Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821 #25	ENSGT00940000154723.b #26	ENSGT00940000162892	ENSGT00940000154993 #28	ENSGT00940000155371	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450 #18	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566
Primates	ANCESTRAL SPECIES	5	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000162892	ENSGT00940000154993 #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450 #18	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000154993 #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00940000162450 #18	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b	ENSGT00940000162975
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000162892	ENSGT00940000161821 #25	ENSGT00940000154993 #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b	ENSGT00940000162975
Mouse lemur	MODERN SPECIES	28	PFDN6 (ENSMICG00000000922) #7	RGL2 (ENSMICG00000000926) #8	TAPBP (ENSMICG00000042293) #9	DAXX (ENSMICG00000000933) #10	ENSMICG00000033163 #11	KIFC1 (ENSMICG00000005648) #12	PHF1 (ENSMICG00000005660) #13	CUTA (ENSMICG00000005673) #14	SYNGAP1 (ENSMICG00000005678) #15	SFTA2 (ENSMICG00000030909) #16	ENSMICG00000035395 #17	ENSMICG00000031166 #18	PSMB9 (ENSMICG00000015307) #19	TAP1 (ENSMICG00000015264) #20	PSMB8 (ENSMICG00000015254) #21	TAP2 (ENSMICG00000015245) #22	HLA-DOB (ENSMICG00000034483) #23	ENSMICG00000031829 #24	ENSMICG00000044751 #25	ENSMICG00000003714 #26	ENSMICG00000028538 #27	ENSMICG00000036984 #28	ENSMICG00000035687 #29	HLA-DRA (ENSMICG00000006228) #30	ENSMICG00000037923 #31	TREML2 (ENSMICG00000027522) #32	ENSMICG00000041702 #33	TREM2 (ENSMICG00000009719) #34	TREML1 (ENSMICG00000035283) #35	NFYA (ENSMICG00000009686) #36	ENSMICG00000038280 #37
Lemuriformes_a	ANCESTRAL SPECIES	76						ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000162892	ENSGT00940000154993 #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b	ENSGT00940000162975	ENSGT00940000155779.a.b
Coquerels sifaka	MODERN SPECIES	872						HLA-DPA1 (ENSPCOG00000015236)	HLA-DOA (ENSPCOG00000014372)	ENSPCOG00000018880	ENSPCOG00000018456	ENSPCOG00000016191	HLA-DMA (ENSPCOG00000022072)	HLA-DMB (ENSPCOG00000018934)	PSMB9 (ENSPCOG00000017686) #19	TAP1 (ENSPCOG00000019389) #20	PSMB8 (ENSPCOG00000028091) #21	TAP2 (ENSPCOG00000014799) #22	HLA-DOB (ENSPCOG00000022286) #23	HLA-DQB1 (ENSPCOG00000014494) #26
Greater bamboo lemur	MODERN SPECIES	650					ENSPSMG00000009792	HLA-DPB1 (ENSPSMG00000009639)	HLA-DPA1 (ENSPSMG00000009402)	HLA-DOA (ENSPSMG00000009261)	ENSPSMG00000009252	BRD2 (ENSPSMG00000009223)	HLA-DMA (ENSPSMG00000009171)	HLA-DMB (ENSPSMG00000009134)	PSMB9 (ENSPSMG00000009117) #19	TAP1 (ENSPSMG00000009102) #20	PSMB8 (ENSPSMG00000009083) #21	TAP2 (ENSPSMG00000008940) #22	HLA-DOB (ENSPSMG00000008851) #23	HLA-DQB1 (ENSPSMG00000008743) #26	ENSPSMG00000008349	ENSPSMG00000007912	HLA-DRA (ENSPSMG00000007272) #30	ENSPSMG00000007226	ENSPSMG00000007220
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	146	B3GALT4 (ENSOGAG00000006228)	RPS18 (ENSOGAG00000006225)	VPS52 (ENSOGAG00000006222)	RING1 (ENSOGAG00000006220)	HSD17B8 (ENSOGAG00000006214)	SLC39A7 (ENSOGAG00000030006)	RXRB (ENSOGAG00000011689)	COL11A2 (ENSOGAG00000025975)	ENSOGAG00000034269	ENSOGAG00000016138	HLA-DPA1 (ENSOGAG00000006476)	HLA-DOA (ENSOGAG00000014685)	BRD2 (ENSOGAG00000006473)	HLA-DMA (ENSOGAG00000006029)	HLA-DMB (ENSOGAG00000032749)	ENSOGAG00000013823 #22	PSMB9 (ENSOGAG00000013846) #19	TAP1 (ENSOGAG00000013836) #20	PSMB8 (ENSOGAG00000013830) #21	ENSOGAG00000031343 #22	HLA-DQB1 (ENSOGAG00000005662) #26	ENSOGAG00000008401 #25	ENSOGAG00000030012	ENSOGAG00000009732 #28	HLA-DRA (ENSOGAG00000008398) #30	BTNL2 (ENSOGAG00000008396)	ENSOGAG00000025050	ENSOGAG00000013069 #28	ENSOGAG00000025825 #18	NOTCH4 (ENSOGAG00000010193)	GPSM3 (ENSOGAG00000032276)
Bushbaby	MODERN SPECIES	146	HSD17B8 (ENSOGAG00000006214)	SLC39A7 (ENSOGAG00000030006)	RXRB (ENSOGAG00000011689)	COL11A2 (ENSOGAG00000025975)	ENSOGAG00000034269	ENSOGAG00000016138	HLA-DPA1 (ENSOGAG00000006476)	HLA-DOA (ENSOGAG00000014685)	BRD2 (ENSOGAG00000006473)	HLA-DMA (ENSOGAG00000006029)	HLA-DMB (ENSOGAG00000032749)	ENSOGAG00000013823 #22	PSMB9 (ENSOGAG00000013846) #19	TAP1 (ENSOGAG00000013836) #20	PSMB8 (ENSOGAG00000013830) #21	ENSOGAG00000031343 #22	HLA-DQB1 (ENSOGAG00000005662) #26	ENSOGAG00000008401 #25	ENSOGAG00000030012	ENSOGAG00000009732 #28	HLA-DRA (ENSOGAG00000008398) #30	BTNL2 (ENSOGAG00000008396)	ENSOGAG00000025050	ENSOGAG00000013069 #28	ENSOGAG00000025825 #18	NOTCH4 (ENSOGAG00000010193)	GPSM3 (ENSOGAG00000032276)	PBX2 (ENSOGAG00000016303)	AGER (ENSOGAG00000030141)	RNF5 (ENSOGAG00000031466)	AGPAT1 (ENSOGAG00000010187)
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000162892	ENSGT00940000154993 #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00530000064839	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b	ENSGT00940000162975	ENSGT00940000155779.a.b
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00530000064839	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b	ENSGT00940000162975	ENSGT00940000155779.a.b
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #26	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00530000064839	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #26	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00530000064839	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566
Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #26	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00530000064839	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #26	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.a #28	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00530000064839	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566
