Gnathostomata	ANCESTRAL SPECIES	63	ENSGT00940000163155	ENSGT00940000157719	ENSGT01100000266166	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000164385.a.b	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT00940000167916	ENSGT01090000260070.D #25
Euteleostomi	ANCESTRAL SPECIES	38	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000161569	ENSGT01100000263543	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT00940000167916	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33
Sarcopterygii	ANCESTRAL SPECIES	62	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT01100000263530	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35
Tetrapoda	ANCESTRAL SPECIES	4	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Mammalia	ANCESTRAL SPECIES	2	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Theria	ANCESTRAL SPECIES	4	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Eutheria	ANCESTRAL SPECIES	9	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Glires	ANCESTRAL SPECIES	5	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Muroidea	ANCESTRAL SPECIES	66	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Prairie vole	MODERN SPECIES	355	Pnisr (ENSMOCG00000010290) #7	Coq3 (ENSMOCG00000014486) #8	Faxc (ENSMOCG00000019894) #9	Fbxl4 (ENSMOCG00000018220) #10	Pou3f2 (ENSMOCG00000003520) #11	Mms22l (ENSMOCG00000016665) #12	Klhl32 (ENSMOCG00000020765) #13	ENSMOCG00000016823 #14	Ndufaf4 (ENSMOCG00000001038) #15	Gpr63 (ENSMOCG00000022609) #16	Fhl5 (ENSMOCG00000012293) #17	Ufl1 (ENSMOCG00000019840) #18	Fut9 (ENSMOCG00000001401) #19	Manea (ENSMOCG00000019411) #20	ENSMOCG00000002513 #21	Epha7 (ENSMOCG00000020214) #22	Map3k7 (ENSMOCG00000012453) #23	ENSMOCG00000001306 #24	Gja10 (ENSMOCG00000001726) #25	ENSMOCG00000017624 #26	Mdn1 (ENSMOCG00000008145) #27	Lyrm2 (ENSMOCG00000016199) #28	Ankrd6 (ENSMOCG00000009992) #29	Rragd (ENSMOCG00000013775) #30	Ube2j1 (ENSMOCG00000016173) #31	Gabrr2 (ENSMOCG00000021871) #32	Gabrr1 (ENSMOCG00000013200) #33	Pm20d2 (ENSMOCG00000012445) #34	Srsf12 (ENSMOCG00000006973) #35	Pnrc1 (ENSMOCG00000010386) #36	Rngtt (ENSMOCG00000000920) #37
Northern American deer mouse	MODERN SPECIES	11	Usp45 (ENSPEMG00000006676)	ENSPEMG00000030192	Pnisr (ENSPEMG00000003524) #7	Coq3 (ENSPEMG00000002775) #8	Faxc (ENSPEMG00000000141) #9	Fbxl4 (ENSPEMG00000015634) #10	Pou3f2 (ENSPEMG00000002130) #11	Mms22l (ENSPEMG00000008908) #12	Klhl32 (ENSPEMG00000006572) #13	Ndufaf4 (ENSPEMG00000031258) #15	Gpr63 (ENSPEMG00000026056) #16	Fhl5 (ENSPEMG00000008773) #17	Ufl1 (ENSPEMG00000002974) #18	Fut9 (ENSPEMG00000028898) #19	Manea (ENSPEMG00000030628) #20	Epha7 (ENSPEMG00000020928) #22	ENSPEMG00000019312	Map3k7 (ENSPEMG00000012318) #23	Bach2 (ENSPEMG00000024668) #24	Gja10 (ENSPEMG00000015491) #25	Casp8ap2 (ENSPEMG00000030214) #26	Mdn1 (ENSPEMG00000012086) #27	ENSPEMG00000025961 #28	Ankrd6 (ENSPEMG00000017300) #29	Rragd (ENSPEMG00000009726) #30	Ube2j1 (ENSPEMG00000010209) #31	Gabrr2 (ENSPEMG00000011073) #32	Gabrr1 (ENSPEMG00000000167) #33	Pm20d2 (ENSPEMG00000000291) #34	ENSPEMG00000006893 #35	Pnrc1 (ENSPEMG00000024382) #36
Cricetinae	ANCESTRAL SPECIES	21																ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063.a #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Chinese hamster chok1gshd	MODERN SPECIES	111	ENSCGRG00001007884	Mms22l (ENSCGRG00001017422) #12	Klhl32 (ENSCGRG00001019757) #13	ENSCGRG00001016066	Ndufaf4 (ENSCGRG00001015554) #15	Gpr63 (ENSCGRG00001006566) #16	ENSCGRG00001020246	Fhl5 (ENSCGRG00001016810) #17	Ufl1 (ENSCGRG00001007168) #18	ENSCGRG00001018796	FUT9 (ENSCGRG00001007342) #19	ENSCGRG00001016557	Manea (ENSCGRG00001013459) #20	ENSCGRG00001010511	ENSCGRG00001009500	Epha7 (ENSCGRG00001024038) #22	Map3k7 (ENSCGRG00001006542) #23	Bach2 (ENSCGRG00001022819) #24	Gja10 (ENSCGRG00001006501) #25	ENSCGRG00001015514 #26	Mdn1 (ENSCGRG00001013549) #27	Lyrm2 (ENSCGRG00001008264) #28	Ankrd6 (ENSCGRG00001020575) #29	Rragd (ENSCGRG00001002084) #30	Ube2j1 (ENSCGRG00001011645) #31	Gabrr2 (ENSCGRG00001000639) #32	Gabrr1 (ENSCGRG00001023329) #33	ENSCGRG00001007791	Pm20d2 (ENSCGRG00001020497) #34	Srsf12 (ENSCGRG00001002679) #35	Pnrc1 (ENSCGRG00001003862) #36
Golden Hamster	MODERN SPECIES	802																Epha7 (ENSMAUG00000000040) #22
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000164601	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Mus	ANCESTRAL SPECIES	3	ENSGT00940000164601	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000164601	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Mus_B	ANCESTRAL SPECIES	22	ENSGT00940000164601	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000164601	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Steppe mouse	MODERN SPECIES	3076																Epha7 (ENSMSIG00000016840) #22
spretus	MODERN SPECIES	13	Ccnc (MGP_SPRETEiJ_G0026793)	Tstd3 (MGP_SPRETEiJ_G0026794)	Usp45 (MGP_SPRETEiJ_G0026795)	Pnisr (MGP_SPRETEiJ_G0026796) #7	Coq3 (MGP_SPRETEiJ_G0026797) #8	Faxc (MGP_SPRETEiJ_G0026798) #9	Fbxl4 (MGP_SPRETEiJ_G0026799) #10	Pou3f2 (MGP_SPRETEiJ_G0026800) #11	Mms22l (MGP_SPRETEiJ_G0026801) #12	Klhl32 (MGP_SPRETEiJ_G0026802) #13	Gpr63 (MGP_SPRETEiJ_G0026803) #16	Fhl5 (MGP_SPRETEiJ_G0026804) #17	Ufl1 (MGP_SPRETEiJ_G0026805) #18	Fut9 (MGP_SPRETEiJ_G0026806) #19	Manea (MGP_SPRETEiJ_G0026807) #20	Epha7 (MGP_SPRETEiJ_G0026808) #22	Map3k7 (MGP_SPRETEiJ_G0026809) #23	Bach2 (MGP_SPRETEiJ_G0026810) #24	Gja10 (MGP_SPRETEiJ_G0026811) #25	Casp8ap2 (MGP_SPRETEiJ_G0026812) #26	Mdn1 (MGP_SPRETEiJ_G0026813) #27	Lyrm2 (MGP_SPRETEiJ_G0026814) #28	Ankrd6 (MGP_SPRETEiJ_G0026815) #29	MGP_SPRETEiJ_G0026816	Rragd (MGP_SPRETEiJ_G0026817) #30	Ube2j1 (MGP_SPRETEiJ_G0026818) #31	Gabrr2 (MGP_SPRETEiJ_G0026819) #32	Gabrr1 (MGP_SPRETEiJ_G0026820) #33	Pm20d2 (MGP_SPRETEiJ_G0026821) #34	MGP_SPRETEiJ_G0026822 #35	Pnrc1 (MGP_SPRETEiJ_G0026823) #36
Mouse	MODERN SPECIES	13	Tstd3 (ENSMUSG00000028251)	Usp45 (ENSMUSG00000040455)	Pnisr (ENSMUSG00000028248) #7	Coq3 (ENSMUSG00000028247) #8	Faxc (ENSMUSG00000028246) #9	Fbxl4 (ENSMUSG00000040410) #10	Pou3f2 (ENSMUSG00000095139) #11	Mms22l (ENSMUSG00000045751) #12	Klhl32 (ENSMUSG00000040387) #13	Ndufaf4 (ENSMUSG00000028261) #15	Gpr63 (ENSMUSG00000040372) #16	Fhl5 (ENSMUSG00000028259) #17	Ufl1 (ENSMUSG00000040359) #18	Fut9 (ENSMUSG00000055373) #19	Manea (ENSMUSG00000040520) #20	Epha7 (ENSMUSG00000028289) #22	Map3k7 (ENSMUSG00000028284) #23	Bach2 (ENSMUSG00000040270) #24	Gja10 (ENSMUSG00000051056) #25	Casp8ap2 (ENSMUSG00000028282) #26	Mdn1 (ENSMUSG00000058006) #27	Lyrm2 (ENSMUSG00000045854) #28	Ankrd6 (ENSMUSG00000040183) #29	Rragd (ENSMUSG00000028278) #30	Ube2j1 (ENSMUSG00000028277) #31	Gabrr2 (ENSMUSG00000023267) #32	Gabrr1 (ENSMUSG00000028280) #33	Pm20d2 (ENSMUSG00000054659) #34	Srsf12 (ENSMUSG00000054679) #35	Pnrc1 (ENSMUSG00000040128) #36	Rngtt (ENSMUSG00000028274) #37
Ryukyu mouse	MODERN SPECIES	13	Tstd3 (MGP_CAROLIEiJ_G0025845)	Usp45 (MGP_CAROLIEiJ_G0025846)	Pnisr (MGP_CAROLIEiJ_G0025847) #7	Coq3 (MGP_CAROLIEiJ_G0025848) #8	Faxc (MGP_CAROLIEiJ_G0025849) #9	Fbxl4 (MGP_CAROLIEiJ_G0025850) #10	Pou3f2 (MGP_CAROLIEiJ_G0025851) #11	Mms22l (MGP_CAROLIEiJ_G0025852) #12	Klhl32 (MGP_CAROLIEiJ_G0025853) #13	Ndufaf4 (MGP_CAROLIEiJ_G0025854) #15	Gpr63 (MGP_CAROLIEiJ_G0025855) #16	Fhl5 (MGP_CAROLIEiJ_G0025856) #17	Ufl1 (MGP_CAROLIEiJ_G0025857) #18	Fut9 (MGP_CAROLIEiJ_G0025858) #19	Manea (MGP_CAROLIEiJ_G0025859) #20	Epha7 (MGP_CAROLIEiJ_G0025860) #22	Map3k7 (MGP_CAROLIEiJ_G0025861) #23	Bach2 (MGP_CAROLIEiJ_G0025862) #24	Gja10 (MGP_CAROLIEiJ_G0025863) #25	Casp8ap2 (MGP_CAROLIEiJ_G0025864) #26	Mdn1 (MGP_CAROLIEiJ_G0025865) #27	Lyrm2 (MGP_CAROLIEiJ_G0025866) #28	Ankrd6 (MGP_CAROLIEiJ_G0025867) #29	Rragd (MGP_CAROLIEiJ_G0025868) #30	Ube2j1 (MGP_CAROLIEiJ_G0025869) #31	Gabrr2 (MGP_CAROLIEiJ_G0025870) #32	Gabrr1 (MGP_CAROLIEiJ_G0025871) #33	Pm20d2 (MGP_CAROLIEiJ_G0025872) #34	MGP_CAROLIEiJ_G0025873 #35	Pnrc1 (MGP_CAROLIEiJ_G0025874) #36	Rngtt (MGP_CAROLIEiJ_G0025875) #37
Shrew mouse	MODERN SPECIES	14	Tstd3 (MGP_PahariEiJ_G0023968)	Usp45 (MGP_PahariEiJ_G0023969)	Pnisr (MGP_PahariEiJ_G0023970) #7	Coq3 (MGP_PahariEiJ_G0023971) #8	Faxc (MGP_PahariEiJ_G0023972) #9	Fbxl4 (MGP_PahariEiJ_G0023973) #10	Pou3f2 (MGP_PahariEiJ_G0023974) #11	Mms22l (MGP_PahariEiJ_G0023975) #12	Klhl32 (MGP_PahariEiJ_G0023976) #13	Ndufaf4 (MGP_PahariEiJ_G0023977) #15	Gpr63 (MGP_PahariEiJ_G0023978) #16	Fhl5 (MGP_PahariEiJ_G0023979) #17	Ufl1 (MGP_PahariEiJ_G0023980) #18	Fut9 (MGP_PahariEiJ_G0023981) #19	Manea (MGP_PahariEiJ_G0023982) #20	Epha7 (MGP_PahariEiJ_G0023983) #22	Map3k7 (MGP_PahariEiJ_G0023984) #23	Bach2 (MGP_PahariEiJ_G0023985) #24	Gja10 (MGP_PahariEiJ_G0023986) #25	Casp8ap2 (MGP_PahariEiJ_G0023987) #26	Mdn1 (MGP_PahariEiJ_G0023988) #27	Lyrm2 (MGP_PahariEiJ_G0023989) #28	Ankrd6 (MGP_PahariEiJ_G0023990) #29	Rragd (MGP_PahariEiJ_G0023991) #30	Ube2j1 (MGP_PahariEiJ_G0023992) #31	Gabrr2 (MGP_PahariEiJ_G0023993) #32	Gabrr1 (MGP_PahariEiJ_G0023994) #33	Pm20d2 (MGP_PahariEiJ_G0023995) #34	MGP_PahariEiJ_G0023996 #35	Pnrc1 (MGP_PahariEiJ_G0023997) #36	Rngtt (MGP_PahariEiJ_G0023998) #37
Rat	MODERN SPECIES	15	Faxc (ENSRNOG00000010106) #9	ENSRNOG00000071090	Fbxl4 (ENSRNOG00000005641) #10	Pou3f2 (ENSRNOG00000063836) #11	Mms22l (ENSRNOG00000006996) #12	Klhl32 (ENSRNOG00000007441) #13	Ndufaf4 (ENSRNOG00000007506) #15	ENSRNOG00000069171	Gpr63 (ENSRNOG00000007675) #16	Fhl5 (ENSRNOG00000007680) #17	Ufl1 (ENSRNOG00000007831) #18	AABR07047293.1 (ENSRNOG00000032078)	Fut9 (ENSRNOG00000070149) #19	Manea (ENSRNOG00000008626) #20	Slc25a36-ps1 (ENSRNOG00000064371)	Epha7 (ENSRNOG00000007030) #22	RGD1562265 (ENSRNOG00000069296)	Map3k7 (ENSRNOG00000005724) #23	Bach2 (ENSRNOG00000006170) #24	Gja10 (ENSRNOG00000006478) #25	Casp8ap2 (ENSRNOG00000006487) #26	Mdn1 (ENSRNOG00000047513) #27	Lyrm2 (ENSRNOG00000043105) #28	Ankrd6 (ENSRNOG00000007110) #29	Ggact-ps3 (ENSRNOG00000067156)	Rragd (ENSRNOG00000007331) #30	Ube2j1 (ENSRNOG00000007434) #31	Gabrr2 (ENSRNOG00000007490) #32	Gabrr1 (ENSRNOG00000007603) #33	Pm20d2 (ENSRNOG00000007755) #34	Srsf12 (ENSRNOG00000069984) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	416																Epha7 (ENSNGAG00000005109) #22
Lesser Egyptian jerboa	MODERN SPECIES	104	Mms22l (ENSJJAG00000009973) #12	ENSJJAG00000013259	Klhl32 (ENSJJAG00000022976) #13	ENSJJAG00000023258	Ndufaf4 (ENSJJAG00000023657) #15	Gpr63 (ENSJJAG00000013298) #16	Fhl5 (ENSJJAG00000000636) #17	Ufl1 (ENSJJAG00000006182) #18	ENSJJAG00000010016	ENSJJAG00000013253	Fut9 (ENSJJAG00000022594) #19	ENSJJAG00000023083	Manea (ENSJJAG00000023182) #20	ENSJJAG00000023315	ENSJJAG00000023379	Epha7 (ENSJJAG00000016879) #22	ENSJJAG00000017184	ENSJJAG00000017512	ENSJJAG00000017791	ENSJJAG00000017896	ENSJJAG00000018137	ENSJJAG00000018365	Map3k7 (ENSJJAG00000020494) #23	ENSJJAG00000013324 #24	Bach2 (ENSJJAG00000002786) #24	Gja10 (ENSJJAG00000006111) #25	ENSJJAG00000009996	ENSJJAG00000010339 #26	Mdn1 (ENSJJAG00000015545) #27	Lyrm2 (ENSJJAG00000020170) #28	Ankrd6 (ENSJJAG00000021174) #29
Kangaroo rat	MODERN SPECIES	351	ENSDORG00000015077	Slc35b3 (ENSDORG00000007915)	ENSDORG00000024425	Tfap2a (ENSDORG00000012263)	Gcnt2 (ENSDORG00000023790)	ENSDORG00000015069	Tmem14c (ENSDORG00000029428)	Mak (ENSDORG00000003520)	Gcm2 (ENSDORG00000002244)	ENSDORG00000002247	Elovl2 (ENSDORG00000013468)	Fhl5 (ENSDORG00000001705) #17	Ufl1 (ENSDORG00000001703) #18	Fut9 (ENSDORG00000027214) #19	Manea (ENSDORG00000003958) #20	Epha7 (ENSDORG00000013841) #22	ENSDORG00000015066	ENSDORG00000013233 #23	ENSDORG00000023620 #24	Gja10 (ENSDORG00000028097) #25	ENSDORG00000026051 #26	Mdn1 (ENSDORG00000005460) #27	Lyrm2 (ENSDORG00000004849) #28	Ankrd6 (ENSDORG00000014887) #29	Rragd (ENSDORG00000030039) #30	ENSDORG00000027921 #31	Gabrr2 (ENSDORG00000013019) #32	Gabrr1 (ENSDORG00000012059) #33	Pm20d2 (ENSDORG00000026875) #34
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000163155	ENSGT00940000157719.t	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Marmotini	ANCESTRAL SPECIES	11	ENSGT00940000157719.t	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000167085	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Alpin marmot	MODERN SPECIES	2	USP45 (ENSMMMG00000011597)	PNISR (ENSMMMG00000011582) #7	COQ3 (ENSMMMG00000011572) #8	FAXC (ENSMMMG00000011541) #9	FBXL4 (ENSMMMG00000011504) #10	MMS22L (ENSMMMG00000011340) #12	KLHL32 (ENSMMMG00000011140) #13	NDUFAF4 (ENSMMMG00000011131) #15	GPR63 (ENSMMMG00000011119) #16	FHL5 (ENSMMMG00000011104) #17	UFL1 (ENSMMMG00000011052) #18	ENSMMMG00000011040	FUT9 (ENSMMMG00000011034) #19	MANEA (ENSMMMG00000011013) #20	ENSMMMG00000011000	EPHA7 (ENSMMMG00000010889) #22	MAP3K7 (ENSMMMG00000010706) #23	BACH2 (ENSMMMG00000010682) #24	GJA10 (ENSMMMG00000010674) #25	CASP8AP2 (ENSMMMG00000010620) #26	ENSMMMG00000010615	MDN1 (ENSMMMG00000010037) #27	LYRM2 (ENSMMMG00000010017) #28	ANKRD6 (ENSMMMG00000009730) #29	RRAGD (ENSMMMG00000009713) #30	UBE2J1 (ENSMMMG00000009701) #31	ENSMMMG00000009684	GABRR2 (ENSMMMG00000009662) #32	GABRR1 (ENSMMMG00000009640) #33	SRSF12 (ENSMMMG00000009632) #35	ENSMMMG00000009627 #36
Marmotini_b	ANCESTRAL SPECIES	247							ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000167085	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22
Squirrel	MODERN SPECIES	412																EPHA7 (ENSSTOG00000004161) #22
Arctic ground squirrel	MODERN SPECIES	108							MMS22L (ENSUPAG00010000905) #12	KLHL32 (ENSUPAG00010001018) #13	NDUFAF4 (ENSUPAG00010001153) #15	GPR63 (ENSUPAG00010001172) #16	FHL5 (ENSUPAG00010001189) #17	UFL1 (ENSUPAG00010001205) #18	ENSUPAG00010001260	FUT9 (ENSUPAG00010001268) #19	MANEA (ENSUPAG00010001275) #20	EPHA7 (ENSUPAG00010001281) #22	ENSUPAG00010001392
Eurasian red squirrel	MODERN SPECIES	16	FBXL4 (ENSSVLG00005009914) #10	POU3F2 (ENSSVLG00005009952) #11	ENSSVLG00005009975	MMS22L (ENSSVLG00005010083) #12	KLHL32 (ENSSVLG00005010406) #13	NDUFAF4 (ENSSVLG00005010749) #15	GPR63 (ENSSVLG00005010801) #16	ENSSVLG00005010834	FHL5 (ENSSVLG00005010871) #17	UFL1 (ENSSVLG00005010923) #18	FUT9 (ENSSVLG00005010979) #19	MANEA (ENSSVLG00005011033) #20	ENSSVLG00005011073	ENSSVLG00005011109	ENSSVLG00005011149	EPHA7 (ENSSVLG00005011198) #22	MAP3K7 (ENSSVLG00005011461) #23	BACH2 (ENSSVLG00005011670) #24	GJA10 (ENSSVLG00005011729) #25	CASP8AP2 (ENSSVLG00005011773) #26	MDN1 (ENSSVLG00005011919) #27	LYRM2 (ENSSVLG00005013140) #28	ANKRD6 (ENSSVLG00005013665) #29	ENSSVLG00005013947	EDF1 (ENSSVLG00005014055)	ENSSVLG00005014078	RRAGD (ENSSVLG00005014108) #30	UBE2J1 (ENSSVLG00005014182) #31	ENSSVLG00005014234	GABRR2 (ENSSVLG00005014299) #32	GABRR1 (ENSSVLG00005014390) #33
