708 #28	DSE (ENSECAG00000020975) #30	ENSECAG00000031694	TSPYL4 (ENSECAG00000030611) #33	TSPYL1 (ENSECAG00000003736) #32	COL10A1 (ENSECAG00000020826) #35
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00390000002403 #8	ENSGT00620000087993.a.a #7	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000155676 #34	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725
Greater horseshoe bat	MODERN SPECIES	21	MCM9 (ENSRFEG00010019411)	ENSRFEG00010019370	PLN (ENSRFEG00010019359) #8	CEP85L (ENSRFEG00010019296) #7	SLC35F1 (ENSRFEG00010019218) #10	NUS1 (ENSRFEG00010019153) #11	ENSRFEG00010019124	GOPC (ENSRFEG00010019030) #13	DCBLD1 (ENSRFEG00010018940) #14	ENSRFEG00010018893	ROS1 (ENSRFEG00010018524) #16	VGLL2 (ENSRFEG00010018446) #17	RFX6 (ENSRFEG00010018276) #18	FAM162B (ENSRFEG00010018217) #20	KPNA5 (ENSRFEG00010018178) #21	ZUP1 (ENSRFEG00010018008) #22	RSPH4A (ENSRFEG00010017838) #23	ENSRFEG00010017801	ENSRFEG00010017788	ENSRFEG00010017720	ENSRFEG00010017650 #24	CALHM4 (ENSRFEG00010017600) #25	CALHM5 (ENSRFEG00010017554) #27	TRAPPC3L (ENSRFEG00010017466) #26	CALHM6 (ENSRFEG00010017443) #28	DSE (ENSRFEG00010017346) #30	COL10A1 (ENSRFEG00010017207) #35	NT5DC1 (ENSRFEG00010017166) #34	FRK (ENSRFEG00010017139) #36	ENSRFEG00010017121	HS3ST5 (ENSRFEG00010017069)
Microbat	MODERN SPECIES	994	ENSMLUG00000013053	MCM9 (ENSMLUG00000013047)	PLN (ENSMLUG00000017551) #8	CEP85L (ENSMLUG00000017550) #7	SLC35F1 (ENSMLUG00000007580) #10	NUS1 (ENSMLUG00000007566) #11	ENSMLUG00000024056	GOPC (ENSMLUG00000007543) #13	DCBLD1 (ENSMLUG00000007533) #14	ROS1 (ENSMLUG00000007568) #16	VGLL2 (ENSMLUG00000022632) #17	RFX6 (ENSMLUG00000006665) #18	GPRC6A (ENSMLUG00000010115) #19	FAM162B (ENSMLUG00000010100) #20	KPNA5 (ENSMLUG00000010070) #21	ZUP1 (ENSMLUG00000015906) #22	RSPH4A (ENSMLUG00000015892) #23	ENSMLUG00000029713	ENSMLUG00000030160	ENSMLUG00000028869	ENSMLUG00000024652	RWDD1 (ENSMLUG00000030427) #24	CALHM4 (ENSMLUG00000011357) #25	CALHM5 (ENSMLUG00000029405) #27	TRAPPC3L (ENSMLUG00000002941) #26	CALHM6 (ENSMLUG00000002931) #28	DSE (ENSMLUG00000002926) #30	TSPYL1 (ENSMLUG00000008370) #32	TSPYL4 (ENSMLUG00000015727) #33	COL10A1 (ENSMLUG00000008338) #35	ENSMLUG00000008313 #34
Megabat	MODERN SPECIES	8580																ZUP1 (ENSPVAG00000004561) #22	ENSPVAG00000004555 #23
Eulipotyphla	ANCESTRAL SPECIES	777														ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22
Common shrew	MODERN SPECIES	3766														FAM162B (ENSSARG00000010032) #20	KPNA5 (ENSSARG00000010023) #21	ENSSARG00000010011 #22
Hedgehog	MODERN SPECIES	4875																ZUP1 (ENSEEUG00000008132) #22
Atlantogenata	ANCESTRAL SPECIES	3	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725	ENSGT00730000111419
Afrotheria	ANCESTRAL SPECIES	13	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725	ENSGT00940000163194	ENSGT00940000159970