Gorilla	MODERN SPECIES	19	RING1 (ENSGGOG00000009842)	HSD17B8 (ENSGGOG00000009838)	SLC39A7 (ENSGGOG00000009830)	RXRB (ENSGGOG00000009823)	COL11A2 (ENSGGOG00000009799)	HLA-DPB1 (ENSGGOG00000013630)	HLA-DPA1 (ENSGGOG00000013625)	HLA-DOA (ENSGGOG00000010653)	ENSGGOG00000005838	BRD2 (ENSGGOG00000043461)	ENSGGOG00000005835	HLA-DMB (ENSGGOG00000022404)	PSMB9 (ENSGGOG00000010965) #19	TAP1 (ENSGGOG00000010958) #20	PSMB8 (ENSGGOG00000010953) #21	TAP2 (ENSGGOG00000010941) #22	HLA-DOB (ENSGGOG00000043194) #23	HLA-DQB2 (ENSGGOG00000014413) #26	ENSGGOG00000037744	HLA-DQB1 (ENSGGOG00000004252) #26	HLA-DQA1 (ENSGGOG00000013538)	ENSGGOG00000000700 #28	HLA-DRB5 (ENSGGOG00000037929) #28	HLA-DRA (ENSGGOG00000009861) #30	BTNL2 (ENSGGOG00000009855)	TSBP1 (ENSGGOG00000040681)	NOTCH4 (ENSGGOG00000002332)	GPSM3 (ENSGGOG00000002329)	PBX2 (ENSGGOG00000002325)	AGER (ENSGGOG00000002323)	RNF5 (ENSGGOG00000002320)
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #26	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.a #28	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00530000064839	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566
Pan	ANCESTRAL SPECIES	5	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #26	ENSGT00940000162892.a.b	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00530000064839	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b.w
Chimpanzee	MODERN SPECIES	19	RING1 (ENSPTRG00000018037)	HSD17B8 (ENSPTRG00000018036)	SLC39A7 (ENSPTRG00000018035)	RXRB (ENSPTRG00000018034)	COL11A2 (ENSPTRG00000018033)	HLA-DPB1 (ENSPTRG00000018030)	HLA-DPA1 (ENSPTRG00000018029)	HLA-DOA (ENSPTRG00000018028)	ENSPTRG00000018027	BRD2 (ENSPTRG00000042676)	ENSPTRG00000018026	PATR-DMB (ENSPTRG00000018025)	PSMB9 (ENSPTRG00000018024) #19	TAP1 (ENSPTRG00000018023) #20	PSMB8 (ENSPTRG00000018022) #21	TAP2 (ENSPTRG00000018021) #22	PATR-DOB (ENSPTRG00000018020) #23	HLA-DQB2 (ENSPTRG00000023404) #26	HLA-DQA2 (ENSPTRG00000034186)	HLA-DQB1 (ENSPTRG00000018018) #26	HLA-DQA1 (ENSPTRG00000018017)	PATR-DQB1 (ENSPTRG00000018001) #28	ENSPTRG00000051243 #28	PATR-DRB5 (ENSPTRG00000023735) #28	PATR-DRA (ENSPTRG00000018016) #30	BTNL2 (ENSPTRG00000043663)	ENSPTRG00000044399	TSBP1 (ENSPTRG00000018014)	NOTCH4 (ENSPTRG00000034379)	GPSM3 (ENSPTRG00000023968)	PBX2 (ENSPTRG00000018012)
Bonobo	MODERN SPECIES	19	HSD17B8 (ENSPPAG00000032286)	SLC39A7 (ENSPPAG00000028225)	RXRB (ENSPPAG00000038590)	COL11A2 (ENSPPAG00000013099)	HLA-DPB1 (ENSPPAG00000041449)	HLA-DPA1 (ENSPPAG00000031863)	HLA-DOA (ENSPPAG00000036361)	BRD2 (ENSPPAG00000016843)	ENSPPAG00000027710	HLA-DMA (ENSPPAG00000041639)	HLA-DMB (ENSPPAG00000037856)	ENSPPAG00000033020	PSMB9 (ENSPPAG00000038623) #19	TAP1 (ENSPPAG00000029436) #20	PSMB8 (ENSPPAG00000042377) #21	TAP2 (ENSPPAG00000033938) #22	HLA-DOB (ENSPPAG00000027428) #23	HLA-DQB2 (ENSPPAG00000041341) #26	HLA-DQA2 (ENSPPAG00000038014)	HLA-DQB1 (ENSPPAG00000041275) #26	ENSPPAG00000019881	ENSPPAG00000039594 #28	ENSPPAG00000036652 #28	ENSPPAG00000029790 #28	HLA-DRA (ENSPPAG00000041818) #30	ENSPPAG00000038384	ENSPPAG00000034948	NOTCH4 (ENSPPAG00000030396)	GPSM3 (ENSPPAG00000035669)	PBX2 (ENSPPAG00000039908)	AGER (ENSPPAG00000028489)
Human	MODERN SPECIES	18	RING1 (ENSG00000204227)	HSD17B8 (ENSG00000204228)	SLC39A7 (ENSG00000112473)	RXRB (ENSG00000204231)	COL11A2 (ENSG00000204248)	HLA-DPB1 (ENSG00000223865)	HLA-DPA1 (ENSG00000231389)	HLA-DOA (ENSG00000204252)	BRD2 (ENSG00000204256)	HLA-DMA (ENSG00000204257)	ENSG00000248993	HLA-DMB (ENSG00000242574)	TAP1 (ENSG00000168394) #20	PSMB9 (ENSG00000240065) #19	PSMB8 (ENSG00000204264) #21	TAP2 (ENSG00000204267) #22	ENSG00000250264	HLA-DOB (ENSG00000241106) #23	HLA-DQB2 (ENSG00000232629) #26	HLA-DQA2 (ENSG00000237541)	HLA-DQB1 (ENSG00000179344) #26	HLA-DQA1 (ENSG00000196735)	HLA-DRB1 (ENSG00000196126) #28	HLA-DRB5 (ENSG00000198502) #28	HLA-DRA (ENSG00000204287) #30	BTNL2 (ENSG00000204290)	TSBP1 (ENSG00000204296)	NOTCH4 (ENSG00000204301)	GPSM3 (ENSG00000213654)	PBX2 (ENSG00000204304)	AGER (ENSG00000204305)
Orangutan	MODERN SPECIES	19	RING1 (ENSPPYG00000017242)	HSD17B8 (ENSPPYG00000017241)	SLC39A7 (ENSPPYG00000017240)	RXRB (ENSPPYG00000017239)	COL11A2 (ENSPPYG00000017238)	HLA-DPA1 (ENSPPYG00000017229)	ENSPPYG00000029571	HLA-DOA (ENSPPYG00000016495)	BRD2 (ENSPPYG00000017228)	ENSPPYG00000031820	ENSPPYG00000017227	HLA-DMB (ENSPPYG00000017226)	PSMB9 (ENSPPYG00000017225) #19	TAP1 (ENSPPYG00000017224) #20	PSMB8 (ENSPPYG00000017223) #21	TAP2 (ENSPPYG00000017222) #22	HLA-DOB (ENSPPYG00000017221) #23	HLA-DQB2 (ENSPPYG00000017220) #26	HLA-DQA2 (ENSPPYG00000017219)	ENSPPYG00000017216 #28	HLA-DRB1 (ENSPPYG00000016490) #28	HLA-DRA (ENSPPYG00000017234) #30	BTNL2 (ENSPPYG00000017215)	TSBP1 (ENSPPYG00000016489)	NOTCH4 (ENSPPYG00000016488)	GPSM3 (ENSPPYG00000016487)	PBX2 (ENSPPYG00000016486)	AGER (ENSPPYG00000016485)	RNF5 (ENSPPYG00000016484)	AGPAT1 (ENSPPYG00000016483)	EGFL8 (ENSPPYG00000041054)
Gibbon	MODERN SPECIES	10	HSD17B8 (ENSNLEG00000006824)	SLC39A7 (ENSNLEG00000006815)	RXRB (ENSNLEG00000006809)	ENSNLEG00000030023	HLA-DPB1 (ENSNLEG00000006801)	HLA-DPA1 (ENSNLEG00000034417)	ENSNLEG00000031675	BRD2 (ENSNLEG00000006782)	ENSNLEG00000032110	HLA-DMA (ENSNLEG00000006775)	HLA-DMB (ENSNLEG00000006770)	ENSNLEG00000032895	PSMB9 (ENSNLEG00000006757) #19	TAP1 (ENSNLEG00000006738) #20	PSMB8 (ENSNLEG00000006733) #21	TAP2 (ENSNLEG00000006714) #22	HLA-DOB (ENSNLEG00000027543) #23	HLA-DQB2 (ENSNLEG00000006713) #26	HLA-DQA2 (ENSNLEG00000027015)	HLA-DQB1 (ENSNLEG00000006693) #26	HLA-DQA1 (ENSNLEG00000032515)	ENSNLEG00000032832 #28	HLA-DRA (ENSNLEG00000006686) #30	BTNL2 (ENSNLEG00000006679)	ENSNLEG00000006667	ENSNLEG00000006638	GPSM3 (ENSNLEG00000033153)	PBX2 (ENSNLEG00000006632)	AGER (ENSNLEG00000006604)	RNF5 (ENSNLEG00000027395)	AGPAT1 (ENSNLEG00000006594)
