Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432
Glires	ANCESTRAL SPECIES	13	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432
Rodentia	ANCESTRAL SPECIES	15	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.cb
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.cb
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005023387 #7	FKBP1B (ENSSVLG00005023436) #8	WDCP (ENSSVLG00005023512) #9	MFSD2B (ENSSVLG00005023554) #10	ENSSVLG00005023695 #11	ATAD2B (ENSSVLG00005023756) #12	KLHL29 (ENSSVLG00005023916) #13	TDRD15 (ENSSVLG00005023954) #14	APOB (ENSSVLG00005023994) #15	LDAH (ENSSVLG00005024216) #16	GDF7 (ENSSVLG00005024288) #17	HS1BP3 (ENSSVLG00005024304) #18	RHOB (ENSSVLG00005024328) #19	ENSSVLG00005024370 #20	ENSSVLG00005024506 #21	SDC1 (ENSSVLG00005024647) #22	LAPTM4A (ENSSVLG00005024670) #23	MATN3 (ENSSVLG00005024711) #24	WDR35 (ENSSVLG00005024826) #25	TTC32 (ENSSVLG00005024889) #26	OSR1 (ENSSVLG00005024914) #27	NT5C1B (ENSSVLG00005025002) #28	RDH14 (ENSSVLG00005025062) #29	ENSSVLG00005025079 #30	KCNS3 (ENSSVLG00005025089) #31	MSGN1 (ENSSVLG00005025107) #32	GEN1 (ENSSVLG00005025123) #33	SMC6 (ENSSVLG00005025164) #34	VSNL1 (ENSSVLG00005025182) #35	RAD51AP2 (ENSSVLG00005025196) #36	ENSSVLG00005025209 #37
Marmotini	ANCESTRAL SPECIES	14	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a.u.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.cb
Marmotini_b	ANCESTRAL SPECIES	17	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a.u.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.cb
Squirrel	MODERN SPECIES	93	WDCP (ENSSTOG00000032257) #9	MFSD2B (ENSSTOG00000003123) #10	UBXN2A (ENSSTOG00000030412) #11	ATAD2B (ENSSTOG00000021066) #12	KLHL29 (ENSSTOG00000008403) #13	ENSSTOG00000033132 #23	TDRD15 (ENSSTOG00000027567) #14	APOB (ENSSTOG00000027598) #15	LDAH (ENSSTOG00000026882) #16	GDF7 (ENSSTOG00000027110) #17	HS1BP3 (ENSSTOG00000004973) #18	ENSSTOG00000014644 #19	ENSSTOG00000023326 #20	PUM2 (ENSSTOG00000006262) #21	ENSSTOG00000033291	SDC1 (ENSSTOG00000028519) #22	ENSSTOG00000007214 #23	MATN3 (ENSSTOG00000019530) #24	WDR35 (ENSSTOG00000007151) #25	TTC32 (ENSSTOG00000007140) #26	OSR1 (ENSSTOG00000015454) #27	NT5C1B (ENSSTOG00000014834) #28	RDH14 (ENSSTOG00000021114) #29	KCNS3 (ENSSTOG00000012420) #31	MSGN1 (ENSSTOG00000013981) #32	GEN1 (ENSSTOG00000013963) #33	SMC6 (ENSSTOG00000013946) #34	VSNL1 (ENSSTOG00000010438) #35	ENSSTOG00000025212 #36	CYRIA (ENSSTOG00000022187)	MYCN (ENSSTOG00000012252)
Arctic ground squirrel	MODERN SPECIES		UBXN2A (ENSUPAG00010008734) #11	ATAD2B (ENSUPAG00010008759) #12	KLHL29 (ENSUPAG00010008812) #13	ENSUPAG00010008883	TDRD15 (ENSUPAG00010008953) #14	APOB (ENSUPAG00010008961) #15	LDAH (ENSUPAG00010009007) #16	ENSUPAG00010009042 #17	ENSUPAG00010009055 #17	HS1BP3 (ENSUPAG00010009063) #18	RHOB (ENSUPAG00010009084) #19	ENSUPAG00010009092 #20	PUM2 (ENSUPAG00010009123) #21	ENSUPAG00010009301	ENSUPAG00010009303	SDC1 (ENSUPAG00010009310) #22	LAPTM4A (ENSUPAG00010009333) #23	MATN3 (ENSUPAG00010009339) #24	WDR35 (ENSUPAG00010009354) #25	TTC32 (ENSUPAG00010009436) #26	OSR1 (ENSUPAG00010009451) #27	ENSUPAG00010009474 #28	RDH14 (ENSUPAG00010009546) #29	MSGN1 (ENSUPAG00010009556) #32	GEN1 (ENSUPAG00010009557) #33	SMC6 (ENSUPAG00010009564) #34	VSNL1 (ENSUPAG00010009655) #35	RAD51AP2 (ENSUPAG00010009663) #36	CYRIA (ENSUPAG00010009668)	MYCN (ENSUPAG00010009702)	ENSUPAG00010009708
Alpin marmot	MODERN SPECIES	6	FKBP1B (ENSMMMG00000021830) #8	WDCP (ENSMMMG00000021855) #9	MFSD2B (ENSMMMG00000021873) #10	ENSMMMG00000021893	ATAD2B (ENSMMMG00000021898) #12	KLHL29 (ENSMMMG00000022005) #13	TDRD15 (ENSMMMG00000022048) #14	ENSMMMG00000022049 #15	ENSMMMG00000022059 #15	LDAH (ENSMMMG00000022060) #16	HS1BP3 (ENSMMMG00000022083) #18	RHOB (ENSMMMG00000022086) #19	ENSMMMG00000022089 #20	PUM2 (ENSMMMG00000022116) #21	ENSMMMG00000022129	SDC1 (ENSMMMG00000022131) #22	LAPTM4A (ENSMMMG00000022160) #23	MATN3 (ENSMMMG00000022186) #24	WDR35 (ENSMMMG00000022195) #25	TTC32 (ENSMMMG00000022212) #26	OSR1 (ENSMMMG00000022239) #27	ENSMMMG00000022251 #28	RDH14 (ENSMMMG00000022280) #29	KCNS3 (ENSMMMG00000022292) #31	MSGN1 (ENSMMMG00000022303) #32	GEN1 (ENSMMMG00000022304) #33	SMC6 (ENSMMMG00000022309) #34	VSNL1 (ENSMMMG00000022330) #35	RAD51AP2 (ENSMMMG00000022347) #36	CYRIA (ENSMMMG00000022371)	ENSMMMG00000022385
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.h.a ##10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35
Hystricomorpha_a	ANCESTRAL SPECIES	31	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35
Guinea pig	MODERN SPECIES	18	FAM228B (ENSCPOG00000030306)	PFN4 (ENSCPOG00000009683)	SF3B6 (ENSCPOG00000008016) #7	FKBP1B (ENSCPOG00000039379) #8	WDCP (ENSCPOG00000019263) #9	MFSD2B (ENSCPOG00000022662) ##10	UBXN2A (ENSCPOG00000038294) #11	ATAD2B (ENSCPOG00000014176) #12	KLHL29 (ENSCPOG00000014174) #13	APOB (ENSCPOG00000004931) #15	LDAH (ENSCPOG00000012586) #16	HS1BP3 (ENSCPOG00000000278) #18	ENSCPOG00000037907 #20	PUM2 (ENSCPOG00000031996) #21	ENSCPOG00000007075	SDC1 (ENSCPOG00000008875) #22	LAPTM4A (ENSCPOG00000009690) #23	MATN3 (ENSCPOG00000004739) #24	WDR35 (ENSCPOG00000007053) #25	TTC32 (ENSCPOG00000033658) #26	OSR1 (ENSCPOG00000002025) #27	NT5C1B (ENSCPOG00000012761) #28	RDH14 (ENSCPOG00000022651) #29	KCNS3 (ENSCPOG00000009232) #31	MSGN1 (ENSCPOG00000003061) #32	GEN1 (ENSCPOG00000033894) #33	SMC6 (ENSCPOG00000014752) #34	VSNL1 (ENSCPOG00000030283) #35
Hystricomorpha_b	ANCESTRAL SPECIES	26	ENSGT00390000017067	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35
