Eutheria	ANCESTRAL SPECIES	9	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993 #28	ENSGT00940000155371 #27	ENSGT00940000161847	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000161821 #26	ENSGT00940000154723.b #25	ENSGT00940000162892	ENSGT00940000154993 #28	ENSGT00940000155371 #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000161821 #26	ENSGT00940000154723.b #25	ENSGT00940000162892	ENSGT00940000154993 #28	ENSGT00940000155371 #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36
Glires	ANCESTRAL SPECIES	5	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000161821 #26	ENSGT00940000154723.b #25	ENSGT00940000162892	ENSGT00940000154993 #28	ENSGT00940000155371 #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36
Rodentia	ANCESTRAL SPECIES	6	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993.k.a ##28	ENSGT00940000155371 #27	ENSGT00940000154993.k.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993.k.a ##28	ENSGT00940000154993.l ##28	ENSGT00940000155371 #27	ENSGT00940000154993.k.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993.k.a ##28	ENSGT00940000155371 #27	ENSGT00940000154993.k.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35
Muroidea	ANCESTRAL SPECIES	15	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993.k.a ##28	ENSGT00940000155371 #27	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993.k.a ##28	ENSGT00940000155371 #27	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00980000198621	ENSGT00940000163287	ENSGT00390000002471 #34
Murinae	ANCESTRAL SPECIES	18	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000155371 #27	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36
Mus	ANCESTRAL SPECIES	16	ENSGT00390000008815	ENSGT00980000198488.m.a.b.a.b.a.a.a.c	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000155371 #27	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450.f #32	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b
Shrew mouse	MODERN SPECIES	9	Pfdn6 (MGP_PahariEiJ_G0020430) #7	Wdr46 (MGP_PahariEiJ_G0020431) #8	B3galt4 (MGP_PahariEiJ_G0020432) #9	MGP_PahariEiJ_G0020433 #10	Ring1 (MGP_PahariEiJ_G0020434) #11	Hsd17b8 (MGP_PahariEiJ_G0020435) #12	Slc39a7 (MGP_PahariEiJ_G0020436) #13	Rxrb (MGP_PahariEiJ_G0020437) #14	Col11a2 (MGP_PahariEiJ_G0020438) #15	H2-Oa (MGP_PahariEiJ_G0020439) #16	Brd2 (MGP_PahariEiJ_G0020440) #17	H2-DMa (MGP_PahariEiJ_G0020441) #18	Psmb9 (MGP_PahariEiJ_G0020442) #19	Tap1 (MGP_PahariEiJ_G0020443) #20	Psmb8 (MGP_PahariEiJ_G0020444) #21	Tap2 (MGP_PahariEiJ_G0020445) #22	MGP_PahariEiJ_G0020446 #23	H2-Ob (MGP_PahariEiJ_G0020447) #24	H2-Ab1 (MGP_PahariEiJ_G0020448) #25	H2-Aa (MGP_PahariEiJ_G0020449) #26	MGP_PahariEiJ_G0020450 #27	H2-Eb2 (MGP_PahariEiJ_G0020451) #28	Btnl2 (MGP_PahariEiJ_G0020452) #29	Btnl1 (MGP_PahariEiJ_G0020453) #30	Tsbp1 (MGP_PahariEiJ_G0020454) #31	MGP_PahariEiJ_G0020455 #32	Notch4 (MGP_PahariEiJ_G0020456) #33	Gpsm3 (MGP_PahariEiJ_G0020457) #34	Pbx2 (MGP_PahariEiJ_G0020458) #35	Ager (MGP_PahariEiJ_G0020459) #36	Agpat1 (MGP_PahariEiJ_G0020461) #37
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000008815	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381.h	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000155371 #27	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450.f #32	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b.c.a
Mus_B	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381.g	ENSGT00940000160381.h	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000155371 #27	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450.e ##32	ENSGT00940000162450.f #32	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36
Mus_C	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381.g	ENSGT00940000160381.h	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000155371 #27	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450.e ##32	ENSGT00940000162450.f #32	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36
Steppe mouse	MODERN SPECIES	2564	ENSMSIG00000012243	Ring1 (ENSMSIG00000012190) #11	ENSMSIG00000012153 #12	Slc39a7 (ENSMSIG00000012137) #13	Rxrb (ENSMSIG00000012091) #14	Col11a2 (ENSMSIG00000011347) #15	ENSMSIG00000011214	H2-Oa (ENSMSIG00000011198) #16	Brd2 (ENSMSIG00000011118) #17	H2-DMa (ENSMSIG00000011088) #18	H2-DMb1 (ENSMSIG00000011055)	Psmb9 (ENSMSIG00000011042) #19	ENSMSIG00000011012 #20	Psmb8 (ENSMSIG00000010986) #21	ENSMSIG00000010972	Tap2 (ENSMSIG00000010919) #22	H2-Ob (ENSMSIG00000010868) #24	ENSMSIG00000010843 #25	H2-Aa (ENSMSIG00000010823) #26	ENSMSIG00000010807 #27	H2-Eb2 (ENSMSIG00000010788) #28	H2-Ea (ENSMSIG00000010776)	Btnl2 (ENSMSIG00000010760) #29	Btnl1 (ENSMSIG00000010748) #30	ENSMSIG00000010738	Tsbp1 (ENSMSIG00000010478) #31	Btnl4 (ENSMSIG00000010440) ##32	ENSMSIG00000010410 #32
spretus	MODERN SPECIES	8	B3galt4 (MGP_SPRETEiJ_G0022339) #9	MGP_SPRETEiJ_G0022340 ##10	Ring1 (MGP_SPRETEiJ_G0022342) #11	Hsd17b8 (MGP_SPRETEiJ_G0022343) #12	Slc39a7 (MGP_SPRETEiJ_G0022344) #13	Rxrb (MGP_SPRETEiJ_G0022345) #14	Col11a2 (MGP_SPRETEiJ_G0022346) #15	H2-Oa (MGP_SPRETEiJ_G0022347) #16	Brd2 (MGP_SPRETEiJ_G0022348) #17	H2-DMa (MGP_SPRETEiJ_G0022349) #18	MGP_SPRETEiJ_G0022350	H2-DMb2 (MGP_SPRETEiJ_G0022351)	Psmb9 (MGP_SPRETEiJ_G0022352) #19	Tap1 (MGP_SPRETEiJ_G0022353) #20	Psmb8 (MGP_SPRETEiJ_G0022354) #21	Tap2 (MGP_SPRETEiJ_G0022355) #22	MGP_SPRETEiJ_G0022356	H2-Ob (MGP_SPRETEiJ_G0022357) #24	H2-Ab1 (MGP_SPRETEiJ_G0022358) #25	H2-Aa (MGP_SPRETEiJ_G0022359) #26	MGP_SPRETEiJ_G0022360 #27	H2-Eb2 (MGP_SPRETEiJ_G0022361) #28	Btnl2 (MGP_SPRETEiJ_G0022362) #29	Btnl1 (MGP_SPRETEiJ_G0022363) #30	Tsbp1 (MGP_SPRETEiJ_G0022364) #31	MGP_SPRETEiJ_G0022366 ##32	Notch4 (MGP_SPRETEiJ_G0022367) #33	Gpsm3 (MGP_SPRETEiJ_G0022368) #34	Pbx2 (MGP_SPRETEiJ_G0022369) #35	Ager (MGP_SPRETEiJ_G0022370) #36	Rnf5 (MGP_SPRETEiJ_G0022371)
Mouse	MODERN SPECIES	8	Vps52 (ENSMUSG00000024319)	H2-K1 (ENSMUSG00000061232)	Ring1 (ENSMUSG00000024325) #11	Hsd17b8 (ENSMUSG00000073422) #12	Slc39a7 (ENSMUSG00000024327) #13	Rxrb (ENSMUSG00000039656) #14	Col11a2 (ENSMUSG00000024330) #15	H2-Oa (ENSMUSG00000024334) #16	Brd2 (ENSMUSG00000024335) #17	H2-DMa (ENSMUSG00000037649) #18	H2-DMb2 (ENSMUSG00000037548)	H2-DMb1 (ENSMUSG00000079547)	Psmb9 (ENSMUSG00000096727) #19	Tap1 (ENSMUSG00000037321) #20	Psmb8 (ENSMUSG00000024338) #21	Tap2 (ENSMUSG00000024339) #22	H2-Ob (ENSMUSG00000041538) #24	H2-Ab1 (ENSMUSG00000073421) #25	H2-Aa (ENSMUSG00000036594) #26	H2-Eb1 (ENSMUSG00000060586) #27	H2-Eb2 (ENSMUSG00000067341) #28	H2-Ea (ENSMUSG00000036322)	Btnl2 (ENSMUSG00000024340) #29	Btnl1 (ENSMUSG00000062638) #30	Tsbp1 (ENSMUSG00000057246) #31	Btnl4 (ENSMUSG00000058435) ##32	Btnl6 (ENSMUSG00000092618) #32	Notch4 (ENSMUSG00000015468) #33	Gpsm3 (ENSMUSG00000034786) #34	Pbx2 (ENSMUSG00000034673) #35	Ager (ENSMUSG00000015452) #36
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021434	MGP_CAROLIEiJ_G0021435	Ring1 (MGP_CAROLIEiJ_G0021436) #11	Hsd17b8 (MGP_CAROLIEiJ_G0021437) #12	Slc39a7 (MGP_CAROLIEiJ_G0021438) #13	Rxrb (MGP_CAROLIEiJ_G0021439) #14	Col11a2 (MGP_CAROLIEiJ_G0021440) #15	H2-Oa (MGP_CAROLIEiJ_G0021441) #16	Brd2 (MGP_CAROLIEiJ_G0021442) #17	H2-DMa (MGP_CAROLIEiJ_G0021443) #18	MGP_CAROLIEiJ_G0021444	MGP_CAROLIEiJ_G0021445	Psmb9 (MGP_CAROLIEiJ_G0021446) #19	Tap1 (MGP_CAROLIEiJ_G0021447) #20	Psmb8 (MGP_CAROLIEiJ_G0021448) #21	Tap2 (MGP_CAROLIEiJ_G0021449) #22	MGP_CAROLIEiJ_G0021450	H2-Ob (MGP_CAROLIEiJ_G0021451) #24	H2-Ab1 (MGP_CAROLIEiJ_G0021452) #25	H2-Aa (MGP_CAROLIEiJ_G0021453) #26	MGP_CAROLIEiJ_G0021454 #27	H2-Eb2 (MGP_CAROLIEiJ_G0021455) #28	Btnl2 (MGP_CAROLIEiJ_G0021456) #29	Btnl1 (MGP_CAROLIEiJ_G0021457) #30	Tsbp1 (MGP_CAROLIEiJ_G0021458) #31	Btnl6 (MGP_CAROLIEiJ_G0021459) #32	MGP_CAROLIEiJ_G0021460 ##32	Notch4 (MGP_CAROLIEiJ_G0021461) #33	Gpsm3 (MGP_CAROLIEiJ_G0021462) #34	Pbx2 (MGP_CAROLIEiJ_G0021463) #35	Ager (MGP_CAROLIEiJ_G0021464) #36
Rat	MODERN SPECIES	12	Vps52 (ENSRNOG00000000470)	Ring1 (ENSRNOG00000000467) #11	Hsd17b8 (ENSRNOG00000000466) #12	Slc39a7 (ENSRNOG00000000465) #13	Rxrb (ENSRNOG00000000464) #14	Col11a2 (ENSRNOG00000000463) #15	RT1-Hb-ps1 (ENSRNOG00000061936)	RT1-Ha (ENSRNOG00000045908)	RT1-DOa (ENSRNOG00000026762) #16	Brd2 (ENSRNOG00000000461) #17	RT1-DMa (ENSRNOG00000066773) #18	RT1-DMb (ENSRNOG00000049491)	Psmb9 (ENSRNOG00000000459) #19	Tap1 (ENSRNOG00000000457) #20	Psmb8 (ENSRNOG00000000456) #21	Tap2 (ENSRNOG00000000455) #22	RT1-DOb (ENSRNOG00000000454) #24	RT1-Bb (ENSRNOG00000032708) #25	RT1-Ba (ENSRNOG00000000451) #26	RT1-Db1 (ENSRNOG00000033215) #27	RT1-Db2 (ENSRNOG00000030431) #27	RT1-Da (ENSRNOG00000032844)	Btnl2 (ENSRNOG00000028541) #29	Btnl3 (ENSRNOG00000039396) #30	Tsbp1 (ENSRNOG00000039398) #31	Btn3a2 (ENSRNOG00000068592) #32	Btnl5 (ENSRNOG00000047304) #32	AABR07044388.4 (ENSRNOG00000052710) #32	Btnl7 (ENSRNOG00000000446) #32	Btnl8 (ENSRNOG00000064738) #32	Btnl4 (ENSRNOG00000068088) #32
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993.k.a ##28	ENSGT00940000155371 #27	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00940000162450 #32	ENSGT00980000198621	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b
Cricetinae	ANCESTRAL SPECIES	43		ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993.k.b.b #28	ENSGT00940000154993.k.a ##28	ENSGT00940000155371 #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00940000162450 #32	ENSGT00980000198621	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b
Golden Hamster	MODERN SPECIES	856					Ring1 (ENSMAUG00000012254) #11	Hsd17b8 (ENSMAUG00000013407) #12	Slc39a7 (ENSMAUG00000015255) #13	Rxrb (ENSMAUG00000009043) #14	Col11a2 (ENSMAUG00000021348) #15	Brd2 (ENSMAUG00000006799) #17	H2-DMa (ENSMAUG00000000861) #18	ENSMAUG00000008923	Psmb9 (ENSMAUG00000007584) #19	Tap1 (ENSMAUG00000017718) #20	Psmb8 (ENSMAUG00000003396) #21	Tap2 (ENSMAUG00000015081) #22	H2-Ob (ENSMAUG00000007698) #24	H2-Ab1 (ENSMAUG00000020395) #25	H2-Aa (ENSMAUG00000003363) #26	H2-Eb2 (ENSMAUG00000018151) #28	Btnl2 (ENSMAUG00000003530) #29	Btnl1 (ENSMAUG00000016817) #30	ENSMAUG00000015609 #32	ENSMAUG00000009410	Notch4 (ENSMAUG00000015895) #33	Gpsm3 (ENSMAUG00000013374) #34	Pbx2 (ENSMAUG00000003275) #35	Ager (ENSMAUG00000001006) #36	Rnf5 (ENSMAUG00000000684)	Agpat1 (ENSMAUG00000011278) #37	Egfl8 (ENSMAUG00000013647)
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00390000008815	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993.l ##28	ENSGT00940000155371 #27	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00940000162450 #32	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37