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a.b	ENSGT00940000154723.b.m.b #26	ENSGT00940000162892.a.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997 #30	ENSGT00530000064839	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b.qc.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a.b	ENSGT00940000154993.m.a.a.a #28	ENSGT00940000154723.b.m.b #26	ENSGT00940000162892.a.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.a.a.b.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000154993.m.a.a.b.b #28	ENSGT00940000160997 #30	ENSGT00530000064839	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b.qc.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a.b	ENSGT00940000154993.m.a.a.a #28	ENSGT00940000154723.b.m.b #26	ENSGT00940000162892.a.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b.a.b #28	ENSGT00940000154993.m.a.a.b.b #28	ENSGT00940000160997 #30	ENSGT00530000064839	ENSGT00950000183123.h.b	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293
Macaca	ANCESTRAL SPECIES	9	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498.k	ENSGT00940000162112	ENSGT00940000153385.b.a.b.qc.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a.b	ENSGT00940000154993.m.a.a.a #28	ENSGT00940000154993.m.b.a.b #28	ENSGT00940000154993.m.a.a.b.b #28	ENSGT00940000160997 #30	ENSGT00530000064839	ENSGT00950000183123.h.b	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00390000012691.c.b.m.b	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160076	ENSGT00940000160668	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162498.k	ENSGT00940000162112	ENSGT00940000153385.b.a.b.qc.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154993.m.a.b #28	ENSGT00940000160997 #30	ENSGT00530000064839	ENSGT00950000183123.h.b	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b	ENSGT00940000162975	ENSGT00940000155779.a.b	ENSGT00940000162382	ENSGT00920000149187
Crab-eating macaque	MODERN SPECIES	14	WDR46 (ENSMFAG00000000475)	B3GALT4 (ENSMFAG00000041942)	RPS18 (ENSMFAG00000032199)	COL11A2 (ENSMFAG00000017491)	RING1 (ENSMFAG00000002610)	SLC39A7 (ENSMFAG00000038848)	HSD17B8 (ENSMFAG00000037332)	RXRB (ENSMFAG00000003583)	HLA-DOA (ENSMFAG00000058905)	BRD2 (ENSMFAG00000037520)	ENSMFAG00000060572	HLA-DMA (ENSMFAG00000042109)	HLA-DMB (ENSMFAG00000004018)	PSMB9 (ENSMFAG00000038128) #19	TAP1 (ENSMFAG00000041369) #20	TAP2 (ENSMFAG00000037139) #22	HLA-DOB (ENSMFAG00000003652) #23	HLA-DQA1 (ENSMFAG00000002949)	ENSMFAG00000054107	HLA-DRB5 (ENSMFAG00000000676) #28	ENSMFAG00000058962 #28	HLA-DRA (ENSMFAG00000032157) #30	ENSMFAG00000033140	ENSMFAG00000049929	ENSMFAG00000033054	RNF5 (ENSMFAG00000033282)	ENSMFAG00000059430	GPSM3 (ENSMFAG00000044173)	PBX2 (ENSMFAG00000045367)	AGER (ENSMFAG00000038314)	AGPAT1 (ENSMFAG00000042426)
Rhesus	MODERN SPECIES	14	VPS52 (ENSMMUG00000003864)	ENSMMUG00000003867	RING1 (ENSMMUG00000003863)	SLC39A7 (ENSMMUG00000003859)	HSD17B8 (ENSMMUG00000003861)	RXRB (ENSMMUG00000003858)	COL11A2 (ENSMMUG00000003850)	ENSMMUG00000019371	ENSMMUG00000041095	MAMU-DOA (ENSMMUG00000015734)	BRD2 (ENSMMUG00000023138)	MAMU-DMB (ENSMMUG00000022626)	ENSMMUG00000063291	PSMB9 (ENSMMUG00000011304) #19	PSMB8 (ENSMMUG00000011301) #20	MAMU-DOB (ENSMMUG00000011293) #22	ENSMMUG00000054826	MAMU-DRB1 (ENSMMUG00000029799) #28	MAMU-DRA (ENSMMUG00000039082) #30	TSBP1 (ENSMMUG00000018425)	ENSMMUG00000029402	NOTCH4 (ENSMMUG00000018461)	GPSM3 (ENSMMUG00000018459)	PBX2 (ENSMMUG00000018456)	AGER (ENSMMUG00000018442)	RNF5 (ENSMMUG00000018438)	AGPAT1 (ENSMMUG00000018434)	EGFL8 (ENSMMUG00000018432)	PRRT1 (ENSMMUG00000016647)	FKBPL (ENSMMUG00000015230)	ATF6B (ENSMMUG00000015229)
Pig-tailed macaque	MODERN SPECIES	528	RXRB (ENSMNEG00000034252)	COL11A2 (ENSMNEG00000022236)	ENSMNEG00000010287	HLA-DPB1 (ENSMNEG00000029725)	HLA-DPA1 (ENSMNEG00000040889)	HLA-DOA (ENSMNEG00000008508)	BRD2 (ENSMNEG00000030743)	ENSMNEG00000039758	HLA-DMA (ENSMNEG00000032904)	HLA-DMB (ENSMNEG00000044507)	ENSMNEG00000035658	ENSMNEG00000036723	PSMB9 (ENSMNEG00000038721) #19	TAP1 (ENSMNEG00000041518) #20	PSMB8 (ENSMNEG00000044942) #21	TAP2 (ENSMNEG00000041413) #22	HLA-DOB (ENSMNEG00000043598) #23	HLA-DQB1 (ENSMNEG00000027969) #26	HLA-DQA1 (ENSMNEG00000038603)	ENSMNEG00000044119 #28	ENSMNEG00000018617	ENSMNEG00000020869 #28
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498.m	ENSGT00940000162498.n	ENSGT00940000162112	ENSGT00940000153385.b.a.b.qc.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353.h #23	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a.b	ENSGT00940000155046.t	ENSGT00390000015391	ENSGT00940000153251.b.a	ENSGT00530000064866	ENSGT00390000013322	ENSGT00730000111474	ENSGT00390000010291	ENSGT00960000186815	ENSGT00940000164570	ENSGT00940000164618	ENSGT00390000016847 #17	ENSGT00390000011767 #16