Long-tailed chinchilla	MODERN SPECIES	176	FAM228B (ENSCLAG00000004984)	PFN4 (ENSCLAG00000004618)	SF3B6 (ENSCLAG00000014512) #7	FKBP1B (ENSCLAG00000011181) #8	WDCP (ENSCLAG00000008275) #9	MFSD2B (ENSCLAG00000014189) #10	UBXN2A (ENSCLAG00000014610) #11	ATAD2B (ENSCLAG00000005215) #12	KLHL29 (ENSCLAG00000005598) #13	APOB (ENSCLAG00000008056) #15	LDAH (ENSCLAG00000011308) #16	HS1BP3 (ENSCLAG00000008832) #18	RHOB (ENSCLAG00000017801) #19	ENSCLAG00000005814 #20	PUM2 (ENSCLAG00000006048) #21	SDC1 (ENSCLAG00000007345) #22	LAPTM4A (ENSCLAG00000006983) #23	MATN3 (ENSCLAG00000006019) #24	WDR35 (ENSCLAG00000007929) #25	TTC32 (ENSCLAG00000009839) #26	OSR1 (ENSCLAG00000009423) #27	NT5C1B (ENSCLAG00000008659) #28	RDH14 (ENSCLAG00000009341) #29	KCNS3 (ENSCLAG00000013937) #31	MSGN1 (ENSCLAG00000015119) #32	GEN1 (ENSCLAG00000008865) #33	SMC6 (ENSCLAG00000012919) #34	VSNL1 (ENSCLAG00000011222) #35	ENSCLAG00000013272
Degu	MODERN SPECIES	60	ENSODEG00000009834 #12	ENSODEG00000008786	KLHL29 (ENSODEG00000009928) #13	ENSODEG00000007428	ENSODEG00000019450	ENSODEG00000007994	ENSODEG00000019494	APOB (ENSODEG00000008337) #15	ENSODEG00000008523 #16	GDF7 (ENSODEG00000008847) #17	HS1BP3 (ENSODEG00000010003) #18	RHOB (ENSODEG00000019841) #19	ENSODEG00000010362 #20	PUM2 (ENSODEG00000007823) #21	ENSODEG00000008774	SDC1 (ENSODEG00000010758) #22	LAPTM4A (ENSODEG00000008579) #23	MATN3 (ENSODEG00000008451) #24	WDR35 (ENSODEG00000012693) #25	TTC32 (ENSODEG00000009280) #26	OSR1 (ENSODEG00000008728) #27	NT5C1B (ENSODEG00000008929) #28	RDH14 (ENSODEG00000008458) #29	KCNS3 (ENSODEG00000009066) #31	ENSODEG00000019755	MSGN1 (ENSODEG00000009615) #32	GEN1 (ENSODEG00000010156) #33	SMC6 (ENSODEG00000008987) #34	VSNL1 (ENSODEG00000008555) #35	ENSODEG00000008159	SLC10A4 (ENSODEG00000010331)
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Myomorpha	ANCESTRAL SPECIES	24	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Muroidea	ANCESTRAL SPECIES	21	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Muroidea_A	ANCESTRAL SPECIES	24	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Cricetidae	ANCESTRAL SPECIES	24	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Cricetinae	ANCESTRAL SPECIES		ENSGT00390000017067	ENSGT00940000161217	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00590000083139 #15	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Chinese hamster chok1gshd	MODERN SPECIES	229	Wdcp (ENSCGRG00001019012) #9	Mfsd2b (ENSCGRG00001024664) #10	Ubxn2a (ENSCGRG00001007449) #11	Atad2b (ENSCGRG00001016996) #12	ENSCGRG00001012412	Klhl29 (ENSCGRG00001018377) #13	ENSCGRG00001024957	ENSCGRG00001024983	Apob (ENSCGRG00001009990) #15	Gdf7 (ENSCGRG00001002115) #17	ENSCGRG00001012418 #16	Hs1bp3 (ENSCGRG00001015945) #18	Rhob (ENSCGRG00001001843) #19	Slc7a15 (ENSCGRG00001018113) #20	Pum2 (ENSCGRG00001025023) #21	SDC1 (ENSCGRG00001018173) #22	Laptm4a (ENSCGRG00001021474) #23	Matn3 (ENSCGRG00001025049) #24	Wdr35 (ENSCGRG00001004220) #25	Ttc32 (ENSCGRG00001007763) #26	Osr1 (ENSCGRG00001009653) #27	Nt5c1b (ENSCGRG00001016775) #28	Rdh14 (ENSCGRG00001024177) #29	ENSCGRG00001006912	Kcns3 (ENSCGRG00001004289) #31	Msgn1 (ENSCGRG00001003369) #32	ENSCGRG00001019699 #33	Smc6 (ENSCGRG00001024287) #34	Vsnl1 (ENSCGRG00001017035) #35	ENSCGRG00001012128	Cyria (ENSCGRG00001014064)
Golden Hamster	MODERN SPECIES	705	Fam228a (ENSMAUG00000019010)	Fam228b (ENSMAUG00000017259)	ENSMAUG00000004078	ENSMAUG00000000586 #7	Fkbp1b (ENSMAUG00000016519) #8	Wdcp (ENSMAUG00000013564) #9	Ubxn2a (ENSMAUG00000013894) #11	ENSMAUG00000016676 #12	Klhl29 (ENSMAUG00000015607) #13	Apob (ENSMAUG00000010835) #15	Gdf7 (ENSMAUG00000011905) #17	Hs1bp3 (ENSMAUG00000010929) #18	Rhob (ENSMAUG00000016245) #19	Slc7a15 (ENSMAUG00000008328) #20	Pum2 (ENSMAUG00000000311) #21	Sdc1 (ENSMAUG00000007825) #22	Laptm4a (ENSMAUG00000002092) #23	Matn3 (ENSMAUG00000000731) #24	Wdr35 (ENSMAUG00000017485) #25	Ttc32 (ENSMAUG00000018447) #26	Osr1 (ENSMAUG00000008188) #27	Nt5c1b (ENSMAUG00000018395) #28	Rdh14 (ENSMAUG00000016192) #29	Kcns3 (ENSMAUG00000017875) #31	Msgn1 (ENSMAUG00000016000) #32	Smc6 (ENSMAUG00000016007) #34	Vsnl1 (ENSMAUG00000014300) #35	Rad51ap2 (ENSMAUG00000015167) #36	ENSMAUG00000000527	Cyria (ENSMAUG00000000089)	Mycn (ENSMAUG00000017079)
Cricetidae_B	ANCESTRAL SPECIES	43	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Prairie vole	MODERN SPECIES	353	Wdcp (ENSMOCG00000013612) #9	Mfsd2b (ENSMOCG00000012318) #10	Ubxn2a (ENSMOCG00000020669) #11	Atad2b (ENSMOCG00000000408) #12	Klhl29 (ENSMOCG00000007430) #13	ENSMOCG00000012724	ENSMOCG00000013271	ENSMOCG00000002216	Apob (ENSMOCG00000021753) #15	Gdf7 (ENSMOCG00000010905) #17	ENSMOCG00000021323	Hs1bp3 (ENSMOCG00000022226) #18	Rhob (ENSMOCG00000007966) #19	Slc7a15 (ENSMOCG00000003687) #20	Pum2 (ENSMOCG00000013663) #21	Sdc1 (ENSMOCG00000019532) #22	ENSMOCG00000012688	Laptm4a (ENSMOCG00000013181) #23	Matn3 (ENSMOCG00000013872) #24	Wdr35 (ENSMOCG00000001393) #25	Ttc32 (ENSMOCG00000021911) #26	ENSMOCG00000007598	Osr1 (ENSMOCG00000012793) #27	ENSMOCG00000013225	Nt5c1b (ENSMOCG00000020580) #28	Rdh14 (ENSMOCG00000005865) #29	Kcns3 (ENSMOCG00000007505) #31	Tacstd2 (ENSMOCG00000008197)	Il23r (ENSMOCG00000010821)	Il12rb2 (ENSMOCG00000022701)	Serbp1 (ENSMOCG00000015573)
Northern American deer mouse	MODERN SPECIES	14	Fkbp1b (ENSPEMG00000028047) #8	Wdcp (ENSPEMG00000011326) #9	Mfsd2b (ENSPEMG00000014144) #10	ENSPEMG00000017582 #11	Atad2b (ENSPEMG00000010515) #12	ENSPEMG00000025296	Klhl29 (ENSPEMG00000012938) #13	ENSPEMG00000029395 #14	Apob (ENSPEMG00000018913) #15	ENSPEMG00000019039 #16	Hs1bp3 (ENSPEMG00000001400) #18	Rhob (ENSPEMG00000013485) #19	Slc7a15 (ENSPEMG00000009942) #20	Pum2 (ENSPEMG00000008357) #21	ENSPEMG00000024635	Sdc1 (ENSPEMG00000010998) #22	Laptm4a (ENSPEMG00000015789) #23	Matn3 (ENSPEMG00000017106) #24	Wdr35 (ENSPEMG00000004790) #25	Ttc32 (ENSPEMG00000027871) #26	Osr1 (ENSPEMG00000008344) #27	Nt5c1b (ENSPEMG00000013187) #28	Rdh14 (ENSPEMG00000018416) #29	ENSPEMG00000000184	ENSPEMG00000025389	Kcns3 (ENSPEMG00000011462) #31	ENSPEMG00000007987	Msgn1 (ENSPEMG00000007522) #32	Gen1 (ENSPEMG00000001855) #33	ENSPEMG00000024461 #34	Vsnl1 (ENSPEMG00000028838) #35