Prairie vole	MODERN SPECIES	352	Vps52 (ENSMOCG00000004229)	ENSMOCG00000014473	Ring1 (ENSMOCG00000020973) #11	Hsd17b8 (ENSMOCG00000001695) #12	Slc39a7 (ENSMOCG00000019993) #13	Rxrb (ENSMOCG00000000374) #14	Col11a2 (ENSMOCG00000016852) #15	ENSMOCG00000010963	H2-Oa (ENSMOCG00000020236) #16	Brd2 (ENSMOCG00000016368) #17	H2-DMa (ENSMOCG00000002744) #18	ENSMOCG00000022309	Psmb9 (ENSMOCG00000005369) #19	Tap1 (ENSMOCG00000019762) #20	Psmb8 (ENSMOCG00000014719) #21	Tap2 (ENSMOCG00000022898) #22	H2-Ob (ENSMOCG00000008562) #24	H2-Ab1 (ENSMOCG00000008439) #25	ENSMOCG00000013355 #26	ENSMOCG00000017941 ##28	ENSMOCG00000019721 #27	H2-Ea (ENSMOCG00000008786)	Btnl2 (ENSMOCG00000014437) #29	Btnl1 (ENSMOCG00000018715) #30	ENSMOCG00000011431 #32	Rnf39 (ENSMOCG00000015333)	Ppp1r11 (ENSMOCG00000002207)	Polr1h (ENSMOCG00000008537)	Polr1has (ENSMOCG00000015745)	H2-M5 (ENSMOCG00000004410)	Mog (ENSMOCG00000019437)
Northern American deer mouse	MODERN SPECIES	13	ENSPEMG00000024622	Ring1 (ENSPEMG00000019238) #11	Hsd17b8 (ENSPEMG00000012925) #12	Slc39a7 (ENSPEMG00000003403) #13	Rxrb (ENSPEMG00000018454) #14	Col11a2 (ENSPEMG00000016918) #15	ENSPEMG00000026148	ENSPEMG00000015442	H2-Oa (ENSPEMG00000011158) #16	Brd2 (ENSPEMG00000018138) #17	H2-DMa (ENSPEMG00000013203) #18	ENSPEMG00000018040	Psmb9 (ENSPEMG00000009609) #19	Tap1 (ENSPEMG00000012461) #20	Psmb8 (ENSPEMG00000012170) #21	Tap2 (ENSPEMG00000010503) #22	H2-Ob (ENSPEMG00000001796) #24	ENSPEMG00000012719 #25	ENSPEMG00000007095 #26	ENSPEMG00000015401 #25	ENSPEMG00000012679 #26	H2-Eb1 (ENSPEMG00000002889) #27	H2-Eb2 (ENSPEMG00000006456) #28	H2-Ea (ENSPEMG00000008261)	Btnl2 (ENSPEMG00000007431) #29	Btnl1 (ENSPEMG00000008094) #30	ENSPEMG00000028515 ##28	ENSPEMG00000011748 #32	ENSPEMG00000026840 #32	ENSPEMG00000026496 #32	Notch4 (ENSPEMG00000015181) #33
Lesser Egyptian jerboa	MODERN SPECIES	41	Rps18 (ENSJJAG00000018899) #10	Vps52 (ENSJJAG00000020884)	Ring1 (ENSJJAG00000022246) #11	Hsd17b8 (ENSJJAG00000021794) #12	Slc39a7 (ENSJJAG00000014121) #13	Rxrb (ENSJJAG00000004710) #14	Col11a2 (ENSJJAG00000010448) #15	ENSJJAG00000023713	H2-Oa (ENSJJAG00000000542) #16	Brd2 (ENSJJAG00000010183) #17	H2-DMa (ENSJJAG00000012555) #18	ENSJJAG00000004664	Psmb9 (ENSJJAG00000022884) #19	Tap1 (ENSJJAG00000022861) #20	Psmb8 (ENSJJAG00000023598) #21	Tap2 (ENSJJAG00000004300) #22	ENSJJAG00000003836	H2-Ob (ENSJJAG00000022338) #24
Kangaroo rat	MODERN SPECIES	519	Vps52 (ENSDORG00000013822)	Ring1 (ENSDORG00000013820) #11	Hsd17b8 (ENSDORG00000013819) #12	Slc39a7 (ENSDORG00000013818) #13	Rxrb (ENSDORG00000013816) #14	Col11a2 (ENSDORG00000013815) #15	ENSDORG00000024606	ENSDORG00000004500	H2-Oa (ENSDORG00000004499) #16	Brd2 (ENSDORG00000004497) #17	ENSDORG00000005173 #18	ENSDORG00000005172	Psmb9 (ENSDORG00000006231) #19	Tap1 (ENSDORG00000029698) #20	Psmb8 (ENSDORG00000028592) #21	Tap2 (ENSDORG00000008311) #22	ENSDORG00000008310 #24	ENSDORG00000011904 #27	ENSDORG00000006991 ##28	ENSDORG00000029602 ##28	ENSDORG00000024908 #27	H2-Ea (ENSDORG00000014782)	ENSDORG00000028297	ENSDORG00000009936	Gpsm3 (ENSDORG00000025609) #34	Pbx2 (ENSDORG00000009932) #35	ENSDORG00000009930 #36	Rnf5 (ENSDORG00000023271)	Agpat1 (ENSDORG00000009925) #37	Egfl8 (ENSDORG00000019824)	Ppt2 (ENSDORG00000029200)
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993.k.a ##28	ENSGT00940000155371 #27	ENSGT00940000154993.k.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000162892	ENSGT00940000154993.k.a ##28	ENSGT00940000155371 #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00940000162450 #32	ENSGT00980000198621	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	42	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993.k.a ##28	ENSGT00940000155371 #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00940000162450 #32	ENSGT00980000198621	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000155371 #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00940000162450 #32	ENSGT00980000198621	ENSGT00940000154993.k.a ##28	ENSGT00940000154993.k.b #28	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b
Long-tailed chinchilla	MODERN SPECIES	144	VPS52 (ENSCLAG00000008115)	RING1 (ENSCLAG00000009149) #11	HSD17B8 (ENSCLAG00000007885) #12	SLC39A7 (ENSCLAG00000014475) #13	RXRB (ENSCLAG00000013699) #14	COL11A2 (ENSCLAG00000007783) #15	HLA-DPA1 (ENSCLAG00000010668)	HLA-DPB1 (ENSCLAG00000013126)	HLA-DOA (ENSCLAG00000011531) #16	BRD2 (ENSCLAG00000009750) #17	HLA-DMA (ENSCLAG00000014679) #18	HLA-DMB (ENSCLAG00000008468)	PSMB9 (ENSCLAG00000007918) #19	TAP1 (ENSCLAG00000008052) #20	PSMB8 (ENSCLAG00000006990) #21	TAP2 (ENSCLAG00000012654) #22	HLA-DOB (ENSCLAG00000011735) #24	HLA-DQB2 (ENSCLAG00000011869) #25	ENSCLAG00000009507 #26	ENSCLAG00000016042 #27	ENSCLAG00000013098 #27	HLA-DRA (ENSCLAG00000009768)	BTNL2 (ENSCLAG00000007142) #29	ENSCLAG00000015677 #30	ENSCLAG00000011744 #32	ENSCLAG00000009141	GPSM3 (ENSCLAG00000007406) #34	PBX2 (ENSCLAG00000007051) #35	AGER (ENSCLAG00000013330) #36	RNF5 (ENSCLAG00000009576)	ENSCLAG00000008617 #37
Degu	MODERN SPECIES	46	WDR46 (ENSODEG00000017342) #8	B3GALT4 (ENSODEG00000017281) #9	ENSODEG00000017344 ##10	VPS52 (ENSODEG00000017744)	RING1 (ENSODEG00000017691) #11	HSD17B8 (ENSODEG00000017486) #12	SLC39A7 (ENSODEG00000017361) #13	RXRB (ENSODEG00000017146) #14	COL11A2 (ENSODEG00000017513) #15	HLA-DPA1 (ENSODEG00000017716)	HLA-DOA (ENSODEG00000017569) #16	BRD2 (ENSODEG00000017239) #17	ENSODEG00000017381 #18	HLA-DMB (ENSODEG00000017802)	PSMB8 (ENSODEG00000017662) #21	TAP2 (ENSODEG00000017797) #22	PSMB9 (ENSODEG00000017656) #19	TAP1 (ENSODEG00000017484) #20	HLA-DOB (ENSODEG00000017495) #24	ENSODEG00000017249 #25	ENSODEG00000017510 #26	ENSODEG00000017402 ##28	ENSODEG00000017435 #28	ENSODEG00000017398	ENSODEG00000017414 #29	ENSODEG00000017401	ENSODEG00000017653	ENSODEG00000017483 #34	PBX2 (ENSODEG00000017449) #35	ENSODEG00000017466 #36	ENSODEG00000017614
Guinea pig	MODERN SPECIES	15	HSD17B8 (ENSCPOG00000013940) #12	SLC39A7 (ENSCPOG00000023790) #13	RXRB (ENSCPOG00000013936) #14	COL11A2 (ENSCPOG00000020466) #15	ENSCPOG00000035477	ENSCPOG00000024142	ENSCPOG00000032859	ENSCPOG00000002427	HLA-DOA (ENSCPOG00000012562) #16	BRD2 (ENSCPOG00000002811) #17	HLA-DMA (ENSCPOG00000015044) #18	HLA-DMB (ENSCPOG00000002810)	PSMB9 (ENSCPOG00000002121) #19	TAP1 (ENSCPOG00000026988) #20	PSMB8 (ENSCPOG00000000729) #21	TAP2 (ENSCPOG00000038951) #22	HLA-DOB (ENSCPOG00000033895) #24	HLA-DQB2 (ENSCPOG00000038606) #25	ENSCPOG00000014463	ENSCPOG00000040083 ##28	ENSCPOG00000003574 ##28	ENSCPOG00000036465 #27	HLA-DRA (ENSCPOG00000012309)	BTNL2 (ENSCPOG00000004277) #29	ENSCPOG00000023019 #30	ENSCPOG00000000591 #33	PBX2 (ENSCPOG00000037281) #35	AGER (ENSCPOG00000000590) #36	RNF5 (ENSCPOG00000030132)	AGPAT1 (ENSCPOG00000037644) #37	EGFL8 (ENSCPOG00000040046)
Naked mole-rat female	MODERN SPECIES	4	VPS52 (ENSHGLG00000017226)	RING1 (ENSHGLG00000019474) #11	HSD17B8 (ENSHGLG00000019497) #12	SLC39A7 (ENSHGLG00000018434) #13	RXRB (ENSHGLG00000018456) #14	COL11A2 (ENSHGLG00000018531) #15	HLA-DPB1 (ENSHGLG00000019389)	HLA-DPA1 (ENSHGLG00000019266)	HLA-DOA (ENSHGLG00000019255) #16	BRD2 (ENSHGLG00000019334) #17	HLA-DMA (ENSHGLG00000017048) #18	HLA-DMB (ENSHGLG00000017060)	PSMB9 (ENSHGLG00000036914) #19	TAP1 (ENSHGLG00000017081) #20	PSMB8 (ENSHGLG00000017087) #21	TAP2 (ENSHGLG00000019356) #22	HLA-DOB (ENSHGLG00000016652) #24	HLA-DQB2 (ENSHGLG00000038840) #25	ENSHGLG00000043086	ENSHGLG00000011398	ENSHGLG00000011613 ##28	ENSHGLG00000011873 ##28	ENSHGLG00000012074 #28	HLA-DRA (ENSHGLG00000012243)	GPSM3 (ENSHGLG00000012807) #34	ENSHGLG00000013320 #35	AGER (ENSHGLG00000013559) #36	ENSHGLG00000048713	AGPAT1 (ENSHGLG00000013956) #37	EGFL8 (ENSHGLG00000014379)	PPT2 (ENSHGLG00000016656)
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993.k.a ##28	ENSGT00940000155371 #27	ENSGT00940000154993.k.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36
Marmotini	ANCESTRAL SPECIES	18	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353.i #24	ENSGT00940000161821.l.a #26	ENSGT00940000154723.b #25	ENSGT00940000161821.k #26	ENSGT00940000154993.k.a ##28	ENSGT00940000154993.k.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00940000162450.b.a #32	ENSGT00940000163287	ENSGT00980000198621	ENSGT00390000002471 #34	ENSGT00940000160293 #35
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353.i #24
Arctic ground squirrel	MODERN SPECIES	1178													PSMB9 (ENSUPAG00010005439) #19	TAP1 (ENSUPAG00010004755) #20	PSMB8 (ENSUPAG00010004745) #21	TAP2 (ENSUPAG00010004733) #22	ENSUPAG00010004730 #24
Squirrel	MODERN SPECIES	76	VPS52 (ENSSTOG00000002397)	RING1 (ENSSTOG00000026166) #11	HSD17B8 (ENSSTOG00000020853) #12	SLC39A7 (ENSSTOG00000014304) #13	RXRB (ENSSTOG00000027099) #14	COL11A2 (ENSSTOG00000003578) #15	HLA-DPB1 (ENSSTOG00000003567)	HLA-DPA1 (ENSSTOG00000003558)	HLA-DOA (ENSSTOG00000010820) #16	BRD2 (ENSSTOG00000010807) #17	HLA-DMA (ENSSTOG00000009246) #18	HLA-DMB (ENSSTOG00000019821)	PSMB9 (ENSSTOG00000003475) #19	TAP1 (ENSSTOG00000003451) #20	PSMB8 (ENSSTOG00000019724) #21	TAP2 (ENSSTOG00000003413) #22	ENSSTOG00000030715	HLA-DOB (ENSSTOG00000003405) #24	ENSSTOG00000028098
Alpin marmot	MODERN SPECIES	20	VPS52 (ENSMMMG00000024234)	RING1 (ENSMMMG00000024233) #11	HSD17B8 (ENSMMMG00000024232) #12	SLC39A7 (ENSMMMG00000024231) #13	RXRB (ENSMMMG00000024230) #14	COL11A2 (ENSMMMG00000024229) #15	HLA-DPB1 (ENSMMMG00000024228)	HLA-DPA1 (ENSMMMG00000024227)	HLA-DOA (ENSMMMG00000024226) #16	BRD2 (ENSMMMG00000024225) #17	HLA-DMA (ENSMMMG00000024224) #18	HLA-DMB (ENSMMMG00000024223)	PSMB9 (ENSMMMG00000024222) #19	TAP1 (ENSMMMG00000024221) #20	PSMB8 (ENSMMMG00000024220) #21	TAP2 (ENSMMMG00000024218) #22	HLA-DOB (ENSMMMG00000024217) #24	ENSMMMG00000024215	ENSMMMG00000024056 #25	ENSMMMG00000020395	ENSMMMG00000018808 #25	ENSMMMG00000018797	ENSMMMG00000018785 #26	ENSMMMG00000018780 ##28	ENSMMMG00000018777 #28	HLA-DRA (ENSMMMG00000018744)	BTNL2 (ENSMMMG00000018734) #29	ENSMMMG00000018723 #30	ENSMMMG00000018720	ENSMMMG00000018661 #32	ENSMMMG00000018655 #32
Eurasian red squirrel	MODERN SPECIES	16	ENSSVLG00005004778	RING1 (ENSSVLG00005004804) #11	HSD17B8 (ENSSVLG00005004902) #12	SLC39A7 (ENSSVLG00005004925) #13	RXRB (ENSSVLG00005004952) #14	COL11A2 (ENSSVLG00005005202) #15	HLA-DPB1 (ENSSVLG00005006269)	HLA-DPA1 (ENSSVLG00005006304)	HLA-DOA (ENSSVLG00005006335) #16	BRD2 (ENSSVLG00005006374) #17	HLA-DMA (ENSSVLG00005006465) #18	HLA-DMB (ENSSVLG00005006515)	PSMB9 (ENSSVLG00005006563) #19	TAP1 (ENSSVLG00005006618) #20	PSMB8 (ENSSVLG00005006647) #21	TAP2 (ENSSVLG00005006696) #22	HLA-DOB (ENSSVLG00005006746) #24	ENSSVLG00005006864 #25	ENSSVLG00005007173 #26	HLA-DQB2 (ENSSVLG00005007368) #25	ENSSVLG00005007455 #26	ENSSVLG00005007482 ##28	ENSSVLG00005007511 #27	ENSSVLG00005007546 #28	HLA-DRA (ENSSVLG00005007588)	BTNL2 (ENSSVLG00005007627) #29	ENSSVLG00005007707	ENSSVLG00005007731	ENSSVLG00005007751	ENSSVLG00005008664 #32	NOTCH4 (ENSSVLG00005008720)
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000161821 #26	ENSGT00940000154993 #28	ENSGT00940000154723.b #25	ENSGT00940000155371 #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957
