Eutheria ANCESTRAL SPECIES 9 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 Boreoeutheria ANCESTRAL SPECIES 7 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993 #26 ENSGT00940000155371 ENSGT00940000161847 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 Euarchontoglires ANCESTRAL SPECIES 7 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000161821 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000154993 #26 ENSGT00940000155371 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 Primates ANCESTRAL SPECIES 5 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000154993 #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b Haplorrhini ANCESTRAL SPECIES 2 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000154993 #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00530000064839 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b ENSGT00940000162975 ENSGT00940000155779.a.b Simiiformes ANCESTRAL SPECIES 5 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.a #17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000162892.a.a #25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00530000064839 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b ENSGT00940000162975 ENSGT00940000155779.a.b Catarrhini ANCESTRAL SPECIES 5 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.a #17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n ##24 ENSGT00940000162892.a.b ##25 ENSGT00940000154723.b.m.a #24 ENSGT00940000162892.a.a #25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b ##26 ENSGT00940000154993.m.a.a #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00530000064839 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 Cercopithecidae ANCESTRAL SPECIES 4 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.a #17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.m.a #24 ENSGT00940000162892.a.a.b #25 ENSGT00940000154723.b.m.b ##24 ENSGT00940000162892.a.a.a ##25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b ##26 ENSGT00940000154993.m.a.a #26 ENSGT00940000160997 ENSGT00530000064839 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b Cercopithecinae ANCESTRAL SPECIES 6 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b.qc.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.a #17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.m.a #24 ENSGT00940000162892.a.a.b #25 ENSGT00940000154993.m.a.a.a #26 ENSGT00940000154723.b.m.b ##24 ENSGT00940000162892.a.a.a ##25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.a.a.b.a.b ##26 ENSGT00940000154993.m.b ##26 ENSGT00940000154993.m.a.a.b.b ##26 ENSGT00940000160997 ENSGT00530000064839 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 Cercopithecinae_a ANCESTRAL SPECIES 6 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b.qc.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.a #17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.m.a #24 ENSGT00940000162892.a.a.b #25 ENSGT00940000154993.m.a.a.a #26 ENSGT00940000154723.b.m.b ##24 ENSGT00940000162892.a.a.a ##25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b.a.b ##26 ENSGT00940000154993.m.a.a.b.b ##26 ENSGT00940000160997 ENSGT00530000064839 ENSGT00950000183123.h.b ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 Macaca ANCESTRAL SPECIES 9 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498.k #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b.qc.