Murinae	ANCESTRAL SPECIES	8	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Mus	ANCESTRAL SPECIES	10	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Mus_A	ANCESTRAL SPECIES	17	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Mus_B	ANCESTRAL SPECIES	17	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Mouse	MODERN SPECIES	3	Pfn4 (ENSMUSG00000020639)	Sf3b6 (ENSMUSG00000037361) #7	Fkbp1b (ENSMUSG00000020635) #8	Wdcp (ENSMUSG00000051721) #9	Mfsd2b (ENSMUSG00000037336) #10	Ubxn2a (ENSMUSG00000020634) #11	Atad2b (ENSMUSG00000052812) #12	Klhl29 (ENSMUSG00000020627) #13	Apob (ENSMUSG00000020609) #15	Ldah (ENSMUSG00000037669) #16	Gdf7 (ENSMUSG00000037660) #17	Hs1bp3 (ENSMUSG00000020605) #18	Rhob (ENSMUSG00000054364) #19	Slc7a15 (ENSMUSG00000020600) #20	Pum2 (ENSMUSG00000020594) #21	Sdc1 (ENSMUSG00000020592) #22	Laptm4a (ENSMUSG00000020585) #23	Matn3 (ENSMUSG00000020583) #24	Wdr35 (ENSMUSG00000066643) #25	Ttc32 (ENSMUSG00000066637) #26	Osr1 (ENSMUSG00000048387) #27	Nt5c1b (ENSMUSG00000020622) #28	Rdh14 (ENSMUSG00000020621) #29	Kcns3 (ENSMUSG00000043673) #31	Msgn1 (ENSMUSG00000047002) #32	Gen1 (ENSMUSG00000051235) #33	Smc6 (ENSMUSG00000020608) #34	Vsnl1 (ENSMUSG00000054459) #35	Rad51ap2 (ENSMUSG00000086022) #36	Cyria (ENSMUSG00000020589)	Mycn (ENSMUSG00000037169)
Mus_C	ANCESTRAL SPECIES	11	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.g #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432.bb.a
Steppe mouse	MODERN SPECIES	68															Pum2 (ENSMSIG00000004171) #21	Sdc1 (ENSMSIG00000004134) #22	ENSMSIG00000004066 #23	Matn3 (ENSMSIG00000004029) #24	Wdr35 (ENSMSIG00000003728) #25	Ttc32 (ENSMSIG00000003695) #26	ENSMSIG00000003661
spretus	MODERN SPECIES	3	Pfn4 (MGP_SPRETEiJ_G0018433)	Sf3b6 (MGP_SPRETEiJ_G0018434) #7	Fkbp1b (MGP_SPRETEiJ_G0018435) #8	Wdcp (MGP_SPRETEiJ_G0018436) #9	Mfsd2b (MGP_SPRETEiJ_G0018437) #10	Ubxn2a (MGP_SPRETEiJ_G0018438) #11	Atad2b (MGP_SPRETEiJ_G0018439) #12	Klhl29 (MGP_SPRETEiJ_G0018440) #13	Apob (MGP_SPRETEiJ_G0018441) #15	Ldah (MGP_SPRETEiJ_G0018442) #16	Gdf7 (MGP_SPRETEiJ_G0018443) #17	Hs1bp3 (MGP_SPRETEiJ_G0018444) #18	Rhob (MGP_SPRETEiJ_G0018445) #19	Slc7a15 (MGP_SPRETEiJ_G0018446) #20	Pum2 (MGP_SPRETEiJ_G0018447) #21	Sdc1 (MGP_SPRETEiJ_G0018448) #22	MGP_SPRETEiJ_G0018449 #23	Matn3 (MGP_SPRETEiJ_G0018450) #24	Wdr35 (MGP_SPRETEiJ_G0018451) #25	Ttc32 (MGP_SPRETEiJ_G0018452) #26	Osr1 (MGP_SPRETEiJ_G0018453) #27	Nt5c1b (MGP_SPRETEiJ_G0018454) #28	Rdh14 (MGP_SPRETEiJ_G0018455) #29	Kcns3 (MGP_SPRETEiJ_G0018456) #31	Msgn1 (MGP_SPRETEiJ_G0018457) #32	Gen1 (MGP_SPRETEiJ_G0018458) #33	Smc6 (MGP_SPRETEiJ_G0018459) #34	Vsnl1 (MGP_SPRETEiJ_G0018460) #35	Rad51ap2 (MGP_SPRETEiJ_G0018461) #36	Cyria (MGP_SPRETEiJ_G0018462)	Mycn (MGP_SPRETEiJ_G0018463)
Ryukyu mouse	MODERN SPECIES	3	Pfn4 (MGP_CAROLIEiJ_G0017589)	Sf3b6 (MGP_CAROLIEiJ_G0017590) #7	Fkbp1b (MGP_CAROLIEiJ_G0017591) #8	Wdcp (MGP_CAROLIEiJ_G0017592) #9	Mfsd2b (MGP_CAROLIEiJ_G0017593) #10	MGP_CAROLIEiJ_G0017594 #11	MGP_CAROLIEiJ_G0017595 #12	Klhl29 (MGP_CAROLIEiJ_G0017596) #13	Apob (MGP_CAROLIEiJ_G0017597) #15	Ldah (MGP_CAROLIEiJ_G0017598) #16	Gdf7 (MGP_CAROLIEiJ_G0017599) #17	Hs1bp3 (MGP_CAROLIEiJ_G0017600) #18	Rhob (MGP_CAROLIEiJ_G0017601) #19	Slc7a15 (MGP_CAROLIEiJ_G0017602) #20	Pum2 (MGP_CAROLIEiJ_G0017603) #21	Sdc1 (MGP_CAROLIEiJ_G0017604) #22	MGP_CAROLIEiJ_G0017605 #23	Matn3 (MGP_CAROLIEiJ_G0017606) #24	Wdr35 (MGP_CAROLIEiJ_G0017607) #25	Ttc32 (MGP_CAROLIEiJ_G0017608) #26	Osr1 (MGP_CAROLIEiJ_G0017609) #27	Nt5c1b (MGP_CAROLIEiJ_G0017610) #28	Rdh14 (MGP_CAROLIEiJ_G0017611) #29	Kcns3 (MGP_CAROLIEiJ_G0017612) #31	Vmn1r200 (MGP_CAROLIEiJ_G0017613)	MGP_CAROLIEiJ_G0017614	Msgn1 (MGP_CAROLIEiJ_G0017615) #32	Gen1 (MGP_CAROLIEiJ_G0017616) #33	Smc6 (MGP_CAROLIEiJ_G0017617) #34	Vsnl1 (MGP_CAROLIEiJ_G0017618) #35	Rad51ap2 (MGP_CAROLIEiJ_G0017619) #36
Shrew mouse	MODERN SPECIES	20	Pfn4 (MGP_PahariEiJ_G0029347)	Sf3b6 (MGP_PahariEiJ_G0029348) #7	Fkbp1b (MGP_PahariEiJ_G0029349) #8	Wdcp (MGP_PahariEiJ_G0029350) #9	Mfsd2b (MGP_PahariEiJ_G0029351) #10	Ubxn2a (MGP_PahariEiJ_G0029352) #11	Atad2b (MGP_PahariEiJ_G0029353) #12	Klhl29 (MGP_PahariEiJ_G0029354) #13	Apob (MGP_PahariEiJ_G0029355) #15	Ldah (MGP_PahariEiJ_G0029356) #16	Gdf7 (MGP_PahariEiJ_G0029357) #17	Hs1bp3 (MGP_PahariEiJ_G0029358) #18	Rhob (MGP_PahariEiJ_G0029359) #19	Slc7a15 (MGP_PahariEiJ_G0029360) #20	Pum2 (MGP_PahariEiJ_G0029361) #21	Sdc1 (MGP_PahariEiJ_G0029362) #22	MGP_PahariEiJ_G0029363 #23	Matn3 (MGP_PahariEiJ_G0029364) #24	Wdr35 (MGP_PahariEiJ_G0029365) #25	Ttc32 (MGP_PahariEiJ_G0029366) #26	Osr1 (MGP_PahariEiJ_G0029367) #27	Nt5c1b (MGP_PahariEiJ_G0029368) #28	Rdh14 (MGP_PahariEiJ_G0029369) #29	Kcns3 (MGP_PahariEiJ_G0029370) #31	Msgn1 (MGP_PahariEiJ_G0029371) #32	Gen1 (MGP_PahariEiJ_G0029372) #33	Smc6 (MGP_PahariEiJ_G0029373) #34	Vsnl1 (MGP_PahariEiJ_G0029374) #35	Rad51ap2 (MGP_PahariEiJ_G0029375) #36	Cyria (MGP_PahariEiJ_G0029376)	Mycn (MGP_PahariEiJ_G0029377)
