Hystricomorpha_a	ANCESTRAL SPECIES	31	ENSGT00390000005908 #9	ENSGT00940000153311.a.b.b #10	ENSGT00390000001660 #11	ENSGT00390000005318.b.b.a.g ##12	ENSGT00520000055567.a.b #13	ENSGT00550000074694.b #14	ENSGT00940000158824 #15	ENSGT00590000083139 #16	ENSGT00390000009688 #17	ENSGT00940000160140.b	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b	ENSGT00940000162520.d #19	ENSGT00940000157575 #20	ENSGT00900000143081 #21	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #30	ENSGT00530000063712.a.b #31	ENSGT00940000159266 #32	ENSGT00550000074816.A.a #33	ENSGT00940000156513 #34
Guinea pig	MODERN SPECIES	18	FAM228B (ENSCPOG00000030306) #7	PFN4 (ENSCPOG00000009683) #8	SF3B6 (ENSCPOG00000008016) #9	FKBP1B (ENSCPOG00000039379) #10	WDCP (ENSCPOG00000019263) #11	MFSD2B (ENSCPOG00000022662) #12	UBXN2A (ENSCPOG00000038294) #13	ATAD2B (ENSCPOG00000014176) #14	KLHL29 (ENSCPOG00000014174) #15	APOB (ENSCPOG00000004931) #16	LDAH (ENSCPOG00000012586) #17	HS1BP3 (ENSCPOG00000000278) #18	ENSCPOG00000037907 #19	PUM2 (ENSCPOG00000031996) #20	ENSCPOG00000007075 #21	SDC1 (ENSCPOG00000008875) #22	LAPTM4A (ENSCPOG00000009690) #23	MATN3 (ENSCPOG00000004739) #24	WDR35 (ENSCPOG00000007053) #25	TTC32 (ENSCPOG00000033658) #26	OSR1 (ENSCPOG00000002025) #27	NT5C1B (ENSCPOG00000012761) #28	RDH14 (ENSCPOG00000022651) #29	KCNS3 (ENSCPOG00000009232) #30	MSGN1 (ENSCPOG00000003061) #31	GEN1 (ENSCPOG00000033894) #32	SMC6 (ENSCPOG00000014752) #33	VSNL1 (ENSCPOG00000030283) #34
Hystricomorpha_b	ANCESTRAL SPECIES	26	ENSGT00390000017067 #8	ENSGT00390000005908 #9	ENSGT00940000153311.a.b.b #10	ENSGT00390000001660 #11	ENSGT00390000005318.b.b.a.g ##12	ENSGT00520000055567.a.b #13	ENSGT00550000074694.b #14	ENSGT00940000158824 #15	ENSGT00590000083139 #16	ENSGT00390000009688 #17	ENSGT00940000160140.b	ENSGT00390000013092 #18	ENSGT00950000182945.b.a.a.b.b.b	ENSGT00940000162520.d #19	ENSGT00940000157575 #20	ENSGT00940000161171 #22	ENSGT00940000153446.b #23	ENSGT00940000157581 #24	ENSGT00940000155745 #25	ENSGT00390000011905 #26	ENSGT00940000158993 #27	ENSGT00390000017767.b.a #28	ENSGT00940000160181 #29	ENSGT00940000155979 #30	ENSGT00530000063712.a.b #31	ENSGT00940000159266 #32	ENSGT00550000074816.A.a #33	ENSGT00940000156513 #34
Long-tailed chinchilla	MODERN SPECIES	176	FAM228B (ENSCLAG00000004984) #7	PFN4 (ENSCLAG00000004618) #8	SF3B6 (ENSCLAG00000014512) #9	FKBP1B (ENSCLAG00000011181) #10	WDCP (ENSCLAG00000008275) #11	MFSD2B (ENSCLAG00000014189) ##12	UBXN2A (ENSCLAG00000014610) #13	ATAD2B (ENSCLAG00000005215) #14	KLHL29 (ENSCLAG00000005598) #15	APOB (ENSCLAG00000008056) #16	LDAH (ENSCLAG00000011308) #17	HS1BP3 (ENSCLAG00000008832) #18	RHOB (ENSCLAG00000017801)	ENSCLAG00000005814 #19	PUM2 (ENSCLAG00000006048) #20	SDC1 (ENSCLAG00000007345) #22	LAPTM4A (ENSCLAG00000006983) #23	MATN3 (ENSCLAG00000006019) #24	WDR35 (ENSCLAG00000007929) #25	TTC32 (ENSCLAG00000009839) #26	OSR1 (ENSCLAG00000009423) #27	NT5C1B (ENSCLAG00000008659) #28	RDH14 (ENSCLAG00000009341) #29	KCNS3 (ENSCLAG00000013937) #30	MSGN1 (ENSCLAG00000015119) #31	GEN1 (ENSCLAG00000008865) #32	SMC6 (ENSCLAG00000012919) #33	VSNL1 (ENSCLAG00000011222) #34	ENSCLAG00000013272
Degu	MODERN SPECIES	60	ENSODEG00000009834 #14	ENSODEG00000008786	KLHL29 (ENSODEG00000009928) #15	ENSODEG00000007428	ENSODEG00000019450	ENSODEG00000007994	ENSODEG00000019494	APOB (ENSODEG00000008337) #16	ENSODEG00000008523 #17	GDF7 (ENSODEG00000008847)	HS1BP3 (ENSODEG00000010003) #18	RHOB (ENSODEG00000019841)	ENSODEG00000010362 #19	PUM2 (ENSODEG00000007823) #20	ENSODEG00000008774	SDC1 (ENSODEG00000010758) #22	LAPTM4A (ENSODEG00000008579) #23	MATN3 (ENSODEG00000008451) #24	WDR35 (ENSODEG00000012693) #25	TTC32 (ENSODEG00000009280) #26	OSR1 (ENSODEG00000008728) #27	NT5C1B (ENSODEG00000008929) #28	RDH14 (ENSODEG00000008458) #29	KCNS3 (ENSODEG00000009066) #30	ENSODEG00000019755	MSGN1 (ENSODEG00000009615) #31	GEN1 (ENSODEG00000010156) #32	SMC6 (ENSODEG00000008987) #33	VSNL1 (ENSODEG00000008555) #34	ENSODEG00000008159	SLC10A4 (ENSODEG00000010331)