Olive baboon	MODERN SPECIES	16	RING1 (ENSPANG00000023635)	HSD17B8 (ENSPANG00000023634)	SLC39A7 (ENSPANG00000023633)	RXRB (ENSPANG00000018527)	COL11A2 (ENSPANG00000009194)	HLA-DPB1 (ENSPANG00000005764)	HLA-DPA1 (ENSPANG00000018967)	HLA-DOA (ENSPANG00000031879)	BRD2 (ENSPANG00000019626)	ENSPANG00000035618	HLA-DMA (ENSPANG00000026492)	HLA-DMB (ENSPANG00000019593)	PSMB9 (ENSPANG00000033974) #19	TAP1 (ENSPANG00000024178) #20	PSMB8 (ENSPANG00000016588) #21	TAP2 (ENSPANG00000015103) #22	HLA-DOB (ENSPANG00000016388) #23	ENSPANG00000044498	ENSPANG00000007627	TCF19 (ENSPANG00000024035)	CCHCR1 (ENSPANG00000017010)	ENSPANG00000049186	PSORS1C2 (ENSPANG00000024487)	CDSN (ENSPANG00000047914)	C6orf15 (ENSPANG00000011097)	ENSPANG00000031147	ENSPANG00000009406 #17	SFTA2 (ENSPANG00000030986) #16	VARS2 (ENSPANG00000018481)	GTF2H4 (ENSPANG00000026494)	DDR1 (ENSPANG00000024488)
Cercopithecinae_d	ANCESTRAL SPECIES	197					ENSGT00940000162390	ENSGT00940000162498.n	ENSGT00940000162112	ENSGT00940000153385.b.a.b.qc.b	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353.h #23	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a.b
Drill	MODERN SPECIES	1605						ENSMLEG00000035946	HLA-DOA (ENSMLEG00000037836)	ENSMLEG00000042296	ENSMLEG00000035779	HLA-DMA (ENSMLEG00000039758)	HLA-DMB (ENSMLEG00000032921)	ENSMLEG00000033307	PSMB9 (ENSMLEG00000009919) #19	TAP1 (ENSMLEG00000042023) #20	PSMB8 (ENSMLEG00000028732) #21	TAP2 (ENSMLEG00000040111) #22	HLA-DOB (ENSMLEG00000044332) #23
Sooty mangabey	MODERN SPECIES	451					HLA-DPB1 (ENSCATG00000038170)	ENSCATG00000024393	HLA-DOA (ENSCATG00000035917)	ENSCATG00000034965	ENSCATG00000037729	HLA-DMA (ENSCATG00000030669)	HLA-DMB (ENSCATG00000024024)	ENSCATG00000037243	PSMB9 (ENSCATG00000041856) #19	TAP1 (ENSCATG00000033980) #20	PSMB8 (ENSCATG00000024878) #21	TAP2 (ENSCATG00000038838) #22	ENSCATG00000036138 #23	HLA-DQB1 (ENSCATG00000030073) #26	HLA-DQA1 (ENSCATG00000012156)
Rhinopithecus	ANCESTRAL SPECIES	177							ENSGT00940000162112	ENSGT00940000153385.b.a.b.nc	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #26	ENSGT00940000154723.b.m.b #26	ENSGT00940000162892.a.a.a	ENSGT00940000154993.m.a.b #28	ENSGT00940000154993.m.b #28	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997 #30	ENSGT00530000064839	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b
Golden snub-nosed monkey	MODERN SPECIES	1416							HLA-DOA (ENSRROG00000000054)	ENSRROG00000012557	ENSRROG00000034857	HLA-DMA (ENSRROG00000037828)	HLA-DMB (ENSRROG00000039771)	ENSRROG00000012955	PSMB9 (ENSRROG00000005028) #19	TAP1 (ENSRROG00000021353) #20	PSMB8 (ENSRROG00000019326) #21	TAP2 (ENSRROG00000033497) #22
Black snub-nosed monkey	MODERN SPECIES	1396							HLA-DOA (ENSRBIG00000041291)	ENSRBIG00000044329	ENSRBIG00000033102	HLA-DMA (ENSRBIG00000027897)	HLA-DMB (ENSRBIG00000031730)	ENSRBIG00000031206	PSMB9 (ENSRBIG00000042419) #19	TAP1 (ENSRBIG00000038729) #20	PSMB8 (ENSRBIG00000032621) #21	TAP2 (ENSRBIG00000042752) #22	HLA-DOB (ENSRBIG00000039119) #23	ENSRBIG00000031872 #26	HLA-DQA1 (ENSRBIG00000031838)
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b.lc	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.l.b #26	ENSGT00940000162892.a.a.d	ENSGT00940000154723.b.l.a.b #26	ENSGT00940000162892.a.a.c	ENSGT00940000154993.n #28	ENSGT00940000154723.b.k #26	ENSGT00940000162892.a.b	ENSGT00940000154723.b.l.a.a #26	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00530000064839	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293
Cebidae	ANCESTRAL SPECIES	5	ENSGT00940000161022.b	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b.lc	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.l.b #26	ENSGT00940000162892.a.a.d	ENSGT00940000154723.b.l.a.b #26	ENSGT00940000162892.a.a.c	ENSGT00940000154993.n.a #28
Cebidae_a	ANCESTRAL SPECIES	25	ENSGT00940000161022.b	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b.lc	ENSGT00860000136081	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.l.b #26	ENSGT00940000162892.a.a.d	ENSGT00940000154723.b.l.a.b #26	ENSGT00940000162892.a.a.c	ENSGT00940000154993.n.a.b #28
Bolivian squirrel monkey	MODERN SPECIES	59	LRRC1 (ENSSBOG00000035746)	KLHL31 (ENSSBOG00000033630)	GCLC (ENSSBOG00000023419)	ELOVL5 (ENSSBOG00000034870)	ENSSBOG00000021942	GCM1 (ENSSBOG00000005634)	FBXO9 (ENSSBOG00000019141)	CILK1 (ENSSBOG00000017283)	GSTA4 (ENSSBOG00000020856)	ENSSBOG00000025505	GSTA5 (ENSSBOG00000023195)	TMEM14A (ENSSBOG00000022452)	PSMB9 (ENSSBOG00000022067) #19	TAP1 (ENSSBOG00000027226) #20	PSMB8 (ENSSBOG00000026986) #21	TAP2 (ENSSBOG00000021205) #22	HLA-DOB (ENSSBOG00000029243) #23	ENSSBOG00000012276 #26	ENSSBOG00000035334	ENSSBOG00000016392 #26	ENSSBOG00000021233	ENSSBOG00000031743 #28	ENSSBOG00000032160 #28
Capuchin	MODERN SPECIES	24	VPS52 (ENSCCAG00000029806)	RING1 (ENSCCAG00000020672)	HSD17B8 (ENSCCAG00000034063)	SLC39A7 (ENSCCAG00000021481)	RXRB (ENSCCAG00000015878)	COL11A2 (ENSCCAG00000021086)	HLA-DPB1 (ENSCCAG00000036491)	HLA-DPA1 (ENSCCAG00000035048)	HLA-DOA (ENSCCAG00000024211)	ENSCCAG00000016930	HLA-DMA (ENSCCAG00000031122)	HLA-DMB (ENSCCAG00000030904)	PSMB9 (ENSCCAG00000036808) #19	TAP1 (ENSCCAG00000024218) #20	PSMB8 (ENSCCAG00000026335) #21	TAP2 (ENSCCAG00000035497) #22	HLA-DOB (ENSCCAG00000034021) #23	ENSCCAG00000028168 #26	ENSCCAG00000023824	ENSCCAG00000025088 #26	HLA-DQA2 (ENSCCAG00000023549)	HLA-DRB1 (ENSCCAG00000025004) #28	ENSCCAG00000024284 #28	ENSCCAG00000033580 #28	HLA-DRA (ENSCCAG00000027271) #30	BTNL2 (ENSCCAG00000037406)	TSBP1 (ENSCCAG00000034222)	ENSCCAG00000029507	GPSM3 (ENSCCAG00000026910)	NOTCH4 (ENSCCAG00000025076)	PBX2 (ENSCCAG00000034408)
Marmoset	MODERN SPECIES	16	B3GALT4 (ENSCJAG00000043225)	ENSCJAG00000021650	VPS52 (ENSCJAG00000021644)	RING1 (ENSCJAG00000081691)	ENSCJAG00000021632	SLC39A7 (ENSCJAG00000021622)	RXRB (ENSCJAG00000021619)	COL11A2 (ENSCJAG00000021577)	HLA-DPB1 (ENSCJAG00000021575)	HLA-DPA1 (ENSCJAG00000057301)	HLA-DOA (ENSCJAG00000021571)	ENSCJAG00000021566	HLA-DMA (ENSCJAG00000021558)	PSMB9 (ENSCJAG00000021553) #19	TAP1 (ENSCJAG00000021552) #20	TAP2 (ENSCJAG00000021550) #22	HLA-DOB (ENSCJAG00000035217) #23	ENSCJAG00000045515	ENSCJAG00000021548 #26	ENSCJAG00000072040	ENSCJAG00000043141	ENSCJAG00000073641	ENSCJAG00000082318	ENSCJAG00000046350	ENSCJAG00000044447	ENSCJAG00000042232	ENSCJAG00000072632	ENSCJAG00000047812	ENSCJAG00000083244	ENSCJAG00000010588	ENSCJAG00000082116