Rat	MODERN SPECIES	16	Sf3b6 (ENSRNOG00000046172) #7	Fkbp1b (ENSRNOG00000047143) #8	Wdcp (ENSRNOG00000049989) #9	Mfsd2b (ENSRNOG00000023508) #10	Ubxn2a (ENSRNOG00000068687) #11	Atad2b (ENSRNOG00000058973) #12	Klhl29 (ENSRNOG00000005371) #13	ENSRNOG00000069218	Tdrd15 (ENSRNOG00000060052) #14	Apob (ENSRNOG00000005542) #15	Ldah (ENSRNOG00000021475) #16	Gdf7 (ENSRNOG00000006046) #17	Hs1bp3 (ENSRNOG00000006062) #18	Slc7a15 (ENSRNOG00000006119) #20	Pum2 (ENSRNOG00000006180) #21	Sdc1 (ENSRNOG00000059947) #22	Laptm4a (ENSRNOG00000006865) #23	Matn3 (ENSRNOG00000056141) #24	Wdr35 (ENSRNOG00000028783) #25	Ttc32 (ENSRNOG00000049088) #26	Osr1 (ENSRNOG00000004210) #27	Nt5c1b (ENSRNOG00000004296) #28	Rdh14 (ENSRNOG00000039551) #29	Kcns3 (ENSRNOG00000004899) #31	Msgn1 (ENSRNOG00000028518) #32	Gen1 (ENSRNOG00000004667) #33	Smc6 (ENSRNOG00000004908) #34	Vsnl1 (ENSRNOG00000005345) #35	Rad51ap2 (ENSRNOG00000049271) #36	AABR07072562.1 (ENSRNOG00000050653)	Cyria (ENSRNOG00000052758)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1858														ENSNGAG00000015046	ENSNGAG00000016665 #21	Sdc1 (ENSNGAG00000010323) #22	Laptm4a (ENSNGAG00000019118) #23	Matn3 (ENSNGAG00000000368) #24	Wdr35 (ENSNGAG00000020320) #25	Ttc32 (ENSNGAG00000011876) #26	Osr1 (ENSNGAG00000009668) #27	Nt5c1b (ENSNGAG00000014021) #28	Rdh14 (ENSNGAG00000001843) #29	ENSNGAG00000015754	Kcns3 (ENSNGAG00000015414) #31	Msgn1 (ENSNGAG00000014536) #32	Smc6 (ENSNGAG00000018825) #34	Vsnl1 (ENSNGAG00000012638) #35
Lesser Egyptian jerboa	MODERN SPECIES	106	Ubxn2a (ENSJJAG00000016225) #11	ENSJJAG00000017291 #12	ENSJJAG00000018968	ENSJJAG00000022603	ENSJJAG00000014110	Klhl29 (ENSJJAG00000023008) #13	ENSJJAG00000003145	ENSJJAG00000004727 #15	ENSJJAG00000007009 #15	Ldah (ENSJJAG00000015888) #16	Gdf7 (ENSJJAG00000016441) #17	ENSJJAG00000017439 #18	Rhob (ENSJJAG00000013877) #19	ENSJJAG00000017909	Pum2 (ENSJJAG00000020969) #21	Sdc1 (ENSJJAG00000021653) #22	Laptm4a (ENSJJAG00000000101) #23	Matn3 (ENSJJAG00000000252) #24	Wdr35 (ENSJJAG00000016508) #25	Ttc32 (ENSJJAG00000022107) #26	ENSJJAG00000014132	Osr1 (ENSJJAG00000022508) #27	Nt5c1b (ENSJJAG00000021950) #28	Rdh14 (ENSJJAG00000023561) #29	Kcns3 (ENSJJAG00000001486) #31	Msgn1 (ENSJJAG00000006273) #32	Smc6 (ENSJJAG00000010160) #34	Vsnl1 (ENSJJAG00000011824) #35	ENSJJAG00000014268	ENSJJAG00000013620 #36	Cyria (ENSJJAG00000007480)
Kangaroo rat	MODERN SPECIES	339	ENSDORG00000009773	ENSDORG00000009772 #7	Fkbp1b (ENSDORG00000025103) #8	Wdcp (ENSDORG00000009768) #9	Mfsd2b (ENSDORG00000015943) #10	Ubxn2a (ENSDORG00000025740) #11	ENSDORG00000027743 #12	Klhl29 (ENSDORG00000012917) #13	Apob (ENSDORG00000028395) #15	Ldah (ENSDORG00000010281) #16	Gdf7 (ENSDORG00000010280) #17	Hs1bp3 (ENSDORG00000005361) #18	Rhob (ENSDORG00000016173) #19	ENSDORG00000027569 ##20	Pum2 (ENSDORG00000011453) #21	Sdc1 (ENSDORG00000014605) #22	Laptm4a (ENSDORG00000014089) #23	Matn3 (ENSDORG00000014087) #24	Wdr35 (ENSDORG00000014086) #25	Ttc32 (ENSDORG00000029568) #26	Osr1 (ENSDORG00000000798) #27	Nt5c1b (ENSDORG00000012516) #28	Rdh14 (ENSDORG00000019712) #29	Kcns3 (ENSDORG00000024097) #31	Msgn1 (ENSDORG00000003509) #32	Gen1 (ENSDORG00000010754) #33	Smc6 (ENSDORG00000010753) #34	Vsnl1 (ENSDORG00000024043) #35	ENSDORG00000026713	Cyria (ENSDORG00000010274)	Mycn (ENSDORG00000009906)
Lagomorpha	ANCESTRAL SPECIES	75	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a.h.a ##10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000162520.d #20	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432
Rabbit	MODERN SPECIES	11	FKBP1B (ENSOCUG00000037720) #8	WDCP (ENSOCUG00000012562) #9	ENSOCUG00000008793 ##10	UBXN2A (ENSOCUG00000008783) #11	ATAD2B (ENSOCUG00000005723) #12	KLHL29 (ENSOCUG00000017372) #13	TDRD15 (ENSOCUG00000005346) #14	APOB (ENSOCUG00000005329) #15	LDAH (ENSOCUG00000015795) #16	GDF7 (ENSOCUG00000026956) #17	HS1BP3 (ENSOCUG00000015781) #18	RHOB (ENSOCUG00000032265) #19	ENSOCUG00000025149 #20	PUM2 (ENSOCUG00000017908) #21	ENSOCUG00000032467	SDC1 (ENSOCUG00000025956) #22	LAPTM4A (ENSOCUG00000026699) #23	MATN3 (ENSOCUG00000021257) #24	WDR35 (ENSOCUG00000013185) #25	TTC32 (ENSOCUG00000003731) #26	ENSOCUG00000034308	OSR1 (ENSOCUG00000006091) #27	NT5C1B (ENSOCUG00000026238) #28	RDH14 (ENSOCUG00000025332) #29	KCNS3 (ENSOCUG00000007365) #31	MSGN1 (ENSOCUG00000000309) #32	GEN1 (ENSOCUG00000027255) #33	ENSOCUG00000034282 #34	ENSOCUG00000017307	VSNL1 (ENSOCUG00000026184) #35	RAD51AP2 (ENSOCUG00000027767) #36
Pika	MODERN SPECIES	432															PUM2 (ENSOPRG00000001963) #21	SDC1 (ENSOPRG00000001946) #22
Tree shrew	MODERN SPECIES	637														PUM2 (ENSTBEG00000008729) #21	ENSTBEG00000008106	SDC1 (ENSTBEG00000007662) #22
Primates	ANCESTRAL SPECIES	14	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00950000183424
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00940000161217	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00950000183424
Lemuriformes	ANCESTRAL SPECIES	23	ENSGT00940000161217	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00950000183424
Mouse lemur	MODERN SPECIES	30	FKBP1B (ENSMICG00000028839) #8	WDCP (ENSMICG00000001526) #9	MFSD2B (ENSMICG00000027625) #10	ENSMICG00000001508 #11	ENSMICG00000043253	ENSMICG00000030239	ATAD2B (ENSMICG00000003489) #12	KLHL29 (ENSMICG00000032037) #13	TDRD15 (ENSMICG00000026358) #14	APOB (ENSMICG00000011331) #15	LDAH (ENSMICG00000011319) #16	GDF7 (ENSMICG00000044629) #17	HS1BP3 (ENSMICG00000027064) #18	RHOB (ENSMICG00000029771) #19	PUM2 (ENSMICG00000011647) #21	SDC1 (ENSMICG00000041634) #22	LAPTM4A (ENSMICG00000031395) #23	MATN3 (ENSMICG00000032185) #24	WDR35 (ENSMICG00000037969) #25	ENSMICG00000041804 #26	OSR1 (ENSMICG00000004493) #27	NT5C1B (ENSMICG00000010847) #28	RDH14 (ENSMICG00000033814) #29	ENSMICG00000029479 #31	GEN1 (ENSMICG00000026479) #33	SMC6 (ENSMICG00000010802) #34	VSNL1 (ENSMICG00000036354) #35	RAD51AP2 (ENSMICG00000038023) #36	CYRIA (ENSMICG00000013924)	MYCN (ENSMICG00000013903)	DDX1 (ENSMICG00000001023)
Lemuriformes_a	ANCESTRAL SPECIES	10	ENSGT00940000161217	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00950000183424