Rabbit	MODERN SPECIES	3	B3GALT4 (ENSOCUG00000010550) #9	ENSOCUG00000010546 ##10	VPS52 (ENSOCUG00000010533)	HSD17B8 (ENSOCUG00000020995) #12	SLC39A7 (ENSOCUG00000011598) #13	RXRB (ENSOCUG00000011590) #14	COL11A2 (ENSOCUG00000016497) #15	HLA-DPB1 (ENSOCUG00000008721)	ENSOCUG00000003319 #16	BRD2 (ENSOCUG00000003097) #17	HLA-DMA (ENSOCUG00000022573) #18	HLA-DMB (ENSOCUG00000026567)	ENSOCUG00000002139 #19	TAP1 (ENSOCUG00000002135) #20	PSMB8 (ENSOCUG00000002131) #21	TAP2 (ENSOCUG00000002489) #22	HLA-DOB (ENSOCUG00000029437) #24	ENSOCUG00000002480 #26	HLA-DQB1 (ENSOCUG00000002485) #25	ENSOCUG00000030453 #27	ENSOCUG00000029731 #28	HLA-DRA (ENSOCUG00000009103)	ENSOCUG00000025822 #30	ENSOCUG00000006769 #29	ENSOCUG00000021762	SFTA2 (ENSOCUG00000035950)	GTF2H4 (ENSOCUG00000021496)	DDR1 (ENSOCUG00000016487)	IER3 (ENSOCUG00000016451)	FLOT1 (ENSOCUG00000017308)	TUBB (ENSOCUG00000002187)
Pika	MODERN SPECIES	4582																ENSOPRG00000001644 #22	ENSOPRG00000001634 #24
Tree shrew	MODERN SPECIES	5171															PSMB8 (ENSTBEG00000007794) #21	ENSTBEG00000007418 #22	ENSTBEG00000007262 #24
Primates	ANCESTRAL SPECIES	5	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000162892	ENSGT00940000154993 #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000162892	ENSGT00940000154993 #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00530000064839 #31	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37	ENSGT00940000162975	ENSGT00940000155779.a.b
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00530000064839 #31	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37	ENSGT00940000162975	ENSGT00940000155779.a.b
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.n #25	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a #25	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00530000064839 #31	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.n #25	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a #25	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00530000064839 #31	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36
Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.n #25	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a #25	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00530000064839 #31	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.n #25	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a #25	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.a #28	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00530000064839 #31	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36
Gorilla	MODERN SPECIES	19	RING1 (ENSGGOG00000009842) #11	HSD17B8 (ENSGGOG00000009838) #12	SLC39A7 (ENSGGOG00000009830) #13	RXRB (ENSGGOG00000009823) #14	COL11A2 (ENSGGOG00000009799) #15	HLA-DPB1 (ENSGGOG00000013630)	HLA-DPA1 (ENSGGOG00000013625)	HLA-DOA (ENSGGOG00000010653) #16	ENSGGOG00000005838	BRD2 (ENSGGOG00000043461) #17	ENSGGOG00000005835 #18	HLA-DMB (ENSGGOG00000022404)	PSMB9 (ENSGGOG00000010965) #19	TAP1 (ENSGGOG00000010958) #20	PSMB8 (ENSGGOG00000010953) #21	TAP2 (ENSGGOG00000010941) #22	HLA-DOB (ENSGGOG00000043194) #24	HLA-DQB2 (ENSGGOG00000014413) #25	ENSGGOG00000037744	HLA-DQB1 (ENSGGOG00000004252) #25	HLA-DQA1 (ENSGGOG00000013538)	ENSGGOG00000000700 #28	HLA-DRB5 (ENSGGOG00000037929) #28	HLA-DRA (ENSGGOG00000009861)	BTNL2 (ENSGGOG00000009855) #29	TSBP1 (ENSGGOG00000040681) #31	NOTCH4 (ENSGGOG00000002332)	GPSM3 (ENSGGOG00000002329) #34	PBX2 (ENSGGOG00000002325) #35	AGER (ENSGGOG00000002323) #36	RNF5 (ENSGGOG00000002320)
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.n #25	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a #25	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.a #28	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00530000064839 #31	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36
Pan	ANCESTRAL SPECIES	5	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.n #25	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a #25	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00530000064839 #31	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b.w
Chimpanzee	MODERN SPECIES	19	RING1 (ENSPTRG00000018037) #11	HSD17B8 (ENSPTRG00000018036) #12	SLC39A7 (ENSPTRG00000018035) #13	RXRB (ENSPTRG00000018034) #14	COL11A2 (ENSPTRG00000018033) #15	HLA-DPB1 (ENSPTRG00000018030)	HLA-DPA1 (ENSPTRG00000018029)	HLA-DOA (ENSPTRG00000018028) #16	ENSPTRG00000018027	BRD2 (ENSPTRG00000042676) #17	ENSPTRG00000018026 #18	PATR-DMB (ENSPTRG00000018025)	PSMB9 (ENSPTRG00000018024) #19	TAP1 (ENSPTRG00000018023) #20	PSMB8 (ENSPTRG00000018022) #21	TAP2 (ENSPTRG00000018021) #22	PATR-DOB (ENSPTRG00000018020) #24	HLA-DQB2 (ENSPTRG00000023404) #25	HLA-DQA2 (ENSPTRG00000034186)	HLA-DQB1 (ENSPTRG00000018018) #25	HLA-DQA1 (ENSPTRG00000018017)	PATR-DQB1 (ENSPTRG00000018001) #28	ENSPTRG00000051243 #28	PATR-DRB5 (ENSPTRG00000023735) #28	PATR-DRA (ENSPTRG00000018016)	BTNL2 (ENSPTRG00000043663) #29	ENSPTRG00000044399	TSBP1 (ENSPTRG00000018014) #31	NOTCH4 (ENSPTRG00000034379)	GPSM3 (ENSPTRG00000023968) #34	PBX2 (ENSPTRG00000018012) #35
Bonobo	MODERN SPECIES	19	HSD17B8 (ENSPPAG00000032286) #12	SLC39A7 (ENSPPAG00000028225) #13	RXRB (ENSPPAG00000038590) #14	COL11A2 (ENSPPAG00000013099) #15	HLA-DPB1 (ENSPPAG00000041449)	HLA-DPA1 (ENSPPAG00000031863)	HLA-DOA (ENSPPAG00000036361) #16	BRD2 (ENSPPAG00000016843) #17	ENSPPAG00000027710	HLA-DMA (ENSPPAG00000041639) #18	HLA-DMB (ENSPPAG00000037856)	ENSPPAG00000033020	PSMB9 (ENSPPAG00000038623) #19	TAP1 (ENSPPAG00000029436) #20	PSMB8 (ENSPPAG00000042377) #21	TAP2 (ENSPPAG00000033938) #22	HLA-DOB (ENSPPAG00000027428) #24	HLA-DQB2 (ENSPPAG00000041341) #25	HLA-DQA2 (ENSPPAG00000038014)	HLA-DQB1 (ENSPPAG00000041275) #25	ENSPPAG00000019881	ENSPPAG00000039594 #28	ENSPPAG00000036652 #28	ENSPPAG00000029790 #28	HLA-DRA (ENSPPAG00000041818)	ENSPPAG00000038384 #29	ENSPPAG00000034948 #31	NOTCH4 (ENSPPAG00000030396)	GPSM3 (ENSPPAG00000035669) #34	PBX2 (ENSPPAG00000039908) #35	AGER (ENSPPAG00000028489) #36
Human	MODERN SPECIES	18	RING1 (ENSG00000204227) #11	HSD17B8 (ENSG00000204228) #12	SLC39A7 (ENSG00000112473) #13	RXRB (ENSG00000204231) #14	COL11A2 (ENSG00000204248) #15	HLA-DPB1 (ENSG00000223865)	HLA-DPA1 (ENSG00000231389)	HLA-DOA (ENSG00000204252) #16	BRD2 (ENSG00000204256) #17	HLA-DMA (ENSG00000204257) #18	ENSG00000248993	HLA-DMB (ENSG00000242574)	TAP1 (ENSG00000168394) #20	PSMB9 (ENSG00000240065) #19	PSMB8 (ENSG00000204264) #21	TAP2 (ENSG00000204267) #22	ENSG00000250264	HLA-DOB (ENSG00000241106) #24	HLA-DQB2 (ENSG00000232629) #25	HLA-DQA2 (ENSG00000237541)	HLA-DQB1 (ENSG00000179344) #25	HLA-DQA1 (ENSG00000196735)	HLA-DRB1 (ENSG00000196126) #28	HLA-DRB5 (ENSG00000198502) #28	HLA-DRA (ENSG00000204287)	BTNL2 (ENSG00000204290) #29	TSBP1 (ENSG00000204296) #31	NOTCH4 (ENSG00000204301)	GPSM3 (ENSG00000213654) #34	PBX2 (ENSG00000204304) #35	AGER (ENSG00000204305) #36
Orangutan	MODERN SPECIES	19	RING1 (ENSPPYG00000017242) #11	HSD17B8 (ENSPPYG00000017241) #12	SLC39A7 (ENSPPYG00000017240) #13	RXRB (ENSPPYG00000017239) #14	COL11A2 (ENSPPYG00000017238) #15	HLA-DPA1 (ENSPPYG00000017229)	ENSPPYG00000029571	HLA-DOA (ENSPPYG00000016495) #16	BRD2 (ENSPPYG00000017228) #17	ENSPPYG00000031820	ENSPPYG00000017227 #18	HLA-DMB (ENSPPYG00000017226)	PSMB9 (ENSPPYG00000017225) #19	TAP1 (ENSPPYG00000017224) #20	PSMB8 (ENSPPYG00000017223) #21	TAP2 (ENSPPYG00000017222) #22	HLA-DOB (ENSPPYG00000017221) #24	HLA-DQB2 (ENSPPYG00000017220) #25	HLA-DQA2 (ENSPPYG00000017219)	ENSPPYG00000017216 #28	HLA-DRB1 (ENSPPYG00000016490) #28	HLA-DRA (ENSPPYG00000017234)	BTNL2 (ENSPPYG00000017215) #29	TSBP1 (ENSPPYG00000016489) #31	NOTCH4 (ENSPPYG00000016488)	GPSM3 (ENSPPYG00000016487) #34	PBX2 (ENSPPYG00000016486) #35	AGER (ENSPPYG00000016485) #36	RNF5 (ENSPPYG00000016484)	AGPAT1 (ENSPPYG00000016483) #37	EGFL8 (ENSPPYG00000041054)
Gibbon	MODERN SPECIES	10	HSD17B8 (ENSNLEG00000006824) #12	SLC39A7 (ENSNLEG00000006815) #13	RXRB (ENSNLEG00000006809) #14	ENSNLEG00000030023 #15	HLA-DPB1 (ENSNLEG00000006801)	HLA-DPA1 (ENSNLEG00000034417)	ENSNLEG00000031675 #16	BRD2 (ENSNLEG00000006782) #17	ENSNLEG00000032110	HLA-DMA (ENSNLEG00000006775) #18	HLA-DMB (ENSNLEG00000006770)	ENSNLEG00000032895	PSMB9 (ENSNLEG00000006757) #19	TAP1 (ENSNLEG00000006738) #20	PSMB8 (ENSNLEG00000006733) #21	TAP2 (ENSNLEG00000006714) #22	HLA-DOB (ENSNLEG00000027543) #24	HLA-DQB2 (ENSNLEG00000006713) #25	HLA-DQA2 (ENSNLEG00000027015)	HLA-DQB1 (ENSNLEG00000006693) #25	HLA-DQA1 (ENSNLEG00000032515)	ENSNLEG00000032832 #28	HLA-DRA (ENSNLEG00000006686)	BTNL2 (ENSNLEG00000006679) #29	ENSNLEG00000006667 #31	ENSNLEG00000006638	GPSM3 (ENSNLEG00000033153) #34	PBX2 (ENSNLEG00000006632) #35	AGER (ENSNLEG00000006604) #36	RNF5 (ENSNLEG00000027395)	AGPAT1 (ENSNLEG00000006594) #37
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.m.a #25	ENSGT00940000162892.a.a.b	ENSGT00940000154723.b.m.b #25	ENSGT00940000162892.a.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997	ENSGT00530000064839 #31	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b.qc.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.m.a #25	ENSGT00940000162892.a.a.b	ENSGT00940000154993.m.a.a.a #28	ENSGT00940000154723.b.m.b #25	ENSGT00940000162892.a.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.a.a.b.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000154993.m.a.a.b.b #28	ENSGT00940000160997	ENSGT00530000064839 #31	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b.qc.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.m.a #25	ENSGT00940000162892.a.a.b	ENSGT00940000154993.m.a.a.a #28	ENSGT00940000154723.b.m.b #25	ENSGT00940000162892.a.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b.a.b #28	ENSGT00940000154993.m.a.a.b.b #28	ENSGT00940000160997	ENSGT00530000064839 #31	ENSGT00950000183123.h.b	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35
Macaca	ANCESTRAL SPECIES	9	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498.k	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b.qc.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.m.a #25	ENSGT00940000162892.a.a.b	ENSGT00940000154993.m.a.a.a #28	ENSGT00940000154993.m.b.a.b #28	ENSGT00940000154993.m.a.a.b.b #28	ENSGT00940000160997	ENSGT00530000064839 #31	ENSGT00950000183123.h.b	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00390000012691.c.b.m.b #10	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160076 #13	ENSGT00940000160668 #12	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162498.k	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b.qc.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154993.m.a.b #28	ENSGT00940000160997	ENSGT00530000064839 #31	ENSGT00950000183123.h.b	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37	ENSGT00940000162975	ENSGT00940000155779.a.b	ENSGT00940000162382	ENSGT00920000149187