Mas night monkey	MODERN SPECIES	1006				HLA-DPA1 (ENSANAG00000025586)	ENSANAG00000021916	ENSANAG00000020251	HLA-DOA (ENSANAG00000023738)	BRD2 (ENSANAG00000025054)	ENSANAG00000022510	HLA-DMA (ENSANAG00000024515)	HLA-DMB (ENSANAG00000031322)	ENSANAG00000029686	PSMB9 (ENSANAG00000018195) #19	TAP1 (ENSANAG00000025374) #20	PSMB8 (ENSANAG00000023214) #21	TAP2 (ENSANAG00000023266) #22	HLA-DQB2 (ENSANAG00000025105) #26	HLA-DQA2 (ENSANAG00000023973)	ENSANAG00000023444 #26	ENSANAG00000025439
Tarsier	MODERN SPECIES	6430											HLA-DMA (ENSTSYG00000013575)	HLA-DMB (ENSTSYG00000013568)	PSMB9 (ENSTSYG00000007747) #19	TAP1 (ENSTSYG00000007737) #20	PSMB8 (ENSTSYG00000007730) #21	TAP2 (ENSTSYG00000029149) #22	HLA-DOB (ENSTSYG00000007697) #23
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821 #25	ENSGT00940000154723.b #26	ENSGT00940000162892	ENSGT00940000154993 #28	ENSGT00940000155371	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450 #18	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566
Tree shrew	MODERN SPECIES	5171															PSMB8 (ENSTBEG00000007794) #21	ENSTBEG00000007418 #22	ENSTBEG00000007262 #23
Glires	ANCESTRAL SPECIES	5	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821 #25	ENSGT00940000154723.b #26	ENSGT00940000162892	ENSGT00940000154993 #28	ENSGT00940000155371	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450 #18	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566
Rodentia	ANCESTRAL SPECIES	6	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450 #18	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00940000162450 #18	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000162892	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00940000162450 #18	ENSGT00980000198621	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	42	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00940000162450 #18	ENSGT00980000198621	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000155371	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00940000162450 #18	ENSGT00980000198621	ENSGT00940000154993.k.a #28	ENSGT00940000154993.k.b #28	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b
Long-tailed chinchilla	MODERN SPECIES	144	VPS52 (ENSCLAG00000008115)	RING1 (ENSCLAG00000009149)	HSD17B8 (ENSCLAG00000007885)	SLC39A7 (ENSCLAG00000014475)	RXRB (ENSCLAG00000013699)	COL11A2 (ENSCLAG00000007783)	HLA-DPA1 (ENSCLAG00000010668)	HLA-DPB1 (ENSCLAG00000013126)	HLA-DOA (ENSCLAG00000011531)	BRD2 (ENSCLAG00000009750)	HLA-DMA (ENSCLAG00000014679)	HLA-DMB (ENSCLAG00000008468)	PSMB9 (ENSCLAG00000007918) #19	TAP1 (ENSCLAG00000008052) #20	PSMB8 (ENSCLAG00000006990) #21	TAP2 (ENSCLAG00000012654) #22	HLA-DOB (ENSCLAG00000011735) #23	HLA-DQB2 (ENSCLAG00000011869) #26	ENSCLAG00000009507 #25	ENSCLAG00000016042	ENSCLAG00000013098	HLA-DRA (ENSCLAG00000009768) #30	BTNL2 (ENSCLAG00000007142)	ENSCLAG00000015677	ENSCLAG00000011744 #18	ENSCLAG00000009141	GPSM3 (ENSCLAG00000007406)	PBX2 (ENSCLAG00000007051)	AGER (ENSCLAG00000013330)	RNF5 (ENSCLAG00000009576)	ENSCLAG00000008617
Degu	MODERN SPECIES	46	WDR46 (ENSODEG00000017342)	B3GALT4 (ENSODEG00000017281)	ENSODEG00000017344	VPS52 (ENSODEG00000017744)	RING1 (ENSODEG00000017691)	HSD17B8 (ENSODEG00000017486)	SLC39A7 (ENSODEG00000017361)	RXRB (ENSODEG00000017146)	COL11A2 (ENSODEG00000017513)	HLA-DPA1 (ENSODEG00000017716)	HLA-DOA (ENSODEG00000017569)	BRD2 (ENSODEG00000017239)	ENSODEG00000017381	HLA-DMB (ENSODEG00000017802)	PSMB8 (ENSODEG00000017662) #21	TAP2 (ENSODEG00000017797) #22	PSMB9 (ENSODEG00000017656) #19	TAP1 (ENSODEG00000017484) #20	HLA-DOB (ENSODEG00000017495) #23	ENSODEG00000017249 #26	ENSODEG00000017510 #25	ENSODEG00000017402 #28	ENSODEG00000017435 #28	ENSODEG00000017398	ENSODEG00000017414	ENSODEG00000017401	ENSODEG00000017653	ENSODEG00000017483	PBX2 (ENSODEG00000017449)	ENSODEG00000017466	ENSODEG00000017614
Guinea pig	MODERN SPECIES	15	HSD17B8 (ENSCPOG00000013940)	SLC39A7 (ENSCPOG00000023790)	RXRB (ENSCPOG00000013936)	COL11A2 (ENSCPOG00000020466)	ENSCPOG00000035477	ENSCPOG00000024142	ENSCPOG00000032859	ENSCPOG00000002427	HLA-DOA (ENSCPOG00000012562)	BRD2 (ENSCPOG00000002811)	HLA-DMA (ENSCPOG00000015044)	HLA-DMB (ENSCPOG00000002810)	PSMB9 (ENSCPOG00000002121) #19	TAP1 (ENSCPOG00000026988) #20	PSMB8 (ENSCPOG00000000729) #21	TAP2 (ENSCPOG00000038951) #22	HLA-DOB (ENSCPOG00000033895) #23	HLA-DQB2 (ENSCPOG00000038606) #26	ENSCPOG00000014463	ENSCPOG00000040083 #28	ENSCPOG00000003574 #28	ENSCPOG00000036465	HLA-DRA (ENSCPOG00000012309) #30	BTNL2 (ENSCPOG00000004277)	ENSCPOG00000023019	ENSCPOG00000000591	PBX2 (ENSCPOG00000037281)	AGER (ENSCPOG00000000590)	RNF5 (ENSCPOG00000030132)	AGPAT1 (ENSCPOG00000037644)	EGFL8 (ENSCPOG00000040046)
Naked mole-rat female	MODERN SPECIES	4	VPS52 (ENSHGLG00000017226)	RING1 (ENSHGLG00000019474)	HSD17B8 (ENSHGLG00000019497)	SLC39A7 (ENSHGLG00000018434)	RXRB (ENSHGLG00000018456)	COL11A2 (ENSHGLG00000018531)	HLA-DPB1 (ENSHGLG00000019389)	HLA-DPA1 (ENSHGLG00000019266)	HLA-DOA (ENSHGLG00000019255)	BRD2 (ENSHGLG00000019334)	HLA-DMA (ENSHGLG00000017048)	HLA-DMB (ENSHGLG00000017060)	PSMB9 (ENSHGLG00000036914) #19	TAP1 (ENSHGLG00000017081) #20	PSMB8 (ENSHGLG00000017087) #21	TAP2 (ENSHGLG00000019356) #22	HLA-DOB (ENSHGLG00000016652) #23	HLA-DQB2 (ENSHGLG00000038840) #26	ENSHGLG00000043086	ENSHGLG00000011398	ENSHGLG00000011613 #28	ENSHGLG00000011873 #28	ENSHGLG00000012074 #28	HLA-DRA (ENSHGLG00000012243) #30	GPSM3 (ENSHGLG00000012807)	ENSHGLG00000013320	AGER (ENSHGLG00000013559)	ENSHGLG00000048713	AGPAT1 (ENSHGLG00000013956)	EGFL8 (ENSHGLG00000014379)	PPT2 (ENSHGLG00000016656)