Coquerels sifaka	MODERN SPECIES	559									TDRD15 (ENSPCOG00000017764) #14	APOB (ENSPCOG00000021611) #15	LDAH (ENSPCOG00000014577) #16	GDF7 (ENSPCOG00000020938) #17	HS1BP3 (ENSPCOG00000016428) #18	RHOB (ENSPCOG00000004927) #19	PUM2 (ENSPCOG00000019636) #21	SDC1 (ENSPCOG00000024117) #22	LAPTM4A (ENSPCOG00000019008) #23	MATN3 (ENSPCOG00000020678) #24	TTC32 (ENSPCOG00000028173) #26	ENSPCOG00000015877	OSR1 (ENSPCOG00000024991) #27	NT5C1B (ENSPCOG00000000264) #28	RDH14 (ENSPCOG00000023642) #29	KCNS3 (ENSPCOG00000009392) #31	GEN1 (ENSPCOG00000022405) #33	SMC6 (ENSPCOG00000028541) #34	VSNL1 (ENSPCOG00000003780) #35	RAD51AP2 (ENSPCOG00000019163) #36	CYRIA (ENSPCOG00000021268)	MYCN (ENSPCOG00000013382)	DDX1 (ENSPCOG00000028185)
Greater bamboo lemur	MODERN SPECIES	339				ATAD2B (ENSPSMG00000006746) #12	ENSPSMG00000006754	KLHL29 (ENSPSMG00000006774) #13	ENSPSMG00000006781	TDRD15 (ENSPSMG00000006790) #14	APOB (ENSPSMG00000006849) #15	LDAH (ENSPSMG00000006874) #16	ENSPSMG00000006877	GDF7 (ENSPSMG00000006880) #17	HS1BP3 (ENSPSMG00000006908) #18	ENSPSMG00000006929	PUM2 (ENSPSMG00000007064) #21	SDC1 (ENSPSMG00000007157) #22	LAPTM4A (ENSPSMG00000007179) #23	MATN3 (ENSPSMG00000007217) #24	WDR35 (ENSPSMG00000007386) #25	TTC32 (ENSPSMG00000007425) #26	OSR1 (ENSPSMG00000007427) #27	NT5C1B (ENSPSMG00000007455) #28	RDH14 (ENSPSMG00000007468) #29	KCNS3 (ENSPSMG00000007502) #31	MSGN1 (ENSPSMG00000007507) #32	GEN1 (ENSPSMG00000007525) #33	SMC6 (ENSPSMG00000007622) #34	VSNL1 (ENSPSMG00000007643) #35	RAD51AP2 (ENSPSMG00000007652) #36	ENSPSMG00000007660	CYRIA (ENSPSMG00000007716)
Bushbaby	MODERN SPECIES	137	TP53I3 (ENSOGAG00000004470)	SF3B6 (ENSOGAG00000004468) #7	FKBP1B (ENSOGAG00000029092) #8	WDCP (ENSOGAG00000002596) #9	MFSD2B (ENSOGAG00000002595) #10	UBXN2A (ENSOGAG00000000025) #11	ATAD2B (ENSOGAG00000004574) #12	KLHL29 (ENSOGAG00000004572) #13	TDRD15 (ENSOGAG00000026095) #14	APOB (ENSOGAG00000015084) #15	LDAH (ENSOGAG00000000194) #16	GDF7 (ENSOGAG00000025229) #17	HS1BP3 (ENSOGAG00000000192) #18	RHOB (ENSOGAG00000034489) #19	PUM2 (ENSOGAG00000002187) #21	SDC1 (ENSOGAG00000010183) #22	LAPTM4A (ENSOGAG00000003002) #23	ENSOGAG00000029374	MATN3 (ENSOGAG00000002995) #24	WDR35 (ENSOGAG00000002991) #25	TTC32 (ENSOGAG00000002990) #26	OSR1 (ENSOGAG00000003047) #27	NT5C1B (ENSOGAG00000001728) #28	RDH14 (ENSOGAG00000027061) #29	KCNS3 (ENSOGAG00000007336) #31	MSGN1 (ENSOGAG00000012569) #32	GEN1 (ENSOGAG00000004816) #33	SMC6 (ENSOGAG00000004809) #34	VSNL1 (ENSOGAG00000030574) #35	ENSOGAG00000031508	CYRIA (ENSOGAG00000009218)
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00900000143745	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00950000183424
Tarsier	MODERN SPECIES	4807															PUM2 (ENSTSYG00000014463) #21	SDC1 (ENSTSYG00000026443) #22
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00900000143745	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00950000183424
Platyrrhini	ANCESTRAL SPECIES	45	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00900000143745	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00900000143081	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905.n.a #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432
Mas night monkey	MODERN SPECIES	950	WDCP (ENSANAG00000025318) #9	MFSD2B (ENSANAG00000035631) #10	UBXN2A (ENSANAG00000031177) #11	ATAD2B (ENSANAG00000024449) #12	KLHL29 (ENSANAG00000035261) #13	ENSANAG00000008532	TDRD15 (ENSANAG00000026523) #14	APOB (ENSANAG00000032282) #15	ENSANAG00000031943	LDAH (ENSANAG00000022004) #16	GDF7 (ENSANAG00000035417) #17	HS1BP3 (ENSANAG00000028913) #18	RHOB (ENSANAG00000018114) #19	PUM2 (ENSANAG00000021807) #21	ENSANAG00000019275	SDC1 (ENSANAG00000032410) #22
Cebidae	ANCESTRAL SPECIES	40	ENSGT00940000161217	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00900000143745	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905.n.a #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432
Marmoset	MODERN SPECIES	5	MFSD2B (ENSCJAG00000007691) #10	UBXN2A (ENSCJAG00000007665) #11	ATAD2B (ENSCJAG00000007628) #12	KLHL29 (ENSCJAG00000007588) #13	ENSCJAG00000062913	TDRD15 (ENSCJAG00000007582) #14	ENSCJAG00000043360	APOB (ENSCJAG00000007533) #15	LDAH (ENSCJAG00000007531) #16	GDF7 (ENSCJAG00000007529) #17	HS1BP3 (ENSCJAG00000007517) #18	ENSCJAG00000022935	RHOB (ENSCJAG00000077207) #19	ENSCJAG00000086921	PUM2 (ENSCJAG00000007450) #21	SDC1 (ENSCJAG00000039283) #22	ENSCJAG00000071467 #23	MATN3 (ENSCJAG00000007406) #24	WDR35 (ENSCJAG00000007386) #25	TTC32 (ENSCJAG00000065690) #26	OSR1 (ENSCJAG00000007379) #27	ENSCJAG00000083040	ENSCJAG00000022933	NT5C1B (ENSCJAG00000007361) #28	KCNS3 (ENSCJAG00000007354) #31	MSGN1 (ENSCJAG00000032633) #32	GEN1 (ENSCJAG00000007327) #33	SMC6 (ENSCJAG00000007282) #34	VSNL1 (ENSCJAG00000002578) #35	RAD51AP2 (ENSCJAG00000007262) #36	CYRIA (ENSCJAG00000043048)
Cebidae_a	ANCESTRAL SPECIES	46	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00950000182926.b.d.c.a.g.a	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00900000143745	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905.n.a #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432
Capuchin	MODERN SPECIES	1	SF3B6 (ENSCCAG00000036653) #7	FKBP1B (ENSCCAG00000003872) #8	WDCP (ENSCCAG00000035342) #9	MFSD2B (ENSCCAG00000026318) #10	UBXN2A (ENSCCAG00000025921) #11	ENSCCAG00000021209	ENSCCAG00000025817	ATAD2B (ENSCCAG00000031116) #12	KLHL29 (ENSCCAG00000036850) #13	APOB (ENSCCAG00000021140) #15	LDAH (ENSCCAG00000033829) #16	GDF7 (ENSCCAG00000035529) #17	HS1BP3 (ENSCCAG00000028038) #18	RHOB (ENSCCAG00000018485) #19	PUM2 (ENSCCAG00000037035) #21	SDC1 (ENSCCAG00000031573) #22	ENSCCAG00000019764	LAPTM4A (ENSCCAG00000029231) #23	MATN3 (ENSCCAG00000033118) #24	WDR35 (ENSCCAG00000030486) #25	TTC32 (ENSCCAG00000025284) #26	OSR1 (ENSCCAG00000029161) #27	NT5C1B (ENSCCAG00000020565) #28	RDH14 (ENSCCAG00000027491) #29	KCNS3 (ENSCCAG00000020195) #31	MSGN1 (ENSCCAG00000020077) #32	GEN1 (ENSCCAG00000031121) #33	SMC6 (ENSCCAG00000027451) #34	VSNL1 (ENSCCAG00000027421) #35	RAD51AP2 (ENSCCAG00000024012) #36	ENSCCAG00000027131