Hystricomorpha	ANCESTRAL SPECIES	41	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652.e #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Hystricomorpha_a	ANCESTRAL SPECIES	46	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063.c.a #26	ENSGT00620000088063.d #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652.e #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Hystricomorpha_b	ANCESTRAL SPECIES	41	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063.c.a #26	ENSGT00620000088063.d #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652.e #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Long-tailed chinchilla	MODERN SPECIES	118	USP45 (ENSCLAG00000009237)	PNISR (ENSCLAG00000013308) #7	ENSCLAG00000014198 #8	FAXC (ENSCLAG00000011371) #9	FBXL4 (ENSCLAG00000011157) #10	POU3F2 (ENSCLAG00000009397) #11	MMS22L (ENSCLAG00000013729) #12	KLHL32 (ENSCLAG00000015943) #13	NDUFAF4 (ENSCLAG00000010804) #15	ENSCLAG00000017762	GPR63 (ENSCLAG00000010379) #16	FHL5 (ENSCLAG00000009307) #17	UFL1 (ENSCLAG00000014375) #18	FUT9 (ENSCLAG00000014616) #19	MANEA (ENSCLAG00000013546) #20	EPHA7 (ENSCLAG00000011201) #22	MAP3K7 (ENSCLAG00000011965) #23	BACH2 (ENSCLAG00000009099) #24	GJA10 (ENSCLAG00000017814) #25	ENSCLAG00000011885 #26	ENSCLAG00000014853 #26	MDN1 (ENSCLAG00000012965) #27	LYRM2 (ENSCLAG00000008898) #28	ANKRD6 (ENSCLAG00000011077) #29	RRAGD (ENSCLAG00000010795) #30	UBE2J1 (ENSCLAG00000009436) #31	GABRR2 (ENSCLAG00000010396) #32	GABRR1 (ENSCLAG00000012927) #33	PM20D2 (ENSCLAG00000011752) #34	SRSF12 (ENSCLAG00000013868) #35	PNRC1 (ENSCLAG00000012309) #36
Degu	MODERN SPECIES	63		MMS22L (ENSODEG00000007104) #12	KLHL32 (ENSODEG00000006069) #13	ENSODEG00000009448	NDUFAF4 (ENSODEG00000006828) #15	GPR63 (ENSODEG00000019348) #16	FHL5 (ENSODEG00000007253) #17	UFL1 (ENSODEG00000010483) #18	ENSODEG00000007485 #21	FUT9 (ENSODEG00000019700) #19	ENSODEG00000010572	ENSODEG00000006941	MANEA (ENSODEG00000007043) #20	ENSODEG00000007719	ENSODEG00000019544	EPHA7 (ENSODEG00000006903) #22	MAP3K7 (ENSODEG00000007748) #23	ENSODEG00000019369 #24	GJA10 (ENSODEG00000007306) #25	ENSODEG00000007285 #26	MDN1 (ENSODEG00000007016) #27	LYRM2 (ENSODEG00000007531) #28	ANKRD6 (ENSODEG00000007908) #29	RRAGD (ENSODEG00000007559) #30	UBE2J1 (ENSODEG00000009168) #31	GABRR2 (ENSODEG00000007212) #32	ENSODEG00000019483	GABRR1 (ENSODEG00000008074) #33	PM20D2 (ENSODEG00000008228) #34	SRSF12 (ENSODEG00000009174) #35	ENSODEG00000007177 #36
Guinea pig	MODERN SPECIES	49	USP45 (ENSCPOG00000010267)	PNISR (ENSCPOG00000033472) #7	COQ3 (ENSCPOG00000005688) #8	ENSCPOG00000026200	FAXC (ENSCPOG00000005687) #9	FBXL4 (ENSCPOG00000035819) #10	POU3F2 (ENSCPOG00000003168) #11	MMS22L (ENSCPOG00000039717) #12	KLHL32 (ENSCPOG00000011948) #13	NDUFAF4 (ENSCPOG00000031112) #15	GPR63 (ENSCPOG00000005050) #16	FHL5 (ENSCPOG00000002157) #17	UFL1 (ENSCPOG00000006956) #18	FUT9 (ENSCPOG00000003693) #19	MANEA (ENSCPOG00000035608) #20	EPHA7 (ENSCPOG00000003600) #22	MAP3K7 (ENSCPOG00000008242) #23	BACH2 (ENSCPOG00000030579) #24	GJA10 (ENSCPOG00000009251) #25	CASP8AP2 (ENSCPOG00000004110) #26	MDN1 (ENSCPOG00000015626) #27	LYRM2 (ENSCPOG00000037251) #28	ANKRD6 (ENSCPOG00000015623) #29	RRAGD (ENSCPOG00000004364) #30	ENSCPOG00000001432 #31	GABRR2 (ENSCPOG00000010931) #32	GABRR1 (ENSCPOG00000010927) #33	PM20D2 (ENSCPOG00000010921) #34	SRSF12 (ENSCPOG00000010917) #35	PNRC1 (ENSCPOG00000032114) #36	RNGTT (ENSCPOG00000005124) #37
Naked mole-rat female	MODERN SPECIES		POU3F2 (ENSHGLG00000019894) #11	MMS22L (ENSHGLG00000000469) #12	ENSHGLG00000040999	KLHL32 (ENSHGLG00000000940) #13	ENSHGLG00000047933 #15	GPR63 (ENSHGLG00000040998) #16	ENSHGLG00000001482	FHL5 (ENSHGLG00000046172) #17	ENSHGLG00000019575 #18	FUT9 (ENSHGLG00000043577) #19	ENSHGLG00000046415	ENSHGLG00000003809	ENSHGLG00000036171	MANEA (ENSHGLG00000000715) #20	ENSHGLG00000001408	ENSHGLG00000011705 #22	ENSHGLG00000020995	ENSHGLG00000013158	ENSHGLG00000045458	ENSHGLG00000038632	ENSHGLG00000001026 #23	ENSHGLG00000001206 #24	ENSHGLG00000050644 #26	ENSHGLG00000038671	MDN1 (ENSHGLG00000001674) #27	ENSHGLG00000002586 #28	ENSHGLG00000003248	ANKRD6 (ENSHGLG00000002709) #29	RRAGD (ENSHGLG00000003346) #30	UBE2J1 (ENSHGLG00000048368) #31	GABRR2 (ENSHGLG00000003533) #32
Lagomorpha	ANCESTRAL SPECIES	598																ENSGT00940000160189 #22	ENSGT00940000157785 #23
Rabbit	MODERN SPECIES	3	ENSOCUG00000027653	FBXL4 (ENSOCUG00000007892) #10	ENSOCUG00000001087	MMS22L (ENSOCUG00000013868) #12	ENSOCUG00000026430	KLHL32 (ENSOCUG00000013852) #13	ENSOCUG00000002152 #15	GPR63 (ENSOCUG00000016058) #16	FHL5 (ENSOCUG00000017742) #17	UFL1 (ENSOCUG00000002084) #18	ENSOCUG00000036471	FUT9 (ENSOCUG00000012458) #19	ENSOCUG00000029427 #20	ENSOCUG00000023745	ENSOCUG00000037906	EPHA7 (ENSOCUG00000000672) #22	ENSOCUG00000008851	MAP3K7 (ENSOCUG00000001698) #23	ENSOCUG00000039106	BACH2 (ENSOCUG00000004231) #24	GJA10 (ENSOCUG00000001746) #25	CASP8AP2 (ENSOCUG00000001742) #26	ENSOCUG00000026042	MDN1 (ENSOCUG00000004534) #27	LYRM2 (ENSOCUG00000025876) #28	ANKRD6 (ENSOCUG00000004531) #29	RRAGD (ENSOCUG00000005294) #30	UBE2J1 (ENSOCUG00000005288) #31	GABRR2 (ENSOCUG00000000950) #32	GABRR1 (ENSOCUG00000000948) #33	PM20D2 (ENSOCUG00000000947) #34
Pika	MODERN SPECIES	1316																EPHA7 (ENSOPRG00000003617) #22
Tree shrew	MODERN SPECIES	1608																EPHA7 (ENSTBEG00000017438) #22
Primates	ANCESTRAL SPECIES	5	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00910000147078	ENSGT00530000063881.a.a #36
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00910000147078	ENSGT00530000063881.a.a #36
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00910000147078	ENSGT00530000063881.a.a #36
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00910000147078	ENSGT00530000063881.a.a #36
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00940000153314.a.b.a.k	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000159115.p	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00940000153314.a.b.a.k	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000159115.p	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000159115.p	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00910000147078
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184.f #10	ENSGT00940000155184.e #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00390000000153.l.a.cb.i.a.a	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00940000153314.a.b.a.k	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000159115.p	ENSGT00940000158591 #33	ENSGT00390000003365 #34
Olive baboon	MODERN SPECIES	16	FAXC (ENSPANG00000011254) #9	ENSPANG00000040842	FBXL4 (ENSPANG00000021958) #10	POU3F2 (ENSPANG00000045698) #11	MMS22L (ENSPANG00000006712) #12	KLHL32 (ENSPANG00000024390) #13	NDUFAF4 (ENSPANG00000038646) #15	GPR63 (ENSPANG00000023781) #16	FHL5 (ENSPANG00000000712) #17	UFL1 (ENSPANG00000024032) #18	FUT9 (ENSPANG00000006352) #19	MANEA (ENSPANG00000004978) #20	ENSPANG00000043325	ENSPANG00000043370	ENSPANG00000049735	EPHA7 (ENSPANG00000020691) #22	ENSPANG00000042299	ENSPANG00000050211	ENSPANG00000045484	MAP3K7 (ENSPANG00000021959) #23	BACH2 (ENSPANG00000006817) #24	GJA10 (ENSPANG00000011128) #25	CASP8AP2 (ENSPANG00000016264) #26	MDN1 (ENSPANG00000033473) #27	LYRM2 (ENSPANG00000024769) #28	ANKRD6 (ENSPANG00000017857) #29	RRAGD (ENSPANG00000021498) #30	UBE2J1 (ENSPANG00000016471) #31	GABRR2 (ENSPANG00000010453) #32	GABRR1 (ENSPANG00000020411) #33	SRSF12 (ENSPANG00000016731) #35
Cercopithecinae_d	ANCESTRAL SPECIES	35	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184.f #10	ENSGT00940000155184.e #10	ENSGT00910000147275	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00390000000153.l.a.cb.h.a	ENSGT00910000146649	ENSGT00940000157785 #23	ENSGT00910000148408	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00940000153314.a.b.a.k	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000159115.p
Drill	MODERN SPECIES	947														FUT9 (ENSMLEG00000009503) #19	MANEA (ENSMLEG00000037370) #20	EPHA7 (ENSMLEG00000043017) #22	ENSMLEG00000035703	ENSMLEG00000036625	ENSMLEG00000043941
Sooty mangabey	MODERN SPECIES	139	COQ3 (ENSCATG00000009558) #8	FAXC (ENSCATG00000029392) #9	ENSCATG00000034106	FBXL4 (ENSCATG00000045364) #10	ENSCATG00000015127	ENSCATG00000025087	ENSCATG00000009616	MMS22L (ENSCATG00000040956) #12	KLHL32 (ENSCATG00000039902) #13	NDUFAF4 (ENSCATG00000033077) #15	GPR63 (ENSCATG00000018743) #16	FHL5 (ENSCATG00000040405) #17	UFL1 (ENSCATG00000044470) #18	FUT9 (ENSCATG00000018263) #19	MANEA (ENSCATG00000042657) #20	EPHA7 (ENSCATG00000017708) #22	ENSCATG00000039613	ENSCATG00000037109	MAP3K7 (ENSCATG00000043799) #23	ENSCATG00000033625	BACH2 (ENSCATG00000037186) #24	GJA10 (ENSCATG00000005843) #25	CASP8AP2 (ENSCATG00000014543) #26	MDN1 (ENSCATG00000045011) #27	LYRM2 (ENSCATG00000038992) #28	ANKRD6 (ENSCATG00000034920) #29	RRAGD (ENSCATG00000017528) #30	UBE2J1 (ENSCATG00000039458) #31	GABRR2 (ENSCATG00000041117) #32	ENSCATG00000043258	GABRR1 (ENSCATG00000044484) #33
Macaca	ANCESTRAL SPECIES	9	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00910000147078	ENSGT00530000063881.a.a #36
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00940000164932	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00970000193421.B.w.a
Crab-eating macaque	MODERN SPECIES	14	PNISR (ENSMFAG00000001373) #7	COQ3 (ENSMFAG00000034338) #8	FAXC (ENSMFAG00000041545) #9	FBXL4 (ENSMFAG00000046148) #10	ENSMFAG00000055529	ENSMFAG00000057441	MMS22L (ENSMFAG00000003651) #12	KLHL32 (ENSMFAG00000041275) #13	NDUFAF4 (ENSMFAG00000030804) #15	GPR63 (ENSMFAG00000007033) #16	FHL5 (ENSMFAG00000038694) #17	UFL1 (ENSMFAG00000038476) #18	FUT9 (ENSMFAG00000006659) #19	MANEA (ENSMFAG00000035666) #20	ENSMFAG00000002472	EPHA7 (ENSMFAG00000033589) #22	ENSMFAG00000005773	ENSMFAG00000048694	ENSMFAG00000049903	ENSMFAG00000049481	ENSMFAG00000048262	MAP3K7 (ENSMFAG00000035469) #23	BACH2 (ENSMFAG00000040061) #24	ENSMFAG00000060642	GJA10 (ENSMFAG00000035012) #25	CASP8AP2 (ENSMFAG00000036833) #26	MDN1 (ENSMFAG00000041968) #27	LYRM2 (ENSMFAG00000055976) #28	ANKRD6 (ENSMFAG00000034278) #29	RRAGD (ENSMFAG00000038149) #30	UBE2J1 (ENSMFAG00000046333) #31
Rhesus	MODERN SPECIES	14	PNISR (ENSMMUG00000005925) #7	COQ3 (ENSMMUG00000050740) #8	FAXC (ENSMMUG00000005923) #9	FBXL4 (ENSMMUG00000001659) #10	POU3F2 (ENSMMUG00000001658) #11	MMS22L (ENSMMUG00000040203) #12	KLHL32 (ENSMMUG00000005093) #13	NDUFAF4 (ENSMMUG00000018843) #15	GPR63 (ENSMMUG00000055593) #16	FHL5 (ENSMMUG00000012621) #17	UFL1 (ENSMMUG00000012616) #18	FUT9 (ENSMMUG00000002598) #19	MANEA (ENSMMUG00000012202) #20	ENSMMUG00000057220	ENSMMUG00000016603	EPHA7 (ENSMMUG00000014867) #22	MAP3K7 (ENSMMUG00000006512) #23	BACH2 (ENSMMUG00000009736) #24	ENSMMUG00000049636	GJA10 (ENSMMUG00000005800) #25	CASP8AP2 (ENSMMUG00000009182) #26	MDN1 (ENSMMUG00000003464) #27	LYRM2 (ENSMMUG00000063166) #28	ANKRD6 (ENSMMUG00000003462) #29	RRAGD (ENSMMUG00000015262) #30	UBE2J1 (ENSMMUG00000047198) #31	GABRR2 (ENSMMUG00000019530) #32	GABRR1 (ENSMMUG00000014943) #33	PM20D2 (ENSMMUG00000014942) #34	SRSF12 (ENSMMUG00000014941) #35	RNGTT (ENSMMUG00000020097) #37
Pig-tailed macaque	MODERN SPECIES	188																EPHA7 (ENSMNEG00000034930) #22	ENSMNEG00000026922	VPS35 (ENSMNEG00000038494)	ORC6 (ENSMNEG00000043380)	MYLK3 (ENSMNEG00000037469)	C16orf87 (ENSMNEG00000039612)	GPT2 (ENSMNEG00000036184)	DNAJA2 (ENSMNEG00000043155)	ENSMNEG00000030871	NETO2 (ENSMNEG00000037070)	ITFG1 (ENSMNEG00000010412)	PHKB (ENSMNEG00000040305)	ENSMNEG00000020189	ABCC12 (ENSMNEG00000041035)	ABCC11 (ENSMNEG00000041830)	LONP2 (ENSMNEG00000033321)
Vervet Monkey	MODERN SPECIES	4	PPIL4 (ENSCSAG00000017219)	GINM1 (ENSCSAG00000017223)	KATNA1 (ENSCSAG00000017225)	LATS1 (ENSCSAG00000017228)	NUP43 (ENSCSAG00000017234)	PCMT1 (ENSCSAG00000017244)	LRP11 (ENSCSAG00000017247)	RAET1E (ENSCSAG00000017250)	ENSCSAG00000017253	ENSCSAG00000017254	ENSCSAG00000017258	ENSCSAG00000017261	ENSCSAG00000017264	FUT9 (ENSCSAG00000000191) #19	MANEA (ENSCSAG00000017266) #20	EPHA7 (ENSCSAG00000017268) #22	MAP3K7 (ENSCSAG00000017272) #23	BACH2 (ENSCSAG00000017273) #24	GJA10 (ENSCSAG00000000192) #25	CASP8AP2 (ENSCSAG00000017276) #26	ENSCSAG00000017279	ENSCSAG00000017283 #27	ENSCSAG00000017292 #27	LYRM2 (ENSCSAG00000017297) #28	ANKRD6 (ENSCSAG00000017299) #29	RRAGD (ENSCSAG00000017302) #30	UBE2J1 (ENSCSAG00000017306) #31	GABRR2 (ENSCSAG00000017310) #32	GABRR1 (ENSCSAG00000017318) #33	PM20D2 (ENSCSAG00000017322) #34	SRSF12 (ENSCSAG00000017325) #35
Rhinopithecus	ANCESTRAL SPECIES	1047																ENSGT00940000160189 #22	ENSGT00550000074850.k
Golden snub-nosed monkey	MODERN SPECIES	3236																EPHA7 (ENSRROG00000031830) #22
Black snub-nosed monkey	MODERN SPECIES	1230																EPHA7 (ENSRBIG00000040036) #22	ENSRBIG00000038830
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00550000074850.k	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00910000147078
Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00550000074850.k	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00910000147078
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00550000074850.k	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00910000147078
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00550000074850.k	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Pan	ANCESTRAL SPECIES	5	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000155342.k.a.b	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00550000074850.k	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Chimpanzee	MODERN SPECIES	19	TSTD3 (ENSPTRG00000052330)	USP45 (ENSPTRG00000018443)	ENSPTRG00000045943	PNISR (ENSPTRG00000018442) #7	COQ3 (ENSPTRG00000018441) #8	FAXC (ENSPTRG00000018440) #9	FBXL4 (ENSPTRG00000018438) #10	MMS22L (ENSPTRG00000018437) #12	KLHL32 (ENSPTRG00000018436) #13	NDUFAF4 (ENSPTRG00000018435) #15	GPR63 (ENSPTRG00000018434) #16	FHL5 (ENSPTRG00000018433) #17	UFL1 (ENSPTRG00000018432) #18	FUT9 (ENSPTRG00000052137) #19	MANEA (ENSPTRG00000018429) #20	EPHA7 (ENSPTRG00000018428) #22	ENSPTRG00000042764	MAP3K7 (ENSPTRG00000018427) #23	BACH2 (ENSPTRG00000018426) #24	GJA10 (ENSPTRG00000018425) #25	CASP8AP2 (ENSPTRG00000045198) #26	MDN1 (ENSPTRG00000018423) #27	ENSPTRG00000018422 #28	ANKRD6 (ENSPTRG00000018421) #29	RRAGD (ENSPTRG00000018420) #30	UBE2J1 (ENSPTRG00000023663) #32	GABRR1 (ENSPTRG00000018417) #33	PM20D2 (ENSPTRG00000018416) #34	SRSF12 (ENSPTRG00000018415) #35	PNRC1 (ENSPTRG00000018414) #36	RNGTT (ENSPTRG00000018413) #37
Bonobo	MODERN SPECIES	19	ENSPPAG00000029781	PNISR (ENSPPAG00000027087) #7	COQ3 (ENSPPAG00000000909) #8	FAXC (ENSPPAG00000040951) #9	ENSPPAG00000038020	FBXL4 (ENSPPAG00000031572) #10	ENSPPAG00000038670	MMS22L (ENSPPAG00000027316) #12	KLHL32 (ENSPPAG00000021682) #13	NDUFAF4 (ENSPPAG00000037179) #15	GPR63 (ENSPPAG00000019706) #16	FHL5 (ENSPPAG00000035859) #17	UFL1 (ENSPPAG00000043299) #18	FUT9 (ENSPPAG00000000997) #19	MANEA (ENSPPAG00000043462) #20	EPHA7 (ENSPPAG00000029754) #22	ENSPPAG00000032336	MAP3K7 (ENSPPAG00000027822) #23	BACH2 (ENSPPAG00000030965) #24	GJA10 (ENSPPAG00000041616) #25	CASP8AP2 (ENSPPAG00000043281) #26	MDN1 (ENSPPAG00000005552) #27	ENSPPAG00000036082 #28	ANKRD6 (ENSPPAG00000028701) #29	RRAGD (ENSPPAG00000029815) #30	UBE2J1 (ENSPPAG00000033449) #31	GABRR2 (ENSPPAG00000034196) #32	GABRR1 (ENSPPAG00000038197) #33	PM20D2 (ENSPPAG00000038609) #34	SRSF12 (ENSPPAG00000041573) #35	PNRC1 (ENSPPAG00000040373) #36