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00940000162450 #18	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566
Marmotini	ANCESTRAL SPECIES	18	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353.i #23	ENSGT00940000161821.l.a #25	ENSGT00940000154723.b #26	ENSGT00940000161821.k #25	ENSGT00940000154993.k.a #28	ENSGT00940000154993.k.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00940000162450.b.a #18	ENSGT00940000163287	ENSGT00980000198621	ENSGT00390000002471	ENSGT00940000160293
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353.i #23
Arctic ground squirrel	MODERN SPECIES	1178													PSMB9 (ENSUPAG00010005439) #19	TAP1 (ENSUPAG00010004755) #20	PSMB8 (ENSUPAG00010004745) #21	TAP2 (ENSUPAG00010004733) #22	ENSUPAG00010004730 #23
Squirrel	MODERN SPECIES	76	VPS52 (ENSSTOG00000002397)	RING1 (ENSSTOG00000026166)	HSD17B8 (ENSSTOG00000020853)	SLC39A7 (ENSSTOG00000014304)	RXRB (ENSSTOG00000027099)	COL11A2 (ENSSTOG00000003578)	HLA-DPB1 (ENSSTOG00000003567)	HLA-DPA1 (ENSSTOG00000003558)	HLA-DOA (ENSSTOG00000010820)	BRD2 (ENSSTOG00000010807)	HLA-DMA (ENSSTOG00000009246)	HLA-DMB (ENSSTOG00000019821)	PSMB9 (ENSSTOG00000003475) #19	TAP1 (ENSSTOG00000003451) #20	PSMB8 (ENSSTOG00000019724) #21	TAP2 (ENSSTOG00000003413) #22	ENSSTOG00000030715	HLA-DOB (ENSSTOG00000003405) #23	ENSSTOG00000028098
Alpin marmot	MODERN SPECIES	20	VPS52 (ENSMMMG00000024234)	RING1 (ENSMMMG00000024233)	HSD17B8 (ENSMMMG00000024232)	SLC39A7 (ENSMMMG00000024231)	RXRB (ENSMMMG00000024230)	COL11A2 (ENSMMMG00000024229)	HLA-DPB1 (ENSMMMG00000024228)	HLA-DPA1 (ENSMMMG00000024227)	HLA-DOA (ENSMMMG00000024226)	BRD2 (ENSMMMG00000024225)	HLA-DMA (ENSMMMG00000024224)	HLA-DMB (ENSMMMG00000024223)	PSMB9 (ENSMMMG00000024222) #19	TAP1 (ENSMMMG00000024221) #20	PSMB8 (ENSMMMG00000024220) #21	TAP2 (ENSMMMG00000024218) #22	HLA-DOB (ENSMMMG00000024217) #23	ENSMMMG00000024215	ENSMMMG00000024056 #26	ENSMMMG00000020395	ENSMMMG00000018808 #26	ENSMMMG00000018797	ENSMMMG00000018785 #25	ENSMMMG00000018780 #28	ENSMMMG00000018777 #28	HLA-DRA (ENSMMMG00000018744) #30	BTNL2 (ENSMMMG00000018734)	ENSMMMG00000018723	ENSMMMG00000018720	ENSMMMG00000018661 #18	ENSMMMG00000018655 #18
Eurasian red squirrel	MODERN SPECIES	16	ENSSVLG00005004778	RING1 (ENSSVLG00005004804)	HSD17B8 (ENSSVLG00005004902)	SLC39A7 (ENSSVLG00005004925)	RXRB (ENSSVLG00005004952)	COL11A2 (ENSSVLG00005005202)	HLA-DPB1 (ENSSVLG00005006269)	HLA-DPA1 (ENSSVLG00005006304)	HLA-DOA (ENSSVLG00005006335)	BRD2 (ENSSVLG00005006374)	HLA-DMA (ENSSVLG00005006465)	HLA-DMB (ENSSVLG00005006515)	PSMB9 (ENSSVLG00005006563) #19	TAP1 (ENSSVLG00005006618) #20	PSMB8 (ENSSVLG00005006647) #21	TAP2 (ENSSVLG00005006696) #22	HLA-DOB (ENSSVLG00005006746) #23	ENSSVLG00005006864 #26	ENSSVLG00005007173 #25	HLA-DQB2 (ENSSVLG00005007368) #26	ENSSVLG00005007455 #25	ENSSVLG00005007482 #28	ENSSVLG00005007511	ENSSVLG00005007546 #28	HLA-DRA (ENSSVLG00005007588) #30	BTNL2 (ENSSVLG00005007627)	ENSSVLG00005007707	ENSSVLG00005007731	ENSSVLG00005007751	ENSSVLG00005008664 #18	NOTCH4 (ENSSVLG00005008720)
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000154993.k.a #28	ENSGT00940000154993.l #28	ENSGT00940000155371	ENSGT00940000154993.k.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450 #18	ENSGT00940000163287	ENSGT00390000002471
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450 #18	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293
Muroidea	ANCESTRAL SPECIES	15	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450 #18	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450 #18	ENSGT00980000198621	ENSGT00940000163287	ENSGT00390000002471
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00940000162450 #18	ENSGT00980000198621	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b
Cricetinae	ANCESTRAL SPECIES	43		ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000154993.k.b.b #28	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00940000162450 #18	ENSGT00980000198621	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b
Golden Hamster	MODERN SPECIES	856					Ring1 (ENSMAUG00000012254)	Hsd17b8 (ENSMAUG00000013407)	Slc39a7 (ENSMAUG00000015255)	Rxrb (ENSMAUG00000009043)	Col11a2 (ENSMAUG00000021348)	Brd2 (ENSMAUG00000006799)	H2-DMa (ENSMAUG00000000861)	ENSMAUG00000008923	Psmb9 (ENSMAUG00000007584) #19	Tap1 (ENSMAUG00000017718) #20	Psmb8 (ENSMAUG00000003396) #21	Tap2 (ENSMAUG00000015081) #22	H2-Ob (ENSMAUG00000007698) #23	H2-Ab1 (ENSMAUG00000020395) #26	H2-Aa (ENSMAUG00000003363) #25	H2-Eb2 (ENSMAUG00000018151) #28	Btnl2 (ENSMAUG00000003530)	Btnl1 (ENSMAUG00000016817)	ENSMAUG00000015609 #18	ENSMAUG00000009410	Notch4 (ENSMAUG00000015895)	Gpsm3 (ENSMAUG00000013374)	Pbx2 (ENSMAUG00000003275)	Ager (ENSMAUG00000001006)	Rnf5 (ENSMAUG00000000684)	Agpat1 (ENSMAUG00000011278)	Egfl8 (ENSMAUG00000013647)
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00390000008815	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000154993.l #28	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00940000162450 #18	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b