Crab-eating macaque	MODERN SPECIES	14	WDR46 (ENSMFAG00000000475) #8	B3GALT4 (ENSMFAG00000041942) #9	RPS18 (ENSMFAG00000032199) #10	COL11A2 (ENSMFAG00000017491) #15	RING1 (ENSMFAG00000002610) #11	SLC39A7 (ENSMFAG00000038848) #13	HSD17B8 (ENSMFAG00000037332) #12	RXRB (ENSMFAG00000003583) #14	HLA-DOA (ENSMFAG00000058905) #16	BRD2 (ENSMFAG00000037520) #17	ENSMFAG00000060572	HLA-DMA (ENSMFAG00000042109) #18	HLA-DMB (ENSMFAG00000004018)	PSMB9 (ENSMFAG00000038128) #19	TAP1 (ENSMFAG00000041369) #20	TAP2 (ENSMFAG00000037139) #22	HLA-DOB (ENSMFAG00000003652) #24	HLA-DQA1 (ENSMFAG00000002949)	ENSMFAG00000054107	HLA-DRB5 (ENSMFAG00000000676) #28	ENSMFAG00000058962 #28	HLA-DRA (ENSMFAG00000032157)	ENSMFAG00000033140 #31	ENSMFAG00000049929	ENSMFAG00000033054	RNF5 (ENSMFAG00000033282)	ENSMFAG00000059430 #33	GPSM3 (ENSMFAG00000044173) #34	PBX2 (ENSMFAG00000045367) #35	AGER (ENSMFAG00000038314) #36	AGPAT1 (ENSMFAG00000042426) #37
Rhesus	MODERN SPECIES	14	VPS52 (ENSMMUG00000003864)	ENSMMUG00000003867 #10	RING1 (ENSMMUG00000003863) #11	SLC39A7 (ENSMMUG00000003859) #13	HSD17B8 (ENSMMUG00000003861) #12	RXRB (ENSMMUG00000003858) #14	COL11A2 (ENSMMUG00000003850) #15	ENSMMUG00000019371	ENSMMUG00000041095	MAMU-DOA (ENSMMUG00000015734) #16	BRD2 (ENSMMUG00000023138) #17	MAMU-DMB (ENSMMUG00000022626)	ENSMMUG00000063291	PSMB9 (ENSMMUG00000011304) #19	PSMB8 (ENSMMUG00000011301) #20	MAMU-DOB (ENSMMUG00000011293) #22	ENSMMUG00000054826	MAMU-DRB1 (ENSMMUG00000029799) #28	MAMU-DRA (ENSMMUG00000039082)	TSBP1 (ENSMMUG00000018425) #31	ENSMMUG00000029402	NOTCH4 (ENSMMUG00000018461)	GPSM3 (ENSMMUG00000018459) #34	PBX2 (ENSMMUG00000018456) #35	AGER (ENSMMUG00000018442) #36	RNF5 (ENSMMUG00000018438)	AGPAT1 (ENSMMUG00000018434) #37	EGFL8 (ENSMMUG00000018432)	PRRT1 (ENSMMUG00000016647)	FKBPL (ENSMMUG00000015230)	ATF6B (ENSMMUG00000015229)
Pig-tailed macaque	MODERN SPECIES	528	RXRB (ENSMNEG00000034252) #14	COL11A2 (ENSMNEG00000022236) #15	ENSMNEG00000010287	HLA-DPB1 (ENSMNEG00000029725)	HLA-DPA1 (ENSMNEG00000040889)	HLA-DOA (ENSMNEG00000008508) #16	BRD2 (ENSMNEG00000030743) #17	ENSMNEG00000039758	HLA-DMA (ENSMNEG00000032904) #18	HLA-DMB (ENSMNEG00000044507)	ENSMNEG00000035658	ENSMNEG00000036723	PSMB9 (ENSMNEG00000038721) #19	TAP1 (ENSMNEG00000041518) #20	PSMB8 (ENSMNEG00000044942) #21	TAP2 (ENSMNEG00000041413) #22	HLA-DOB (ENSMNEG00000043598) #24	HLA-DQB1 (ENSMNEG00000027969) #25	HLA-DQA1 (ENSMNEG00000038603)	ENSMNEG00000044119 #28	ENSMNEG00000018617	ENSMNEG00000020869 #28
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498.m	ENSGT00940000162498.n	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b.qc.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353.h #24	ENSGT00940000154723.b.m.a #25	ENSGT00940000162892.a.a.b	ENSGT00940000155046.t	ENSGT00390000015391	ENSGT00940000153251.b.a	ENSGT00530000064866	ENSGT00390000013322	ENSGT00730000111474	ENSGT00390000010291	ENSGT00960000186815	ENSGT00940000164570	ENSGT00940000164618	ENSGT00390000016847	ENSGT00390000011767
Olive baboon	MODERN SPECIES	16	RING1 (ENSPANG00000023635) #11	HSD17B8 (ENSPANG00000023634) #12	SLC39A7 (ENSPANG00000023633) #13	RXRB (ENSPANG00000018527) #14	COL11A2 (ENSPANG00000009194) #15	HLA-DPB1 (ENSPANG00000005764)	HLA-DPA1 (ENSPANG00000018967)	HLA-DOA (ENSPANG00000031879) #16	BRD2 (ENSPANG00000019626) #17	ENSPANG00000035618	HLA-DMA (ENSPANG00000026492) #18	HLA-DMB (ENSPANG00000019593)	PSMB9 (ENSPANG00000033974) #19	TAP1 (ENSPANG00000024178) #20	PSMB8 (ENSPANG00000016588) #21	TAP2 (ENSPANG00000015103) #22	HLA-DOB (ENSPANG00000016388) #24	ENSPANG00000044498	ENSPANG00000007627	TCF19 (ENSPANG00000024035)	CCHCR1 (ENSPANG00000017010)	ENSPANG00000049186	PSORS1C2 (ENSPANG00000024487)	CDSN (ENSPANG00000047914)	C6orf15 (ENSPANG00000011097)	ENSPANG00000031147	ENSPANG00000009406	SFTA2 (ENSPANG00000030986)	VARS2 (ENSPANG00000018481)	GTF2H4 (ENSPANG00000026494)	DDR1 (ENSPANG00000024488)
Cercopithecinae_d	ANCESTRAL SPECIES	197					ENSGT00940000162390	ENSGT00940000162498.n	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b.qc.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353.h #24	ENSGT00940000154723.b.m.a #25	ENSGT00940000162892.a.a.b
Drill	MODERN SPECIES	1605						ENSMLEG00000035946	HLA-DOA (ENSMLEG00000037836) #16	ENSMLEG00000042296 #17	ENSMLEG00000035779	HLA-DMA (ENSMLEG00000039758) #18	HLA-DMB (ENSMLEG00000032921)	ENSMLEG00000033307	PSMB9 (ENSMLEG00000009919) #19	TAP1 (ENSMLEG00000042023) #20	PSMB8 (ENSMLEG00000028732) #21	TAP2 (ENSMLEG00000040111) #22	HLA-DOB (ENSMLEG00000044332) #24
Sooty mangabey	MODERN SPECIES	451					HLA-DPB1 (ENSCATG00000038170)	ENSCATG00000024393	HLA-DOA (ENSCATG00000035917) #16	ENSCATG00000034965 #17	ENSCATG00000037729	HLA-DMA (ENSCATG00000030669) #18	HLA-DMB (ENSCATG00000024024)	ENSCATG00000037243	PSMB9 (ENSCATG00000041856) #19	TAP1 (ENSCATG00000033980) #20	PSMB8 (ENSCATG00000024878) #21	TAP2 (ENSCATG00000038838) #22	ENSCATG00000036138 #24	HLA-DQB1 (ENSCATG00000030073) #25	HLA-DQA1 (ENSCATG00000012156)
Rhinopithecus	ANCESTRAL SPECIES	177							ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b.nc #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.n #25	ENSGT00940000154723.b.m.b #25	ENSGT00940000162892.a.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997	ENSGT00530000064839 #31	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37
Golden snub-nosed monkey	MODERN SPECIES	1416							HLA-DOA (ENSRROG00000000054) #16	ENSRROG00000012557 #17	ENSRROG00000034857	HLA-DMA (ENSRROG00000037828) #18	HLA-DMB (ENSRROG00000039771)	ENSRROG00000012955	PSMB9 (ENSRROG00000005028) #19	TAP1 (ENSRROG00000021353) #20	PSMB8 (ENSRROG00000019326) #21	TAP2 (ENSRROG00000033497) #22
Black snub-nosed monkey	MODERN SPECIES	1396							HLA-DOA (ENSRBIG00000041291) #16	ENSRBIG00000044329 #17	ENSRBIG00000033102	HLA-DMA (ENSRBIG00000027897) #18	HLA-DMB (ENSRBIG00000031730)	ENSRBIG00000031206	PSMB9 (ENSRBIG00000042419) #19	TAP1 (ENSRBIG00000038729) #20	PSMB8 (ENSRBIG00000032621) #21	TAP2 (ENSRBIG00000042752) #22	HLA-DOB (ENSRBIG00000039119) #24	ENSRBIG00000031872 #25	HLA-DQA1 (ENSRBIG00000031838)
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b.lc #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.l.b #25	ENSGT00940000162892.a.a.d	ENSGT00940000154723.b.l.a.b #25	ENSGT00940000162892.a.a.c	ENSGT00940000154993.n #28	ENSGT00940000154723.b.k #25	ENSGT00940000162892.a.b	ENSGT00940000154723.b.l.a.a #25	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00530000064839 #31	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35
Cebidae	ANCESTRAL SPECIES	5	ENSGT00940000161022.b #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b.lc #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.l.b #25	ENSGT00940000162892.a.a.d	ENSGT00940000154723.b.l.a.b #25	ENSGT00940000162892.a.a.c	ENSGT00940000154993.n.a #28
Cebidae_a	ANCESTRAL SPECIES	25	ENSGT00940000161022.b #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b.lc #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.l.b #25	ENSGT00940000162892.a.a.d	ENSGT00940000154723.b.l.a.b #25	ENSGT00940000162892.a.a.c	ENSGT00940000154993.n.a.b #28
Bolivian squirrel monkey	MODERN SPECIES	59	LRRC1 (ENSSBOG00000035746)	KLHL31 (ENSSBOG00000033630)	GCLC (ENSSBOG00000023419)	ELOVL5 (ENSSBOG00000034870)	ENSSBOG00000021942	GCM1 (ENSSBOG00000005634)	FBXO9 (ENSSBOG00000019141)	CILK1 (ENSSBOG00000017283)	GSTA4 (ENSSBOG00000020856)	ENSSBOG00000025505	GSTA5 (ENSSBOG00000023195)	TMEM14A (ENSSBOG00000022452)	PSMB9 (ENSSBOG00000022067) #19	TAP1 (ENSSBOG00000027226) #20	PSMB8 (ENSSBOG00000026986) #21	TAP2 (ENSSBOG00000021205) #22	HLA-DOB (ENSSBOG00000029243) #24	ENSSBOG00000012276 #25	ENSSBOG00000035334	ENSSBOG00000016392 #25	ENSSBOG00000021233	ENSSBOG00000031743 #28	ENSSBOG00000032160 #28
Capuchin	MODERN SPECIES	24	VPS52 (ENSCCAG00000029806)	RING1 (ENSCCAG00000020672) #11	HSD17B8 (ENSCCAG00000034063) #12	SLC39A7 (ENSCCAG00000021481) #13	RXRB (ENSCCAG00000015878) #14	COL11A2 (ENSCCAG00000021086) #15	HLA-DPB1 (ENSCCAG00000036491)	HLA-DPA1 (ENSCCAG00000035048)	HLA-DOA (ENSCCAG00000024211) #16	ENSCCAG00000016930 #17	HLA-DMA (ENSCCAG00000031122) #18	HLA-DMB (ENSCCAG00000030904)	PSMB9 (ENSCCAG00000036808) #19	TAP1 (ENSCCAG00000024218) #20	PSMB8 (ENSCCAG00000026335) #21	TAP2 (ENSCCAG00000035497) #22	HLA-DOB (ENSCCAG00000034021) #24	ENSCCAG00000028168 #25	ENSCCAG00000023824	ENSCCAG00000025088 #25	HLA-DQA2 (ENSCCAG00000023549)	HLA-DRB1 (ENSCCAG00000025004) #28	ENSCCAG00000024284 #28	ENSCCAG00000033580 #28	HLA-DRA (ENSCCAG00000027271)	BTNL2 (ENSCCAG00000037406) #29	TSBP1 (ENSCCAG00000034222) #31	ENSCCAG00000029507	GPSM3 (ENSCCAG00000026910) #34	NOTCH4 (ENSCCAG00000025076)	PBX2 (ENSCCAG00000034408) #35
Marmoset	MODERN SPECIES	16	B3GALT4 (ENSCJAG00000043225) #9	ENSCJAG00000021650 #10	VPS52 (ENSCJAG00000021644)	RING1 (ENSCJAG00000081691) #11	ENSCJAG00000021632 #12	SLC39A7 (ENSCJAG00000021622) #13	RXRB (ENSCJAG00000021619) #14	COL11A2 (ENSCJAG00000021577) #15	HLA-DPB1 (ENSCJAG00000021575)	HLA-DPA1 (ENSCJAG00000057301)	HLA-DOA (ENSCJAG00000021571) #16	ENSCJAG00000021566 #17	HLA-DMA (ENSCJAG00000021558) #18	PSMB9 (ENSCJAG00000021553) #19	TAP1 (ENSCJAG00000021552) #20	TAP2 (ENSCJAG00000021550) #22	HLA-DOB (ENSCJAG00000035217) #24	ENSCJAG00000045515	ENSCJAG00000021548 #25	ENSCJAG00000072040	ENSCJAG00000043141	ENSCJAG00000073641	ENSCJAG00000082318	ENSCJAG00000046350	ENSCJAG00000044447	ENSCJAG00000042232	ENSCJAG00000072632	ENSCJAG00000047812	ENSCJAG00000083244	ENSCJAG00000010588	ENSCJAG00000082116
Mas night monkey	MODERN SPECIES	1006				HLA-DPA1 (ENSANAG00000025586)	ENSANAG00000021916	ENSANAG00000020251	HLA-DOA (ENSANAG00000023738) #16	BRD2 (ENSANAG00000025054) #17	ENSANAG00000022510	HLA-DMA (ENSANAG00000024515) #18	HLA-DMB (ENSANAG00000031322)	ENSANAG00000029686	PSMB9 (ENSANAG00000018195) #19	TAP1 (ENSANAG00000025374) #20	PSMB8 (ENSANAG00000023214) #21	TAP2 (ENSANAG00000023266) #22	HLA-DQB2 (ENSANAG00000025105) #25	HLA-DQA2 (ENSANAG00000023973)	ENSANAG00000023444 #25	ENSANAG00000025439
Tarsier	MODERN SPECIES	6430											HLA-DMA (ENSTSYG00000013575) #18	HLA-DMB (ENSTSYG00000013568)	PSMB9 (ENSTSYG00000007747) #19	TAP1 (ENSTSYG00000007737) #20	PSMB8 (ENSTSYG00000007730) #21	TAP2 (ENSTSYG00000029149) #22	HLA-DOB (ENSTSYG00000007697) #24
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993 #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37	ENSGT00940000162975
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000162892	ENSGT00940000161821 #26	ENSGT00940000154993 #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37	ENSGT00940000162975