Human	MODERN SPECIES	18	TSTD3 (ENSG00000279170)	USP45 (ENSG00000123552)	PNISR (ENSG00000132424) #7	COQ3 (ENSG00000132423) #8	FAXC (ENSG00000146267) #9	FBXL4 (ENSG00000112234) #10	POU3F2 (ENSG00000184486) #11	MMS22L (ENSG00000146263) #12	KLHL32 (ENSG00000186231) #13	NDUFAF4 (ENSG00000123545) #15	GPR63 (ENSG00000112218) #16	FHL5 (ENSG00000112214) #17	UFL1 (ENSG00000014123) #18	FUT9 (ENSG00000172461) #19	MANEA (ENSG00000172469) #20	EPHA7 (ENSG00000135333) #22	MAP3K7 (ENSG00000135341) #23	BACH2 (ENSG00000112182) #24	GJA10 (ENSG00000135355) #25	CASP8AP2 (ENSG00000118412) #26	MDN1 (ENSG00000112159) #27	LYRM2 (ENSG00000083099) #28	ANKRD6 (ENSG00000135299) #29	RRAGD (ENSG00000025039) #30	UBE2J1 (ENSG00000198833) #31	GABRR2 (ENSG00000111886) #32	GABRR1 (ENSG00000146276) #33	PM20D2 (ENSG00000146281) #34	SRSF12 (ENSG00000154548) #35	PNRC1 (ENSG00000146278) #36	RNGTT (ENSG00000111880) #37
Gorilla	MODERN SPECIES	19	ENSGGOG00000036723	PNISR (ENSGGOG00000012944) #7	COQ3 (ENSGGOG00000006696) #8	FAXC (ENSGGOG00000044046) #9	ENSGGOG00000041376	FBXL4 (ENSGGOG00000001187) #10	ENSGGOG00000027466	MMS22L (ENSGGOG00000003187) #12	KLHL32 (ENSGGOG00000003184) #13	NDUFAF4 (ENSGGOG00000038081) #15	GPR63 (ENSGGOG00000028245) #16	FHL5 (ENSGGOG00000004224) #17	UFL1 (ENSGGOG00000013798) #18	FUT9 (ENSGGOG00000037409) #19	MANEA (ENSGGOG00000041243) #20	EPHA7 (ENSGGOG00000006503) #22	MAP3K7 (ENSGGOG00000024243) #23	BACH2 (ENSGGOG00000012497) #24	GJA10 (ENSGGOG00000014072) #25	CASP8AP2 (ENSGGOG00000017136) #26	MDN1 (ENSGGOG00000006850) #27	ENSGGOG00000036584 #28	ANKRD6 (ENSGGOG00000016768) #29	RRAGD (ENSGGOG00000024195) #30	UBE2J1 (ENSGGOG00000013375) #31	GABRR2 (ENSGGOG00000013368) #32	GABRR1 (ENSGGOG00000016207) #33	PM20D2 (ENSGGOG00000016295) #34	SRSF12 (ENSGGOG00000024850) #35	ENSGGOG00000042493	PNRC1 (ENSGGOG00000025222) #36
Orangutan	MODERN SPECIES	19	ENSPPYG00000040827	USP45 (ENSPPYG00000016864)	PNISR (ENSPPYG00000025884) #7	COQ3 (ENSPPYG00000016863) #8	FAXC (ENSPPYG00000016862) #9	FBXL4 (ENSPPYG00000016861) #10	POU3F2 (ENSPPYG00000016860) #11	MMS22L (ENSPPYG00000016859) #12	KLHL32 (ENSPPYG00000016858) #13	NDUFAF4 (ENSPPYG00000016857) #15	GPR63 (ENSPPYG00000016856) #16	FHL5 (ENSPPYG00000016855) #17	UFL1 (ENSPPYG00000016854) #18	FUT9 (ENSPPYG00000016853) #19	MANEA (ENSPPYG00000031667) #20	EPHA7 (ENSPPYG00000016851) #22	MAP3K7 (ENSPPYG00000016850) #23	BACH2 (ENSPPYG00000016849) #24	GJA10 (ENSPPYG00000016848) #25	CASP8AP2 (ENSPPYG00000016847) #26	ENSPPYG00000016583	MDN1 (ENSPPYG00000016844) #27	LYRM2 (ENSPPYG00000040476) #28	ANKRD6 (ENSPPYG00000016842) #29	RRAGD (ENSPPYG00000016841) #30	UBE2J1 (ENSPPYG00000033208) #31	GABRR2 (ENSPPYG00000016839) #32	GABRR1 (ENSPPYG00000035957) #33	PM20D2 (ENSPPYG00000016838) #34	SRSF12 (ENSPPYG00000016837) #35	PNRC1 (ENSPPYG00000016836) #36
Gibbon	MODERN SPECIES	18	PNISR (ENSNLEG00000013690) #7	COQ3 (ENSNLEG00000013664) #8	FAXC (ENSNLEG00000030205) #9	FBXL4 (ENSNLEG00000013629) #10	ENSNLEG00000027712	MMS22L (ENSNLEG00000013600) #12	KLHL32 (ENSNLEG00000013575) #13	NDUFAF4 (ENSNLEG00000013568) #15	GPR63 (ENSNLEG00000013561) #16	FHL5 (ENSNLEG00000013537) #17	UFL1 (ENSNLEG00000013481) #18	FUT9 (ENSNLEG00000033460) #19	MANEA (ENSNLEG00000013454) #20	ENSNLEG00000018642	ENSNLEG00000033141	EPHA7 (ENSNLEG00000013448) #22	ENSNLEG00000032739	MAP3K7 (ENSNLEG00000013337) #23	BACH2 (ENSNLEG00000013316) #24	GJA10 (ENSNLEG00000018624) #25	CASP8AP2 (ENSNLEG00000013242) #26	MDN1 (ENSNLEG00000026737) #27	ENSNLEG00000030168 #28	ANKRD6 (ENSNLEG00000013183) #29	RRAGD (ENSNLEG00000013157) #30	UBE2J1 (ENSNLEG00000013135) #31	GABRR2 (ENSNLEG00000013114) #32	GABRR1 (ENSNLEG00000013094) #33	SRSF12 (ENSNLEG00000032347) #35	ENSNLEG00000013085 #36	RNGTT (ENSNLEG00000013064) #37
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00390000004524.c.a.b.b.b	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Cebidae	ANCESTRAL SPECIES	5	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000156150.e	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00390000004524.c.a.b.b.b	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Marmoset	MODERN SPECIES	16	FAXC (ENSCJAG00000001311) #9	ENSCJAG00000073822	FBXL4 (ENSCJAG00000001288) #10	POU3F2 (ENSCJAG00000039179) #11	ENSCJAG00000087034	ENSCJAG00000076487	ENSCJAG00000073963	MMS22L (ENSCJAG00000001254) #12	KLHL32 (ENSCJAG00000001239) #13	NDUFAF4 (ENSCJAG00000001235) #15	FHL5 (ENSCJAG00000001218) #17	UFL1 (ENSCJAG00000001179) #18	FUT9 (ENSCJAG00000043135) #19	MANEA (ENSCJAG00000047130) #20	ENSCJAG00000063859	EPHA7 (ENSCJAG00000001086) #22	ENSCJAG00000071326	ENSCJAG00000081735	MAP3K7 (ENSCJAG00000001026) #23	BACH2 (ENSCJAG00000001013) #24	GJA10 (ENSCJAG00000001005) #25	CASP8AP2 (ENSCJAG00000000992) #26	MDN1 (ENSCJAG00000000907) #27	ENSCJAG00000068951	ENSCJAG00000073794	ANKRD6 (ENSCJAG00000000878) #29	RRAGD (ENSCJAG00000002261) #30	UBE2J1 (ENSCJAG00000000850) #31	ENSCJAG00000075513	GABRR2 (ENSCJAG00000000835) #32	SRSF12 (ENSCJAG00000038575) #35
Cebidae_a	ANCESTRAL SPECIES	59	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.e #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000156150.e	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00390000004524.c.a.b.b.b	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Capuchin	MODERN SPECIES	116											FHL5 (ENSCCAG00000027621) #17	UFL1 (ENSCCAG00000032935) #18	FUT9 (ENSCCAG00000032190) #19	MANEA (ENSCCAG00000032772) #20	ENSCCAG00000024454	EPHA7 (ENSCCAG00000022456) #22	ENSCCAG00000022890	MAP3K7 (ENSCCAG00000026856) #23
Bolivian squirrel monkey	MODERN SPECIES	49	FBXL4 (ENSSBOG00000025650) #10	ENSSBOG00000034787	POU3F2 (ENSSBOG00000034311) #11	ENSSBOG00000021019	ENSSBOG00000028386	MMS22L (ENSSBOG00000031557) #12	ENSSBOG00000022919	KLHL32 (ENSSBOG00000027745) #13	NDUFAF4 (ENSSBOG00000022582) #15	GPR63 (ENSSBOG00000016862) #16	FHL5 (ENSSBOG00000015413) #17	UFL1 (ENSSBOG00000019048) #18	FUT9 (ENSSBOG00000014527) #19	MANEA (ENSSBOG00000033159) #20	ENSSBOG00000035573	EPHA7 (ENSSBOG00000031938) #22	ENSSBOG00000029795	ENSSBOG00000013925	ENSSBOG00000025608	MAP3K7 (ENSSBOG00000032871) #23	BACH2 (ENSSBOG00000022600) #24	GJA10 (ENSSBOG00000021972) #25	CASP8AP2 (ENSSBOG00000019082) #26	MDN1 (ENSSBOG00000035701) #27	ENSSBOG00000027684	LYRM2 (ENSSBOG00000023246) #28	ANKRD6 (ENSSBOG00000030673) #29	ENSSBOG00000027255	RRAGD (ENSSBOG00000035818) #30	UBE2J1 (ENSSBOG00000016402) #31	GABRR2 (ENSSBOG00000034315) #32
Mas night monkey	MODERN SPECIES	1003	FBXL4 (ENSANAG00000033454) #10	ENSANAG00000036164	ENSANAG00000035355	ENSANAG00000020850	MMS22L (ENSANAG00000023546) #12	KLHL32 (ENSANAG00000025728) #13	ENSANAG00000021826 #15	GPR63 (ENSANAG00000020144) #16	ENSANAG00000020162	FHL5 (ENSANAG00000029280) #17	UFL1 (ENSANAG00000009120) #18	FUT9 (ENSANAG00000025782) #19	MANEA (ENSANAG00000030909) #20	ENSANAG00000026520	ENSANAG00000037264	EPHA7 (ENSANAG00000025851) #22	MAP3K7 (ENSANAG00000026953) #23	BACH2 (ENSANAG00000020444) #24	GJA10 (ENSANAG00000024124) #25	CASP8AP2 (ENSANAG00000021679) #26	MDN1 (ENSANAG00000034484) #27	LYRM2 (ENSANAG00000033734) #28	ANKRD6 (ENSANAG00000035580) #29	ENSANAG00000035891	RRAGD (ENSANAG00000023087) #30	UBE2J1 (ENSANAG00000023523) #31	GABRR2 (ENSANAG00000027407) #32	PM20D2 (ENSANAG00000028063) #34	SRSF12 (ENSANAG00000023238) #35	ENSANAG00000027710 #36	ENSANAG00000001631
Tarsier	MODERN SPECIES	4386																EPHA7 (ENSTSYG00000005245) #22	ENSTSYG00000036746	ENSTSYG00000035143	ENSTSYG00000008220
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00910000147078	ENSGT00530000063881.a.a.l #36
Bushbaby	MODERN SPECIES	233																EPHA7 (ENSOGAG00000001945) #22	MAP3K7 (ENSOGAG00000006039) #23	BACH2 (ENSOGAG00000024390) #24	GJA10 (ENSOGAG00000024955) #25	CASP8AP2 (ENSOGAG00000016586) #26	MDN1 (ENSOGAG00000006653) #27	LYRM2 (ENSOGAG00000034900) #28	ANKRD6 (ENSOGAG00000017082) #29	RRAGD (ENSOGAG00000006726) #30	UBE2J1 (ENSOGAG00000009406) #31	ENSOGAG00000025025	GABRR2 (ENSOGAG00000009400) #32	GABRR1 (ENSOGAG00000002824) #33	PM20D2 (ENSOGAG00000005200) #34	SRSF12 (ENSOGAG00000006421) #35	PNRC1 (ENSOGAG00000006418) #36
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00390000000673.b.v.a.a	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00910000147078
Mouse lemur	MODERN SPECIES	28	USP45 (ENSMICG00000013266)	PNISR (ENSMICG00000027275) #7	COQ3 (ENSMICG00000006818) #8	FAXC (ENSMICG00000006809) #9	FBXL4 (ENSMICG00000038579) #10	MMS22L (ENSMICG00000015759) #12	KLHL32 (ENSMICG00000015742) #13	ENSMICG00000016773 ##36	NDUFAF4 (ENSMICG00000043550) #15	GPR63 (ENSMICG00000048052) #16	FHL5 (ENSMICG00000009176) #17	UFL1 (ENSMICG00000009169) #18	FUT9 (ENSMICG00000048006) #19	MANEA (ENSMICG00000003434) #20	ENSMICG00000037653	EPHA7 (ENSMICG00000016493) #22	ENSMICG00000046432	MAP3K7 (ENSMICG00000002723) #23	ENSMICG00000027444	BACH2 (ENSMICG00000033104) #24	GJA10 (ENSMICG00000045195) #25	CASP8AP2 (ENSMICG00000032939) #26	MDN1 (ENSMICG00000012232) #27	LYRM2 (ENSMICG00000026997) #28	ANKRD6 (ENSMICG00000012220) #29	ENSMICG00000044913	ENSMICG00000013072 #30	UBE2J1 (ENSMICG00000013060) #31	GABRR2 (ENSMICG00000013053) #32	GABRR1 (ENSMICG00000013041) #33	PM20D2 (ENSMICG00000029652) #34
Lemuriformes_a	ANCESTRAL SPECIES	176	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22
Greater bamboo lemur	MODERN SPECIES	1119										GPR63 (ENSPSMG00000015864) #16	FHL5 (ENSPSMG00000015858) #17	UFL1 (ENSPSMG00000015836) #18	FUT9 (ENSPSMG00000015770) #19	MANEA (ENSPSMG00000015753) #20	ENSPSMG00000015723	EPHA7 (ENSPSMG00000015710) #22
Coquerels sifaka	MODERN SPECIES	769																ENSPCOG00000016114 #22
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000164385.a.b	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00940000164601	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Cetacea	ANCESTRAL SPECIES	18	ENSGT00940000164601	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00390000000475.vb.b	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a.o #36	ENSGT00940000156953 #37
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00390000000475.vb.b	ENSGT00940000160189 #22	ENSGT00390000013048.q.b.b	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT00620000088063 #26	ENSGT01090000260070.D #25	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a.o #36
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00390000000475.vb.b	ENSGT00940000160189 #22	ENSGT00940000153378.b.b.f	ENSGT00390000013048.q.b.b	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT00620000088063 #26	ENSGT01090000260070.D #25	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00940000153052.c.b.a.b.k.a.a.b	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00390000000475.vb.b	ENSGT00940000160189 #22	ENSGT00940000153378.b.b.f	ENSGT00390000013048.q.b.b	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT00620000088063 #26	ENSGT01090000260070.D #25	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35
Narwhal	MODERN SPECIES	301	COQ3 (ENSMMNG00015009635) #8	FAXC (ENSMMNG00015009621) #9	FBXL4 (ENSMMNG00015009601) #10	POU3F2 (ENSMMNG00015009596) #11	ENSMMNG00015009584	MMS22L (ENSMMNG00015009572) #12	ENSMMNG00015009563	KLHL32 (ENSMMNG00015009546) #13	NDUFAF4 (ENSMMNG00015009535) #15	GPR63 (ENSMMNG00015009528) #16	FHL5 (ENSMMNG00015009515) #17	UFL1 (ENSMMNG00015009485) #18	ENSMMNG00015009473	FUT9 (ENSMMNG00015009462) #19	MANEA (ENSMMNG00015009453) #20	EPHA7 (ENSMMNG00015009430) #22	ENSMMNG00015009418	ENSMMNG00015009405	ENSMMNG00015009402	MAP3K7 (ENSMMNG00015009366) #23	BACH2 (ENSMMNG00015009351) #24	CASP8AP2 (ENSMMNG00015009338) #26	GJA10 (ENSMMNG00015009331) #25	MDN1 (ENSMMNG00015009226) #27	LYRM2 (ENSMMNG00015009170) #28	ANKRD6 (ENSMMNG00015009118) #29	RRAGD (ENSMMNG00015009071) #30	ENSMMNG00015009067	UBE2J1 (ENSMMNG00015009055) #31	GABRR2 (ENSMMNG00015009044) #32	GABRR1 (ENSMMNG00015009028) #33
Beluga whale	MODERN SPECIES	80	COQ3 (ENSDLEG00000016636) #8	FAXC (ENSDLEG00000016622) #9	FBXL4 (ENSDLEG00000016608) #10	POU3F2 (ENSDLEG00000016603) #11	ENSDLEG00000016590	ENSDLEG00000016567 #12	KLHL32 (ENSDLEG00000016517) #13	NDUFAF4 (ENSDLEG00000016486) #15	GPR63 (ENSDLEG00000016479) #16	FHL5 (ENSDLEG00000016466) #17	UFL1 (ENSDLEG00000016431) #18	ENSDLEG00000016425	FUT9 (ENSDLEG00000016416) #19	MANEA (ENSDLEG00000016408) #20	ENSDLEG00000016395	EPHA7 (ENSDLEG00000016378) #22	LY6E (ENSDLEG00000019478)	ENSDLEG00000019466	MAP3K7 (ENSDLEG00000019447) #23	BACH2 (ENSDLEG00000019443) #24	CASP8AP2 (ENSDLEG00000019439) #26	GJA10 (ENSDLEG00000019437) #25	MDN1 (ENSDLEG00000019356) #27	LYRM2 (ENSDLEG00000019328) #28	ANKRD6 (ENSDLEG00000019306) #29	RRAGD (ENSDLEG00000019287) #30	UBE2J1 (ENSDLEG00000019282) #31	GABRR2 (ENSDLEG00000019256) #32	GABRR1 (ENSDLEG00000019225) #33	PM20D2 (ENSDLEG00000019205) #34	SRSF12 (ENSDLEG00000019186) #35
Vaquita	MODERN SPECIES	3	PNISR (ENSPSNG00000017222) #7	COQ3 (ENSPSNG00000017302) #8	FAXC (ENSPSNG00000017384) #9	FBXL4 (ENSPSNG00000017467) #10	POU3F2 (ENSPSNG00000017509) #11	MMS22L (ENSPSNG00000017548) #12	KLHL32 (ENSPSNG00000004483) #13	NDUFAF4 (ENSPSNG00000004520) #15	GPR63 (ENSPSNG00000004544) #16	FHL5 (ENSPSNG00000004559) #17	UFL1 (ENSPSNG00000004593) #18	ENSPSNG00000004641	FUT9 (ENSPSNG00000004680) #19	MANEA (ENSPSNG00000004706) #20	ENSPSNG00000004826	EPHA7 (ENSPSNG00000004863) #22	ENSPSNG00000004891	ENSPSNG00000004923	ENSPSNG00000004983	BACH2 (ENSPSNG00000005033) #24	CASP8AP2 (ENSPSNG00000005060) #26	GJA10 (ENSPSNG00000005086) #25	MDN1 (ENSPSNG00000005154) #27	LYRM2 (ENSPSNG00000005242) #28	ANKRD6 (ENSPSNG00000005304) #29	RRAGD (ENSPSNG00000005377) #30	ENSPSNG00000005417	UBE2J1 (ENSPSNG00000005444) #31	GABRR2 (ENSPSNG00000005480) #32	GABRR1 (ENSPSNG00000005535) #33	PM20D2 (ENSPSNG00000005581) #34
Dolphin	MODERN SPECIES	4621																EPHA7 (ENSTTRG00000016063) #22
Sperm whale	MODERN SPECIES	1	USP45 (ENSPCTG00005017566)	PNISR (ENSPCTG00005017617) #7	COQ3 (ENSPCTG00005017704) #8	FAXC (ENSPCTG00005017812) #9	FBXL4 (ENSPCTG00005017834) #10	POU3F2 (ENSPCTG00005017877) #11	MMS22L (ENSPCTG00005017935) #12	KLHL32 (ENSPCTG00005018091) #13	NDUFAF4 (ENSPCTG00005018336) #15	GPR63 (ENSPCTG00005018376) #16	FHL5 (ENSPCTG00005018387) #17	UFL1 (ENSPCTG00005018456) #18	FUT9 (ENSPCTG00005018516) #19	MANEA (ENSPCTG00005018534) #20	ENSPCTG00005018576	EPHA7 (ENSPCTG00005018592) #22	MAP3K7 (ENSPCTG00005008798) #23	ENSPCTG00005009179 #24	CASP8AP2 (ENSPCTG00005009208) #26	MDN1 (ENSPCTG00005009355) #27	LYRM2 (ENSPCTG00005011162) #28	ANKRD6 (ENSPCTG00005011245) #29	RRAGD (ENSPCTG00005011867) #30	UBE2J1 (ENSPCTG00005011919) #31	GABRR2 (ENSPCTG00005011973) #32	GABRR1 (ENSPCTG00005012072) #33	PM20D2 (ENSPCTG00005012229) #34	SRSF12 (ENSPCTG00005012270) #35	PNRC1 (ENSPCTG00005012288) #36	RNGTT (ENSPCTG00005012333) #37	ENSPCTG00005012397