Prairie vole	MODERN SPECIES	352	Vps52 (ENSMOCG00000004229)	ENSMOCG00000014473	Ring1 (ENSMOCG00000020973)	Hsd17b8 (ENSMOCG00000001695)	Slc39a7 (ENSMOCG00000019993)	Rxrb (ENSMOCG00000000374)	Col11a2 (ENSMOCG00000016852)	ENSMOCG00000010963	H2-Oa (ENSMOCG00000020236)	Brd2 (ENSMOCG00000016368)	H2-DMa (ENSMOCG00000002744)	ENSMOCG00000022309	Psmb9 (ENSMOCG00000005369) #19	Tap1 (ENSMOCG00000019762) #20	Psmb8 (ENSMOCG00000014719) #21	Tap2 (ENSMOCG00000022898) #22	H2-Ob (ENSMOCG00000008562) #23	H2-Ab1 (ENSMOCG00000008439) #26	ENSMOCG00000013355 #25	ENSMOCG00000017941 #28	ENSMOCG00000019721	H2-Ea (ENSMOCG00000008786) #30	Btnl2 (ENSMOCG00000014437)	Btnl1 (ENSMOCG00000018715)	ENSMOCG00000011431 #18	Rnf39 (ENSMOCG00000015333)	Ppp1r11 (ENSMOCG00000002207)	Polr1h (ENSMOCG00000008537)	Polr1has (ENSMOCG00000015745)	H2-M5 (ENSMOCG00000004410)	Mog (ENSMOCG00000019437)
Northern American deer mouse	MODERN SPECIES	13	ENSPEMG00000024622	Ring1 (ENSPEMG00000019238)	Hsd17b8 (ENSPEMG00000012925)	Slc39a7 (ENSPEMG00000003403)	Rxrb (ENSPEMG00000018454)	Col11a2 (ENSPEMG00000016918)	ENSPEMG00000026148	ENSPEMG00000015442	H2-Oa (ENSPEMG00000011158)	Brd2 (ENSPEMG00000018138)	H2-DMa (ENSPEMG00000013203)	ENSPEMG00000018040	Psmb9 (ENSPEMG00000009609) #19	Tap1 (ENSPEMG00000012461) #20	Psmb8 (ENSPEMG00000012170) #21	Tap2 (ENSPEMG00000010503) #22	H2-Ob (ENSPEMG00000001796) #23	ENSPEMG00000012719 #26	ENSPEMG00000007095 #25	ENSPEMG00000015401 #26	ENSPEMG00000012679 #25	H2-Eb1 (ENSPEMG00000002889)	H2-Eb2 (ENSPEMG00000006456) #28	H2-Ea (ENSPEMG00000008261) #30	Btnl2 (ENSPEMG00000007431)	Btnl1 (ENSPEMG00000008094)	ENSPEMG00000028515 #28	ENSPEMG00000011748 #18	ENSPEMG00000026840 #18	ENSPEMG00000026496 #18	Notch4 (ENSPEMG00000015181)
Murinae	ANCESTRAL SPECIES	18	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162390	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450 #18	ENSGT00940000163287	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566
Mus	ANCESTRAL SPECIES	16	ENSGT00390000008815	ENSGT00980000198488.m.a.b.a.b.a.a.a.c	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450.f #18	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000008815	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381.h	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450.f #18	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566	ENSGT00390000014107.a.b.c.a
Mus_B	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381.g	ENSGT00940000160381.h	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450.e #18	ENSGT00940000162450.f #18	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566
Mus_C	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162498	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381.g	ENSGT00940000160381.h	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #26	ENSGT00940000161821 #25	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000162079	ENSGT00530000064839	ENSGT00940000162450.e #18	ENSGT00940000162450.f #18	ENSGT00390000002471	ENSGT00940000160293	ENSGT00890000139566
Steppe mouse	MODERN SPECIES	2564	ENSMSIG00000012243	Ring1 (ENSMSIG00000012190)	ENSMSIG00000012153	Slc39a7 (ENSMSIG00000012137)	Rxrb (ENSMSIG00000012091)	Col11a2 (ENSMSIG00000011347)	ENSMSIG00000011214	H2-Oa (ENSMSIG00000011198)	Brd2 (ENSMSIG00000011118)	H2-DMa (ENSMSIG00000011088)	H2-DMb1 (ENSMSIG00000011055)	Psmb9 (ENSMSIG00000011042) #19	ENSMSIG00000011012 #20	Psmb8 (ENSMSIG00000010986) #21	ENSMSIG00000010972	Tap2 (ENSMSIG00000010919) #22	H2-Ob (ENSMSIG00000010868) #23	ENSMSIG00000010843 #26	H2-Aa (ENSMSIG00000010823) #25	ENSMSIG00000010807	H2-Eb2 (ENSMSIG00000010788) #28	H2-Ea (ENSMSIG00000010776) #30	Btnl2 (ENSMSIG00000010760)	Btnl1 (ENSMSIG00000010748)	ENSMSIG00000010738	Tsbp1 (ENSMSIG00000010478)	Btnl4 (ENSMSIG00000010440) #18	ENSMSIG00000010410 #18
spretus	MODERN SPECIES	8	B3galt4 (MGP_SPRETEiJ_G0022339)	MGP_SPRETEiJ_G0022340	Ring1 (MGP_SPRETEiJ_G0022342)	Hsd17b8 (MGP_SPRETEiJ_G0022343)	Slc39a7 (MGP_SPRETEiJ_G0022344)	Rxrb (MGP_SPRETEiJ_G0022345)	Col11a2 (MGP_SPRETEiJ_G0022346)	H2-Oa (MGP_SPRETEiJ_G0022347)	Brd2 (MGP_SPRETEiJ_G0022348)	H2-DMa (MGP_SPRETEiJ_G0022349)	MGP_SPRETEiJ_G0022350	H2-DMb2 (MGP_SPRETEiJ_G0022351)	Psmb9 (MGP_SPRETEiJ_G0022352) #19	Tap1 (MGP_SPRETEiJ_G0022353) #20	Psmb8 (MGP_SPRETEiJ_G0022354) #21	Tap2 (MGP_SPRETEiJ_G0022355) #22	MGP_SPRETEiJ_G0022356	H2-Ob (MGP_SPRETEiJ_G0022357) #23	H2-Ab1 (MGP_SPRETEiJ_G0022358) #26	H2-Aa (MGP_SPRETEiJ_G0022359) #25	MGP_SPRETEiJ_G0022360	H2-Eb2 (MGP_SPRETEiJ_G0022361) #28	Btnl2 (MGP_SPRETEiJ_G0022362)	Btnl1 (MGP_SPRETEiJ_G0022363)	Tsbp1 (MGP_SPRETEiJ_G0022364)	MGP_SPRETEiJ_G0022366 #18	Notch4 (MGP_SPRETEiJ_G0022367)	Gpsm3 (MGP_SPRETEiJ_G0022368)	Pbx2 (MGP_SPRETEiJ_G0022369)	Ager (MGP_SPRETEiJ_G0022370)	Rnf5 (MGP_SPRETEiJ_G0022371)
Mouse	MODERN SPECIES	8	Vps52 (ENSMUSG00000024319)	H2-K1 (ENSMUSG00000061232)	Ring1 (ENSMUSG00000024325)	Hsd17b8 (ENSMUSG00000073422)	Slc39a7 (ENSMUSG00000024327)	Rxrb (ENSMUSG00000039656)	Col11a2 (ENSMUSG00000024330)	H2-Oa (ENSMUSG00000024334)	Brd2 (ENSMUSG00000024335)	H2-DMa (ENSMUSG00000037649)	H2-DMb2 (ENSMUSG00000037548)	H2-DMb1 (ENSMUSG00000079547)	Psmb9 (ENSMUSG00000096727) #19	Tap1 (ENSMUSG00000037321) #20	Psmb8 (ENSMUSG00000024338) #21	Tap2 (ENSMUSG00000024339) #22	H2-Ob (ENSMUSG00000041538) #23	H2-Ab1 (ENSMUSG00000073421) #26	H2-Aa (ENSMUSG00000036594) #25	H2-Eb1 (ENSMUSG00000060586)	H2-Eb2 (ENSMUSG00000067341) #28	H2-Ea (ENSMUSG00000036322) #30	Btnl2 (ENSMUSG00000024340)	Btnl1 (ENSMUSG00000062638)	Tsbp1 (ENSMUSG00000057246)	Btnl4 (ENSMUSG00000058435) #18	Btnl6 (ENSMUSG00000092618) #18	Notch4 (ENSMUSG00000015468)	Gpsm3 (ENSMUSG00000034786)	Pbx2 (ENSMUSG00000034673)	Ager (ENSMUSG00000015452)