Mouse lemur	MODERN SPECIES	28	PFDN6 (ENSMICG00000000922) #7	RGL2 (ENSMICG00000000926)	TAPBP (ENSMICG00000042293)	DAXX (ENSMICG00000000933)	ENSMICG00000033163	KIFC1 (ENSMICG00000005648)	PHF1 (ENSMICG00000005660)	CUTA (ENSMICG00000005673)	SYNGAP1 (ENSMICG00000005678)	SFTA2 (ENSMICG00000030909)	ENSMICG00000035395	ENSMICG00000031166 #32	PSMB9 (ENSMICG00000015307) #19	TAP1 (ENSMICG00000015264) #20	PSMB8 (ENSMICG00000015254) #21	TAP2 (ENSMICG00000015245) #22	HLA-DOB (ENSMICG00000034483) #24	ENSMICG00000031829 #25	ENSMICG00000044751 #26	ENSMICG00000003714 #25	ENSMICG00000028538	ENSMICG00000036984 #28	ENSMICG00000035687	HLA-DRA (ENSMICG00000006228)	ENSMICG00000037923	TREML2 (ENSMICG00000027522)	ENSMICG00000041702	TREM2 (ENSMICG00000009719)	TREML1 (ENSMICG00000035283)	NFYA (ENSMICG00000009686)	ENSMICG00000038280
Lemuriformes_a	ANCESTRAL SPECIES	76						ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000162892	ENSGT00940000154993 #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000162079 #30	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37	ENSGT00940000162975	ENSGT00940000155779.a.b
Coquerels sifaka	MODERN SPECIES	872						HLA-DPA1 (ENSPCOG00000015236)	HLA-DOA (ENSPCOG00000014372) #16	ENSPCOG00000018880	ENSPCOG00000018456 #17	ENSPCOG00000016191	HLA-DMA (ENSPCOG00000022072) #18	HLA-DMB (ENSPCOG00000018934)	PSMB9 (ENSPCOG00000017686) #19	TAP1 (ENSPCOG00000019389) #20	PSMB8 (ENSPCOG00000028091) #21	TAP2 (ENSPCOG00000014799) #22	HLA-DOB (ENSPCOG00000022286) #24	HLA-DQB1 (ENSPCOG00000014494) #25
Greater bamboo lemur	MODERN SPECIES	650					ENSPSMG00000009792	HLA-DPB1 (ENSPSMG00000009639)	HLA-DPA1 (ENSPSMG00000009402)	HLA-DOA (ENSPSMG00000009261) #16	ENSPSMG00000009252	BRD2 (ENSPSMG00000009223) #17	HLA-DMA (ENSPSMG00000009171) #18	HLA-DMB (ENSPSMG00000009134)	PSMB9 (ENSPSMG00000009117) #19	TAP1 (ENSPSMG00000009102) #20	PSMB8 (ENSPSMG00000009083) #21	TAP2 (ENSPSMG00000008940) #22	HLA-DOB (ENSPSMG00000008851) #24	HLA-DQB1 (ENSPSMG00000008743) #25	ENSPSMG00000008349	ENSPSMG00000007912 #27	HLA-DRA (ENSPSMG00000007272)	ENSPSMG00000007226 #29	ENSPSMG00000007220 #30
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	146	B3GALT4 (ENSOGAG00000006228) #9	RPS18 (ENSOGAG00000006225) #10	VPS52 (ENSOGAG00000006222)	RING1 (ENSOGAG00000006220) #11	HSD17B8 (ENSOGAG00000006214) #12	SLC39A7 (ENSOGAG00000030006) #13	RXRB (ENSOGAG00000011689) #14	COL11A2 (ENSOGAG00000025975) #15	ENSOGAG00000034269	ENSOGAG00000016138	HLA-DPA1 (ENSOGAG00000006476)	HLA-DOA (ENSOGAG00000014685) #16	BRD2 (ENSOGAG00000006473) #17	HLA-DMA (ENSOGAG00000006029) #18	HLA-DMB (ENSOGAG00000032749)	ENSOGAG00000013823 #22	PSMB9 (ENSOGAG00000013846) #19	TAP1 (ENSOGAG00000013836) #20	PSMB8 (ENSOGAG00000013830) #21	ENSOGAG00000031343 #22	HLA-DQB1 (ENSOGAG00000005662) #25	ENSOGAG00000008401 #26	ENSOGAG00000030012	ENSOGAG00000009732 #28	HLA-DRA (ENSOGAG00000008398)	BTNL2 (ENSOGAG00000008396) #29	ENSOGAG00000025050 #30	ENSOGAG00000013069 #28	ENSOGAG00000025825 #32	NOTCH4 (ENSOGAG00000010193)	GPSM3 (ENSOGAG00000032276) #34
Bushbaby	MODERN SPECIES	146	HSD17B8 (ENSOGAG00000006214) #12	SLC39A7 (ENSOGAG00000030006) #13	RXRB (ENSOGAG00000011689) #14	COL11A2 (ENSOGAG00000025975) #15	ENSOGAG00000034269	ENSOGAG00000016138	HLA-DPA1 (ENSOGAG00000006476)	HLA-DOA (ENSOGAG00000014685) #16	BRD2 (ENSOGAG00000006473) #17	HLA-DMA (ENSOGAG00000006029) #18	HLA-DMB (ENSOGAG00000032749)	ENSOGAG00000013823 #22	PSMB9 (ENSOGAG00000013846) #19	TAP1 (ENSOGAG00000013836) #20	PSMB8 (ENSOGAG00000013830) #21	ENSOGAG00000031343 #22	HLA-DQB1 (ENSOGAG00000005662) #25	ENSOGAG00000008401 #26	ENSOGAG00000030012	ENSOGAG00000009732 #28	HLA-DRA (ENSOGAG00000008398)	BTNL2 (ENSOGAG00000008396) #29	ENSOGAG00000025050 #30	ENSOGAG00000013069 #28	ENSOGAG00000025825 #32	NOTCH4 (ENSOGAG00000010193)	GPSM3 (ENSOGAG00000032276) #34	PBX2 (ENSOGAG00000016303) #35	AGER (ENSOGAG00000030141) #36	RNF5 (ENSOGAG00000031466)	AGPAT1 (ENSOGAG00000010187) #37
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.d #26	ENSGT00940000155371.m.a #27	ENSGT00940000154993 #28	ENSGT00940000161821.c.a #26	ENSGT00940000155371.n #27	ENSGT00940000161847	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #31	ENSGT00940000162450 #32
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000160499 #22
Common shrew	MODERN SPECIES	6712																ENSSARG00000009645 #22
Hedgehog	MODERN SPECIES	12688																TAP2 (ENSEEUG00000011038) #22
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.d #26	ENSGT00940000155371.m.a #27	ENSGT00940000154993 #28	ENSGT00940000161821.c.a #26	ENSGT00940000155371.n #27	ENSGT00940000161847	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #31	ENSGT00940000162450 #32
Artiodactyla	ANCESTRAL SPECIES	15	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.d #26	ENSGT00940000155371.m.a.a #27	ENSGT00940000155371.m.a.b.b #27	ENSGT00940000154993 #28	ENSGT00940000155371.n #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34
Suina	ANCESTRAL SPECIES	17	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.d #26	ENSGT00940000155371.m.a.a #27	ENSGT00940000155371.n #27	ENSGT00940000154993 #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34
Pig	MODERN SPECIES	15	GFRAL (ENSSSCG00000001480)	HMGCLL1 (ENSSSCG00000001479)	BMP5 (ENSSSCG00000001478)	RING1 (ENSSSCG00000001477) #11	HSD17B8 (ENSSSCG00000001476) #12	SLC39A7 (ENSSSCG00000001475) #13	RXRB (ENSSSCG00000001474) #14	COL11A2 (ENSSSCG00000001473) #15	SLA-DOA (ENSSSCG00000001472) #16	BRD2 (ENSSSCG00000001471) #17	SLA-DMA (ENSSSCG00000001470) #18	SLA-DMB (ENSSSCG00000001469)	TAP1 (ENSSSCG00000025618) #20	PSMB9 (ENSSSCG00000001463) #19	PSMB8 (ENSSSCG00000026951) #21	TAP2 (ENSSSCG00000025593) #22	HLA-DOB (ENSSSCG00000001459) #24	ENSSSCG00000063263 #25	ENSSSCG00000001458 #27	ENSSSCG00000043413	SLA-DQB1 (ENSSSCG00000001457) #25	ENSSSCG00000001456 #26	ENSSSCG00000001455 #27	ENSSSCG00000061569 #27	ENSSSCG00000031336 #27	ENSSSCG00000061450 #27	HLA-DRA (ENSSSCG00000001453)	BTNL2 (ENSSSCG00000025071) #29	ENSSSCG00000027921 #30	ENSSSCG00000033414	ENSSSCG00000030874
Chacoan peccary	MODERN SPECIES	782	HCRTR2 (ENSCWAG00000012598)	GFRAL (ENSCWAG00000012676)	HMGCLL1 (ENSCWAG00000012792)	BMP5 (ENSCWAG00000013472)	RING1 (ENSCWAG00000013538) #11	HSD17B8 (ENSCWAG00000013599) #12	SLC39A7 (ENSCWAG00000013691) #13	COL11A2 (ENSCWAG00000013860) #15	HLA-DOA (ENSCWAG00000015899) #16	BRD2 (ENSCWAG00000015939) #17	HLA-DMA (ENSCWAG00000016104) #18	HLA-DMB (ENSCWAG00000016177)	PSMB9 (ENSCWAG00000016225) #19	TAP1 (ENSCWAG00000016313) #20	PSMB8 (ENSCWAG00000016617) #21	TAP2 (ENSCWAG00000016671) #22	ENSCWAG00000016717 #24	ENSCWAG00000016773 #24	HLA-DQB1 (ENSCWAG00000016835) #25	ENSCWAG00000016903 #26	ENSCWAG00000016932 #27	ENSCWAG00000016954 #28	HLA-DRA (ENSCWAG00000016997)	BTNL2 (ENSCWAG00000017038) #29	ENSCWAG00000017173	ENSCWAG00000017259 #30	ENSCWAG00000017301	ENSCWAG00000017332 #31	ENSCWAG00000017375 #32	NOTCH4 (ENSCWAG00000017439)	GPSM3 (ENSCWAG00000017614) #34
Artiodactyla_a	ANCESTRAL SPECIES	19	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.d #26	ENSGT00940000155371.m.a.a #27	ENSGT00940000154993 #28	ENSGT00940000155371.m.a.b.b #27	ENSGT00940000155371.m.b #27	ENSGT00940000155371.n #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287
Camelidae	ANCESTRAL SPECIES	13	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.jb #25	ENSGT00940000155371.m.b #27	ENSGT00940000154723.b.ib #25	ENSGT00940000161821.d #26	ENSGT00940000155371.m.a.a #27	ENSGT00940000155371.m.a.b.a #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34
Arabian camel	MODERN SPECIES	12	RXRB (ENSCDRG00005021632) #14	COL11A2 (ENSCDRG00005021542) #15	HLA-DPB1 (ENSCDRG00005021506)	HLA-DPA1 (ENSCDRG00005021505)	HLA-DOA (ENSCDRG00005021502) #16	BRD2 (ENSCDRG00005021496) #17	HLA-DMA (ENSCDRG00005021489) #18	HLA-DMB (ENSCDRG00005021484)	PSMB9 (ENSCDRG00005021480) #19	TAP1 (ENSCDRG00005021477) #20	PSMB8 (ENSCDRG00005021475) #21	HLA-DOB (ENSCDRG00005021474) #24	ENSCDRG00005021472 #25	ENSCDRG00005021469 #26	ENSCDRG00005021466 #27	TAP2 (ENSCDRG00005021460) #22	ENSCDRG00005021455 #25	ENSCDRG00005021452 #25	ENSCDRG00005021448 #26	ENSCDRG00005021439 #27	ENSCDRG00005021434 #27	HLA-DRA (ENSCDRG00005021429)	BTNL2 (ENSCDRG00005021424) #29	ENSCDRG00005021419	ENSCDRG00005021416 #30	ENSCDRG00005021411 #31	ENSCDRG00005021398 #32	NOTCH4 (ENSCDRG00005021381)	GPSM3 (ENSCDRG00005021372) #34	PBX2 (ENSCDRG00005021366) #35	AGER (ENSCDRG00005021314) #36
Alpaca	MODERN SPECIES	2777													PSMB9 (ENSVPAG00000012498) #19	ENSVPAG00000012497 #20	PSMB8 (ENSVPAG00000012496) #21	ENSVPAG00000012495 #22	ENSVPAG00000012493 #24
Artiodactyla_b	ANCESTRAL SPECIES	15	ENSGT00390000012691.c.b #10	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.c.b #26	ENSGT00940000155371.m.a.b.b #27	ENSGT00940000154993 #28	ENSGT00940000155371.m.a.a #27	ENSGT00940000161821.d #26	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b
Cetacea	ANCESTRAL SPECIES	7	ENSGT00390000012691.c.b #10	ENSGT00390000008815	ENSGT00940000161022.g #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318	ENSGT00940000155008.C	ENSGT00390000016954
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00390000012691.c.b #10	ENSGT00390000008815	ENSGT00940000161022.g #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318	ENSGT00940000155008.C	ENSGT00390000016954
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00390000012691.c.b #10	ENSGT00390000008815	ENSGT00940000161022.g #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318	ENSGT00940000153769.C	ENSGT00940000155008.C
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00390000008815	ENSGT00940000161022.g #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162112 #16	ENSGT00940000154732.q.b.a	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000153769.C	ENSGT00940000155008.C	ENSGT00390000016954
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00390000008815	ENSGT00940000161022.g #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162112 #16	ENSGT00940000154732.q.b.a	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318	ENSGT00940000155008.C	ENSGT00390000016954
Narwhal	MODERN SPECIES	310	VPS52 (ENSMMNG00015012607)	ENSMMNG00015012638 #11	HSD17B8 (ENSMMNG00015012658) #12	SLC39A7 (ENSMMNG00015012682) #13	RXRB (ENSMMNG00015012697) #14	COL11A2 (ENSMMNG00015012846) #15	ENSMMNG00015013117	HLA-DOA (ENSMMNG00015013123) #16	ENSMMNG00015013152	BRD2 (ENSMMNG00015013179) #17	HLA-DMA (ENSMMNG00015013256) #18	HLA-DMB (ENSMMNG00015013276)	PSMB9 (ENSMMNG00015013288) #19	TAP1 (ENSMMNG00015013311) #20	PSMB8 (ENSMMNG00015013325) #21	TAP2 (ENSMMNG00015013343) #22	HLA-DOB (ENSMMNG00015013519) #24	ENSMMNG00015013533 #27	GCLC (ENSMMNG00015013551)	KLHL31 (ENSMMNG00015013579)	LRRC1 (ENSMMNG00015013594)	MLIP (ENSMMNG00015013648)	ENSMMNG00015013701	TINAG (ENSMMNG00015013728)	FAM83B (ENSMMNG00015013752)	HCRTR2 (ENSMMNG00015013768)	GFRAL (ENSMMNG00015013778)	HMGCLL1 (ENSMMNG00015013822)	BMP5 (ENSMMNG00015013873)	COL21A1 (ENSMMNG00015013907)	DST (ENSMMNG00015014103)