Blue whale	MODERN SPECIES	3	PNISR (ENSBMSG00010009388) #7	COQ3 (ENSBMSG00010009417) #8	FAXC (ENSBMSG00010009429) #9	FBXL4 (ENSBMSG00010009444) #10	POU3F2 (ENSBMSG00010009453) #11	MMS22L (ENSBMSG00010009479) #12	KLHL32 (ENSBMSG00010009564) #13	NDUFAF4 (ENSBMSG00010009703) #15	GPR63 (ENSBMSG00010009713) #16	FHL5 (ENSBMSG00010009724) #17	UFL1 (ENSBMSG00010009738) #18	FUT9 (ENSBMSG00010009753) #19	MANEA (ENSBMSG00010009767) #20	ENSBMSG00010009776	ENSBMSG00010009783	EPHA7 (ENSBMSG00010009802) #22	ENSBMSG00010009879	MAP3K7 (ENSBMSG00010009904) #23	BACH2 (ENSBMSG00010009952) #24	GJA10 (ENSBMSG00010009965) #25	CASP8AP2 (ENSBMSG00010009976) #26	MDN1 (ENSBMSG00010010010) #27	LYRM2 (ENSBMSG00010010072) #28	ANKRD6 (ENSBMSG00010010104) #29	RRAGD (ENSBMSG00010010138) #30	UBE2J1 (ENSBMSG00010010166) #31	GABRR2 (ENSBMSG00010010193) #32	GABRR1 (ENSBMSG00010010211) #33	PM20D2 (ENSBMSG00010010237) #34	ENSBMSG00010010248	SRSF12 (ENSBMSG00010010260) #35
Pecora	ANCESTRAL SPECIES	19	ENSGT00940000164601	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Percora_a	ANCESTRAL SPECIES	21	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.a #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00950000184876	ENSGT00940000160189 #22	ENSGT00940000174032	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Bovidae	ANCESTRAL SPECIES	21	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.a #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00950000184876	ENSGT00940000160189 #22	ENSGT00940000174032	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Bovinae	ANCESTRAL SPECIES	31	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.a #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00950000184876	ENSGT00940000160189 #22	ENSGT00940000174032	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
American bison	DUPLICATION
American bison	DUPLICATION
American bison	MODERN SPECIES	2973	COQ3 (ENSBBBG00000005393) #8	FAXC (ENSBBBG00000019944) #9	FBXL4 (ENSBBBG00000019956) #10	ENSBBBG00000005119 #11	ENSBBBG00000019962	MMS22L (ENSBBBG00000020025) #12	KLHL32 (ENSBBBG00000005436) #13	NDUFAF4 (ENSBBBG00000020115) #15	GPR63 (ENSBBBG00000020122) #16	FHL5 (ENSBBBG00000020131) #17	UFL1 (ENSBBBG00000005072) #18	FUT9 (ENSBBBG00000020143) #19	MANEA (ENSBBBG00000020146) #20	ENSBBBG00000020157	ENSBBBG00000008391 #22	ENSBBBG00000020181 #22	ENSBBBG00000020189 #22	ENSBBBG00000020198	MAP3K7 (ENSBBBG00000000569) #23	BACH2 (ENSBBBG00000000547) #24	GJA10 (ENSBBBG00000000542) #25	CASP8AP2 (ENSBBBG00000000534) #26	MDN1 (ENSBBBG00000020587) #27	LYRM2 (ENSBBBG00000007919) #28	ANKRD6 (ENSBBBG00000020742) #29	RRAGD (ENSBBBG00000020760) #30	UBE2J1 (ENSBBBG00000007386) #31	GABRR2 (ENSBBBG00000020785) #32	GABRR1 (ENSBBBG00000020828) #33	PM20D2 (ENSBBBG00000020844) #34	SRSF12 (ENSBBBG00000005613) #35
American bison	MODERN SPECIES	2973	FAXC (ENSBBBG00000019944) #9	FBXL4 (ENSBBBG00000019956) #10	ENSBBBG00000005119 #11	ENSBBBG00000019962	MMS22L (ENSBBBG00000020025) #12	KLHL32 (ENSBBBG00000005436) #13	NDUFAF4 (ENSBBBG00000020115) #15	GPR63 (ENSBBBG00000020122) #16	FHL5 (ENSBBBG00000020131) #17	UFL1 (ENSBBBG00000005072) #18	FUT9 (ENSBBBG00000020143) #19	MANEA (ENSBBBG00000020146) #20	ENSBBBG00000020157	ENSBBBG00000008391 #22	ENSBBBG00000020181 #22	ENSBBBG00000020189 #22	ENSBBBG00000020198	MAP3K7 (ENSBBBG00000000569) #23	BACH2 (ENSBBBG00000000547) #24	GJA10 (ENSBBBG00000000542) #25	CASP8AP2 (ENSBBBG00000000534) #26	MDN1 (ENSBBBG00000020587) #27	LYRM2 (ENSBBBG00000007919) #28	ANKRD6 (ENSBBBG00000020742) #29	RRAGD (ENSBBBG00000020760) #30	UBE2J1 (ENSBBBG00000007386) #31	GABRR2 (ENSBBBG00000020785) #32	GABRR1 (ENSBBBG00000020828) #33	PM20D2 (ENSBBBG00000020844) #34	SRSF12 (ENSBBBG00000005613) #35	PNRC1 (ENSBBBG00000020866) #36
American bison	MODERN SPECIES	2973	PNISR (ENSBBBG00000019913) #7	COQ3 (ENSBBBG00000005393) #8	FAXC (ENSBBBG00000019944) #9	FBXL4 (ENSBBBG00000019956) #10	ENSBBBG00000005119 #11	ENSBBBG00000019962	MMS22L (ENSBBBG00000020025) #12	KLHL32 (ENSBBBG00000005436) #13	NDUFAF4 (ENSBBBG00000020115) #15	GPR63 (ENSBBBG00000020122) #16	FHL5 (ENSBBBG00000020131) #17	UFL1 (ENSBBBG00000005072) #18	FUT9 (ENSBBBG00000020143) #19	MANEA (ENSBBBG00000020146) #20	ENSBBBG00000020157	ENSBBBG00000008391 #22	ENSBBBG00000020181 #22	ENSBBBG00000020189 #22	ENSBBBG00000020198	MAP3K7 (ENSBBBG00000000569) #23	BACH2 (ENSBBBG00000000547) #24	GJA10 (ENSBBBG00000000542) #25	CASP8AP2 (ENSBBBG00000000534) #26	MDN1 (ENSBBBG00000020587) #27	LYRM2 (ENSBBBG00000007919) #28	ANKRD6 (ENSBBBG00000020742) #29	RRAGD (ENSBBBG00000020760) #30	UBE2J1 (ENSBBBG00000007386) #31	GABRR2 (ENSBBBG00000020785) #32	GABRR1 (ENSBBBG00000020828) #33	PM20D2 (ENSBBBG00000020844) #34
Bos	ANCESTRAL SPECIES	19	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.a #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00950000184876	ENSGT00940000154647.i.a.a.a.b	ENSGT00940000160189 #22	ENSGT00940000174032	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Bos_b	ANCESTRAL SPECIES	24	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.a #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00950000184876	ENSGT00940000154647.i.a.a.a.b	ENSGT00940000160189 #22	ENSGT00940000174032	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01100000263481.n.a.a.a.a.a.b.b.a	ENSGT00940000160519 #35
Cow	MODERN SPECIES	28	FAXC (ENSBTAG00000044061) #9	FBXL4 (ENSBTAG00000005729) #10	POU3F2 (ENSBTAG00000024773) #11	MMS22L (ENSBTAG00000000629) #12	KLHL32 (ENSBTAG00000005301) #13	NDUFAF4 (ENSBTAG00000003174) #15	GPR63 (ENSBTAG00000002915) #16	FHL5 (ENSBTAG00000001803) #17	UFL1 (ENSBTAG00000020410) #18	ENSBTAG00000051626	ENSBTAG00000051581	FUT9 (ENSBTAG00000007989) #19	MANEA (ENSBTAG00000005026) #20	ENSBTAG00000033083	ENSBTAG00000003743	EPHA7 (ENSBTAG00000021420) #22	ENSBTAG00000055091	MAP3K7 (ENSBTAG00000002625) #23	BACH2 (ENSBTAG00000020713) #24	GJA10 (ENSBTAG00000011315) #25	CASP8AP2 (ENSBTAG00000011313) #26	MDN1 (ENSBTAG00000001644) #27	LYRM2 (ENSBTAG00000026604) #28	ANKRD6 (ENSBTAG00000003455) #29	ENSBTAG00000050934	RRAGD (ENSBTAG00000018438) #30	UBE2J1 (ENSBTAG00000018436) #31	GABRR1 (ENSBTAG00000011672) #32	PM20D2 (ENSBTAG00000011667) #34	ENSBTAG00000049831	SRSF12 (ENSBTAG00000046235) #35
Hybrid Bos Indicus	MODERN SPECIES	28	PNISR (ENSBIXG00005030498) #7	COQ3 (ENSBIXG00005030514) #8	FAXC (ENSBIXG00005030527) #9	FBXL4 (ENSBIXG00005030544) #10	POU3F2 (ENSBIXG00005030555) #11	MMS22L (ENSBIXG00005030633) #12	KLHL32 (ENSBIXG00005030681) #13	NDUFAF4 (ENSBIXG00005030722) #15	GPR63 (ENSBIXG00005030728) #16	FHL5 (ENSBIXG00005030746) #17	UFL1 (ENSBIXG00005030761) #18	ENSBIXG00005030792 #19	MANEA (ENSBIXG00005030810) #20	ENSBIXG00005030830	ENSBIXG00005030843	EPHA7 (ENSBIXG00005030866) #22	ENSBIXG00005030893	MAP3K7 (ENSBIXG00005030985) #23	BACH2 (ENSBIXG00005031006) #24	GJA10 (ENSBIXG00005031010) #25	CASP8AP2 (ENSBIXG00005031017) #26	MDN1 (ENSBIXG00005031179) #27	LYRM2 (ENSBIXG00005031350) #28	ANKRD6 (ENSBIXG00005031359) #29	RRAGD (ENSBIXG00005031372) #30	UBE2J1 (ENSBIXG00005031377) #31	GABRR2 (ENSBIXG00005031385) #32	GABRR1 (ENSBIXG00005031395) #33	ENSBIXG00005031399 #34	ENSBIXG00005031403	SRSF12 (ENSBIXG00005031407) #35
Bos_a	ANCESTRAL SPECIES	18	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627.a #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00950000184876	ENSGT00940000154647.i.a.a.a.b	ENSGT00940000160189 #22	ENSGT00940000174032	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Domestic yak	MODERN SPECIES	1	COQ3 (ENSBGRG00000026518) #8	FAXC (ENSBGRG00000026514) #9	FBXL4 (ENSBGRG00000026508) #10	POU3F2 (ENSBGRG00000026502) #11	ENSBGRG00000026495	MMS22L (ENSBGRG00000026462) #12	KLHL32 (ENSBGRG00000026432) #13	NDUFAF4 (ENSBGRG00000026419) #15	GPR63 (ENSBGRG00000026414) #16	FHL5 (ENSBGRG00000026411) #17	UFL1 (ENSBGRG00000026399) #18	ENSBGRG00000026392	MANEA (ENSBGRG00000026383) #20	ENSBGRG00000026378	ENSBGRG00000026363	EPHA7 (ENSBGRG00000026337) #22	ENSBGRG00000026331	ENSBGRG00000026330	MAP3K7 (ENSBGRG00000026265) #23	BACH2 (ENSBGRG00000026244) #24	GJA10 (ENSBGRG00000026240) #25	CASP8AP2 (ENSBGRG00000026235) #26	MDN1 (ENSBGRG00000024886) #27	LYRM2 (ENSBGRG00000024628) #28	ANKRD6 (ENSBGRG00000023879) #29	ENSBGRG00000023796	RRAGD (ENSBGRG00000023738) #30	UBE2J1 (ENSBGRG00000023687) #31	GABRR2 (ENSBGRG00000023477) #32	ENSBGRG00000023455	PM20D2 (ENSBGRG00000023359) #34
Wild yak	MODERN SPECIES	837															ENSBMUG00000012887	EPHA7 (ENSBMUG00000012864) #22	ENSBMUG00000012773
Caprinae	ANCESTRAL SPECIES		ENSGT00390000016211	ENSGT00530000063702.a	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000161995	ENSGT00940000163480	ENSGT00390000009978	ENSGT01060000248595.b.a.a	ENSGT00950000182939.a.b.a	ENSGT00940000160461	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000162777	ENSGT00940000156551	ENSGT00950000184876	ENSGT00940000160189 #22	ENSGT00940000174032	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Rambouillet Sheep	MODERN SPECIES	24	TSTD3 (ENSOARG00020006801)	USP45 (ENSOARG00020006844)	PNISR (ENSOARG00020007109) #7	COQ3 (ENSOARG00020007243) #8	FAXC (ENSOARG00020007328) #9	FBXL4 (ENSOARG00020007441) #10	POU3F2 (ENSOARG00020007533) #11	MMS22L (ENSOARG00020007563) #12	KLHL32 (ENSOARG00020007827) #13	ENSOARG00020008188 #15	GPR63 (ENSOARG00020008232) #16	FHL5 (ENSOARG00020008247) #17	UFL1 (ENSOARG00020008328) #18	FUT9 (ENSOARG00020008422) #19	ENSOARG00020008459	EPHA7 (ENSOARG00020008528) #22	ENSOARG00020008706	ENSOARG00020008732	MAP3K7 (ENSOARG00020008829) #23	BACH2 (ENSOARG00020009103) #24	GJA10 (ENSOARG00020009138) #25	CASP8AP2 (ENSOARG00020009190) #26	LYRM2 (ENSOARG00020009458) #27	ANKRD6 (ENSOARG00020011876) #29	ENSOARG00020012098	RRAGD (ENSOARG00020012117) #30	UBE2J1 (ENSOARG00020012200) #31	GABRR2 (ENSOARG00020012271) #32	GABRR1 (ENSOARG00020012407) #33	PM20D2 (ENSOARG00020012499) #34	SRSF12 (ENSOARG00020012590) #35
Goat	MODERN SPECIES	28	ENSCHIG00000010184 #9	FBXL4 (ENSCHIG00000016349) #10	POU3F2 (ENSCHIG00000008214) #11	MMS22L (ENSCHIG00000019370) #12	KLHL32 (ENSCHIG00000011484) #13	ENSCHIG00000019756 #15	GPR63 (ENSCHIG00000007995) #16	ENSCHIG00000024264	FHL5 (ENSCHIG00000010777) #17	UFL1 (ENSCHIG00000016763) #18	ENSCHIG00000014831	FUT9 (ENSCHIG00000004315) #19	ENSCHIG00000022283	MANEA (ENSCHIG00000015191) #20	ENSCHIG00000020259	EPHA7 (ENSCHIG00000020693) #22	ENSCHIG00000009618	ENSCHIG00000014680	ENSCHIG00000022626	ENSCHIG00000022738	MAP3K7 (ENSCHIG00000011803) #23	BACH2 (ENSCHIG00000022370) #24	GJA10 (ENSCHIG00000014099) #25	CASP8AP2 (ENSCHIG00000018023) #26	MDN1 (ENSCHIG00000020936) #27	LYRM2 (ENSCHIG00000022568) #28	ANKRD6 (ENSCHIG00000016244) #29	RRAGD (ENSCHIG00000020147) #30	UBE2J1 (ENSCHIG00000012861) #31	GABRR2 (ENSCHIG00000013352) #32	GABRR1 (ENSCHIG00000008832) #33
Siberian musk deer	MODERN SPECIES	58															ENSMMSG00000013190	EPHA7 (ENSMMSG00000013204) #22	ENSMMSG00000013274	ENSMMSG00000013291	ENSMMSG00000013306	ENSMMSG00000013326	MAP3K7 (ENSMMSG00000013352) #23	BACH2 (ENSMMSG00000013447) #24	GJA10 (ENSMMSG00000013470) #25	CASP8AP2 (ENSMMSG00000009688) #26	MDN1 (ENSMMSG00000009757) #27	LYRM2 (ENSMMSG00000010462) #28	ANKRD6 (ENSMMSG00000010500) #29	RRAGD (ENSMMSG00000010837) #30	ENSMMSG00000010882 #31	GABRR2 (ENSMMSG00000010924) #32	GABRR1 (ENSMMSG00000010982) #33
Yarkand deer	MODERN SPECIES	20	TSTD3 (ENSCHYG00000025097)	USP45 (ENSCHYG00000025122)	PNISR (ENSCHYG00000025150) #7	COQ3 (ENSCHYG00000025175) #8	FAXC (ENSCHYG00000025221) #9	FBXL4 (ENSCHYG00000025242) #10	POU3F2 (ENSCHYG00000025261) #11	MMS22L (ENSCHYG00000025279) #12	KLHL32 (ENSCHYG00000025369) #13	NDUFAF4 (ENSCHYG00000025688) #15	FHL5 (ENSCHYG00000025707) #17	UFL1 (ENSCHYG00000025727) #18	FUT9 (ENSCHYG00000025764) #19	MANEA (ENSCHYG00000025768) #20	ENSCHYG00000013893	EPHA7 (ENSCHYG00000013949) #22	ENSCHYG00000014181	MAP3K7 (ENSCHYG00000014445) #23	BACH2 (ENSCHYG00000014828) #24	GJA10 (ENSCHYG00000014902) #25	CASP8AP2 (ENSCHYG00000014964) #26	MDN1 (ENSCHYG00000015140) #27	ENSCHYG00000015660 #28	ANKRD6 (ENSCHYG00000015728) #29	RRAGD (ENSCHYG00000016025) #30	UBE2J1 (ENSCHYG00000016187) #31	GABRR2 (ENSCHYG00000016264) #32	GABRR1 (ENSCHYG00000016366) #33	PM20D2 (ENSCHYG00000016435) #34	SRSF12 (ENSCHYG00000016627) #35	RNGTT (ENSCHYG00000016761) #37
Camelidae	ANCESTRAL SPECIES	26	ENSGT00940000163155	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT00620000088063 #26	ENSGT01090000260070.D #25	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Arabian camel	MODERN SPECIES	34	CCNC (ENSCDRG00005014798)	ENSCDRG00005015124	USP45 (ENSCDRG00005015163)	ENSCDRG00005015288	PNISR (ENSCDRG00005015317) #7	COQ3 (ENSCDRG00005015402) #8	FAXC (ENSCDRG00005015492) #9	FBXL4 (ENSCDRG00005015542) #10	MMS22L (ENSCDRG00005015723) #12	KLHL32 (ENSCDRG00005015893) #13	NDUFAF4 (ENSCDRG00005016114) #15	FHL5 (ENSCDRG00005016145) #17	UFL1 (ENSCDRG00005016186) #18	FUT9 (ENSCDRG00005016245) #19	MANEA (ENSCDRG00005016287) #20	EPHA7 (ENSCDRG00005016323) #22	ENSCDRG00005016450	MAP3K7 (ENSCDRG00005016534) #23	BACH2 (ENSCDRG00005017369) #24	CASP8AP2 (ENSCDRG00005017411) #26	GJA10 (ENSCDRG00005017475) #25	MDN1 (ENSCDRG00005017545) #27	LYRM2 (ENSCDRG00005017690) #28	ANKRD6 (ENSCDRG00005017721) #29	RRAGD (ENSCDRG00005017800) #30	UBE2J1 (ENSCDRG00005017848) #31	GABRR2 (ENSCDRG00005017899) #32	GABRR1 (ENSCDRG00005017956) #33	PM20D2 (ENSCDRG00005017989) #34	SRSF12 (ENSCDRG00005018010) #35	PNRC1 (ENSCDRG00005018021) #36
Alpaca	MODERN SPECIES	547																EPHA7 (ENSVPAG00000011612) #22
Suina	ANCESTRAL SPECIES	18	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Pig	MODERN SPECIES		ENSSSCG00000050732	PNISR (ENSSSCG00000037594) #7	COQ3 (ENSSSCG00000004349) #8	FBXL4 (ENSSSCG00000004347) #10	POU3F2 (ENSSSCG00000056101) #11	ENSSSCG00000044799	ENSSSCG00000049009	MMS22L (ENSSSCG00000004344) #12	KLHL32 (ENSSSCG00000027002) #13	NDUFAF4 (ENSSSCG00000004342) #15	GPR63 (ENSSSCG00000035240) #16	FHL5 (ENSSSCG00000004340) #17	UFL1 (ENSSSCG00000004339) #18	ENSSSCG00000042849	MANEA (ENSSSCG00000035648) #20	EPHA7 (ENSSSCG00000004336) #22	ENSSSCG00000057380	MAP3K7 (ENSSSCG00000004334) #23	ENSSSCG00000044269	BACH2 (ENSSSCG00000004332) #24	GJA10 (ENSSSCG00000004330) #25	CASP8AP2 (ENSSSCG00000004331) #26	ENSSSCG00000054691	MDN1 (ENSSSCG00000004328) #27	LYRM2 (ENSSSCG00000004324) #28	ANKRD6 (ENSSSCG00000004322) #29	RRAGD (ENSSSCG00000004318) #30	UBE2J1 (ENSSSCG00000004317) #31	GABRR2 (ENSSSCG00000054854) #32	GABRR1 (ENSSSCG00000024249) #33	PM20D2 (ENSSSCG00000004314) #34