Afrotheria_a	ANCESTRAL SPECIES	13	ENSGT01090000260080.b.a	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a #7	ENSGT00390000002403 #8	ENSGT00390000015655.b #10	ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00940000156772	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT00390000003880.b.b #26	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162991 #33	ENSGT00940000154317.a.b #35	ENSGT00940000156987 #36	ENSGT00940000158991	ENSGT00940000155725	ENSGT00940000163194	ENSGT00940000159970
Elephant	MODERN SPECIES	1	MCM9 (ENSLAFG00000013902)	ASF1A (ENSLAFG00000013912)	ENSLAFG00000014839 #7	PLN (ENSLAFG00000014849) #8	SLC35F1 (ENSLAFG00000006145) #10	NUS1 (ENSLAFG00000016764) #11	ENSLAFG00000025930	GOPC (ENSLAFG00000007801) #13	DCBLD1 (ENSLAFG00000009399) #14	ROS1 (ENSLAFG00000009804) #16	VGLL2 (ENSLAFG00000009803) #17	RFX6 (ENSLAFG00000003465) #18	GPRC6A (ENSLAFG00000003462) #19	FAM162B (ENSLAFG00000003827) #20	KPNA5 (ENSLAFG00000003824) #21	ZUP1 (ENSLAFG00000017345) #22	RSPH4A (ENSLAFG00000003514) #23	ENSLAFG00000028750	ENSLAFG00000026707	ENSLAFG00000008170 #24	CALHM4 (ENSLAFG00000027569) #25	TRAPPC3L (ENSLAFG00000008487) #26	CALHM5 (ENSLAFG00000008490) #27	ENSLAFG00000017416 #28	ENSLAFG00000012702 #28	DSE (ENSLAFG00000009134) #30	ENSLAFG00000027418	TSPYL4 (ENSLAFG00000010254) #33	COL10A1 (ENSLAFG00000022123) #35	FRK (ENSLAFG00000005589) #36	HS3ST5 (ENSLAFG00000010686)
Hyrax	MODERN SPECIES	1032																ZUP1 (ENSPCAG00000004208) #22	ENSPCAG00000004184	RSPH4A (ENSPCAG00000004106) #23
Tenrec	MODERN SPECIES	7454															KPNA5 (ENSETEG00000015960) #21	ZUP1 (ENSETEG00000015958) #22	RSPH4A (ENSETEG00000015955) #23
Xenarthra	ANCESTRAL SPECIES	168						ENSGT00390000003223 #11	ENSGT00940000162914	ENSGT00940000156535 #13	ENSGT00940000157334 #14	ENSGT00940000160831 #16	ENSGT00530000063353.a.b.a #17	ENSGT01050000244879.b.a.b.b #18	ENSGT00940000158416 #19	ENSGT00640000091497.b #20	ENSGT01050000244950.a.a.b #21	ENSGT00390000008232 #22	ENSGT00500000044869.a.a #23	ENSGT00390000009168 #24	ENSGT01030000234610.b.b #25	ENSGT01030000234610.a.b #27	ENSGT01030000234610.a.a #28	ENSGT00390000006522.b #30	ENSGT00940000162821 #32	ENSGT00940000162991 #33
Sloth	MODERN SPECIES	4331																ZUP1 (ENSCHOG00000001173) #22
Armadillo	MODERN SPECIES	2810					ENSDNOG00000036113	ENSDNOG00000001780 #11	ENSDNOG00000044655	GOPC (ENSDNOG00000039802) #13	DCBLD1 (ENSDNOG00000012574) #14	ROS1 (ENSDNOG00000010519) #16	VGLL2 (ENSDNOG00000044127) #17	RFX6 (ENSDNOG00000019162) #18	GPRC6A (ENSDNOG00000019148) #19	FAM162B (ENSDNOG00000038676) #20	KPNA5 (ENSDNOG00000005326) #21	ZUP1 (ENSDNOG00000044598) #22	RSPH4A (ENSDNOG00000001347) #23	ENSDNOG00000025447	ENSDNOG00000038517	ENSDNOG00000039401	ENSDNOG00000044348	ENSDNOG00000007516 #24	CALHM4 (ENSDNOG00000007514) #25	CALHM5 (ENSDNOG00000036788) #27	ENSDNOG00000045345 #28	DSE (ENSDNOG00000045714) #30	ENSDNOG00000046391	ENSDNOG00000039632 #32	TSPYL4 (ENSDNOG00000042279) #33	ENSDNOG00000030677	ENSDNOG00000007860