Beluga whale	MODERN SPECIES	8	RPS18 (ENSDLEG00000009077) #10	VPS52 (ENSDLEG00000008948)	RING1 (ENSDLEG00000008919) #11	HSD17B8 (ENSDLEG00000008819) #12	SLC39A7 (ENSDLEG00000008789) #13	RXRB (ENSDLEG00000008760) #14	COL11A2 (ENSDLEG00000008562) #15	HLA-DOA (ENSDLEG00000008482) #16	ENSDLEG00000008322	BRD2 (ENSDLEG00000008248) #17	HLA-DMA (ENSDLEG00000008210) #18	HLA-DMB (ENSDLEG00000008166)	PSMB9 (ENSDLEG00000008143) #19	TAP1 (ENSDLEG00000021996) #20	PSMB8 (ENSDLEG00000021995) #21	TAP2 (ENSDLEG00000021994) #22	ENSDLEG00000021992 #27	GCLC (ENSDLEG00000021991)	KLHL31 (ENSDLEG00000021990)	ENSDLEG00000021989	LRRC1 (ENSDLEG00000021988)	MLIP (ENSDLEG00000021987)	ENSDLEG00000021986	TINAG (ENSDLEG00000021985)	FAM83B (ENSDLEG00000021984)	HCRTR2 (ENSDLEG00000021982)	GFRAL (ENSDLEG00000021981)	HMGCLL1 (ENSDLEG00000021980)	BMP5 (ENSDLEG00000021979)	ENSDLEG00000021977	DST (ENSDLEG00000021102)
Vaquita	MODERN SPECIES	2	VPS52 (ENSPSNG00000020483)	RING1 (ENSPSNG00000020433) #11	HSD17B8 (ENSPSNG00000020389) #12	SLC39A7 (ENSPSNG00000020344) #13	RXRB (ENSPSNG00000020305) #14	COL11A2 (ENSPSNG00000019010) #15	ENSPSNG00000018732	HLA-DOA (ENSPSNG00000018672) #16	ENSPSNG00000018620	BRD2 (ENSPSNG00000018549) #17	HLA-DMA (ENSPSNG00000018364) #18	HLA-DMB (ENSPSNG00000018284)	PSMB9 (ENSPSNG00000018232) #19	TAP1 (ENSPSNG00000018201) #20	PSMB8 (ENSPSNG00000018160) #21	TAP2 (ENSPSNG00000018051) #22	HLA-DOB (ENSPSNG00000017969) #24	ENSPSNG00000017762 #27	GCLC (ENSPSNG00000017555)	KLHL31 (ENSPSNG00000017492)	ENSPSNG00000017462	MLIP (ENSPSNG00000017046)	TINAG (ENSPSNG00000016830)	FAM83B (ENSPSNG00000016755)	HCRTR2 (ENSPSNG00000016655)	GFRAL (ENSPSNG00000016509)	HMGCLL1 (ENSPSNG00000016099)	BMP5 (ENSPSNG00000015931)	ENSPSNG00000015738	DST (ENSPSNG00000015242)	BEND6 (ENSPSNG00000014810)
Dolphin	MODERN SPECIES	2738	WDR46 (ENSTTRG00000004304) #8	RPS18 (ENSTTRG00000004302) #10	VPS52 (ENSTTRG00000004298)	RING1 (ENSTTRG00000004296) #11	HSD17B8 (ENSTTRG00000004294) #12	SLC39A7 (ENSTTRG00000004293) #13	RXRB (ENSTTRG00000004291) #14	COL11A2 (ENSTTRG00000004283) #15	HLA-DOA (ENSTTRG00000004282) #16	BRD2 (ENSTTRG00000004278) #17	HLA-DMA (ENSTTRG00000004277) #18	HLA-DMB (ENSTTRG00000004276)	PSMB9 (ENSTTRG00000004272) #19	TAP1 (ENSTTRG00000004264) #20	PSMB8 (ENSTTRG00000004259) #21	TAP2 (ENSTTRG00000004254) #22	HLA-DOB (ENSTTRG00000004249) #24
Sperm whale	MODERN SPECIES	9	CUTA (ENSPCTG00005012115)	PHF1 (ENSPCTG00005012052)	KIFC1 (ENSPCTG00005012002)	ENSPCTG00005011963	RING1 (ENSPCTG00005011923) #11	HSD17B8 (ENSPCTG00005011876) #12	SLC39A7 (ENSPCTG00005011775) #13	RXRB (ENSPCTG00005011572) #14	COL11A2 (ENSPCTG00005009478) #15	HLA-DOA (ENSPCTG00005009319) #16	ENSPCTG00005009114 #17	HLA-DMB (ENSPCTG00005009080)	PSMB9 (ENSPCTG00005008969) #19	TAP1 (ENSPCTG00005021480) #20	PSMB8 (ENSPCTG00005021456) #21	TAP2 (ENSPCTG00005021415) #22	HLA-DOB (ENSPCTG00005021383) #24	ENSPCTG00005021294	GCLC (ENSPCTG00005021190)	KLHL31 (ENSPCTG00005021169)	LRRC1 (ENSPCTG00005021134)	MLIP (ENSPCTG00005020921)	TINAG (ENSPCTG00005020766)	FAM83B (ENSPCTG00005020744)	HCRTR2 (ENSPCTG00005020624)	GFRAL (ENSPCTG00005020543)	HMGCLL1 (ENSPCTG00005020290)	BMP5 (ENSPCTG00005020211)	COL21A1 (ENSPCTG00005020038)	DST (ENSPCTG00005015073)	BEND6 (ENSPCTG00005014566)
Blue whale	MODERN SPECIES	2	RPS18 (ENSBMSG00010010743) #10	VPS52 (ENSBMSG00010010756)	ENSBMSG00010010769 #11	HSD17B8 (ENSBMSG00010010786) #12	SLC39A7 (ENSBMSG00010010802) #13	RXRB (ENSBMSG00010010818) #14	COL11A2 (ENSBMSG00010010982) #15	ENSBMSG00010011366	HLA-DOA (ENSBMSG00010011380) #16	BRD2 (ENSBMSG00010011399) #17	HLA-DMA (ENSBMSG00010011432) #18	HLA-DMB (ENSBMSG00010011446)	PSMB9 (ENSBMSG00010011462) #19	TAP1 (ENSBMSG00010011477) #20	PSMB8 (ENSBMSG00010011493) #21	TAP2 (ENSBMSG00010011505) #22	HLA-DOB (ENSBMSG00010011526) #24	ENSBMSG00010011564 #27	GCLC (ENSBMSG00010011645)	KLHL31 (ENSBMSG00010011739)	LRRC1 (ENSBMSG00010011758)	MLIP (ENSBMSG00010011840)	TINAG (ENSBMSG00010011903)	FAM83B (ENSBMSG00010011937)	HCRTR2 (ENSBMSG00010011945)	GFRAL (ENSBMSG00010011956)	HMGCLL1 (ENSBMSG00010011994)	BMP5 (ENSBMSG00010012051)	ENSBMSG00010012065	ENSBMSG00010012074	ENSBMSG00010012133
Pecora	ANCESTRAL SPECIES	21	ENSGT00940000161798 #9	ENSGT00390000012691.c.b #10	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.c.b #26	ENSGT00940000155371.m.a.a #27	ENSGT00940000154993 #28	ENSGT00940000155371.m.a.b.b #27	ENSGT00940000155371.m.a.b.a #27	ENSGT00940000161821.d #26	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889
Percora_a	ANCESTRAL SPECIES	12	ENSGT00940000161798 #9	ENSGT00390000012691.c.b #10	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.d.f #26	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Bovidae	ANCESTRAL SPECIES	13	ENSGT00940000161798 #9	ENSGT00390000012691.c.b #10	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.nb #25	ENSGT00940000161821.d.f #26	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Caprinae	ANCESTRAL SPECIES	16	ENSGT00940000161798 #9	ENSGT00390000012691.c.b #10	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.nb #25	ENSGT00940000161821.d.f #26	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Goat	MODERN SPECIES	15	B3GALT4 (ENSCHIG00000013295) #9	RPS18 (ENSCHIG00000025263) ##10	VPS52 (ENSCHIG00000023524)	RING1 (ENSCHIG00000015685) #11	HSD17B8 (ENSCHIG00000017839) #12	SLC39A7 (ENSCHIG00000024209) #13	RXRB (ENSCHIG00000010266) #14	COL11A2 (ENSCHIG00000012269) #15	HLA-DOA (ENSCHIG00000014302) #16	BRD2 (ENSCHIG00000013946) #17	HLA-DMA (ENSCHIG00000009464) #18	HLA-DMB (ENSCHIG00000026519)	PSMB9 (ENSCHIG00000021513) #19	TAP1 (ENSCHIG00000021983) #20	PSMB8 (ENSCHIG00000012829) #21	TAP2 (ENSCHIG00000017732) #22	ENSCHIG00000019853	HLA-DOB (ENSCHIG00000010527) #24	ENSCHIG00000013102 #25	ENSCHIG00000022158 #26	ENSCHIG00000009662 #27	GCLC (ENSCHIG00000013397)	KLHL31 (ENSCHIG00000003573)	LRRC1 (ENSCHIG00000021002)	ENSCHIG00000020109	TINAG (ENSCHIG00000010892)	FAM83B (ENSCHIG00000019707)	HCRTR2 (ENSCHIG00000000459)	GFRAL (ENSCHIG00000008200)	HMGCLL1 (ENSCHIG00000017734)	BMP5 (ENSCHIG00000010429)
Rambouillet Sheep	MODERN SPECIES	12	B3GALT4 (ENSOARG00020012594) #9	RPS18 (ENSOARG00020012536) #10	VPS52 (ENSOARG00020012385)	RING1 (ENSOARG00020012299) #11	HSD17B8 (ENSOARG00020012212) #12	SLC39A7 (ENSOARG00020012152) #13	RXRB (ENSOARG00020011980) #14	COL11A2 (ENSOARG00020011636) #15	HLA-DOA (ENSOARG00020011582) #16	BRD2 (ENSOARG00020011534) #17	HLA-DMA (ENSOARG00020025286) #18	HLA-DMB (ENSOARG00020025272)	ENSOARG00020025249 #19	TAP1 (ENSOARG00020025187) #20	PSMB8 (ENSOARG00020025156) #21	TAP2 (ENSOARG00020025129) #22	HLA-DOB (ENSOARG00020025120) #24	ENSOARG00020025111 #25	ENSOARG00020025100	DYA (ENSOARG00020025089) #26	ENSOARG00020025077 #25	ENSOARG00020025038 #26	ENSOARG00020025022 #26	ENSOARG00020025012 #27	GCLC (ENSOARG00020024970)	KLHL31 (ENSOARG00020024949)	LRRC1 (ENSOARG00020024930)	TINAG (ENSOARG00020024710)	ENSOARG00020024682	ENSOARG00020024669	FAM83B (ENSOARG00020024658)
Bovinae	ANCESTRAL SPECIES	9	ENSGT00390000012691.c.b #10	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.nb.d #25	ENSGT00940000161821.d.f #26	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Bos	ANCESTRAL SPECIES	17	ENSGT00390000012691.d ##10	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.nb.d #25	ENSGT00940000161821.d.f #26	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Bos_a	ANCESTRAL SPECIES	11	ENSGT00390000012691.c.b #10	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.nb.d #25	ENSGT00940000161821.d.f #26	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Wild yak	MODERN SPECIES	401	ENSBMUG00000008818 #10	VPS52 (ENSBMUG00000008802)	RING1 (ENSBMUG00000008786) #11	HSD17B8 (ENSBMUG00000008752) #12	SLC39A7 (ENSBMUG00000008706) #13	RXRB (ENSBMUG00000008461) #14	COL11A2 (ENSBMUG00000008342) #15	HLA-DOA (ENSBMUG00000008090) #16	BRD2 (ENSBMUG00000008066) #17	HLA-DMA (ENSBMUG00000008047) #18	HLA-DMB (ENSBMUG00000008003)	ENSBMUG00000007993	PSMB9 (ENSBMUG00000007982) #19	TAP1 (ENSBMUG00000007967) #20	PSMB8 (ENSBMUG00000007942) #21	TAP2 (ENSBMUG00000007931) #22	HLA-DOB (ENSBMUG00000007908) #24	ENSBMUG00000007890 #25	ENSBMUG00000007873 #26	ENSBMUG00000006036 #27	GCLC (ENSBMUG00000005430)	KLHL31 (ENSBMUG00000005354)	LRRC1 (ENSBMUG00000005342)
Domestic yak	MODERN SPECIES	16	WDR46 (ENSBGRG00000017950) #8	B3GALT4 (ENSBGRG00000018285) #9	VPS52 (ENSBGRG00000018459)	RING1 (ENSBGRG00000018754) #11	HSD17B8 (ENSBGRG00000018839) #12	SLC39A7 (ENSBGRG00000018980) #13	RXRB (ENSBGRG00000019018) #14	COL11A2 (ENSBGRG00000019137) #15	HLA-DOA (ENSBGRG00000021588) #16	BRD2 (ENSBGRG00000021629) #17	HLA-DMA (ENSBGRG00000021851) #18	HLA-DMB (ENSBGRG00000021922)	ENSBGRG00000021991 #19	TAP1 (ENSBGRG00000022060) #20	PSMB8 (ENSBGRG00000022108) #21	TAP2 (ENSBGRG00000022189) #22	HLA-DOB (ENSBGRG00000022347) #24	ENSBGRG00000022408 #25	ENSBGRG00000022452 #26	ENSBGRG00000022508 #27	ENSBGRG00000022571	GCLC (ENSBGRG00000022619)	KLHL31 (ENSBGRG00000023447)	LRRC1 (ENSBGRG00000023507)	MLIP (ENSBGRG00000023693)	ENSBGRG00000024111	TINAG (ENSBGRG00000024130)	FAM83B (ENSBGRG00000024257)	HCRTR2 (ENSBGRG00000024278)	GFRAL (ENSBGRG00000024326)	HMGCLL1 (ENSBGRG00000024393)
Bos_b	ANCESTRAL SPECIES	8	ENSGT00390000012691.d ##10	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b.nb.d #25	ENSGT00940000161821.d.f #26	ENSGT00940000155371.m.b #27	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Cow	MODERN SPECIES	15	RPS18 (ENSBTAG00000002648) ##10	VPS52 (ENSBTAG00000002643)	RING1 (ENSBTAG00000018884) #11	HSD17B8 (ENSBTAG00000020927) #12	SLC39A7 (ENSBTAG00000008191) #13	RXRB (ENSBTAG00000000602) #14	COL11A2 (ENSBTAG00000000601) #15	BOLA-DOA (ENSBTAG00000006490) #16	BRD2 (ENSBTAG00000011074) #17	BOLA-DMA (ENSBTAG00000015730) #18	BOLA-DMB (ENSBTAG00000012451)	H2B (ENSBTAG00000051545)	PSMB9 (ENSBTAG00000008954) #19	TAP1 (ENSBTAG00000008953) #20	PSMB8 (ENSBTAG00000003039) #21	TAP2 (ENSBTAG00000003038) #22	BOLA-DOB (ENSBTAG00000047707) #24	BOLA-DYB (ENSBTAG00000045923) #25	BOLA-DYA (ENSBTAG00000002581) #26	DSB (ENSBTAG00000050757) #27	GCLC (ENSBTAG00000015571)	KLHL31 (ENSBTAG00000018167)	LRRC1 (ENSBTAG00000017533)	MLIP (ENSBTAG00000014581)	TINAG (ENSBTAG00000012652)	FAM83B (ENSBTAG00000016058)	HCRTR2 (ENSBTAG00000011719)	GFRAL (ENSBTAG00000012973)	HMGCLL1 (ENSBTAG00000025718)	BMP5 (ENSBTAG00000012870)	ENSBTAG00000046193