Chacoan peccary	MODERN SPECIES	60	USP45 (ENSCWAG00000016345)	PNISR (ENSCWAG00000016193) #7	COQ3 (ENSCWAG00000016156) #8	FAXC (ENSCWAG00000016070) #9	FBXL4 (ENSCWAG00000016030) #10	POU3F2 (ENSCWAG00000016022) #11	MMS22L (ENSCWAG00000015699) #12	KLHL32 (ENSCWAG00000014845) #13	NDUFAF4 (ENSCWAG00000014782) #15	GPR63 (ENSCWAG00000014769) #16	FHL5 (ENSCWAG00000014715) #17	UFL1 (ENSCWAG00000014651) #18	FUT9 (ENSCWAG00000014636) #19	MANEA (ENSCWAG00000014597) #20	ENSCWAG00000014567	EPHA7 (ENSCWAG00000014418) #22	MAP3K7 (ENSCWAG00000014214) #23	BACH2 (ENSCWAG00000014171) #24	GJA10 (ENSCWAG00000014157) #25	CASP8AP2 (ENSCWAG00000014135) #26	MDN1 (ENSCWAG00000012540) #27	LYRM2 (ENSCWAG00000012454) #28	ANKRD6 (ENSCWAG00000011657) #29	RRAGD (ENSCWAG00000011523) #30	UBE2J1 (ENSCWAG00000011484) #31	GABRR2 (ENSCWAG00000011400) #32	GABRR1 (ENSCWAG00000011241) #33	PM20D2 (ENSCWAG00000011164) #34	SRSF12 (ENSCWAG00000011121) #35	PNRC1 (ENSCWAG00000011089) #36	RNGTT (ENSCWAG00000011000) #37
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00940000170209	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Carnivora	ANCESTRAL SPECIES	4	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00940000170209	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Caniformia	ANCESTRAL SPECIES	3	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00940000170209	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00940000170209	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Ursidae	ANCESTRAL SPECIES	22	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275	ENSGT00940000162208 #11	ENSGT00940000170209	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00950000185306.a	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Ursus	ANCESTRAL SPECIES	131	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00910000147275.a	ENSGT00940000162208 #11	ENSGT00940000170209	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00950000185306.a	ENSGT00940000160189 #22
Polar bear	MODERN SPECIES	268	PNISR (ENSUMAG00000021583) #7	COQ3 (ENSUMAG00000021586) #8	FAXC (ENSUMAG00000021588) #9	FBXL4 (ENSUMAG00000021593) #10	ENSUMAG00000021595	ENSUMAG00000021596 #11	ENSUMAG00000021597	KLHL32 (ENSUMAG00000021603) #13	NDUFAF4 (ENSUMAG00000021610) #15	GPR63 (ENSUMAG00000021612) #16	FHL5 (ENSUMAG00000021613) #17	UFL1 (ENSUMAG00000021615) #18	FUT9 (ENSUMAG00000021619) #19	MANEA (ENSUMAG00000021627) #20	ENSUMAG00000021640	EPHA7 (ENSUMAG00000021654) #22
American black bear	MODERN SPECIES	1135																EPHA7 (ENSUAMG00000007337) #22
Giant Panda	MODERN SPECIES	1	FBXL4 (ENSAMEG00000011248) #10	ENSAMEG00000030876	POU3F2 (ENSAMEG00000011263) #11	ENSAMEG00000011268	ENSAMEG00000024597	MMS22L (ENSAMEG00000002533) #12	KLHL32 (ENSAMEG00000014557) #13	ENSAMEG00000027131 #15	GPR63 (ENSAMEG00000018802) #16	FHL5 (ENSAMEG00000000604) #17	UFL1 (ENSAMEG00000000542) #18	FUT9 (ENSAMEG00000019229) #19	ENSAMEG00000015467 #20	ENSAMEG00000028175	ENSAMEG00000028839	EPHA7 (ENSAMEG00000013161) #22	MAP3K7 (ENSAMEG00000003532) #23	BACH2 (ENSAMEG00000003595) #24	GJA10 (ENSAMEG00000026572) #25	CASP8AP2 (ENSAMEG00000003601) #26	ENSAMEG00000026496	MDN1 (ENSAMEG00000000581) #27	LYRM2 (ENSAMEG00000000580) #28	ANKRD6 (ENSAMEG00000000541) #29	RRAGD (ENSAMEG00000000521) #30	UBE2J1 (ENSAMEG00000000499) #31	GABRR2 (ENSAMEG00000000466) #32	PM20D2 (ENSAMEG00000000422) #34	SRSF12 (ENSAMEG00000000418) #35	PNRC1 (ENSAMEG00000000414) #36	RNGTT (ENSAMEG00000000368) #37
Mustelinae	ANCESTRAL SPECIES	26	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
American mink	MODERN SPECIES	29	PNISR (ENSNVIG00000000733) #7	ENSNVIG00000000753 #8	FAXC (ENSNVIG00000000759) #9	FBXL4 (ENSNVIG00000000772) #10	POU3F2 (ENSNVIG00000000788) #11	ENSNVIG00000000796	E2QRD4 (ENSNVIG00000000804) #12	KLHL32 (ENSNVIG00000000904) #13	NDUF4 (ENSNVIG00000000993) #15	GPR63 (ENSNVIG00000001031) #16	FHL5 (ENSNVIG00000001039) #17	UFL1 (ENSNVIG00000001053) #18	FUT9 (ENSNVIG00000001082) #19	ENSNVIG00000001095	MANEA (ENSNVIG00000001132) #20	EPHA7 (ENSNVIG00000001205) #22	ENSNVIG00000001235	MAP3K7 (ENSNVIG00000001249) #23	ENSNVIG00000001407	BACH2 (ENSNVIG00000001430) #24	GJA10 (ENSNVIG00000001447) #25	CASP8AP2 (ENSNVIG00000001457) #26	MDN1 (ENSNVIG00000001470) #27	ENSNVIG00000001789 #28	ANKRD6 (ENSNVIG00000001819) #29	RRAGD (ENSNVIG00000002154) #30	UBE2J1 (ENSNVIG00000002166) #31	GABRR2 (ENSNVIG00000002185) #32	GABRR1 (ENSNVIG00000002222) #33	PM20D2 (ENSNVIG00000002281) #34	SRSF12 (ENSNVIG00000002300) #35
Ferret	MODERN SPECIES	287																EPHA7 (ENSMPUG00000009063) #22	MAP3K7 (ENSMPUG00000009090) #23	BACH2 (ENSMPUG00000009102) #24	GJA10 (ENSMPUG00000009113) #25	CASP8AP2 (ENSMPUG00000009120) #26	ENSMPUG00000009131 #27	ENSMPUG00000009140 #27	ANKRD6 (ENSMPUG00000009205) #29	RRAGD (ENSMPUG00000009222) #30	UBE2J1 (ENSMPUG00000009233) #31	GABRR2 (ENSMPUG00000009242) #32	GABRR1 (ENSMPUG00000009331) #33	PM20D2 (ENSMPUG00000009339) #34	SRSF12 (ENSMPUG00000009344) #35	PNRC1 (ENSMPUG00000009350) #36	RNGTT (ENSMPUG00000009351) #37
Canidae	ANCESTRAL SPECIES	6	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000163337.b.b	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Canis_lupus	ANCESTRAL SPECIES	11	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000002144.d	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000163337.b.b	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a.q #36	ENSGT00940000156953 #37
Dingo	MODERN SPECIES	370	ENSCAFG00020016776	PNISR (ENSCAFG00020016765) #7	COQ3 (ENSCAFG00020016760) #8	FAXC (ENSCAFG00020016750) #9	FBXL4 (ENSCAFG00020016742) #10	POU3F2 (ENSCAFG00020016738) #11	ENSCAFG00020016728	KLHL32 (ENSCAFG00020016702) #13	NDUFAF4 (ENSCAFG00020016697) #15	GPR63 (ENSCAFG00020016694) #16	FHL5 (ENSCAFG00020016686) #17	UFL1 (ENSCAFG00020016268) #18	FUT9 (ENSCAFG00020016261) #19	ENSCAFG00020016257	ENSCAFG00020016251 #20	EPHA7 (ENSCAFG00020016245) #22	ENSCAFG00020016241	ENSCAFG00020016240 #23	ENSCAFG00020016238	BACH2 (ENSCAFG00020016233) #24	GJA10 (ENSCAFG00020016231) #25	CASP8AP2 (ENSCAFG00020016222) #26	MDN1 (ENSCAFG00020016117) #27	LYRM2 (ENSCAFG00020016108) #28	ANKRD6 (ENSCAFG00020016043) #29	RRAGD (ENSCAFG00020016028) #30	UBE2J1 (ENSCAFG00020016018) #31	GABRR2 (ENSCAFG00020016007) #32	PM20D2 (ENSCAFG00020016003) #34	SRSF12 (ENSCAFG00020015999) #35	ENSCAFG00020015996 #36
Dog	MODERN SPECIES	3	COQ3 (ENSCAFG00845005564) #8	FAXC (ENSCAFG00845005522) #9	FBXL4 (ENSCAFG00845005491) #10	POU3F2 (ENSCAFG00845009467) #11	MMS22L (ENSCAFG00845009177) #12	KLHL32 (ENSCAFG00845008809) #13	ENSCAFG00845008713 #15	GPR63 (ENSCAFG00845008695) #16	FHL5 (ENSCAFG00845008651) #17	UFL1 (ENSCAFG00845008549) #18	FUT9 (ENSCAFG00845008503) #19	ENSCAFG00845008430	ENSCAFG00845008377	MANEA (ENSCAFG00845008347) #20	ENSCAFG00845008260	EPHA7 (ENSCAFG00845008210) #22	MAP3K7 (ENSCAFG00845008051) #23	BACH2 (ENSCAFG00845007986) #24	GJA10 (ENSCAFG00845007961) #25	CASP8AP2 (ENSCAFG00845007899) #26	MDN1 (ENSCAFG00845007335) #27	LYRM2 (ENSCAFG00845007103) #28	ANKRD6 (ENSCAFG00845006909) #29	RRAGD (ENSCAFG00845006807) #30	UBE2J1 (ENSCAFG00845006759) #31	GABRR1 (ENSCAFG00845006659) #32	PM20D2 (ENSCAFG00845006578) #34	SRSF12 (ENSCAFG00845006521) #35	ENSCAFG00845006449 #36	RNGTT (ENSCAFG00845006196) #37	ENSCAFG00845006099
Red fox	MODERN SPECIES	43	USP45 (ENSVVUG00000015099)	ENSVVUG00000015060	PNISR (ENSVVUG00000015048) #7	COQ3 (ENSVVUG00000015036) #8	FAXC (ENSVVUG00000015030) #9	FBXL4 (ENSVVUG00000015024) #10	ENSVVUG00000015013	MMS22L (ENSVVUG00000014995) #12	KLHL32 (ENSVVUG00000014969) #13	NDUFAF4 (ENSVVUG00000014961) #15	GPR63 (ENSVVUG00000014960) #16	FHL5 (ENSVVUG00000014956) #17	UFL1 (ENSVVUG00000014228) #18	FUT9 (ENSVVUG00000014185) #19	MANEA (ENSVVUG00000014165) #20	EPHA7 (ENSVVUG00000014132) #22	ENSVVUG00000014119	MAP3K7 (ENSVVUG00000014101) #23	ENSVVUG00000014098	BACH2 (ENSVVUG00000014083) #24	GJA10 (ENSVVUG00000014075) #25	CASP8AP2 (ENSVVUG00000014062) #26	ENSVVUG00000014055 #27
Felidae	ANCESTRAL SPECIES	5	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT01000000214434.B.b.e.a.a	ENSGT00950000185306	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000168340
Panthera	ANCESTRAL SPECIES	7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT01000000214434.B.b.e.a.a	ENSGT00950000185306	ENSGT00940000160189 #22	ENSGT00510000047029.hb.b	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Tiger	MODERN SPECIES	211	COQ3 (ENSPTIG00000014871) #8	FAXC (ENSPTIG00000014344) #9	FBXL4 (ENSPTIG00000013804) #10	ENSPTIG00000013287	MMS22L (ENSPTIG00000011552) #12	KLHL32 (ENSPTIG00000008581) #13	NDUFAF4 (ENSPTIG00000008338) #15	GPR63 (ENSPTIG00000002988) #16	FHL5 (ENSPTIG00000007683) #17	UFL1 (ENSPTIG00000007297) #18	FUT9 (ENSPTIG00000002945) #19	MANEA (ENSPTIG00000006699) #20	ENSPTIG00000002888	ENSPTIG00000002871	ENSPTIG00000005872	EPHA7 (ENSPTIG00000005606) #22
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT01000000214434.B.b.e.a.a	ENSGT00950000185306	ENSGT00940000160189 #22	ENSGT00510000047029.hb.b	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
leopard	MODERN SPECIES	8	FAXC (ENSPPRG00000002688) #9	FBXL4 (ENSPPRG00000003955) #10	ENSPPRG00000005436	MMS22L (ENSPPRG00000006961) #12	KLHL32 (ENSPPRG00000008719) #13	NDUFAF4 (ENSPPRG00000008944) #15	GPR63 (ENSPPRG00000019835) #16	FHL5 (ENSPPRG00000009641) #17	UFL1 (ENSPPRG00000010323) #18	FUT9 (ENSPPRG00000019962) #19	ENSPPRG00000011189	MANEA (ENSPPRG00000012275) #20	ENSPPRG00000019979	ENSPPRG00000012645	ENSPPRG00000012719	EPHA7 (ENSPPRG00000013359) #22	ENSPPRG00000020096	MAP3K7 (ENSPPRG00000021480) #23	BACH2 (ENSPPRG00000024203) #24	GJA10 (ENSPPRG00000024176) #25	CASP8AP2 (ENSPPRG00000023836) #26	MDN1 (ENSPPRG00000007843) #27	LYRM2 (ENSPPRG00000008951) #28	ANKRD6 (ENSPPRG00000011799) #29	RRAGD (ENSPPRG00000013175) #30	UBE2J1 (ENSPPRG00000013543) #31	GABRR2 (ENSPPRG00000013848) #32	GABRR1 (ENSPPRG00000016777) #33	PM20D2 (ENSPPRG00000018390) #34	SRSF12 (ENSPPRG00000018838) #35	PNRC1 (ENSPPRG00000020507) #36
lion	MODERN SPECIES	5	FAXC (ENSPLOG00000018136) #9	FBXL4 (ENSPLOG00000018081) #10	POU3F2 (ENSPLOG00000018042) #11	ENSPLOG00000017984	MMS22L (ENSPLOG00000017912) #12	KLHL32 (ENSPLOG00000017789) #13	NDUFAF4 (ENSPLOG00000017720) #15	GPR63 (ENSPLOG00000017706) #16	FHL5 (ENSPLOG00000017656) #17	UFL1 (ENSPLOG00000017606) #18	FUT9 (ENSPLOG00000017587) #19	MANEA (ENSPLOG00000017551) #20	ENSPLOG00000017526	ENSPLOG00000017509	ENSPLOG00000017491	EPHA7 (ENSPLOG00000017339) #22	ENSPLOG00000017254	MAP3K7 (ENSPLOG00000017159) #23	BACH2 (ENSPLOG00000017111) #24	GJA10 (ENSPLOG00000017087) #25	CASP8AP2 (ENSPLOG00000017057) #26	MDN1 (ENSPLOG00000016910) #27	LYRM2 (ENSPLOG00000016819) #28	ANKRD6 (ENSPLOG00000016230) #29	RRAGD (ENSPLOG00000016089) #30	UBE2J1 (ENSPLOG00000016012) #31	GABRR2 (ENSPLOG00000015910) #32	GABRR1 (ENSPLOG00000015726) #33	PM20D2 (ENSPLOG00000015642) #34	ENSPLOG00000015606 #35	PNRC1 (ENSPLOG00000015572) #36
Cat	MODERN SPECIES	236	FBXL4 (ENSFCAG00000012863) #10	POU3F2 (ENSFCAG00000022988) #11	ENSFCAG00000034525	ENSFCAG00000035980	MMS22L (ENSFCAG00000043637) #12	KLHL32 (ENSFCAG00000044028) #13	NDUFAF4 (ENSFCAG00000043301) #15	GPR63 (ENSFCAG00000028092) #16	FHL5 (ENSFCAG00000024633) #17	UFL1 (ENSFCAG00000007808) #18	FUT9 (ENSFCAG00000003297) #19	MANEA (ENSFCAG00000036280) #20	ENSFCAG00000030894	ENSFCAG00000000429	ENSFCAG00000034817	EPHA7 (ENSFCAG00000018481) #22	ENSFCAG00000046936	MAP3K7 (ENSFCAG00000030907) #23	BACH2 (ENSFCAG00000008901) #24	GJA10 (ENSFCAG00000008899) #25	CASP8AP2 (ENSFCAG00000027150) #26	MDN1 (ENSFCAG00000024717) #27	LYRM2 (ENSFCAG00000008885) #28	ANKRD6 (ENSFCAG00000008881) #29	RRAGD (ENSFCAG00000026428) #30	UBE2J1 (ENSFCAG00000028473) #31	GABRR2 (ENSFCAG00000044859) #32	GABRR1 (ENSFCAG00000009678) #33	PM20D2 (ENSFCAG00000014224) #34	SRSF12 (ENSFCAG00000029256) #35	PNRC1 (ENSFCAG00000039431) #36
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00910000147120	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Greater horseshoe bat	MODERN SPECIES	21	COQ3 (ENSRFEG00010002591) #8	FAXC (ENSRFEG00010002564) #9	FBXL4 (ENSRFEG00010002537) #10	POU3F2 (ENSRFEG00010002524) #11	ENSRFEG00010002515	ENSRFEG00010002509	MMS22L (ENSRFEG00010002485) #12	ENSRFEG00010002452	KLHL32 (ENSRFEG00010002386) #13	NDUFAF4 (ENSRFEG00010002322) #15	GPR63 (ENSRFEG00010002311) #16	FHL5 (ENSRFEG00010002299) #17	UFL1 (ENSRFEG00010002220) #18	FUT9 (ENSRFEG00010002196) #19	MANEA (ENSRFEG00010002169) #20	EPHA7 (ENSRFEG00010002115) #22	MAP3K7 (ENSRFEG00010002027) #23	BACH2 (ENSRFEG00010001974) #24	CASP8AP2 (ENSRFEG00010001895) #26	MDN1 (ENSRFEG00010001745) #27	LYRM2 (ENSRFEG00010001660) #28	ANKRD6 (ENSRFEG00010001567) #29	RRAGD (ENSRFEG00010001517) #30	UBE2J1 (ENSRFEG00010001468) #31	GABRR2 (ENSRFEG00010001440) #32	GABRR1 (ENSRFEG00010001411) #33	PM20D2 (ENSRFEG00010001387) #34	ENSRFEG00010001377	SRSF12 (ENSRFEG00010001363) #35	PNRC1 (ENSRFEG00010001346) #36	RNGTT (ENSRFEG00010001307) #37
Microbat	MODERN SPECIES	1033																EPHA7 (ENSMLUG00000005373) #22	MAP3K7 (ENSMLUG00000003344) #23	BACH2 (ENSMLUG00000001651) #24	CASP8AP2 (ENSMLUG00000001639) #26	MDN1 (ENSMLUG00000006776) #27	LYRM2 (ENSMLUG00000006773) #28	ANKRD6 (ENSMLUG00000006746) #29	RRAGD (ENSMLUG00000010534) #30	UBE2J1 (ENSMLUG00000010521) #31	GABRR2 (ENSMLUG00000010503) #32	GABRR1 (ENSMLUG00000001555) #33	PM20D2 (ENSMLUG00000001548) #34	SRSF12 (ENSMLUG00000001545) #35	PNRC1 (ENSMLUG00000005150) #36	ENSMLUG00000001499
Megabat	MODERN SPECIES	4408																EPHA7 (ENSPVAG00000010689) #22
Equus	ANCESTRAL SPECIES	29	ENSGT00940000157719	ENSGT00910000146889	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00390000017385.p	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT01090000263402	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Horse	MODERN SPECIES	1	PNISR (ENSECAG00000019782) #7	COQ3 (ENSECAG00000016788) #8	FAXC (ENSECAG00000016044) #9	FBXL4 (ENSECAG00000015268) #10	MMS22L (ENSECAG00000009576) #12	KLHL32 (ENSECAG00000023835) #13	NDUFAF4 (ENSECAG00000023456) #15	GPR63 (ENSECAG00000053424) #16	FHL5 (ENSECAG00000023174) #17	UFL1 (ENSECAG00000014582) #18	FUT9 (ENSECAG00000014562) #19	MANEA (ENSECAG00000013040) #20	ENSECAG00000035015	ENSECAG00000048232	ENSECAG00000036577	EPHA7 (ENSECAG00000021315) #22	MAP3K7 (ENSECAG00000010753) #23	BACH2 (ENSECAG00000010522) #24	GJA10 (ENSECAG00000000988) #25	CASP8AP2 (ENSECAG00000006638) #26	MDN1 (ENSECAG00000008291) #27	LYRM2 (ENSECAG00000058998) #28	ENSECAG00000046804	ENSECAG00000045429	ANKRD6 (ENSECAG00000021169) #29	RRAGD (ENSECAG00000015826) #30	UBE2J1 (ENSECAG00000012492) #31	GABRR1 (ENSECAG00000002796) #32	GABRR1 (ENSECAG00000059907) #33	PM20D2 (ENSECAG00000020890) #34	PNRC1 (ENSECAG00000044135) #36