Bolivian squirrel monkey	MODERN SPECIES	113	SF3B6 (ENSSBOG00000002914) #7	FKBP1B (ENSSBOG00000020385) #8	ENSSBOG00000029165 #9	MFSD2B (ENSSBOG00000022320) #10	UBXN2A (ENSSBOG00000023884) #11	ENSSBOG00000031186	ATAD2B (ENSSBOG00000032583) #12	KLHL29 (ENSSBOG00000021000) #13	APOB (ENSSBOG00000008834) #15	LDAH (ENSSBOG00000031409) #16	GDF7 (ENSSBOG00000022327) #17	HS1BP3 (ENSSBOG00000023433) #18	ENSSBOG00000032320	RHOB (ENSSBOG00000013056) #19	PUM2 (ENSSBOG00000022007) #21	ENSSBOG00000029288 #22	LAPTM4A (ENSSBOG00000031549) #23	MATN3 (ENSSBOG00000027840) #24	WDR35 (ENSSBOG00000030509) #25	TTC32 (ENSSBOG00000024543) #26	OSR1 (ENSSBOG00000023175) #27	ENSSBOG00000023931	NT5C1B (ENSSBOG00000030055) #28	RDH14 (ENSSBOG00000028443) #29	KCNS3 (ENSSBOG00000010067) #31	MSGN1 (ENSSBOG00000010657) #32	GEN1 (ENSSBOG00000031046) #33	SMC6 (ENSSBOG00000020240) #34	VSNL1 (ENSSBOG00000029668) #35	RAD51AP2 (ENSSBOG00000028552) #36	CYRIA (ENSSBOG00000025029)
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00900000143745	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00910000147213	ENSGT00940000154445.f.b.b	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00940000161217	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00910000147213	ENSGT00940000154445.f.b.b	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36
Hominidae	ANCESTRAL SPECIES	19	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00550000076422	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00910000147213	ENSGT00940000154445.f.b.b	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00550000076422	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00910000147230	ENSGT00940000164653	ENSGT00910000147240	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00910000147213	ENSGT00940000154445.f.b.b	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36
Gorilla	MODERN SPECIES	14	MFSD2B (ENSGGOG00000007752) #10	ENSGGOG00000036282	UBXN2A (ENSGGOG00000002445) #11	ATAD2B (ENSGGOG00000006027) #12	KLHL29 (ENSGGOG00000013889) #13	ENSGGOG00000024059	TDRD15 (ENSGGOG00000026710) #14	APOB (ENSGGOG00000005179) #15	LDAH (ENSGGOG00000000226) #16	GDF7 (ENSGGOG00000000225) #17	RHOB (ENSGGOG00000042542) #19	PUM2 (ENSGGOG00000011374) #21	ENSGGOG00000037272	ENSGGOG00000040988	ENSGGOG00000027238	SDC1 (ENSGGOG00000041852) #22	LAPTM4A (ENSGGOG00000027710) #23	MATN3 (ENSGGOG00000009798) #24	WDR35 (ENSGGOG00000009782) #25	TTC32 (ENSGGOG00000009777) #26	ENSGGOG00000037043	OSR1 (ENSGGOG00000016877) #27	NT5C1B (ENSGGOG00000014980) #28	KCNS3 (ENSGGOG00000000972) #31	MSGN1 (ENSGGOG00000012168) #32	GEN1 (ENSGGOG00000012157) #33	SMC6 (ENSGGOG00000003864) #34	VSNL1 (ENSGGOG00000008280) #35	RAD51AP2 (ENSGGOG00000004887) #36	ENSGGOG00000038621	FAM49A (ENSGGOG00000001230)
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00550000076422	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00910000147230	ENSGT00940000164653	ENSGT00910000147240	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00910000147213	ENSGT00940000154445.f.b.b	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36
Human	MODERN SPECIES	11	FAM228B (ENSG00000219626)	SF3B6 (ENSG00000115128) #7	FKBP1B (ENSG00000119782) #8	WDCP (ENSG00000163026) #9	MFSD2B (ENSG00000205639) #10	UBXN2A (ENSG00000173960) #11	ATAD2B (ENSG00000119778) #12	KLHL29 (ENSG00000119771) #13	TDRD15 (ENSG00000218819) #14	APOB (ENSG00000084674) #15	LDAH (ENSG00000118961) #16	GDF7 (ENSG00000143869) #17	HS1BP3 (ENSG00000118960) #18	RHOB (ENSG00000143878) #19	PUM2 (ENSG00000055917) #21	SDC1 (ENSG00000115884) #22	LAPTM4A (ENSG00000068697) #23	MATN3 (ENSG00000132031) #24	WDR35 (ENSG00000118965) #25	TTC32 (ENSG00000183891) #26	OSR1 (ENSG00000143867) #27	NT5C1B (ENSG00000185013) #28	NT5C1B-RDH14 (ENSG00000250741)	RDH14 (ENSG00000240857) #29	KCNS3 (ENSG00000170745) #31	MSGN1 (ENSG00000151379) #32	GEN1 (ENSG00000178295) #33	SMC6 (ENSG00000163029) #34	VSNL1 (ENSG00000163032) #35	RAD51AP2 (ENSG00000214842) #36	CYRIA (ENSG00000197872)
Pan	ANCESTRAL SPECIES	17	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00550000076422	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00390000002743.h	ENSGT00900000143745	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00910000147230	ENSGT00940000164653	ENSGT00910000147240	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00910000147213	ENSGT00940000154445.f.b.b	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36
Chimpanzee	MODERN SPECIES	14	UBXN2A (ENSPTRG00000011705) #11	ATAD2B (ENSPTRG00000011702) #12	KLHL29 (ENSPTRG00000011701) #13	ENSPTRG00000048960	TDRD15 (ENSPTRG00000024174) #14	APOB (ENSPTRG00000011699) #15	LDAH (ENSPTRG00000011698) #16	GDF7 (ENSPTRG00000011697) #17	HS1BP3 (ENSPTRG00000011696) #18	ENSPTRG00000016906	ENSPTRG00000052538	RHOB (ENSPTRG00000046722) #19	PUM2 (ENSPTRG00000011692) #21	ENSPTRG00000050463	ENSPTRG00000043608	SDC1 (ENSPTRG00000044887) #22	LAPTM4A (ENSPTRG00000011690) #23	MATN3 (ENSPTRG00000011689) #24	WDR35 (ENSPTRG00000011686) #25	TTC32 (ENSPTRG00000011685) #26	ENSPTRG00000045822	ENSPTRG00000039202	OSR1 (ENSPTRG00000011683) #27	NT5C1B (ENSPTRG00000011681) #28	KCNS3 (ENSPTRG00000011680) #31	MSGN1 (ENSPTRG00000011679) #32	GEN1 (ENSPTRG00000011678) #33	SMC6 (ENSPTRG00000011677) #34	VSNL1 (ENSPTRG00000011675) #35	RAD51AP2 (ENSPTRG00000034119) #36	ENSPTRG00000052339