Hybrid Bos Indicus	MODERN SPECIES	15	RPS18 (ENSBIXG00005006736) ##10	VPS52 (ENSBIXG00005014413)	RING1 (ENSBIXG00005006128) #11	HSD17B8 (ENSBIXG00005001937) #12	SLC39A7 (ENSBIXG00005014473) #13	RXRB (ENSBIXG00005014520) #14	COL11A2 (ENSBIXG00005014598) #15	HLA-DOA (ENSBIXG00005014640) #16	BRD2 (ENSBIXG00005014704) #17	HLA-DMA (ENSBIXG00005014743) #18	HLA-DMB (ENSBIXG00005014762)	ENSBIXG00005014770	PSMB9 (ENSBIXG00005014787) #19	TAP1 (ENSBIXG00005014801) #20	PSMB8 (ENSBIXG00005014824) #21	TAP2 (ENSBIXG00005014872) #22	HLA-DOB (ENSBIXG00005014905) #24	ENSBIXG00005007128 #25	ENSBIXG00005014931 #26	ENSBIXG00005014945 #27	GCLC (ENSBIXG00005015026)	KLHL31 (ENSBIXG00005007502)	LRRC1 (ENSBIXG00005002222)	ENSBIXG00005015134	MLIP (ENSBIXG00005015301)	TINAG (ENSBIXG00005015398)	FAM83B (ENSBIXG00005015427)	HCRTR2 (ENSBIXG00005002278)	GFRAL (ENSBIXG00005006745)	HMGCLL1 (ENSBIXG00005015587)	BMP5 (ENSBIXG00005015628)
American bison	MODERN SPECIES	3186	RPS18 (ENSBBBG00000003625) #10	VPS52 (ENSBBBG00000003598)	RING1 (ENSBBBG00000003692) #11	HSD17B8 (ENSBBBG00000003696) #12	SLC39A7 (ENSBBBG00000014969) #13	RXRB (ENSBBBG00000015089) #14	ENSBBBG00000003746 #15	HLA-DOA (ENSBBBG00000015112) #16	BRD2 (ENSBBBG00000002785) #17	HLA-DMA (ENSBBBG00000015169) #18	HLA-DMB (ENSBBBG00000008914)	ENSBBBG00000015200	PSMB9 (ENSBBBG00000003777) #19	TAP1 (ENSBBBG00000015234) #20	PSMB8 (ENSBBBG00000015244) #21	TAP2 (ENSBBBG00000015257) #22	HLA-DOB (ENSBBBG00000015275) #24	ENSBBBG00000015280 #25	ENSBBBG00000015297 #26	ENSBBBG00000015836 #27	GCLC (ENSBBBG00000015998)	KLHL31 (ENSBBBG00000002569)	LRRC1 (ENSBBBG00000016027)	MLIP (ENSBBBG00000016140)	TINAG (ENSBBBG00000016191)	FAM83B (ENSBBBG00000016205)	HCRTR2 (ENSBBBG00000009059)	GFRAL (ENSBBBG00000016261)	HMGCLL1 (ENSBBBG00000016300)	BMP5 (ENSBBBG00000016316)	COL21A1 (ENSBBBG00000016434)
Yarkand deer	MODERN SPECIES	30	RGL2 (ENSCHYG00000004896)	PFDN6 (ENSCHYG00000004871) #7	WDR46 (ENSCHYG00000004759) #8	B3GALT4 (ENSCHYG00000004743) #9	RPS18 (ENSCHYG00000004733) #10	VPS52 (ENSCHYG00000004695)	RING1 (ENSCHYG00000004682) #11	COL11A2 (ENSCHYG00000004624) #15	HLA-DOA (ENSCHYG00000004561) #16	BRD2 (ENSCHYG00000004539) #17	HLA-DMA (ENSCHYG00000004520) #18	HLA-DMB (ENSCHYG00000004514)	ENSCHYG00000004500 #19	TAP1 (ENSCHYG00000004483) #20	PSMB8 (ENSCHYG00000004467) #21	TAP2 (ENSCHYG00000004426) #22	HLA-DOB (ENSCHYG00000004391) #24	ENSCHYG00000004368 #25	ENSCHYG00000004358 #26	ENSCHYG00000004336 #27	GCLC (ENSCHYG00000004293)	KLHL31 (ENSCHYG00000004258)	LRRC1 (ENSCHYG00000004239)	TINAG (ENSCHYG00000004199)	MLIP (ENSCHYG00000004113)	FAM83B (ENSCHYG00000004082)	HCRTR2 (ENSCHYG00000004073)	GFRAL (ENSCHYG00000004059)	ENSCHYG00000003978	BMP5 (ENSCHYG00000003939)	COL21A1 (ENSCHYG00000003914)
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000161821.c.a #26	ENSGT00940000155371.n #27	ENSGT00940000160997	ENSGT00940000154993 #28	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37	ENSGT00940000162975	ENSGT00940000155779.a.b	ENSGT00940000162382	ENSGT00920000149187	ENSGT00940000160798	ENSGT00940000155565	ENSGT00940000158338
Carnivora	ANCESTRAL SPECIES	4	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.c.a #26	ENSGT00940000155371.n #27	ENSGT00940000154993 #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35
Caniformia	ANCESTRAL SPECIES	3	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.c.a #26	ENSGT00940000155371.n #27	ENSGT00940000161847	ENSGT00940000154993 #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #31	ENSGT00940000162450.p #32	ENSGT00940000163287	ENSGT00390000002471 #34
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.c.a #26	ENSGT00940000154993 #28	ENSGT00940000160997	ENSGT00940000155371.n #27	ENSGT00940000161847	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #31	ENSGT00940000162450.p #32	ENSGT00940000163287	ENSGT00390000002471 #34
Ursidae	ANCESTRAL SPECIES	37	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00950000183198.c.a.b.b.j	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.c.a #26	ENSGT00940000155371.n #27	ENSGT00940000161847	ENSGT00940000160997	ENSGT00940000162484.d #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #31	ENSGT00940000162450.p.a #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35
Ursus	ANCESTRAL SPECIES	53	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00950000183198.c.a.b.b.j	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.c.a #26	ENSGT00940000155371.n #27	ENSGT00940000160997	ENSGT00940000162484.d #29
Polar bear	MODERN SPECIES	184	RING1 (ENSUMAG00000012543) #11	HSD17B8 (ENSUMAG00000012548) #12	SLC39A7 (ENSUMAG00000012560) #13	RXRB (ENSUMAG00000012569) #14	ENSUMAG00000012592 #15	ENSUMAG00000012616	HLA-DOA (ENSUMAG00000012626) #16	ENSUMAG00000012634 #17	ENSUMAG00000012662 #17	HLA-DMA (ENSUMAG00000012683) #18	HLA-DMB (ENSUMAG00000012688)	ENSUMAG00000012692	PSMB9 (ENSUMAG00000012694) #19	TAP1 (ENSUMAG00000012701) #20	PSMB8 (ENSUMAG00000012731) #21	TAP2 (ENSUMAG00000012745) #22	HLA-DOB (ENSUMAG00000012747) #24	ENSUMAG00000012755 #27	ENSUMAG00000012761	HLA-DQB2 (ENSUMAG00000012766) #25	ENSUMAG00000012768 #26	ENSUMAG00000012771 #27	HLA-DRA (ENSUMAG00000012775)	ENSUMAG00000012781 #29
American black bear	MODERN SPECIES	3108													PSMB9 (ENSUAMG00000013935) #19	TAP1 (ENSUAMG00000013932) #20	PSMB8 (ENSUAMG00000013929) #21	TAP2 (ENSUAMG00000013187) #22	HLA-DOB (ENSUAMG00000013172) #24	ENSUAMG00000013161 #25
Giant Panda	MODERN SPECIES	15	VPS52 (ENSAMEG00000001640)	RING1 (ENSAMEG00000001680) #11	HSD17B8 (ENSAMEG00000001698) #12	SLC39A7 (ENSAMEG00000001707) #13	RXRB (ENSAMEG00000001719) #14	COL11A2 (ENSAMEG00000001744) #15	ENSAMEG00000001900	HLA-DPA1 (ENSAMEG00000001901)	HLA-DOA (ENSAMEG00000001908) #16	BRD2 (ENSAMEG00000001926) #17	HLA-DMB (ENSAMEG00000001952)	ENSAMEG00000027435	PSMB9 (ENSAMEG00000001961) #19	TAP1 (ENSAMEG00000001976) #20	PSMB8 (ENSAMEG00000002026) #21	TAP2 (ENSAMEG00000002044) #22	HLA-DOB (ENSAMEG00000029901) #24	ENSAMEG00000026802 #25	ENSAMEG00000024677	ENSAMEG00000002342 #27	HLA-DRA (ENSAMEG00000002390)	BTNL2 (ENSAMEG00000002403) #29	ENSAMEG00000002462	ENSAMEG00000002434 #30	ENSAMEG00000024700 #31	ENSAMEG00000002606 #32	NOTCH4 (ENSAMEG00000002549)	GPSM3 (ENSAMEG00000002539) #34	PBX2 (ENSAMEG00000002519) #35	AGER (ENSAMEG00000002492) #36	RNF5 (ENSAMEG00000002477)
Mustelinae	ANCESTRAL SPECIES	65	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24
American mink	MODERN SPECIES	609			HSD17B8 (ENSNVIG00000006535) #12	SLC39A7 (ENSNVIG00000006519) #13	RXRB (ENSNVIG00000006480) #14	COL11A2 (ENSNVIG00000006062) #15	ENSNVIG00000004899	HLA-DPA1 (ENSNVIG00000004863)	HLA-DOA (ENSNVIG00000004843) #16	BRD2 (ENSNVIG00000004773) #17	HLA-DMA (ENSNVIG00000004747) #18	HLA-DMB (ENSNVIG00000004727)	PSMB9 (ENSNVIG00000004695) #19	TAP1 (ENSNVIG00000004678) #20	PSMB8 (ENSNVIG00000004658) #21	TAP2 (ENSNVIG00000004605) #22	HLA-DOB (ENSNVIG00000004582) #24
Ferret	MODERN SPECIES	318	RING1 (ENSMPUG00000002279) #11	SLC39A7 (ENSMPUG00000002276) #13	RXRB (ENSMPUG00000002273) #14	COL11A2 (ENSMPUG00000001968) #15	ENSMPUG00000001964	HLA-DPA1 (ENSMPUG00000001961)	ENSMPUG00000001959	HLA-DOA (ENSMPUG00000001958) #16	BRD2 (ENSMPUG00000001955) #17	ENSMPUG00000001954	HLA-DMA (ENSMPUG00000001944) #18	HLA-DMB (ENSMPUG00000001943)	PSMB9 (ENSMPUG00000001940) #19	TAP1 (ENSMPUG00000001935) #20	PSMB8 (ENSMPUG00000001933) #21	ENSMPUG00000001931 #22	ENSMPUG00000001924 #24
Canidae	ANCESTRAL SPECIES	6	ENSGT00390000008815.g.b	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.c.a #26	ENSGT00940000155371.n #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00940000162450.p #32	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37	ENSGT00940000162975
Canis_lupus	ANCESTRAL SPECIES	11	ENSGT00390000012691.c.b #10	ENSGT00390000008815.g.b	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821.c.a #26	ENSGT00940000155371.n #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00940000162450.o #32	ENSGT00940000162450.p #32	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37
Dog	MODERN SPECIES	3	B3GALT4 (ENSCAFG00845020962) #9	RPS18 (ENSCAFG00845020845) ##10	VPS52 (ENSCAFG00845020730)	RING1 (ENSCAFG00845020668) #11	HSD17B8 (ENSCAFG00845020603) #12	SLC39A7 (ENSCAFG00845020536) #13	RXRB (ENSCAFG00845020447) #14	COL11A2 (ENSCAFG00845019587) #15	ENSCAFG00845019114	DLA-DOA (ENSCAFG00845018933) #16	BRD2 (ENSCAFG00845018726) #17	DLA-DMA (ENSCAFG00845018613) #18	DLA-DMB (ENSCAFG00845018536)	PSMB9 (ENSCAFG00845018485) #19	PSMB8 (ENSCAFG00845018353) #20	TAP2 (ENSCAFG00845017879) #22	HLA-DQB2 (ENSCAFG00845017781) #25	DLA-DQA1 (ENSCAFG00845017728) #26	DLA-DRA (ENSCAFG00845017467)	ENSCAFG00845017367	BTNL2 (ENSCAFG00845017222) #29	ENSCAFG00845017104	ENSCAFG00845016990 #30	ENSCAFG00845016861	ENSCAFG00845016831	ENSCAFG00845016762 #32	ENSCAFG00845016724 #32	GPSM3 (ENSCAFG00845016471) #34	PBX2 (ENSCAFG00845016393) #35	AGER (ENSCAFG00845014982) #36	RNF5 (ENSCAFG00845014858)
Dingo	MODERN SPECIES	276	ENSCAFG00020003224	RING1 (ENSCAFG00020003221) #11	HSD17B8 (ENSCAFG00020003175) #12	SLC39A7 (ENSCAFG00020003166) #13	RXRB (ENSCAFG00020003098) #14	ENSCAFG00020003093 #15	ENSCAFG00020003072 #15	ENSCAFG00020002592	HLA-DOA (ENSCAFG00020002545) #16	BRD2 (ENSCAFG00020002542) #17	HLA-DMA (ENSCAFG00020002536) #18	HLA-DMB (ENSCAFG00020002532)	PSMB9 (ENSCAFG00020002528) #19	TAP1 (ENSCAFG00020002523) #20	PSMB8 (ENSCAFG00020002521) #21	TAP2 (ENSCAFG00020001827) #22	HLA-DOB (ENSCAFG00020001693) #24	ENSCAFG00020001685 #25	HLA-DQB1 (ENSCAFG00020001679) #25	ENSCAFG00020001673 #26	ENSCAFG00020001671 #27	HLA-DRA (ENSCAFG00020001663)	ENSCAFG00020001656	BTNL2 (ENSCAFG00020001628) #29	ENSCAFG00020001614	ENSCAFG00020001606 #30	ENSCAFG00020001600	ENSCAFG00020001586	ENSCAFG00020001581 #32	ENSCAFG00020001552 #32	GPSM3 (ENSCAFG00020001306) #34
Red fox	MODERN SPECIES	7	RPS18 (ENSVVUG00000025443) #10	ENSVVUG00000025286	RING1 (ENSVVUG00000025271) #11	HSD17B8 (ENSVVUG00000025268) #12	SLC39A7 (ENSVVUG00000025265) #13	RXRB (ENSVVUG00000025262) #14	ENSVVUG00000025174	HLA-DPA1 (ENSVVUG00000025137)	HLA-DOA (ENSVVUG00000025133) #16	BRD2 (ENSVVUG00000025130) #17	HLA-DMA (ENSVVUG00000025127) #18	HLA-DMB (ENSVVUG00000025122)	PSMB9 (ENSVVUG00000025119) #19	TAP1 (ENSVVUG00000025116) #20	PSMB8 (ENSVVUG00000025115) #21	TAP2 (ENSVVUG00000025111) #22	HLA-DOB (ENSVVUG00000025078) #24	ENSVVUG00000025071 #25
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762.cc #15	ENSGT00940000162390.q	ENSGT00940000162390.p	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000155371.n.a.b #27	ENSGT00940000155371.n.a.a #27	ENSGT00940000154993 #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450.q #32	ENSGT00940000163287.b	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762.cc #15	ENSGT00940000162390.p	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000155371.n.a.b #27	ENSGT00940000155371.n.a.a #27	ENSGT00940000154993.a.a #28	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079 #30	ENSGT00530000064839 #31	ENSGT00940000162450.q #32	ENSGT00940000163287.b	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b