Donkey	MODERN SPECIES	16	PNISR (ENSEASG00005006141) #7	COQ3 (ENSEASG00005006138) #8	FAXC (ENSEASG00005006137) #9	FBXL4 (ENSEASG00005006132) #10	ENSEASG00005031507	ENSEASG00005006121	ENSEASG00005006075	KLHL32 (ENSEASG00005025751) #13	NDUFAF4 (ENSEASG00005023899) #15	GPR63 (ENSEASG00005025897) #16	FHL5 (ENSEASG00005006061) #17	UFL1 (ENSEASG00005006057) #18	FUT9 (ENSEASG00005031320) #19	MANEA (ENSEASG00005006055) #20	ENSEASG00005006054	EPHA7 (ENSEASG00005006051) #22	MAP3K7 (ENSEASG00005006040) #23	BACH2 (ENSEASG00005006035) #24	GJA10 (ENSEASG00005006030) #25	CASP8AP2 (ENSEASG00005006023) #26	MDN1 (ENSEASG00005005849) #27	ANKRD6 (ENSEASG00005005722) #29	RRAGD (ENSEASG00005005702) #30	UBE2J1 (ENSEASG00005005697) #31	GABRR2 (ENSEASG00005005693) #32	GABRR1 (ENSEASG00005005690) #33	PM20D2 (ENSEASG00005005689) #34	ENSEASG00005031843	SRSF12 (ENSEASG00005034054) #35	PNRC1 (ENSEASG00005037854) #36	RNGTT (ENSEASG00005005683) #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000160189 #22
Common shrew	MODERN SPECIES	2394																EPHA7 (ENSSARG00000002765) #22
Hedgehog	MODERN SPECIES	3207																EPHA7 (ENSEEUG00000014352) #22
Atlantogenata	ANCESTRAL SPECIES	3	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Afrotheria	ANCESTRAL SPECIES	13	ENSGT00940000155625	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00940000156953 #37	ENSGT01060000248564.a.a
Afrotheria_a	ANCESTRAL SPECIES	13	ENSGT00940000155625	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00940000156953 #37	ENSGT01060000248564.a.a
Elephant	MODERN SPECIES	1	PNISR (ENSLAFG00000027683) #7	COQ3 (ENSLAFG00000006127) #8	FAXC (ENSLAFG00000007281) #9	FBXL4 (ENSLAFG00000005295) #10	ENSLAFG00000031052 #11	ENSLAFG00000026780	MMS22L (ENSLAFG00000005793) #12	KLHL32 (ENSLAFG00000005788) #13	NDUFAF4 (ENSLAFG00000009706) #15	GPR63 (ENSLAFG00000031026) #16	FHL5 (ENSLAFG00000018283) #17	UFL1 (ENSLAFG00000018276) #18	FUT9 (ENSLAFG00000030650) #19	ENSLAFG00000031712	MANEA (ENSLAFG00000016449) #20	EPHA7 (ENSLAFG00000018084) #22	MAP3K7 (ENSLAFG00000018639) #23	BACH2 (ENSLAFG00000013766) #24	GJA10 (ENSLAFG00000013764) #25	CASP8AP2 (ENSLAFG00000012427) #26	MDN1 (ENSLAFG00000010196) #27	LYRM2 (ENSLAFG00000010194) #28	ANKRD6 (ENSLAFG00000010187) #29	RRAGD (ENSLAFG00000005985) #30	UBE2J1 (ENSLAFG00000005983) #31	GABRR2 (ENSLAFG00000005980) #32	GABRR1 (ENSLAFG00000005975) #33	PM20D2 (ENSLAFG00000005460) #34	SRSF12 (ENSLAFG00000005458) #35	RNGTT (ENSLAFG00000008130) #37	CNR1 (ENSLAFG00000001655)
Hyrax	MODERN SPECIES	2528																EPHA7 (ENSPCAG00000008157) #22
Tenrec	MODERN SPECIES	3096																EPHA7 (ENSETEG00000006381) #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000160189 #22
Sloth	MODERN SPECIES	2800																EPHA7 (ENSCHOG00000001663) #22
Armadillo	MODERN SPECIES	833																EPHA7 (ENSDNOG00000049025) #22
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00390000008820.f	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00390000008820.f	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Diprotodontia	ANCESTRAL SPECIES	15	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00390000008820.f	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Diprotodontia_a	ANCESTRAL SPECIES	23	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00390000008820.f	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
koala	MODERN SPECIES	141														ENSPCIG00000030586	ENSPCIG00000035232	EPHA7 (ENSPCIG00000014695) #22	ENSPCIG00000000736	MAP3K7 (ENSPCIG00000023309) #23	BACH2 (ENSPCIG00000030928) #24	CASP8AP2 (ENSPCIG00000023147) #26	MDN1 (ENSPCIG00000022209) #27	ENSPCIG00000022110 #28	ANKRD6 (ENSPCIG00000021720) #29	RRAGD (ENSPCIG00000021719) #30	ENSPCIG00000034323 #31	GABRR2 (ENSPCIG00000021715) #32	GABRR1 (ENSPCIG00000021716) #33	PM20D2 (ENSPCIG00000021714) #34	SRSF12 (ENSPCIG00000021713) #35	PNRC1 (ENSPCIG00000021712) #36	RNGTT (ENSPCIG00000021711) #37
Common wonbat	MODERN SPECIES	36	ENSVURG00010007119 #8	FAXC (ENSVURG00010007107) #9	ENSVURG00010007094	FBXL4 (ENSVURG00010007082) #10	POU3F2 (ENSVURG00010007077) #11	ENSVURG00010007059	MMS22L (ENSVURG00010006988) #12	KLHL32 (ENSVURG00010006966) #13	NDUFAF4 (ENSVURG00010006941) #15	GPR63 (ENSVURG00010006938) #16	FHL5 (ENSVURG00010006924) #17	UFL1 (ENSVURG00010006905) #18	FUT9 (ENSVURG00010006896) #19	MANEA (ENSVURG00010006886) #20	ENSVURG00010006882	EPHA7 (ENSVURG00010006869) #22	ENSVURG00010006855	ENSVURG00010006843	ENSVURG00010006836	MAP3K7 (ENSVURG00010006796) #23	BACH2 (ENSVURG00010006782) #24	GJA10 (ENSVURG00010006770) #25	CASP8AP2 (ENSVURG00010006758) #26	ENSVURG00010006747	MDN1 (ENSVURG00010006662) #27	ENSVURG00010006636 #28	ANKRD6 (ENSVURG00010006553) #29	RRAGD (ENSVURG00010006511) #30	UBE2J1 (ENSVURG00010006505) #31	GABRR2 (ENSVURG00010006452) #32	GABRR1 (ENSVURG00010006432) #33
Wallaby	MODERN SPECIES	4110																ENSMEUG00000015209 #22
Tasmanian devil	MODERN SPECIES	3	USP45 (ENSSHAG00000012542)	PNISR (ENSSHAG00000012240) #7	COQ3 (ENSSHAG00000011955) #8	FAXC (ENSSHAG00000029301) #9	FBXL4 (ENSSHAG00000006900) #10	POU3F2 (ENSSHAG00000025884) #11	MMS22L (ENSSHAG00000017024) #12	KLHL32 (ENSSHAG00000016625) #13	NDUFAF4 (ENSSHAG00000030054) #15	FHL5 (ENSSHAG00000015265) #17	UFL1 (ENSSHAG00000015118) #18	FUT9 (ENSSHAG00000014009) #19	ENSSHAG00000028790	MANEA (ENSSHAG00000010074) #20	ENSSHAG00000022985	EPHA7 (ENSSHAG00000016194) #22	MAP3K7 (ENSSHAG00000017677) #23	BACH2 (ENSSHAG00000016295) #24	ENSSHAG00000016250 #25	CASP8AP2 (ENSSHAG00000016180) #26	MDN1 (ENSSHAG00000015498) #27	ENSSHAG00000024861 #28	ANKRD6 (ENSSHAG00000015016) #29	RRAGD (ENSSHAG00000014220) #30	UBE2J1 (ENSSHAG00000013779) #31	GABRR2 (ENSSHAG00000024384) #32	GABRR1 (ENSSHAG00000012914) #33	PM20D2 (ENSSHAG00000031294) #34	SRSF12 (ENSSHAG00000025141) #35	RNGTT (ENSSHAG00000010187) #37	CNR1 (ENSSHAG00000029099)
Opossum	MODERN SPECIES	1	FBXL4 (ENSMODG00000018121) #10	POU3F2 (ENSMODG00000018122) #11	ENSMODG00000039437	ENSMODG00000018124	MMS22L (ENSMODG00000018127) #12	KLHL32 (ENSMODG00000018129) #13	ENSMODG00000038074 #15	GPR63 (ENSMODG00000018132) #16	ENSMODG00000018134 #17	UFL1 (ENSMODG00000018137) #18	FUT9 (ENSMODG00000023384) #19	ENSMODG00000023385	MANEA (ENSMODG00000018142) #20	ENSMODG00000037917	ENSMODG00000046593	EPHA7 (ENSMODG00000018150) #22	ENSMODG00000044142	ENSMODG00000018165	ENSMODG00000023387	MAP3K7 (ENSMODG00000018170) #23	BACH2 (ENSMODG00000018176) #24	GJA10 (ENSMODG00000018178) #25	CASP8AP2 (ENSMODG00000018180) #26	ENSMODG00000036973	MDN1 (ENSMODG00000018213) #27	LYRM2 (ENSMODG00000018270) #28	ANKRD6 (ENSMODG00000018273) #29	RRAGD (ENSMODG00000018275) #30	ENSMODG00000018277 #31	GABRR2 (ENSMODG00000018278) #32	ENSMODG00000049570
Platypus	MODERN SPECIES	10	BVES (ENSOANG00000047336)	ENSOANG00000047568	HACE1 (ENSOANG00000010300)	GRIK2 (ENSOANG00000010302)	ASCC3 (ENSOANG00000008944)	SIM1 (ENSOANG00000008943)	MCHR2 (ENSOANG00000008942)	CCNC (ENSOANG00000008940)	ENSOANG00000008939	USP45 (ENSOANG00000008938)	PNISR (ENSOANG00000008936) #7	COQ3 (ENSOANG00000042398) #8	FAXC (ENSOANG00000037382) #9	FUT9 (ENSOANG00000008933) #19	ENSOANG00000008932 #20	EPHA7 (ENSOANG00000008930) #22	ENSOANG00000022562 #23	BACH2 (ENSOANG00000047982) #24	ENSOANG00000048669 #26	MDN1 (ENSOANG00000012876) #27	ENSOANG00000012880	ANKRD6 (ENSOANG00000012881) #29	UBE2J1 (ENSOANG00000000527) #31	GABRR2 (ENSOANG00000000528) #32	ENSOANG00000046869 #33	ENSOANG00000050635 #34	ENSOANG00000041058 #33	ENSOANG00000036763 #34	ENSOANG00000037901 #36	RNGTT (ENSOANG00000000533) #37	ENSOANG00000000535
Sauria	ANCESTRAL SPECIES	1	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT01030000234817
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453	ENSGT01030000234817
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	1876																ENSPSIG00000008391 #22	ENSPSIG00000001427	ENSPSIG00000009228	BACH2 (ENSPSIG00000009237) #24	GJA10 (ENSPSIG00000009242) #25	ENSPSIG00000009257 #26	MDN1 (ENSPSIG00000009264) #27	ENSPSIG00000009909	ANKRD6 (ENSPSIG00000009920) #29	RRAGD (ENSPSIG00000009985) #30	UBE2J1 (ENSPSIG00000010093) #31	GABRR2 (ENSPSIG00000010102) #32	GABRR1 (ENSPSIG00000010456) #33	PM20D2 (ENSPSIG00000010966) #34	RNGTT (ENSPSIG00000010976) #37	CNR1 (ENSPSIG00000001432)
Chinese turtle	MODERN SPECIES	717	FBXL4 (ENSPSIG00000002517) #10	ENSPSIG00000001431	ENSPSIG00000002514	MMS22L (ENSPSIG00000002486) #12	ENSPSIG00000002482	KLHL32 (ENSPSIG00000002471) #13	NDUFAF4 (ENSPSIG00000001424) #15	GPR63 (ENSPSIG00000001421) #16	ENSPSIG00000002468	FHL5 (ENSPSIG00000002455) #17	UFL1 (ENSPSIG00000002403) #18	FUT9 (ENSPSIG00000001412) #19	ENSPSIG00000001406	MANEA (ENSPSIG00000002385) #20	ENSPSIG00000001402	EPHA7 (ENSPSIG00000002375) #22
Testudinoidea	ANCESTRAL SPECIES	12	ENSGT00940000157719.l	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00960000189421	ENSGT00490000043453.d
Testudinidae	ANCESTRAL SPECIES	10	ENSGT00940000157719.l	ENSGT00940000157719.k	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00960000189421	ENSGT00490000043453.d
Abingdon island giant tortoise	MODERN SPECIES	2531																EPHA7 (ENSCABG00000011115) #22	ENSCABG00000011116
Goode s thornscrub tortoise	MODERN SPECIES	17	PNISR (ENSGEVG00005003075) #7	COQ3 (ENSGEVG00005003062) #8	FAXC (ENSGEVG00005003024) #9	FBXL4 (ENSGEVG00005003000) #10	POU3F2 (ENSGEVG00005002991) #11	ENSGEVG00005002975	MMS22L (ENSGEVG00005002915) #12	ENSGEVG00005002891 #13	ENSGEVG00005002872 #13	NDUFAF4 (ENSGEVG00005002864) #15	GPR63 (ENSGEVG00005002856) #16	FHL5 (ENSGEVG00005002827) #17	UFL1 (ENSGEVG00005002787) #18	FUT9 (ENSGEVG00005002773) #19	MANEA (ENSGEVG00005002760) #20	EPHA7 (ENSGEVG00005002728) #22	ENSGEVG00005002706	MAP3K7 (ENSGEVG00005002604) #23	ENSGEVG00005002548	ENSGEVG00005002541	BACH2 (ENSGEVG00005002533) #24	GJA10 (ENSGEVG00005002522) #25	CASP8AP2 (ENSGEVG00005002506) #26	LYRM2 (ENSGEVG00005002329) #28	ENSGEVG00005002313 #29	ENSGEVG00005002291 #29	RRAGD (ENSGEVG00005002270) #30	UBE2J1 (ENSGEVG00005002256) #31	GABRR2 (ENSGEVG00005002243) #32	GABRR1 (ENSGEVG00005002223) #33	PM20D2 (ENSGEVG00005002201) #34
Emydidae	ANCESTRAL SPECIES	8	ENSGT00940000163155	ENSGT00940000157719.l	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00960000189421	ENSGT00490000043453.d
Three-toed box turtle	MODERN SPECIES	15	ENSTMTG00000002198	USP45 (ENSTMTG00000002207)	PNISR (ENSTMTG00000002242) #7	COQ3 (ENSTMTG00000002247) #8	FAXC (ENSTMTG00000002256) #9	FBXL4 (ENSTMTG00000002265) #10	POU3F2 (ENSTMTG00000002271) #11	MMS22L (ENSTMTG00000002281) #12	KLHL32 (ENSTMTG00000002330) #13	NDUFAF4 (ENSTMTG00000002345) #15	GPR63 (ENSTMTG00000002354) #16	FHL5 (ENSTMTG00000002355) #17	UFL1 (ENSTMTG00000002364) #18	FUT9 (ENSTMTG00000002375) #19	MANEA (ENSTMTG00000002379) #20	EPHA7 (ENSTMTG00000002387) #22	ENSTMTG00000002427	MAP3K7 (ENSTMTG00000002445) #23	ENSTMTG00000002527	BACH2 (ENSTMTG00000002531) #24	GJA10 (ENSTMTG00000002539) #25	CASP8AP2 (ENSTMTG00000002546) #26	MDN1 (ENSTMTG00000002714) #27	LYRM2 (ENSTMTG00000005085) #28	ANKRD6 (ENSTMTG00000005103) #29	ENSTMTG00000005129	RRAGD (ENSTMTG00000005145) #30	UBE2J1 (ENSTMTG00000005165) #31	GABRR2 (ENSTMTG00000005183) #32	GABRR1 (ENSTMTG00000005218) #33	PM20D2 (ENSTMTG00000005245) #34
painted turtle	MODERN SPECIES	2422	USP45 (ENSCPBG00000003656)	PNISR (ENSCPBG00000003613) #7	COQ3 (ENSCPBG00000003600) #8	FAXC (ENSCPBG00000003584) #9	FBXL4 (ENSCPBG00000003550) #10	POU3F2 (ENSCPBG00000003544) #11	MMS22L (ENSCPBG00000003510) #12	KLHL32 (ENSCPBG00000003479) #13	NDUFAF4 (ENSCPBG00000003460) #15	GPR63 (ENSCPBG00000003454) #16	FHL5 (ENSCPBG00000003113) #17	UFL1 (ENSCPBG00000003072) #18	FUT9 (ENSCPBG00000003059) #19	MANEA (ENSCPBG00000003029) #20	ENSCPBG00000003009	EPHA7 (ENSCPBG00000002925) #22
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453
Australian saltwater crocodile	MODERN SPECIES	38	PNISR (ENSCPRG00005000239) #7	COQ3 (ENSCPRG00005000207) #8	ENSCPRG00005000201 #9	ENSCPRG00005000191 #9	FBXL4 (ENSCPRG00005017365) #10	POU3F2 (ENSCPRG00005017364) #11	MMS22L (ENSCPRG00005017353) #12	ENSCPRG00005017350 #13	ENSCPRG00005017348 #13	NDUFAF4 (ENSCPRG00005017345) #15	GPR63 (ENSCPRG00005017342) #16	FHL5 (ENSCPRG00005017338) #17	UFL1 (ENSCPRG00005017328) #18	FUT9 (ENSCPRG00005017327) #19	MANEA (ENSCPRG00005017320) #20	EPHA7 (ENSCPRG00005017313) #22	MAP3K7 (ENSCPRG00005017287) #23	BACH2 (ENSCPRG00005017267) #24	GJA10 (ENSCPRG00005017265) #25	CASP8AP2 (ENSCPRG00005017263) #26	MDN1 (ENSCPRG00005017073) #27	LYRM2 (ENSCPRG00005017000) #28	ANKRD6 (ENSCPRG00005016955) #29	RRAGD (ENSCPRG00005016931) #30	UBE2J1 (ENSCPRG00005016927) #31	GABRR2 (ENSCPRG00005016922) #32	GABRR1 (ENSCPRG00005016907) #33	PM20D2 (ENSCPRG00005016902) #34	ENSCPRG00005016900	PNRC1 (ENSCPRG00005016899) #36	ENSCPRG00005016898
Aves	ANCESTRAL SPECIES	10	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453
African ostrich	MODERN SPECIES	614																EPHA7 (ENSSCUG00000009892) #22	MAP3K7 (ENSSCUG00000009855) #23	BACH2 (ENSSCUG00000009825) #24
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000157719	ENSGT01060000248664	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000157719	ENSGT01060000248664	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453
Great tit	MODERN SPECIES	22	ENSPMJG00000000782	USP45 (ENSPMJG00000000786)	ENSPMJG00000000801	COQ3 (ENSPMJG00000000809) #8	FAXC (ENSPMJG00000000817) #9	FBXL4 (ENSPMJG00000000892) #10	ENSPMJG00000000900	MMS22L (ENSPMJG00000001015) #12	KLHL32 (ENSPMJG00000001160) #13	NDUFAF4 (ENSPMJG00000001185) #15	GPR63 (ENSPMJG00000001193) #16	FHL5 (ENSPMJG00000001195) #17	UFL1 (ENSPMJG00000001196) #18	FUT9 (ENSPMJG00000001233) #19	MANEA (ENSPMJG00000001269) #20	EPHA7 (ENSPMJG00000001305) #22	MAP3K7 (ENSPMJG00000001473) #23	BACH2 (ENSPMJG00000001556) #24	GJA10 (ENSPMJG00000001569) #25	CASP8AP2 (ENSPMJG00000001574) #26	MDN1 (ENSPMJG00000001617) #27	LYRM2 (ENSPMJG00000002106) #28	ANKRD6 (ENSPMJG00000002121) #29	RRAGD (ENSPMJG00000002181) #30	UBE2J1 (ENSPMJG00000002194) #31	GABRR2 (ENSPMJG00000002200) #32	GABRR1 (ENSPMJG00000002240) #33	PM20D2 (ENSPMJG00000002254) #34	PNRC1 (ENSPMJG00000002268) #36	ENSPMJG00000002275	ENSPMJG00000002291
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000157719	ENSGT01060000248664	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887.g #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864.b #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453
Flycatcher	MODERN SPECIES	21	USP45 (ENSFALG00000009614)	ENSFALG00000026665	COQ3 (ENSFALG00000024544) #8	ENSFALG00000022998	FAXC (ENSFALG00000009629) #9	FBXL4 (ENSFALG00000009636) #10	POU3F2 (ENSFALG00000026361) #11	MMS22L (ENSFALG00000009642) #12	KLHL32 (ENSFALG00000009649) #13	NDUFAF4 (ENSFALG00000027031) #15	GPR63 (ENSFALG00000014703) #16	FHL5 (ENSFALG00000026017) #17	UFL1 (ENSFALG00000009660) #18	FUT9 (ENSFALG00000009665) #19	MANEA (ENSFALG00000027505) #20	EPHA7 (ENSFALG00000003212) #22	MAP3K7 (ENSFALG00000003169) #23	BACH2 (ENSFALG00000003160) #24	GJA10 (ENSFALG00000003151) #25	CASP8AP2 (ENSFALG00000003130) #26	MDN1 (ENSFALG00000003068) #27	LYRM2 (ENSFALG00000026619) #28	ENSFALG00000025417 #29	ENSFALG00000003022 #29	RRAGD (ENSFALG00000003012) #30	UBE2J1 (ENSFALG00000003006) #31	ENSFALG00000002983 #32	ENSFALG00000023887 #32	PM20D2 (ENSFALG00000002975) #34	ENSFALG00000014792	PNRC1 (ENSFALG00000002968) #36