Bonobo	MODERN SPECIES	14	ATAD2B (ENSPPAG00000033306) #12	KLHL29 (ENSPPAG00000030367) #13	ENSPPAG00000025710	TDRD15 (ENSPPAG00000032970) #14	APOB (ENSPPAG00000011975) #15	LDAH (ENSPPAG00000016359) #16	ENSPPAG00000041145 #17	HS1BP3 (ENSPPAG00000043977) #18	ENSPPAG00000008002	ENSPPAG00000029523	RHOB (ENSPPAG00000023187) #19	ENSPPAG00000039825	PUM2 (ENSPPAG00000023095) #21	ENSPPAG00000039090	ENSPPAG00000037572	SDC1 (ENSPPAG00000037638) #22	LAPTM4A (ENSPPAG00000037069) #23	MATN3 (ENSPPAG00000035472) #24	WDR35 (ENSPPAG00000037901) #25	TTC32 (ENSPPAG00000035271) #26	ENSPPAG00000034662	OSR1 (ENSPPAG00000032777) #27	NT5C1B (ENSPPAG00000030956) #28	ENSPPAG00000033270 #29	KCNS3 (ENSPPAG00000000574) #31	MSGN1 (ENSPPAG00000033217) #32	GEN1 (ENSPPAG00000028355) #33	SMC6 (ENSPPAG00000015508) #34	VSNL1 (ENSPPAG00000032929) #35	RAD51AP2 (ENSPPAG00000041865) #36	ENSPPAG00000027462
Orangutan	MODERN SPECIES	14	SF3B6 (ENSPPYG00000036931) #7	FKBP1B (ENSPPYG00000012604) #8	WDCP (ENSPPYG00000012605) #9	MFSD2B (ENSPPYG00000012606) #10	UBXN2A (ENSPPYG00000012607) #11	ATAD2B (ENSPPYG00000012609) #12	KLHL29 (ENSPPYG00000012610) #13	ENSPPYG00000012611	TDRD15 (ENSPPYG00000031614) #14	APOB (ENSPPYG00000012612) #15	LDAH (ENSPPYG00000037972) #16	GDF7 (ENSPPYG00000035678) #17	HS1BP3 (ENSPPYG00000012615) #18	RHOB (ENSPPYG00000012616) #19	PUM2 (ENSPPYG00000012617) #21	SDC1 (ENSPPYG00000032047) #22	LAPTM4A (ENSPPYG00000012620) #23	MATN3 (ENSPPYG00000012621) #24	WDR35 (ENSPPYG00000012622) #25	ENSPPYG00000036668	ENSPPYG00000012623 #26	ENSPPYG00000012624 #27	ENSPPYG00000012626 #28	KCNS3 (ENSPPYG00000012627) #31	MSGN1 (ENSPPYG00000012628) #32	GEN1 (ENSPPYG00000012629) #33	SMC6 (ENSPPYG00000012630) #34	VSNL1 (ENSPPYG00000012631) #35	RAD51AP2 (ENSPPYG00000012632) #36	CYRIA (ENSPPYG00000012634)	ENSPPYG00000038333
Gibbon	MODERN SPECIES	9	MFSD2B (ENSNLEG00000000769) #10	UBXN2A (ENSNLEG00000000751) #11	ENSNLEG00000033640	ATAD2B (ENSNLEG00000000713) #12	KLHL29 (ENSNLEG00000000686) #13	ENSNLEG00000028338 #14	APOB (ENSNLEG00000000598) #15	LDAH (ENSNLEG00000032022) #16	GDF7 (ENSNLEG00000002638) #17	HS1BP3 (ENSNLEG00000002614) #18	ENSNLEG00000030630	RHOB (ENSNLEG00000030179) #19	PUM2 (ENSNLEG00000002509) #21	ENSNLEG00000002506	ENSNLEG00000029549	SDC1 (ENSNLEG00000031569) #22	LAPTM4A (ENSNLEG00000002305) #23	MATN3 (ENSNLEG00000002247) #24	WDR35 (ENSNLEG00000002032) #25	TTC32 (ENSNLEG00000030350) #26	ENSNLEG00000028344	OSR1 (ENSNLEG00000002004) #27	ENSNLEG00000033627	NT5C1B (ENSNLEG00000001850) #28	RDH14 (ENSNLEG00000028221) #29	KCNS3 (ENSNLEG00000001834) #31	MSGN1 (ENSNLEG00000018810) #32	GEN1 (ENSNLEG00000029593) #33	SMC6 (ENSNLEG00000001569) #34	VSNL1 (ENSNLEG00000001537) #35	RAD51AP2 (ENSNLEG00000001524) #36
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00900000143745	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00910000147230	ENSGT00940000153340.B.k.b	ENSGT00910000147240	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00910000147213	ENSGT00940000154445.f.b.b	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36
Rhinopithecus	ANCESTRAL SPECIES	205	ENSGT00390000017067	ENSGT00530000064185.a	ENSGT00530000064185.b	ENSGT00940000155936.b	ENSGT00990000205444	ENSGT00950000183021.b	ENSGT00500000044959	ENSGT00390000016702	ENSGT00940000156549.a.a	ENSGT00940000157133.i	ENSGT00390000002143.b	ENSGT00940000157575 #21	ENSGT00910000147230	ENSGT00940000153340.B.k.b	ENSGT00910000147240	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25
Black snub-nosed monkey	MODERN SPECIES	1130	PFN4 (ENSRBIG00000007265)	FAM228B (ENSRBIG00000037047)	FAM228A (ENSRBIG00000036877)	ITSN2 (ENSRBIG00000033688)	ENSRBIG00000025719	NCOA1 (ENSRBIG00000035295)	PTRHD1 (ENSRBIG00000032190)	CENPO (ENSRBIG00000040211)	ADCY3 (ENSRBIG00000034802)	ENSRBIG00000041935	EFR3B (ENSRBIG00000029715)	PUM2 (ENSRBIG00000044880) #21	ENSRBIG00000044692	ENSRBIG00000025027	ENSRBIG00000036594	SDC1 (ENSRBIG00000034487) #22	LAPTM4A (ENSRBIG00000014447) #23	MATN3 (ENSRBIG00000040709) #24
Golden snub-nosed monkey	MODERN SPECIES	2854													ENSRROG00000029300	ENSRROG00000001955 #21	ENSRROG00000032801	SDC1 (ENSRROG00000033514) #22	LAPTM4A (ENSRROG00000045642) #23	MATN3 (ENSRROG00000033484) #24	ENSRROG00000038720 #25
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00900000143745	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00910000147213	ENSGT00940000154445.f.b.b	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36
Vervet Monkey	MODERN SPECIES	5	SF3B6 (ENSCSAG00000008390) #7	FKBP1B (ENSCSAG00000008381) #8	WDCP (ENSCSAG00000008372) #9	MFSD2B (ENSCSAG00000008345) #10	UBXN2A (ENSCSAG00000008300) #11	ATAD2B (ENSCSAG00000008290) #12	KLHL29 (ENSCSAG00000008250) #13	ENSCSAG00000008205	TDRD15 (ENSCSAG00000000380) #14	APOB (ENSCSAG00000008169) #15	LDAH (ENSCSAG00000008123) #16	GDF7 (ENSCSAG00000008108) #17	HS1BP3 (ENSCSAG00000008096) #18	RHOB (ENSCSAG00000000379) #19	PUM2 (ENSCSAG00000008087) #21	SDC1 (ENSCSAG00000008077) #22	LAPTM4A (ENSCSAG00000008071) #23	MATN3 (ENSCSAG00000008064) #24	WDR35 (ENSCSAG00000008051) #25	TTC32 (ENSCSAG00000008028) #26	OSR1 (ENSCSAG00000008012) #27	NT5C1B (ENSCSAG00000007999) #28	RDH14 (ENSCSAG00000007969) #29	KCNS3 (ENSCSAG00000000378) #31	MSGN1 (ENSCSAG00000000377) #32	GEN1 (ENSCSAG00000007952) #33	SMC6 (ENSCSAG00000007925) #34	VSNL1 (ENSCSAG00000007914) #35	RAD51AP2 (ENSCSAG00000007907) #36	CYRIA (ENSCSAG00000007902)	MYCN (ENSCSAG00000007889)
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00900000143745	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT01100000264019	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00910000147213	ENSGT00940000154445.f.b.b	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00900000143745	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT01100000264019	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00910000147213	ENSGT00940000154445.f.b.b	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36