Tiger	MODERN SPECIES	415	RING1 (ENSPTIG00000005545) #11	HSD17B8 (ENSPTIG00000005554) #12	SLC39A7 (ENSPTIG00000005581) #13	RXRB (ENSPTIG00000005607) #14	COL11A2 (ENSPTIG00000005735) #15	HLA-DPB1 (ENSPTIG00000005931)	HLA-DPA1 (ENSPTIG00000005948)	HLA-DOA (ENSPTIG00000005964) #16	BRD2 (ENSPTIG00000005977) #17	ENSPTIG00000006002	HLA-DMA (ENSPTIG00000006011) #18	HLA-DMB (ENSPTIG00000006035)	PSMB9 (ENSPTIG00000006050) #19	TAP1 (ENSPTIG00000006078) #20	PSMB8 (ENSPTIG00000006141) #21	TAP2 (ENSPTIG00000006162) #22	HLA-DOB (ENSPTIG00000006225) #24	ENSPTIG00000006266 #27	ENSPTIG00000006308 #27	HLA-DRA (ENSPTIG00000006439)	ENSPTIG00000006461 #28	BTNL2 (ENSPTIG00000006701) #29	ENSPTIG00000006731	ENSPTIG00000006752 #30	ENSPTIG00000006805	ENSPTIG00000006816 #32	NOTCH4 (ENSPTIG00000006842)	GPSM3 (ENSPTIG00000006883) #34	PBX2 (ENSPTIG00000006899) #35	AGER (ENSPTIG00000006921) #36	RNF5 (ENSPTIG00000007005)
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762.cc #15	ENSGT00940000162390.p	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000155371.n.a.a #27
lion	MODERN SPECIES	5	RING1 (ENSPLOG00000009313) #11	HSD17B8 (ENSPLOG00000009241) #12	SLC39A7 (ENSPLOG00000009206) #13	RXRB (ENSPLOG00000009094) #14	COL11A2 (ENSPLOG00000007928) #15	ENSPLOG00000007166	HLA-DPA1 (ENSPLOG00000006949)	HLA-DOA (ENSPLOG00000006926) #16	BRD2 (ENSPLOG00000006871) #17	HLA-DMA (ENSPLOG00000006786) #18	HLA-DMB (ENSPLOG00000006753)	ENSPLOG00000006735	PSMB9 (ENSPLOG00000006713) #19	TAP1 (ENSPLOG00000006688) #20	PSMB8 (ENSPLOG00000006662) #21	TAP2 (ENSPLOG00000006623) #22	HLA-DOB (ENSPLOG00000006603) #24	ENSPLOG00000006575 #27
leopard	MODERN SPECIES	30	HSD17B8 (ENSPPRG00000008960) #12	SLC39A7 (ENSPPRG00000009227) #13	RXRB (ENSPPRG00000010222) #14	COL11A2 (ENSPPRG00000001194) #15	HLA-DPB1 (ENSPPRG00000002022)	HLA-DPA1 (ENSPPRG00000002267)	HLA-DOA (ENSPPRG00000002484) #16	ENSPPRG00000002715 #17	ENSPPRG00000003003 #17	ENSPPRG00000003175	HLA-DMA (ENSPPRG00000004582) #18	HLA-DMB (ENSPPRG00000004964)	PSMB9 (ENSPPRG00000008776) #19	TAP1 (ENSPPRG00000009806) #20	PSMB8 (ENSPPRG00000010024) #21	TAP2 (ENSPPRG00000010234) #22	HLA-DOB (ENSPPRG00000010507) #24
Cat	DUPLICATION
Cat	MODERN SPECIES	236	ENSFCAG00000046098 #13	ENSFCAG00000050544	ENSFCAG00000042526 #14	ENSFCAG00000046454 #15	ENSFCAG00000047214 #15	ENSFCAG00000041523	ENSFCAG00000012247	ENSFCAG00000009697 #16	ENSFCAG00000009696 #17	ENSFCAG00000041486 #18	ENSFCAG00000040910	ENSFCAG00000051485	ENSFCAG00000030632 #19	ENSFCAG00000042806 #20	ENSFCAG00000023131 #21	ENSFCAG00000035701 #22	ENSFCAG00000041575 #24	ENSFCAG00000046253 #27	ENSFCAG00000029158	BTNL2 (ENSFCAG00000001685) #29	ENSFCAG00000028529	ENSFCAG00000024834 #30	ENSFCAG00000045335 #32	ENSFCAG00000037191	GPSM3 (ENSFCAG00000016212) #34	PBX2 (ENSFCAG00000004530) #35	AGER (ENSFCAG00000004529) #36	RNF5 (ENSFCAG00000004528)	AGPAT1 (ENSFCAG00000035621) #37	EGFL8 (ENSFCAG00000022700)	PPT2 (ENSFCAG00000004526)
Cat	MODERN SPECIES	236	ENSFCAG00000004010 #11	ENSFCAG00000043560	ENSFCAG00000006984 #13	ENSFCAG00000006981 #14	COL11A2 (ENSFCAG00000004005) #15	ENSFCAG00000041258	ENSFCAG00000044012	ENSFCAG00000042732 #16	ENSFCAG00000042841 #17	ENSFCAG00000009442 #18	ENSFCAG00000045369	ENSFCAG00000050701	ENSFCAG00000044069 #19	ENSFCAG00000042456 #20	ENSFCAG00000043821 #21	ENSFCAG00000045700 #22	ENSFCAG00000009202 #27	ENSFCAG00000040474 #24	ENSFCAG00000041443	ENSFCAG00000052131	ENSFCAG00000053744	DAXX (ENSFCAG00000004020)	ENSFCAG00000049571	ENSFCAG00000043390	ENSFCAG00000029182	ENSFCAG00000028199 #7	ENSFCAG00000051171 #8	ENSFCAG00000052529 #9	ENSFCAG00000041843 #10	VPS52 (ENSFCAG00000004011)	ENSFCAG00000041942 #11
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000161821.c.a #26	ENSGT00940000155371.n #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079.d #30	ENSGT00530000064839 #31	ENSGT00940000162450 #32	ENSGT00940000163287	ENSGT00390000002471 #34	ENSGT00940000160293 #35	ENSGT00890000139566 #36	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b #37
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000162892	ENSGT00940000154723.b #25	ENSGT00940000161821.d #26	ENSGT00940000155371.n #27	ENSGT00940000160997	ENSGT00940000162484.f #29	ENSGT00940000164957	ENSGT00940000162079.d #30
Megabat	MODERN SPECIES	3233													PSMB9 (ENSPVAG00000002804) #19	TAP1 (ENSPVAG00000002802) #20	PSMB8 (ENSPVAG00000002800) #21	TAP2 (ENSPVAG00000002794) #22	HLA-DOB (ENSPVAG00000002791) #24
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000162892	ENSGT00940000154723.b #25	ENSGT00940000161821.d #26	ENSGT00940000155371.n #27	ENSGT00940000160997	ENSGT00940000162484.f #29	ENSGT00940000164957	ENSGT00940000162079.d #30
Greater horseshoe bat	MODERN SPECIES	21	ENSRFEG00010014573 #10	VPS52 (ENSRFEG00010014510)	RING1 (ENSRFEG00010014424) #11	HSD17B8 (ENSRFEG00010014277) #12	SLC39A7 (ENSRFEG00010014223) #13	RXRB (ENSRFEG00010014125) #14	COL11A2 (ENSRFEG00010013940) #15	HLA-DPB1 (ENSRFEG00010013529)	HLA-DPA1 (ENSRFEG00010013424)	HLA-DOA (ENSRFEG00010013359) #16	BRD2 (ENSRFEG00010013276) #17	ENSRFEG00010012948 #18	PSMB9 (ENSRFEG00010012800) #19	TAP1 (ENSRFEG00010012779) #20	PSMB8 (ENSRFEG00010012709) #21	TAP2 (ENSRFEG00010012594) #22	HLA-DOB (ENSRFEG00010012534) #24	ENSRFEG00010012490	ENSRFEG00010012374	ENSRFEG00010010765 #25	ENSRFEG00010010549 #26	HLA-DQB2 (ENSRFEG00010010410) #25	ENSRFEG00010010287 #26	ENSRFEG00010010222 #27	HLA-DRA (ENSRFEG00010010177)	ENSRFEG00010010130	BTNL2 (ENSRFEG00010004871) #29	ENSRFEG00010004851	ENSRFEG00010004842	ENSRFEG00010004830 #27	ENSRFEG00010004789 #33
Microbat	MODERN SPECIES	1885										HLA-DMA (ENSMLUG00000005494) #18	HLA-DMB (ENSMLUG00000009907)	ENSMLUG00000026627	PSMB9 (ENSMLUG00000013890) #19	TAP1 (ENSMLUG00000013880) #20	PSMB8 (ENSMLUG00000013876) #21	TAP2 (ENSMLUG00000013870) #22
Equus	ANCESTRAL SPECIES	10	ENSGT00390000012691.c.b #10	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00860000136081	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000155371.n.g.b #27	ENSGT00940000155371.n.h #27	ENSGT00940000154723.b.y #25	ENSGT00940000161821.c.b #26	ENSGT00940000154723.b.z.a #25	ENSGT00940000161821.c.a #26	ENSGT00940000155371.n.g.a #27	ENSGT00940000160997	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079.d #30	ENSGT00860000135184.d.b.a	ENSGT00980000198488.m.a.a.b.a.a.b.c.b	ENSGT00530000064839 #31
Horse	MODERN SPECIES	12	B3GALT4 (ENSECAG00000052593) #9	VPS52 (ENSECAG00000019702)	RING1 (ENSECAG00000013736) #11	HSD17B8 (ENSECAG00000058465) #12	SLC39A7 (ENSECAG00000004794) #13	RXRB (ENSECAG00000023041) #14	COL11A2 (ENSECAG00000029028) #15	HLA-DOA (ENSECAG00000006603) #16	BRD2 (ENSECAG00000012089) #17	ENSECAG00000042051	HLA-DMA (ENSECAG00000003669) #18	HLA-DMB (ENSECAG00000021796)	TAP1 (ENSECAG00000022610) #20	PSMB8 (ENSECAG00000018887) #21	PSMB9 (ENSECAG00000016898) #19	TAP2 (ENSECAG00000007152) #22	HLA-DOB (ENSECAG00000020976) #24	ENSECAG00000012933 #27	ENSECAG00000020358 #27	ENSECAG00000052533 #25	ENSECAG00000009142 #26	ENSECAG00000017143 #25	Eqca-DQA1 (ENSECAG00000024259) #26	ENSECAG00000022072 #27	HLA-DRA (ENSECAG00000012660)	ENSECAG00000033265	BTNL2 (ENSECAG00000011452) #29	ENSECAG00000016943	ENSECAG00000014398 #30	ENSECAG00000038583	ENSECAG00000056152
Donkey	MODERN SPECIES	28	B3GALT4 (ENSEASG00005035058) #9	RPS18 (ENSEASG00005020817) #10	VPS52 (ENSEASG00005020809)	RING1 (ENSEASG00005020805) #11	SLC39A7 (ENSEASG00005020798) #13	RXRB (ENSEASG00005020792) #14	COL11A2 (ENSEASG00005030115) #15	HLA-DOA (ENSEASG00005020773) #16	BRD2 (ENSEASG00005020770) #17	ENSEASG00005032605	HLA-DMA (ENSEASG00005020764) #18	HLA-DMB (ENSEASG00005020759)	PSMB9 (ENSEASG00005020754) #19	TAP1 (ENSEASG00005020750) #20	PSMB8 (ENSEASG00005020748) #21	TAP2 (ENSEASG00005020743) #22	ENSEASG00005020739 #24	ENSEASG00005017377 #27	ENSEASG00005033717 #24	ENSEASG00005014836 #26	ENSEASG00005020693 #27	ENSEASG00005031301 #26	HLA-DQB1 (ENSEASG00005012362) #25	ENSEASG00005003380 #25	ENSEASG00005006994 #26	ENSEASG00005023862	ENSEASG00005020694 #27	BTNL2 (ENSEASG00005037724) #29	ENSEASG00005035285	ENSEASG00005037345 #30	ENSEASG00005031262
Atlantogenata	ANCESTRAL SPECIES	3	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498.r	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000154993 #28	ENSGT00940000155371 #27	ENSGT00940000160997	ENSGT00940000162484 #29
Afrotheria	ANCESTRAL SPECIES	83	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498.r	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000160997.m	ENSGT00940000162484 #29
Afrotheria_a	ANCESTRAL SPECIES	84	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160668 #12	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498.r	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #24	ENSGT00940000154723.b #25	ENSGT00940000161821 #26	ENSGT00940000160997.m	ENSGT00940000162484 #29
Hyrax	MODERN SPECIES	7111													PSMB9 (ENSPCAG00000016827) #19	TAP1 (ENSPCAG00000016767) #20	PSMB8 (ENSPCAG00000016741) #21	TAP2 (ENSPCAG00000016678) #22
Elephant	MODERN SPECIES	14	ENSLAFG00000032173 ##10	VPS52 (ENSLAFG00000004472)	RING1 (ENSLAFG00000021706) #11	HSD17B8 (ENSLAFG00000030087) #12	SLC39A7 (ENSLAFG00000002138) #13	RXRB (ENSLAFG00000002141) #14	COL11A2 (ENSLAFG00000009548) #15	ENSLAFG00000029575	HLA-DOA (ENSLAFG00000014863) #16	BRD2 (ENSLAFG00000016104) #17	HLA-DMA (ENSLAFG00000005738) #18	HLA-DMB (ENSLAFG00000004768)	PSMB9 (ENSLAFG00000025736) #19	TAP1 (ENSLAFG00000003214) #20	PSMB8 (ENSLAFG00000003213) #21	TAP2 (ENSLAFG00000028298) #22	HLA-DOB (ENSLAFG00000004052) #24	ENSLAFG00000029261 #25	ENSLAFG00000030016 #25	ENSLAFG00000018482 #25	ENSLAFG00000031292 #26	ENSLAFG00000001026	BTNL2 (ENSLAFG00000001025) #29
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	8432													PSMB9 (ENSETEG00000013343) #19	ENSETEG00000013337 #20	PSMB8 (ENSETEG00000013333) #21	ENSETEG00000013330 #22	HLA-DOB (ENSETEG00000013327) #24	ENSETEG00000013324 #22
Tenrec	MODERN SPECIES	8432																ENSETEG00000013324 #22	HLA-DOB (ENSETEG00000013327) #24	ENSETEG00000013330 #22	PSMB8 (ENSETEG00000013333) #21	ENSETEG00000013337 #20	PSMB9 (ENSETEG00000013343) #19
Xenarthra	ANCESTRAL SPECIES	66	ENSGT00390000012691.c.b #10	ENSGT00390000008815	ENSGT00940000161022 #11	ENSGT00940000160076 #13	ENSGT00940000159208.B #14	ENSGT00940000159762 #15	ENSGT00940000162390	ENSGT00940000162498.r	ENSGT00940000162112 #16	ENSGT00940000153385.b.a.b #17	ENSGT00940000161157 #18	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22
Armadillo	MODERN SPECIES	4056	ENSDNOG00000041084	RING1 (ENSDNOG00000019606) #11	SLC39A7 (ENSDNOG00000015430) #13	RXRB (ENSDNOG00000015431) #14	COL11A2 (ENSDNOG00000047004) #15	ENSDNOG00000037384	ENSDNOG00000045287	HLA-DPA1 (ENSDNOG00000043328)	HLA-DOA (ENSDNOG00000030617) #16	BRD2 (ENSDNOG00000006186) #17	HLA-DMA (ENSDNOG00000002005) #18	HLA-DMB (ENSDNOG00000045752)	PSMB9 (ENSDNOG00000035353) #19	TAP1 (ENSDNOG00000024030) #20	PSMB8 (ENSDNOG00000045248) #21	TAP2 (ENSDNOG00000034243) #22