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000157719	ENSGT01060000248664	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887.g #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864.b #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453
Medium ground finch	MODERN SPECIES	35																EPHA7 (ENSGFOG00000006593) #22	MAP3K7 (ENSGFOG00000006521) #23	BACH2 (ENSGFOG00000006508) #24	GJA10 (ENSGFOG00000006502) #25	ENSGFOG00000006495	CASP8AP2 (ENSGFOG00000006486) #26	MDN1 (ENSGFOG00000005362) #27	LYRM2 (ENSGFOG00000005252) #28	ANKRD6 (ENSGFOG00000005210) #29	RRAGD (ENSGFOG00000005200) #30	UBE2J1 (ENSGFOG00000005192) #31	GABRR2 (ENSGFOG00000005179) #32	PRIM2 (ENSGFOG00000005170)	KHDRBS2 (ENSGFOG00000005164)	ENSGFOG00000005150	LGSN (ENSGFOG00000005141)
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000157719	ENSGT01060000248664	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00970000193844	ENSGT00940000155887.g #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864.b #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453	ENSGT00940000156953 #37
Common canary	MODERN SPECIES	1	ENSSCAG00000001191	USP45 (ENSSCAG00000001208)	ENSSCAG00000001235	COQ3 (ENSSCAG00000001250) #8	FAXC (ENSSCAG00000001258) #9	FBXL4 (ENSSCAG00000001276) #10	MMS22L (ENSSCAG00000001309) #12	ENSSCAG00000001341 #13	ENSSCAG00000001354 #13	NDUFAF4 (ENSSCAG00000001361) #15	GPR63 (ENSSCAG00000001379) #16	FHL5 (ENSSCAG00000001389) #17	UFL1 (ENSSCAG00000001485) #18	FUT9 (ENSSCAG00000001754) #19	MANEA (ENSSCAG00000001761) #20	EPHA7 (ENSSCAG00000001775) #22	MAP3K7 (ENSSCAG00000001787) #23	BACH2 (ENSSCAG00000001813) #24	GJA10 (ENSSCAG00000001818) #25	CASP8AP2 (ENSSCAG00000001824) #26	MDN1 (ENSSCAG00000002014) #27	ENSSCAG00000002798	ANKRD6 (ENSSCAG00000002817) #29	RRAGD (ENSSCAG00000002891) #30	UBE2J1 (ENSSCAG00000002895) #31	GABRR2 (ENSSCAG00000002906) #32	GABRR1 (ENSSCAG00000002912) #33	PM20D2 (ENSSCAG00000002927) #34	ENSSCAG00000002933	ENSSCAG00000002943	RNGTT (ENSSCAG00000002955) #37
Zebra finch	MODERN SPECIES	23	ENSTGUG00000012283	USP45 (ENSTGUG00000012285)	ENSTGUG00000012289	COQ3 (ENSTGUG00000012290) #8	FAXC (ENSTGUG00000012293) #9	FBXL4 (ENSTGUG00000012295) #10	POU3F2 (ENSTGUG00000027623) #11	MMS22L (ENSTGUG00000012296) #12	KLHL32 (ENSTGUG00000012306) #13	NDUFAF4 (ENSTGUG00000024097) #15	GPR63 (ENSTGUG00000026583) #16	FHL5 (ENSTGUG00000012315) #17	UFL1 (ENSTGUG00000012318) #18	FUT9 (ENSTGUG00000019610) #19	MANEA (ENSTGUG00000020334) #20	EPHA7 (ENSTGUG00000012333) #22	MAP3K7 (ENSTGUG00000012360) #23	BACH2 (ENSTGUG00000012380) #24	GJA10 (ENSTGUG00000012383) #25	CASP8AP2 (ENSTGUG00000012385) #26	MDN1 (ENSTGUG00000012389) #27	ANKRD6 (ENSTGUG00000012407) #29	RRAGD (ENSTGUG00000012410) #30	UBE2J1 (ENSTGUG00000012412) #31	GABRR2 (ENSTGUG00000012416) #32	GABRR1 (ENSTGUG00000012419) #33	PM20D2 (ENSTGUG00000012421) #34	PNRC1 (ENSTGUG00000012423) #36	BORCS6 (ENSTGUG00000019650)	RNGTT (ENSTGUG00000012427) #37	CNR1 (ENSTGUG00000020322)
Neognathae_c	ANCESTRAL SPECIES	10	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453	ENSGT00940000156953 #37
Golden eagle	MODERN SPECIES	11	USP45 (ENSACCG00020007646)	ENSACCG00020007669	COQ3 (ENSACCG00020007685) #8	FAXC (ENSACCG00020007694) #9	FBXL4 (ENSACCG00020007705) #10	POU3F2 (ENSACCG00020007717) #11	MMS22L (ENSACCG00020007801) #12	KLHL32 (ENSACCG00020007874) #13	NDUFAF4 (ENSACCG00020007902) #15	GPR63 (ENSACCG00020007915) #16	FHL5 (ENSACCG00020007940) #17	UFL1 (ENSACCG00020007959) #18	FUT9 (ENSACCG00020007973) #19	MANEA (ENSACCG00020007982) #20	ENSACCG00020007990	EPHA7 (ENSACCG00020008018) #22	MAP3K7 (ENSACCG00020000300) #23	BACH2 (ENSACCG00020000345) #24	GJA10 (ENSACCG00020000365) #25	CASP8AP2 (ENSACCG00020000438) #26	MDN1 (ENSACCG00020001607) #27	LYRM2 (ENSACCG00020002598) #28	ANKRD6 (ENSACCG00020002608) #29	RRAGD (ENSACCG00020002626) #30	UBE2J1 (ENSACCG00020002652) #31	GABRR2 (ENSACCG00020002672) #32	GABRR1 (ENSACCG00020002696) #33	PM20D2 (ENSACCG00020002718) #34	PNRC1 (ENSACCG00020002738) #36	BORCS6 (ENSACCG00020002750)	RNGTT (ENSACCG00020002764) #37
Kakapo	MODERN SPECIES	23	PNISR (ENSSHBG00005008511) #7	COQ3 (ENSSHBG00005008518) #8	ENSSHBG00005008530	FAXC (ENSSHBG00005008534) #9	FBXL4 (ENSSHBG00005008538) #10	POU3F2 (ENSSHBG00005008541) #11	MMS22L (ENSSHBG00005008564) #12	ENSSHBG00005008571 #13	ENSSHBG00005008581 #13	NDUFAF4 (ENSSHBG00005008586) #15	GPR63 (ENSSHBG00005008589) #16	FHL5 (ENSSHBG00005008592) #17	UFL1 (ENSSHBG00005008601) #18	FUT9 (ENSSHBG00005008631) #19	MANEA (ENSSHBG00005008638) #20	EPHA7 (ENSSHBG00005008653) #22	MAP3K7 (ENSSHBG00005008684) #23	BACH2 (ENSSHBG00005008691) #24	GJA10 (ENSSHBG00005008703) #25	CASP8AP2 (ENSSHBG00005008714) #26	MDN1 (ENSSHBG00005009505) #27	ENSSHBG00005016401	ANKRD6 (ENSSHBG00005016411) #29	RRAGD (ENSSHBG00005016416) #30	UBE2J1 (ENSSHBG00005000504) #31	GABRR2 (ENSSHBG00005001725) #32	GABRR1 (ENSSHBG00005001766) #33	PM20D2 (ENSSHBG00005001826) #34	PNRC1 (ENSSHBG00005001857) #36	BORCS6 (ENSSHBG00005001877)	RNGTT (ENSSHBG00005001931) #37
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453	ENSGT00960000189421
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT01040000244587	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT01040000244587	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00940000165360	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453
Chicken	MODERN SPECIES	22	PNISR (ENSGALG00010004306) #7	COQ3 (ENSGALG00010004329) #8	FAXC (ENSGALG00010004345) #9	FBXL4 (ENSGALG00010004362) #10	POU3F2 (ENSGALG00010004399) #11	MMS22L (ENSGALG00010004373) #12	ENSGALG00010004383 #13	ENSGALG00010004978 #13	NDUFAF4 (ENSGALG00010004123) #15	GPR63 (ENSGALG00010002586) #16	FHL5 (ENSGALG00010002625) #17	UFL1 (ENSGALG00010002649) #18	FUT9 (ENSGALG00010002747) #19	MANEA (ENSGALG00010004125) #20	ENSGALG00010002877	EPHA7 (ENSGALG00010004127) #22	MAP3K7 (ENSGALG00010003218) #23	ENSGALG00010003224	BACH2 (ENSGALG00010003274) #24	GJA10 (ENSGALG00010004392) #25	CASP8AP2 (ENSGALG00010003300) #26	MDN1 (ENSGALG00010003308) #27	LYRM2 (ENSGALG00010003317)	ANKRD6 (ENSGALG00010003364) #29	RRAGD (ENSGALG00010004921) #30	UBE2J1 (ENSGALG00010003383) #31	GABRR2 (ENSGALG00010003405) #32	GABRR1 (ENSGALG00010004942) #33	ENSGALG00010003422	ENSGALG00010003419	PM20D2 (ENSGALG00010003431) #34
Turkey	MODERN SPECIES	11	ENSMGAG00000013562 #9	ENSMGAG00000013560 #8	ENSMGAG00000013558 #7	ENSMGAG00000013556	ENSMGAG00000017048	ENSMGAG00000016616	ENSMGAG00000013555	ENSMGAG00000016967	ENSMGAG00000013553	ENSMGAG00000013545	FHL5 (ENSMGAG00000022593) #17	UFL1 (ENSMGAG00000013599) #18	ENSMGAG00000019408	FUT9 (ENSMGAG00000015906) #19	MANEA (ENSMGAG00000013605) #20	EPHA7 (ENSMGAG00000013613) #22	MAP3K7 (ENSMGAG00000013620) #23	ENSMGAG00000022510	BACH2 (ENSMGAG00000013626) #24	GJA10 (ENSMGAG00000013630) #25	CASP8AP2 (ENSMGAG00000013631) #26	MDN1 (ENSMGAG00000013633) #27	ENSMGAG00000020702	ANKRD6 (ENSMGAG00000013644) #29	RRAGD (ENSMGAG00000013656) #30	GABRR2 (ENSMGAG00000013651) #32	GABRR1 (ENSMGAG00000013658) #33	PM20D2 (ENSMGAG00000013660) #34	PNRC1 (ENSMGAG00000013662) #36	RNGTT (ENSMGAG00000013663) #37	ENSMGAG00000019983
Japanese quail	MODERN SPECIES	21	USP45 (ENSCJPG00005000057)	PNISR (ENSCJPG00005000077) #7	COQ3 (ENSCJPG00005000085) #8	FAXC (ENSCJPG00005000089) #9	FBXL4 (ENSCJPG00005000132) #10	POU3F2 (ENSCJPG00005000151) #11	ENSCJPG00005000175	MMS22L (ENSCJPG00005000231) #12	KLHL32 (ENSCJPG00005000260) #13	NDUFAF4 (ENSCJPG00005000283) #15	GPR63 (ENSCJPG00005000287) #16	FHL5 (ENSCJPG00005000296) #17	UFL1 (ENSCJPG00005000355) #18	FUT9 (ENSCJPG00005002246) #19	MANEA (ENSCJPG00005002249) #20	EPHA7 (ENSCJPG00005002255) #22	MAP3K7 (ENSCJPG00005002267) #23	ENSCJPG00005002271	BACH2 (ENSCJPG00005002273) #24	GJA10 (ENSCJPG00005002275) #25	CASP8AP2 (ENSCJPG00005002276) #26	MDN1 (ENSCJPG00005002315) #27	LYRM2 (ENSCJPG00005003944) #28	ANKRD6 (ENSCJPG00005003945) #29	RRAGD (ENSCJPG00005004039) #30	UBE2J1 (ENSCJPG00005004045) #31	GABRR2 (ENSCJPG00005004055) #32	GABRR1 (ENSCJPG00005004072) #33	PM20D2 (ENSCJPG00005004077) #34	PNRC1 (ENSCJPG00005004080) #36	BORCS6 (ENSCJPG00005004081)
Anatidae	ANCESTRAL SPECIES		ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00490000043453	ENSGT00940000156953 #37
Duck	MODERN SPECIES	21	ENSAPLG00000025611	CYRIA (ENSAPLG00000009498)	MYCN (ENSAPLG00000009825)	DDX1 (ENSAPLG00000011093)	NBAS (ENSAPLG00000012361)	LRATD1 (ENSAPLG00000011566)	TRIB2 (ENSAPLG00000013170)	MMS22L (ENSAPLG00000006108) #12	KLHL32 (ENSAPLG00000005979) #13	NDUFAF4 (ENSAPLG00000005892) #15	GPR63 (ENSAPLG00000001077) #16	FHL5 (ENSAPLG00000005672) #17	UFL1 (ENSAPLG00000005301) #18	FUT9 (ENSAPLG00000001045) #19	MANEA (ENSAPLG00000005108) #20	EPHA7 (ENSAPLG00000002816) #22	MAP3K7 (ENSAPLG00000002702) #23	BACH2 (ENSAPLG00000002486) #24	GJA10 (ENSAPLG00000002205) #25	CASP8AP2 (ENSAPLG00000002243) #26	MDN1 (ENSAPLG00000000987) #27	LYRM2 (ENSAPLG00000025978) #28	ENSAPLG00000029489 #29	ENSAPLG00000016201 #29	RRAGD (ENSAPLG00000016037) #30	UBE2J1 (ENSAPLG00000015959) #31	GABRR2 (ENSAPLG00000015752) #32	GABRR1 (ENSAPLG00000015723) #33	PM20D2 (ENSAPLG00000015721) #34	PNRC1 (ENSAPLG00000002201) #36	BORCS6 (ENSAPLG00000029165)
Pink-footed goose	DUPLICATION
Pink-footed goose	MODERN SPECIES	17	ENSABRG00000002692 #9	ENSABRG00000002719 #9	FBXL4 (ENSABRG00000002735) #10	POU3F2 (ENSABRG00000002751) #11	MMS22L (ENSABRG00000002851) #12	KLHL32 (ENSABRG00000002946) #13	NDUFAF4 (ENSABRG00000003010) #15	GPR63 (ENSABRG00000003031) #16	FHL5 (ENSABRG00000003040) #17	UFL1 (ENSABRG00000003072) #18	FUT9 (ENSABRG00000003111) #19	MANEA (ENSABRG00000003144) #20	ENSABRG00000003159	ENSABRG00000003181 #22	ENSABRG00000003215 #22	ENSABRG00000003224 #22	MAP3K7 (ENSABRG00000003303) #23	BACH2 (ENSABRG00000003351) #24	GJA10 (ENSABRG00000003364) #25	CASP8AP2 (ENSABRG00000003379) #26	MDN1 (ENSABRG00000003773) #27	LYRM2 (ENSABRG00000007074) #28	ANKRD6 (ENSABRG00000007089) #29	RRAGD (ENSABRG00000007259) #30	UBE2J1 (ENSABRG00000007264) #31	GABRR1 (ENSABRG00000007268) #33	PM20D2 (ENSABRG00000007293) #34	PNRC1 (ENSABRG00000007300) #36	BORCS6 (ENSABRG00000007308)	RNGTT (ENSABRG00000007327) #37	CNR1 (ENSABRG00000007566)
Pink-footed goose	DUPLICATION
Pink-footed goose	MODERN SPECIES	17	PNISR (ENSABRG00000002392) #7	COQ3 (ENSABRG00000002674) #8	ENSABRG00000002692 #9	ENSABRG00000002719 #9	FBXL4 (ENSABRG00000002735) #10	POU3F2 (ENSABRG00000002751) #11	MMS22L (ENSABRG00000002851) #12	KLHL32 (ENSABRG00000002946) #13	NDUFAF4 (ENSABRG00000003010) #15	GPR63 (ENSABRG00000003031) #16	FHL5 (ENSABRG00000003040) #17	UFL1 (ENSABRG00000003072) #18	FUT9 (ENSABRG00000003111) #19	MANEA (ENSABRG00000003144) #20	ENSABRG00000003159	ENSABRG00000003181 #22	ENSABRG00000003215 #22	ENSABRG00000003224 #22	MAP3K7 (ENSABRG00000003303) #23	BACH2 (ENSABRG00000003351) #24	GJA10 (ENSABRG00000003364) #25	CASP8AP2 (ENSABRG00000003379) #26	MDN1 (ENSABRG00000003773) #27	LYRM2 (ENSABRG00000007074) #28	ANKRD6 (ENSABRG00000007089) #29	RRAGD (ENSABRG00000007259) #30	UBE2J1 (ENSABRG00000007264) #31	GABRR1 (ENSABRG00000007268) #33	PM20D2 (ENSABRG00000007293) #34	PNRC1 (ENSABRG00000007300) #36	BORCS6 (ENSABRG00000007308)
Pink-footed goose	MODERN SPECIES	17	COQ3 (ENSABRG00000002674) #8	ENSABRG00000002692 #9	ENSABRG00000002719 #9	FBXL4 (ENSABRG00000002735) #10	POU3F2 (ENSABRG00000002751) #11	MMS22L (ENSABRG00000002851) #12	KLHL32 (ENSABRG00000002946) #13	NDUFAF4 (ENSABRG00000003010) #15	GPR63 (ENSABRG00000003031) #16	FHL5 (ENSABRG00000003040) #17	UFL1 (ENSABRG00000003072) #18	FUT9 (ENSABRG00000003111) #19	MANEA (ENSABRG00000003144) #20	ENSABRG00000003159	ENSABRG00000003181 #22	ENSABRG00000003215 #22	ENSABRG00000003224 #22	MAP3K7 (ENSABRG00000003303) #23	BACH2 (ENSABRG00000003351) #24	GJA10 (ENSABRG00000003364) #25	CASP8AP2 (ENSABRG00000003379) #26	MDN1 (ENSABRG00000003773) #27	LYRM2 (ENSABRG00000007074) #28	ANKRD6 (ENSABRG00000007089) #29	RRAGD (ENSABRG00000007259) #30	UBE2J1 (ENSABRG00000007264) #31	GABRR1 (ENSABRG00000007268) #33	PM20D2 (ENSABRG00000007293) #34	PNRC1 (ENSABRG00000007300) #36	BORCS6 (ENSABRG00000007308)	RNGTT (ENSABRG00000007327) #37
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00940000157179.i.b #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT01030000234817
tuatara	DUPLICATION
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1131																ENSSPUG00000012855 #22	ENSSPUG00000012866 #22	ENSSPUG00000012873 #22
tuatara	MODERN SPECIES	1131															ENSSPUG00000012855 #22	ENSSPUG00000012866 #22	ENSSPUG00000012873 #22
tuatara	MODERN SPECIES	1131														ENSSPUG00000012855 #22	ENSSPUG00000012866 #22	ENSSPUG00000012873 #22
Episquamata	ANCESTRAL SPECIES		ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT01030000234817
Laterata	ANCESTRAL SPECIES	4	ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Argentine black and white tegu	MODERN SPECIES	2	PNISR (ENSSMRG00000013354) #7	COQ3 (ENSSMRG00000013355) #8	FAXC (ENSSMRG00000013356) #9	FBXL4 (ENSSMRG00000013357) #10	POU3F2 (ENSSMRG00000013358) #11	MMS22L (ENSSMRG00000013360) #12	KLHL32 (ENSSMRG00000013361) #13	NDUFAF4 (ENSSMRG00000013362) #15	GPR63 (ENSSMRG00000013363) #16	FHL5 (ENSSMRG00000013364) #17	UFL1 (ENSSMRG00000013365) #18	ENSSMRG00000013366	FUT9 (ENSSMRG00000013367) #19	MANEA (ENSSMRG00000013371) #20	ENSSMRG00000013372	EPHA7 (ENSSMRG00000013374) #22	IGFBPL1 (ENSSMRG00000013378)	TOMM5 (ENSSMRG00000013380)	FRMPD1 (ENSSMRG00000013381)	TRMT10B (ENSSMRG00000013382)	ENSSMRG00000013383	DCAF10 (ENSSMRG00000013384)	ENSSMRG00000013385	FBXO10 (ENSSMRG00000013387)	POLR1E (ENSSMRG00000013391)	ZBTB5 (ENSSMRG00000013393)	GRHPR (ENSSMRG00000013395)	ZCCHC7 (ENSSMRG00000013401)	PAX5 (ENSSMRG00000013403)
Common wall lizard	MODERN SPECIES	11	COQ3 (ENSPMRG00000007589) #8	FAXC (ENSPMRG00000007581) #9	FBXL4 (ENSPMRG00000007564) #10	POU3F2 (ENSPMRG00000007554) #11	ENSPMRG00000007551	MMS22L (ENSPMRG00000007506) #12	KLHL32 (ENSPMRG00000007472) #13	NDUFAF4 (ENSPMRG00000007459) #15	FHL5 (ENSPMRG00000007449) #17	UFL1 (ENSPMRG00000007427) #18	ENSPMRG00000007411 #19	ENSPMRG00000007400 #19	MANEA (ENSPMRG00000007391) #20	ENSPMRG00000007387	ENSPMRG00000007378	EPHA7 (ENSPMRG00000007345) #22	ENSPMRG00000007331	ENSPMRG00000007316	MAP3K7 (ENSPMRG00000007292) #23	BACH2 (ENSPMRG00000007281) #24	GJA10 (ENSPMRG00000007276) #25	CASP8AP2 (ENSPMRG00000007259) #26	MDN1 (ENSPMRG00000005041) #27	LYRM2 (ENSPMRG00000004827) #28	ANKRD6 (ENSPMRG00000004716) #29	RRAGD (ENSPMRG00000004689) #30	UBE2J1 (ENSPMRG00000004682) #31	GABRR2 (ENSPMRG00000004673) #32	GABRR1 (ENSPMRG00000004661) #33	PM20D2 (ENSPMRG00000004651) #34	ENSPMRG00000004649 #35