Cercopithecinae_d	ANCESTRAL SPECIES	23	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092 #18	ENSGT00900000143745	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT01100000264019	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00910000147213	ENSGT00940000154445.f.b.b	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36
Sooty mangabey	MODERN SPECIES	542	WDCP (ENSCATG00000030463) #9	MFSD2B (ENSCATG00000040488) #10	UBXN2A (ENSCATG00000007176) #11	ATAD2B (ENSCATG00000035587) #12	ENSCATG00000036009	KLHL29 (ENSCATG00000037112) #13	TDRD15 (ENSCATG00000014633) #14	APOB (ENSCATG00000025709) #15	LDAH (ENSCATG00000025214) #16	GDF7 (ENSCATG00000015865) #17	HS1BP3 (ENSCATG00000038867) #18	ENSCATG00000037321	RHOB (ENSCATG00000021066) #19	PUM2 (ENSCATG00000043826) #21	ENSCATG00000041330	SDC1 (ENSCATG00000044796) #22	LAPTM4A (ENSCATG00000036860) #23	MATN3 (ENSCATG00000038685) #24	WDR35 (ENSCATG00000043847) #25	TTC32 (ENSCATG00000043877) #26	ENSCATG00000035517	ENSCATG00000035076	OSR1 (ENSCATG00000041386) #27	NT5C1B (ENSCATG00000030226) #28	RDH14 (ENSCATG00000040055) #29	KCNS3 (ENSCATG00000019098) #31	MSGN1 (ENSCATG00000020832) #32	GEN1 (ENSCATG00000002261) #33	SMC6 (ENSCATG00000007538) #34	VSNL1 (ENSCATG00000043748) #35	RAD51AP2 (ENSCATG00000035523) #36
Drill	MODERN SPECIES	273									APOB (ENSMLEG00000034887) #15	LDAH (ENSMLEG00000032951) #16	GDF7 (ENSMLEG00000030590) #17	HS1BP3 (ENSMLEG00000036114) #18	RHOB (ENSMLEG00000014328) #19	PUM2 (ENSMLEG00000039243) #21	ENSMLEG00000041181	SDC1 (ENSMLEG00000030457) #22	LAPTM4A (ENSMLEG00000011616) #23	MATN3 (ENSMLEG00000028366) #24	WDR35 (ENSMLEG00000042194) #25	TTC32 (ENSMLEG00000034466) #26	ENSMLEG00000035262	OSR1 (ENSMLEG00000036388) #27	NT5C1B (ENSMLEG00000032260) #28	KCNS3 (ENSMLEG00000024480) #31	MSGN1 (ENSMLEG00000016060) #32	GEN1 (ENSMLEG00000037009) #33	SMC6 (ENSMLEG00000038093) #34	VSNL1 (ENSMLEG00000009493) #35	RAD51AP2 (ENSMLEG00000032822) #36	ENSMLEG00000032548	CYRIA (ENSMLEG00000021733)
Macaca	ANCESTRAL SPECIES	17	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092.c #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT01100000264019	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00910000147213	ENSGT00940000154445.f.b.b	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36
Pig-tailed macaque	MODERN SPECIES	561	FKBP1B (ENSMNEG00000044742) #8	WDCP (ENSMNEG00000043270) #9	MFSD2B (ENSMNEG00000042041) #10	UBXN2A (ENSMNEG00000039344) #11	ATAD2B (ENSMNEG00000040701) #12	KLHL29 (ENSMNEG00000040600) #13	TDRD15 (ENSMNEG00000018389) #14	APOB (ENSMNEG00000041817) #15	LDAH (ENSMNEG00000037298) #16	GDF7 (ENSMNEG00000036625) #17	HS1BP3 (ENSMNEG00000042432) #18	ENSMNEG00000035256	RHOB (ENSMNEG00000004093) #19	PUM2 (ENSMNEG00000039659) #21	ENSMNEG00000031627	SDC1 (ENSMNEG00000037009) #22	LAPTM4A (ENSMNEG00000030721) #23	MATN3 (ENSMNEG00000040055) #24	WDR35 (ENSMNEG00000043506) #25	TTC32 (ENSMNEG00000032654) #26	ENSMNEG00000000256	ENSMNEG00000040736	OSR1 (ENSMNEG00000024040) #27	NT5C1B (ENSMNEG00000031824) #28	RDH14 (ENSMNEG00000042523) #29	KCNS3 (ENSMNEG00000010748) #31	MSGN1 (ENSMNEG00000009838) #32	GEN1 (ENSMNEG00000041505) #33	SMC6 (ENSMNEG00000037394) #34
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00390000005908 #7	ENSGT00940000153311.a.b.b #8	ENSGT00390000001660 #9	ENSGT00390000005318.b.b.a #10	ENSGT00520000055567.a.b #11	ENSGT00550000074694.b #12	ENSGT00940000158824 #13	ENSGT00940000162581 #14	ENSGT00590000083139 #15	ENSGT00390000009688 #16	ENSGT00940000160140.b #17	ENSGT00390000013092.c #18	ENSGT00950000182945.b.a.a.b.b.b #19	ENSGT00940000157575 #21	ENSGT01100000264019	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000155979 #31	ENSGT00530000063712.a.b #32	ENSGT00940000159266 #33	ENSGT00550000074816.A.a #34	ENSGT00940000156513 #35	ENSGT00470000042500 #36	ENSGT00390000015159.a.b	ENSGT00940000158432	ENSGT00940000153294.m.a.d.e
Crab-eating macaque	MODERN SPECIES	4	UBXN2A (ENSMFAG00000038617) #11	ATAD2B (ENSMFAG00000045919) #12	KLHL29 (ENSMFAG00000002617) #13	ENSMFAG00000064985	ENSMFAG00000051328	ENSMFAG00000060195	APOB (ENSMFAG00000037483) #15	ENSMFAG00000042760	LDAH (ENSMFAG00000036499) #16	ENSMFAG00000052727	GDF7 (ENSMFAG00000049809) #17	HS1BP3 (ENSMFAG00000005189) #18	RHOB (ENSMFAG00000030406) #19	PUM2 (ENSMFAG00000000492) #21	ENSMFAG00000043647	ENSMFAG00000064406 #22	LAPTM4A (ENSMFAG00000036772) #23	ENSMFAG00000049571	MATN3 (ENSMFAG00000043379) #24	WDR35 (ENSMFAG00000034406) #25	TTC32 (ENSMFAG00000040343) #26	OSR1 (ENSMFAG00000039189) #27	ENSMFAG00000059615	ENSMFAG00000065687	ENSMFAG00000051219	ENSMFAG00000064231	NT5C1B (ENSMFAG00000002988) #28	KCNS3 (ENSMFAG00000007411) #31	MSGN1 (ENSMFAG00000007491) #32	GEN1 (ENSMFAG00000002080) #33	SMC6 (ENSMFAG00000033284) #34
Rhesus	MODERN SPECIES	4	WDCP (ENSMMUG00000012340) #9	MFSD2B (ENSMMUG00000012337) #10	UBXN2A (ENSMMUG00000006487) #11	ATAD2B (ENSMMUG00000020952) #12	ENSMMUG00000055073	KLHL29 (ENSMMUG00000016030) #13	TDRD15 (ENSMMUG00000048513) #14	APOB (ENSMMUG00000007692) #15	ENSMMUG00000056842	LDAH (ENSMMUG00000003355) #16	ENSMMUG00000055950	GDF7 (ENSMMUG00000050446) #17	HS1BP3 (ENSMMUG00000022996) #18	PUM2 (ENSMMUG00000023181) #21	ENSMMUG00000052718	SDC1 (ENSMMUG00000030922) #22	LAPTM4A (ENSMMUG00000001582) #23	MATN3 (ENSMMUG00000001579) #24	WDR35 (ENSMMUG00000001575) #25	TTC32 (ENSMMUG00000001570) #26	ENSMMUG00000056023	OSR1 (ENSMMUG00000037622) #27	NT5C1B (ENSMMUG00000014083) #28	KCNS3 (ENSMMUG00000017198) #31	MSGN1 (ENSMMUG00000008141) #32	GEN1 (ENSMMUG00000012058) #33	SMC6 (ENSMMUG00000012056) #34	VSNL1 (ENSMMUG00000040529) #35	RAD51AP2 (ENSMMUG00000058011) #36	CYRIA (ENSMMUG00000020385)	MYCN (ENSMMUG00000052363)