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021434	MGP_CAROLIEiJ_G0021435	Ring1 (MGP_CAROLIEiJ_G0021436)	Hsd17b8 (MGP_CAROLIEiJ_G0021437)	Slc39a7 (MGP_CAROLIEiJ_G0021438)	Rxrb (MGP_CAROLIEiJ_G0021439)	Col11a2 (MGP_CAROLIEiJ_G0021440)	H2-Oa (MGP_CAROLIEiJ_G0021441)	Brd2 (MGP_CAROLIEiJ_G0021442)	H2-DMa (MGP_CAROLIEiJ_G0021443)	MGP_CAROLIEiJ_G0021444	MGP_CAROLIEiJ_G0021445	Psmb9 (MGP_CAROLIEiJ_G0021446) #19	Tap1 (MGP_CAROLIEiJ_G0021447) #20	Psmb8 (MGP_CAROLIEiJ_G0021448) #21	Tap2 (MGP_CAROLIEiJ_G0021449) #22	MGP_CAROLIEiJ_G0021450	H2-Ob (MGP_CAROLIEiJ_G0021451) #23	H2-Ab1 (MGP_CAROLIEiJ_G0021452) #26	H2-Aa (MGP_CAROLIEiJ_G0021453) #25	MGP_CAROLIEiJ_G0021454	H2-Eb2 (MGP_CAROLIEiJ_G0021455) #28	Btnl2 (MGP_CAROLIEiJ_G0021456)	Btnl1 (MGP_CAROLIEiJ_G0021457)	Tsbp1 (MGP_CAROLIEiJ_G0021458)	Btnl6 (MGP_CAROLIEiJ_G0021459) #18	MGP_CAROLIEiJ_G0021460 #18	Notch4 (MGP_CAROLIEiJ_G0021461)	Gpsm3 (MGP_CAROLIEiJ_G0021462)	Pbx2 (MGP_CAROLIEiJ_G0021463)	Ager (MGP_CAROLIEiJ_G0021464)
Shrew mouse	MODERN SPECIES	9	Pfdn6 (MGP_PahariEiJ_G0020430) #7	Wdr46 (MGP_PahariEiJ_G0020431)	B3galt4 (MGP_PahariEiJ_G0020432)	MGP_PahariEiJ_G0020433	Ring1 (MGP_PahariEiJ_G0020434)	Hsd17b8 (MGP_PahariEiJ_G0020435)	Slc39a7 (MGP_PahariEiJ_G0020436)	Rxrb (MGP_PahariEiJ_G0020437)	Col11a2 (MGP_PahariEiJ_G0020438)	H2-Oa (MGP_PahariEiJ_G0020439)	Brd2 (MGP_PahariEiJ_G0020440)	H2-DMa (MGP_PahariEiJ_G0020441)	Psmb9 (MGP_PahariEiJ_G0020442) #19	Tap1 (MGP_PahariEiJ_G0020443) #20	Psmb8 (MGP_PahariEiJ_G0020444) #21	Tap2 (MGP_PahariEiJ_G0020445) #22	MGP_PahariEiJ_G0020446	H2-Ob (MGP_PahariEiJ_G0020447) #23	H2-Ab1 (MGP_PahariEiJ_G0020448) #26	H2-Aa (MGP_PahariEiJ_G0020449) #25	MGP_PahariEiJ_G0020450	H2-Eb2 (MGP_PahariEiJ_G0020451) #28	Btnl2 (MGP_PahariEiJ_G0020452)	Btnl1 (MGP_PahariEiJ_G0020453)	Tsbp1 (MGP_PahariEiJ_G0020454)	MGP_PahariEiJ_G0020455 #18	Notch4 (MGP_PahariEiJ_G0020456)	Gpsm3 (MGP_PahariEiJ_G0020457)	Pbx2 (MGP_PahariEiJ_G0020458)	Ager (MGP_PahariEiJ_G0020459)	Agpat1 (MGP_PahariEiJ_G0020461)
Rat	MODERN SPECIES	12	Vps52 (ENSRNOG00000000470)	Ring1 (ENSRNOG00000000467)	Hsd17b8 (ENSRNOG00000000466)	Slc39a7 (ENSRNOG00000000465)	Rxrb (ENSRNOG00000000464)	Col11a2 (ENSRNOG00000000463)	RT1-Hb-ps1 (ENSRNOG00000061936)	RT1-Ha (ENSRNOG00000045908)	RT1-DOa (ENSRNOG00000026762)	Brd2 (ENSRNOG00000000461)	RT1-DMa (ENSRNOG00000066773)	RT1-DMb (ENSRNOG00000049491)	Psmb9 (ENSRNOG00000000459) #19	Tap1 (ENSRNOG00000000457) #20	Psmb8 (ENSRNOG00000000456) #21	Tap2 (ENSRNOG00000000455) #22	RT1-DOb (ENSRNOG00000000454) #23	RT1-Bb (ENSRNOG00000032708) #26	RT1-Ba (ENSRNOG00000000451) #25	RT1-Db1 (ENSRNOG00000033215)	RT1-Db2 (ENSRNOG00000030431)	RT1-Da (ENSRNOG00000032844) #30	Btnl2 (ENSRNOG00000028541)	Btnl3 (ENSRNOG00000039396)	Tsbp1 (ENSRNOG00000039398)	Btn3a2 (ENSRNOG00000068592) #18	Btnl5 (ENSRNOG00000047304) #18	AABR07044388.4 (ENSRNOG00000052710) #18	Btnl7 (ENSRNOG00000000446) #18	Btnl8 (ENSRNOG00000064738) #18	Btnl4 (ENSRNOG00000068088) #18
Lesser Egyptian jerboa	MODERN SPECIES	41	Rps18 (ENSJJAG00000018899)	Vps52 (ENSJJAG00000020884)	Ring1 (ENSJJAG00000022246)	Hsd17b8 (ENSJJAG00000021794)	Slc39a7 (ENSJJAG00000014121)	Rxrb (ENSJJAG00000004710)	Col11a2 (ENSJJAG00000010448)	ENSJJAG00000023713	H2-Oa (ENSJJAG00000000542)	Brd2 (ENSJJAG00000010183)	H2-DMa (ENSJJAG00000012555)	ENSJJAG00000004664	Psmb9 (ENSJJAG00000022884) #19	Tap1 (ENSJJAG00000022861) #20	Psmb8 (ENSJJAG00000023598) #21	Tap2 (ENSJJAG00000004300) #22	ENSJJAG00000003836	H2-Ob (ENSJJAG00000022338) #23
Kangaroo rat	MODERN SPECIES	519	Vps52 (ENSDORG00000013822)	Ring1 (ENSDORG00000013820)	Hsd17b8 (ENSDORG00000013819)	Slc39a7 (ENSDORG00000013818)	Rxrb (ENSDORG00000013816)	Col11a2 (ENSDORG00000013815)	ENSDORG00000024606	ENSDORG00000004500	H2-Oa (ENSDORG00000004499)	Brd2 (ENSDORG00000004497)	ENSDORG00000005173	ENSDORG00000005172	Psmb9 (ENSDORG00000006231) #19	Tap1 (ENSDORG00000029698) #20	Psmb8 (ENSDORG00000028592) #21	Tap2 (ENSDORG00000008311) #22	ENSDORG00000008310 #23	ENSDORG00000011904	ENSDORG00000006991 #28	ENSDORG00000029602 #28	ENSDORG00000024908	H2-Ea (ENSDORG00000014782) #30	ENSDORG00000028297	ENSDORG00000009936	Gpsm3 (ENSDORG00000025609)	Pbx2 (ENSDORG00000009932)	ENSDORG00000009930	Rnf5 (ENSDORG00000023271)	Agpat1 (ENSDORG00000009925)	Egfl8 (ENSDORG00000019824)	Ppt2 (ENSDORG00000029200)
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000160076	ENSGT00940000159208.B	ENSGT00940000159762	ENSGT00940000162498	ENSGT00940000162390	ENSGT00940000162112	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821 #25	ENSGT00940000154993 #28	ENSGT00940000154723.b #26	ENSGT00940000155371	ENSGT00940000160997 #30	ENSGT00940000162484	ENSGT00940000164957
Rabbit	MODERN SPECIES	3	B3GALT4 (ENSOCUG00000010550)	ENSOCUG00000010546	VPS52 (ENSOCUG00000010533)	HSD17B8 (ENSOCUG00000020995)	SLC39A7 (ENSOCUG00000011598)	RXRB (ENSOCUG00000011590)	COL11A2 (ENSOCUG00000016497)	HLA-DPB1 (ENSOCUG00000008721)	ENSOCUG00000003319	BRD2 (ENSOCUG00000003097)	HLA-DMA (ENSOCUG00000022573)	HLA-DMB (ENSOCUG00000026567)	ENSOCUG00000002139 #19	TAP1 (ENSOCUG00000002135) #20	PSMB8 (ENSOCUG00000002131) #21	TAP2 (ENSOCUG00000002489) #22	HLA-DOB (ENSOCUG00000029437) #23	ENSOCUG00000002480 #25	HLA-DQB1 (ENSOCUG00000002485) #26	ENSOCUG00000030453	ENSOCUG00000029731 #28	HLA-DRA (ENSOCUG00000009103) #30	ENSOCUG00000025822	ENSOCUG00000006769	ENSOCUG00000021762 #17	SFTA2 (ENSOCUG00000035950) #16	GTF2H4 (ENSOCUG00000021496)	DDR1 (ENSOCUG00000016487)	IER3 (ENSOCUG00000016451)	FLOT1 (ENSOCUG00000017308)	TUBB (ENSOCUG00000002187)
Pika	MODERN SPECIES	4582																ENSOPRG00000001644 #22	ENSOPRG00000001634 #23