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT01100000263543.b.m.a.a.b	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Lizard	MODERN SPECIES		TPD52L1 (ENSACAG00000001702)	HDDC2 (ENSACAG00000001787)	HEY2 (ENSACAG00000001813)	ENSACAG00000036959	NCOA7 (ENSACAG00000001865)	ENSACAG00000039249	HINT3 (ENSACAG00000035755)	TRMT11 (ENSACAG00000002072)	ENSACAG00000042446	ENSACAG00000039361	ENSACAG00000002330 #20	ENSACAG00000044713	ENSACAG00000035368	ENSACAG00000041978	ENSACAG00000044068	ENSACAG00000003318 #22	ENSACAG00000035645	ENSACAG00000039522	ENSACAG00000043245	ENSACAG00000042749	ENSACAG00000039050	ENSACAG00000037535	ENSACAG00000015456	SNX14 (ENSACAG00000015278)	SYNCRIP (ENSACAG00000015234)	HTR1E (ENSACAG00000015232)	CGA (ENSACAG00000036613)	ZNF292 (ENSACAG00000015199)	SMIM8 (ENSACAG00000015197)	C6orf163 (ENSACAG00000015180)	CFAP206 (ENSACAG00000015127)
Elapidae	DUPLICATION
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000160189.i.a #22
Elapidae_a	ANCESTRAL SPECIES	6	ENSGT00940000164601	ENSGT00940000157719.m	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095.a #19	ENSGT00390000016054.a #20	ENSGT00940000160189.i.b #22	ENSGT00940000160189.i.a #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Acanthophiinae	ANCESTRAL SPECIES	8	ENSGT00940000164601	ENSGT00940000157719.m	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095.a #19	ENSGT00390000016054.a #20	ENSGT00940000160189.i.b #22	ENSGT00940000160189.i.a #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887.e #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00940000156953 #37
Eastern brown snake	MODERN SPECIES	4	PNISR (ENSPTXG00000007694) #7	COQ3 (ENSPTXG00000007696) #8	FAXC (ENSPTXG00000007699) #9	FBXL4 (ENSPTXG00000007702) #10	POU3F2 (ENSPTXG00000007705) #11	ENSPTXG00000007707	MMS22L (ENSPTXG00000007709) #12	ENSPTXG00000007719 #13	ENSPTXG00000007720 #13	NDUFAF4 (ENSPTXG00000007722) #15	GPR63 (ENSPTXG00000007723) #16	FHL5 (ENSPTXG00000007724) #17	UFL1 (ENSPTXG00000007728) #18	ENSPTXG00000007733 #19	MANEA (ENSPTXG00000007735) #20	EPHA7 (ENSPTXG00000007737) #22	MAP3K7 (ENSPTXG00000007738) #23	ENSPTXG00000007740 #24	GJA10 (ENSPTXG00000007742) #25	CASP8AP2 (ENSPTXG00000007744) #26	MDN1 (ENSPTXG00000007755) #27	LYRM2 (ENSPTXG00000007976) #28	ANKRD6 (ENSPTXG00000007978) #29	RRAGD (ENSPTXG00000007981) #30	UBE2J1 (ENSPTXG00000007982) #31	GABRR2 (ENSPTXG00000007984) #32	GABRR1 (ENSPTXG00000007986) #33	PM20D2 (ENSPTXG00000007987) #34	SRSF12 (ENSPTXG00000007988) #35	PNRC1 (ENSPTXG00000007989) #36	RNGTT (ENSPTXG00000007990) #37
Blue-lipped sea krait	MODERN SPECIES	6116																ENSLLTG00000009607 #22
Elapidae	ANCESTRAL SPECIES		ENSGT00940000163155	ENSGT00940000157719	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095.a #19	ENSGT00390000016054.a #20	ENSGT00940000160189.i.b #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36	ENSGT00490000043453
Elapidae_a	ANCESTRAL SPECIES	6	ENSGT00940000155625	ENSGT00940000164601	ENSGT00940000157719.m	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095.a #19	ENSGT00390000016054.a #20	ENSGT00940000160189.i.b #22	ENSGT00940000160189.i.a #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Acanthophiinae	ANCESTRAL SPECIES	8	ENSGT00940000155625	ENSGT00940000164601	ENSGT00940000157719.m	ENSGT00730000111138 #7	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00390000011769 #12	ENSGT00940000157179.i.a #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095.a #19	ENSGT00390000016054.a #20	ENSGT00940000160189.i.b #22	ENSGT00940000160189.i.a #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887.e #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00940000160519 #35	ENSGT00530000063881.a.a #36
Mainland tiger snake	MODERN SPECIES	16	ENSNSUG00000017883	USP45 (ENSNSUG00000017882)	PNISR (ENSNSUG00000017881) #7	COQ3 (ENSNSUG00000017880) #8	FAXC (ENSNSUG00000017879) #9	FBXL4 (ENSNSUG00000017878) #10	MMS22L (ENSNSUG00000017876) #12	ENSNSUG00000017875 #13	ENSNSUG00000017874 #13	NDUFAF4 (ENSNSUG00000017873) #15	GPR63 (ENSNSUG00000017872) #16	FHL5 (ENSNSUG00000017871) #17	UFL1 (ENSNSUG00000017870) #18	ENSNSUG00000017869 #19	MANEA (ENSNSUG00000017868) #20	EPHA7 (ENSNSUG00000017867) #22	ENSNSUG00000017864	MAP3K7 (ENSNSUG00000017528) #23	ENSNSUG00000017526 #24	GJA10 (ENSNSUG00000017525) #25	CASP8AP2 (ENSNSUG00000017524) #26	MDN1 (ENSNSUG00000017521) #27	LYRM2 (ENSNSUG00000017520) #28	ENSNSUG00000017519 #29	ENSNSUG00000017518 #29	RRAGD (ENSNSUG00000017512) #30	UBE2J1 (ENSNSUG00000017510) #31	GABRR2 (ENSNSUG00000017509) #32	GABRR1 (ENSNSUG00000017506) #33	PM20D2 (ENSNSUG00000017502) #34	SRSF12 (ENSNSUG00000017501) #35
Blue-lipped sea krait	MODERN SPECIES	3891																ENSLLTG00000015182 #22	ENSLLTG00000015174 #22
Indian cobra	MODERN SPECIES		USP45 (ENSNNAG00000002498)	PNISR (ENSNNAG00000002535) #7	COQ3 (ENSNNAG00000002557) #8	FAXC (ENSNNAG00000002571) #9	FBXL4 (ENSNNAG00000002586) #10	POU3F2 (ENSNNAG00000002590) #11	MMS22L (ENSNNAG00000002613) #12	KLHL32 (ENSNNAG00000002678) #13	NDUFAF4 (ENSNNAG00000002699) #15	GPR63 (ENSNNAG00000002705) #16	FHL5 (ENSNNAG00000002712) #17	UFL1 (ENSNNAG00000002722) #18	ENSNNAG00000002743 #19	MANEA (ENSNNAG00000002745) #20	ENSNNAG00000002749	EPHA7 (ENSNNAG00000002760) #22	MAP3K7 (ENSNNAG00000002778) #23	BACH2 (ENSNNAG00000002797) #24	GJA10 (ENSNNAG00000002802) #25	CASP8AP2 (ENSNNAG00000002807) #26	MDN1 (ENSNNAG00000002821) #27	LYRM2 (ENSNNAG00000002865) #28	ANKRD6 (ENSNNAG00000002872) #29	RRAGD (ENSNNAG00000002891) #30	UBE2J1 (ENSNNAG00000002908) #31	GABRR2 (ENSNNAG00000002929) #32	GABRR1 (ENSNNAG00000002940) #33	PM20D2 (ENSNNAG00000002966) #34	SRSF12 (ENSNNAG00000002985) #35	PNRC1 (ENSNNAG00000002992) #36	ENSNNAG00000003000
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000160189.j #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000160189.j #22
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	219																ENSLLTG00000000263 #22
Blue-lipped sea krait	MODERN SPECIES	3891															ENSLLTG00000015182 #22	ENSLLTG00000015174 #22
Anura	ANCESTRAL SPECIES	8	ENSGT00730000111138 #7	ENSGT01060000248664	ENSGT00390000007284 #8	ENSGT00950000182919.A #9	ENSGT00940000155184 #10	ENSGT00940000162208 #11	ENSGT00390000011769 #12	ENSGT00940000157179 #13	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000154755	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT01090000260070.D #25	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34	ENSGT00530000063881.a.a #36	ENSGT00940000160519 #35	ENSGT00940000156953 #37	ENSGT01060000248564.a.a
Frog	MODERN SPECIES	5	ENSXETG00000039161	usp45 (ENSXETG00000006872)	faxc (ENSXETG00000000797) #9	pnisr (ENSXETG00000000800)	coq3 (ENSXETG00000000799) #8	pou3f2 (ENSXETG00000047635) #11	mms22l (ENSXETG00000000796) #12	klhl32 (ENSXETG00000000794) #13	gpr63 (ENSXETG00000048027) #16	fhl5 (ENSXETG00000001065) #17	ufl1 (ENSXETG00000001064) #18	ENSXETG00000001063	fut9 (ENSXETG00000043922) #19	manea (ENSXETG00000049211) #20	ENSXETG00000035490	epha7 (ENSXETG00000018746) #22	map3k7 (ENSXETG00000018737) #23	bach2 (ENSXETG00000036812) #24	gja10 (ENSXETG00000019125) #25	casp8ap2 (ENSXETG00000019121) #26	mdn1 (ENSXETG00000030475) #27	ankrd6 (ENSXETG00000019116) #29	ENSXETG00000042023	rragd (ENSXETG00000019115) #30	ube2j1 (ENSXETG00000019113) #31	GABRR2 (ENSXETG00000030855) #32	cep162 (ENSXETG00000033876)	ENSXETG00000038628 #33	ENSXETG00000043779	ENSXETG00000047976	ENSXETG00000042207
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000027804	ENSLLEG00000027822	MMS22L (ENSLLEG00000027848) #12	KLHL32 (ENSLLEG00000027990) #13	ENSLLEG00000028102 #15	GPR63 (ENSLLEG00000028126) #16	FHL5 (ENSLLEG00000028132) #17	UFL1 (ENSLLEG00000028160) #18	ENSLLEG00000004989	FUT9 (ENSLLEG00000005028) #19	ENSLLEG00000005037	ENSLLEG00000005049	ENSLLEG00000005062	MANEA (ENSLLEG00000005077) #20	ENSLLEG00000005094	EPHA7 (ENSLLEG00000005161) #22	MAP3K7 (ENSLLEG00000005493) #23	BACH2 (ENSLLEG00000006306) #24	ENSLLEG00000006351	ENSLLEG00000006360	ENSLLEG00000006391 #31	GABRR2 (ENSLLEG00000006447) #32	GABRR1 (ENSLLEG00000006560) #33	ENSLLEG00000006906	PM20D2 (ENSLLEG00000006925) #34	ENSLLEG00000006993 #30	POLR1B (ENSLLEG00000007080)	ENSLLEG00000007207	SEC23B (ENSLLEG00000007233)	ENSLLEG00000007307	ENSLLEG00000007335
Coelacanth	MODERN SPECIES	2270																EPHA7 (ENSLACG00000003129) #22
Actinopterygii	ANCESTRAL SPECIES	27	ENSGT00940000155723	ENSGT00940000159970	ENSGT00730000111419	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT00940000163438	ENSGT01100000263543.c	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT00940000167916	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33
Reedfish	MODERN SPECIES	11	LAMA4 (ENSECRG00000004788)	marcksa (ENSECRG00000004573)	HDAC2 (ENSECRG00000004542)	HS3ST5 (ENSECRG00000004527)	FRK (ENSECRG00000004132)	ENSECRG00000004061	col10a1a (ENSECRG00000004051)	nt5dc1 (ENSECRG00000003803)	dse (ENSECRG00000003776)	NDUFAF4 (ENSECRG00000003771) #15	GPR63 (ENSECRG00000003767) #16	fhl5 (ENSECRG00000003760) #17	ufl1 (ENSECRG00000003751) #18	fut9a (ENSECRG00000003744) #19	manea (ENSECRG00000003736) #20	EPHA7 (ENSECRG00000003713) #22	ENSECRG00000003696	ENSECRG00000003692	map3k7 (ENSECRG00000003677) #23	BACH2 (ENSECRG00000003666) #24	ankrd6b (ENSECRG00000003656) #29	rragd (ENSECRG00000003644) #30	ube2j1 (ENSECRG00000003639) #31	gabrr2a (ENSECRG00000003631) #32	gabrr1 (ENSECRG00000003623) #33	PM20D2 (ENSECRG00000003611) #34	PNRC1 (ENSECRG00000003599) #36	rngtt (ENSECRG00000003594) #37	cnr1 (ENSECRG00000003588)	akirin2 (ENSECRG00000003577)	ORC3 (ENSECRG00000003556)
Neopterygii	ANCESTRAL SPECIES	5	ENSGT00940000159970	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b	ENSGT00390000006522.b	ENSGT00390000001627 #15	ENSGT00950000183001.a.b.a #16	ENSGT00530000063596.A.j	ENSGT00950000183028.a.a.b #17	ENSGT00390000002112 #18	ENSGT00940000155095 #19	ENSGT00390000016054.a #20	ENSGT00940000160189 #22	ENSGT01100000263543.c	ENSGT00940000157785 #23	ENSGT00940000158228.a #24	ENSGT00940000167916	ENSGT01090000260070.D #25	ENSGT01030000235133	ENSGT00620000088063 #26	ENSGT00550000074802 #27	ENSGT00390000002957 #28	ENSGT00940000155887 #29	ENSGT00950000183031.A.a.b #30	ENSGT00940000156652 #31	ENSGT00940000156864 #32	ENSGT00940000158591 #33	ENSGT00390000003365 #34
Spotted gar	MODERN SPECIES	647	HDAC2 (ENSLOCG00000016977)	HS3ST5 (ENSLOCG00000016976)	FRK (ENSLOCG00000016973)	ENSLOCG00000016972	col10a1a (ENSLOCG00000016970)	nt5dc1 (ENSLOCG00000016969)	dse (ENSLOCG00000016968)	ENSLOCG00000018015 #15	ENSLOCG00000016967	GPR63 (ENSLOCG00000016966) #16	ENSLOCG00000016965	fhl5 (ENSLOCG00000016962) #17	ufl1 (ENSLOCG00000016960) #18	FUT9 (ENSLOCG00000018014) #19	manea (ENSLOCG00000016959) #20	EPHA7 (ENSLOCG00000016956) #22	ENSLOCG00000016955	map3k7 (ENSLOCG00000016953) #23	BACH2 (ENSLOCG00000016952) #24	gja10a (ENSLOCG00000016951) #25	casp8ap2 (ENSLOCG00000016949) #26	ENSLOCG00000016948 #27	ENSLOCG00000016947 #27	ENSLOCG00000016946 #27	MDN1 (ENSLOCG00000016945) #27	lyrm2 (ENSLOCG00000016944)	ankrd6b (ENSLOCG00000016943) #29	ube2j1 (ENSLOCG00000016942) #31	gabrr2a (ENSLOCG00000016939) #32	PM20D2 (ENSLOCG00000016938) #34	PNRC1 (ENSLOCG00000016937) #36
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000160189 #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000160189 #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000160189 #22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000160189 #22
Cod	MODERN SPECIES	13	ENSGMOG00000033727	ENSGMOG00000001620	ENSGMOG00000024735	ENSGMOG00000022930	ENSGMOG00000001990	MARCKS (ENSGMOG00000036500)	ENSGMOG00000027318	ENSGMOG00000028109	FRK (ENSGMOG00000018142)	COL10A1 (ENSGMOG00000027500)	NT5DC1 (ENSGMOG00000000025)	ENSGMOG00000035507	NDUFAF4 (ENSGMOG00000001994) #15	GPR63 (ENSGMOG00000020145) #16	ufl1 (ENSGMOG00000001434) #18	ENSGMOG00000022388 #22	ENSGMOG00000024912	MAP3K7 (ENSGMOG00000017415) #23	ENSGMOG00000031505	MDN1 (ENSGMOG00000009684) #27	LYRM2 (ENSGMOG00000032297) #28	ANKRD6 (ENSGMOG00000002106) #29	ube2j1 (ENSGMOG00000015107) #31	GABRR2 (ENSGMOG00000000454) #32	gabrr1 (ENSGMOG00000010603) #33	ENSGMOG00000003573	ENSGMOG00000008550	ENSGMOG00000008560	ENSGMOG00000008571	ENSGMOG00000008575	ENSGMOG00000008578
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000160189 #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000160189 #22
Huchen	MODERN SPECIES	382					ENSHHUG00000039307	camlg (ENSHHUG00000039312)	gps2 (ENSHHUG00000039319)	ENSHHUG00000039342	ctdnep1a (ENSHHUG00000039477)	plscr3a (ENSHHUG00000039509)	sox19a (ENSHHUG00000039521)	eif4a1b (ENSHHUG00000039528)	ENSHHUG00000039564	foxo1b (ENSHHUG00000039573)	ENSHHUG00000039574	EPHA7 (ENSHHUG00000039589) #22	ENSHHUG00000039591	ENSHHUG00000039595
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1511	ENSCMIG00000015527 #8	FAXC (ENSCMIG00000015523) #9	fbxl4 (ENSCMIG00000015520) #10	ENSCMIG00000015519	mms22l (ENSCMIG00000015508) #12	klhl32 (ENSCMIG00000015494) #13	NDUFAF4 (ENSCMIG00000015492) #15	GPR63 (ENSCMIG00000015491) #16	fhl5 (ENSCMIG00000015489) #17	ufl1 (ENSCMIG00000015399) #18	ENSCMIG00000015367	ENSCMIG00000015366 #19	FUT9 (ENSCMIG00000015365) #19	manea (ENSCMIG00000015362) #20	ENSCMIG00000015360	EPHA7 (ENSCMIG00000015303) #22	ENSCMIG00000015271	map3k7 (ENSCMIG00000015230) #23	ENSCMIG00000015212 #24	ENSCMIG00000015210	gja10a (ENSCMIG00000015208) #25	ENSCMIG00000015205	kcnk3a (ENSCMIG00000015203)	slc35f6 (ENSCMIG00000015200)	clu (ENSCMIG00000015198)	SCARA3 (ENSCMIG00000015193)	ENSCMIG00000015189	ENSCMIG00000015188	ccdc25 (ENSCMIG00000015183)	ENSCMIG00000015178	pbk (ENSCMIG00000015175)
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1521	col9a2 (ENSCMIG00000019177)	ENSCMIG00000019174	ENSCMIG00000019171	ENSCMIG00000019166	ENSCMIG00000019158	ENSCMIG00000019133	ENSCMIG00000019131	nipal3 (ENSCMIG00000019129)	ENSCMIG00000019126	INPP5B (ENSCMIG00000019117)	mtf1 (ENSCMIG00000019108)	yrdc (ENSCMIG00000019103)	ENSCMIG00000019100 #20	ENSCMIG00000019098	ENSCMIG00000019096 #22	ENSCMIG00000019092 #22	ENSCMIG00000019084	ENSCMIG00000019081	ENSCMIG00000019077	C1orf109 (ENSCMIG00000019075)	GRIK3 (ENSCMIG00000018961)	ZC3H12A (ENSCMIG00000018915)	nt5c1aa (ENSCMIG00000018912)	ENSCMIG00000018847	sytl1 (ENSCMIG00000018815)	slc9a1b (ENSCMIG00000018806)	wdtc1 (ENSCMIG00000018800)	ENSCMIG00000018798	ENSCMIG00000018797	nudc (ENSCMIG00000018794)	nr0b2a (ENSCMIG00000018792)
Elephant shark	MODERN SPECIES	1521	smap2 (ENSCMIG00000019179)	col9a2 (ENSCMIG00000019177)	ENSCMIG00000019174	ENSCMIG00000019171	ENSCMIG00000019166	ENSCMIG00000019158	ENSCMIG00000019133	ENSCMIG00000019131	nipal3 (ENSCMIG00000019129)	ENSCMIG00000019126	INPP5B (ENSCMIG00000019117)	mtf1 (ENSCMIG00000019108)	yrdc (ENSCMIG00000019103)	ENSCMIG00000019100 #20	ENSCMIG00000019098	ENSCMIG00000019096 #22	ENSCMIG00000019092 #22	ENSCMIG00000019084	ENSCMIG00000019081	ENSCMIG00000019077	C1orf109 (ENSCMIG00000019075)	GRIK3 (ENSCMIG00000018961)	ZC3H12A (ENSCMIG00000018915)	nt5c1aa (ENSCMIG00000018912)	ENSCMIG00000018847	sytl1 (ENSCMIG00000018815)	slc9a1b (ENSCMIG00000018806)	wdtc1 (ENSCMIG00000018800)	ENSCMIG00000018798	ENSCMIG00000018797	nudc (ENSCMIG00000018794)