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.m.a #24 ENSGT00940000162892.a.a.b #25 ENSGT00940000154993.m.a.a.a #26 ENSGT00940000154993.m.b.a.b ##26 ENSGT00940000154993.m.a.a.b.b ##26 ENSGT00940000160997 ENSGT00530000064839 ENSGT00950000183123.h.b ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b Pig-tailed macaque MODERN SPECIES 528 RXRB (ENSMNEG00000034252) #7 COL11A2 (ENSMNEG00000022236) #8 ENSMNEG00000010287 #9 HLA-DPB1 (ENSMNEG00000029725) #10 HLA-DPA1 (ENSMNEG00000040889) #11 HLA-DOA (ENSMNEG00000008508) #12 BRD2 (ENSMNEG00000030743) #13 ENSMNEG00000039758 #14 HLA-DMA (ENSMNEG00000032904) #15 HLA-DMB (ENSMNEG00000044507) #16 ENSMNEG00000035658 #17 ENSMNEG00000036723 #18 PSMB9 (ENSMNEG00000038721) #19 TAP1 (ENSMNEG00000041518) #20 PSMB8 (ENSMNEG00000044942) #21 TAP2 (ENSMNEG00000041413) #22 HLA-DOB (ENSMNEG00000043598) #23 HLA-DQB1 (ENSMNEG00000027969) #24 HLA-DQA1 (ENSMNEG00000038603) #25 ENSMNEG00000044119 #26 ENSMNEG00000018617 #27 ENSMNEG00000020869 #28 Macaca_a ANCESTRAL SPECIES 9 ENSGT00390000012691.c.b.m.b ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160076 ENSGT00940000160668 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162498.k #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b.qc.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154993.m.a.b ##26 ENSGT00940000160997 ENSGT00530000064839 ENSGT00950000183123.h.b ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b ENSGT00940000162975 ENSGT00940000155779.a.b ENSGT00940000162382 ENSGT00920000149187 Crab-eating macaque MODERN SPECIES 14 WDR46 (ENSMFAG00000000475) B3GALT4 (ENSMFAG00000041942) RPS18 (ENSMFAG00000032199) COL11A2 (ENSMFAG00000017491) #8 RING1 (ENSMFAG00000002610) SLC39A7 (ENSMFAG00000038848) HSD17B8 (ENSMFAG00000037332) RXRB (ENSMFAG00000003583) #7 HLA-DOA (ENSMFAG00000058905) #12 BRD2 (ENSMFAG00000037520) #13 ENSMFAG00000060572 #14 HLA-DMA (ENSMFAG00000042109) #15 HLA-DMB (ENSMFAG00000004018) #16 PSMB9 (ENSMFAG00000038128) #19 TAP1 (ENSMFAG00000041369) #20 TAP2 (ENSMFAG00000037139) #22 HLA-DOB (ENSMFAG00000003652) #23 HLA-DQA1 (ENSMFAG00000002949) ##25 ENSMFAG00000054107 HLA-DRB5 (ENSMFAG00000000676) ##26 ENSMFAG00000058962 #28 HLA-DRA (ENSMFAG00000032157) ENSMFAG00000033140 ENSMFAG00000049929 ENSMFAG00000033054 RNF5 (ENSMFAG00000033282) ENSMFAG00000059430 GPSM3 (ENSMFAG00000044173) PBX2 (ENSMFAG00000045367) AGER (ENSMFAG00000038314) AGPAT1 (ENSMFAG00000042426) Rhesus MODERN SPECIES 14 VPS52 (ENSMMUG00000003864) ENSMMUG00000003867 RING1 (ENSMMUG00000003863) SLC39A7 (ENSMMUG00000003859) HSD17B8 (ENSMMUG00000003861) RXRB (ENSMMUG00000003858) #7 COL11A2 (ENSMMUG00000003850) #8 ENSMMUG00000019371 #11 ENSMMUG00000041095 MAMU-DOA (ENSMMUG00000015734) #12 BRD2 (ENSMMUG00000023138) #13 MAMU-DMB (ENSMMUG00000022626) #16 ENSMMUG00000063291 #18 PSMB9 (ENSMMUG00000011304) #19 PSMB8 (ENSMMUG00000011301) #20 MAMU-DOB (ENSMMUG00000011293) #22 ENSMMUG00000054826 MAMU-DRB1 (ENSMMUG00000029799) ##26 MAMU-DRA (ENSMMUG00000039082) TSBP1 (ENSMMUG00000018425) ENSMMUG00000029402 NOTCH4 (ENSMMUG00000018461) GPSM3 (ENSMMUG00000018459) PBX2 (ENSMMUG00000018456) AGER (ENSMMUG00000018442) RNF5 (ENSMMUG00000018438) AGPAT1 (ENSMMUG00000018434) EGFL8 (ENSMMUG00000018432) PRRT1 (ENSMMUG00000016647) FKBPL (ENSMMUG00000015230) ATF6B (ENSMMUG00000015229) Cercopithecinae_b ANCESTRAL SPECIES 18 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498.m #11 ENSGT00940000162498.n #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b.qc.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.a #17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353.h #23 ENSGT00940000154723.b.m.a #24 ENSGT00940000162892.a.a.b #25 ENSGT00940000155046.t ENSGT00390000015391 ENSGT00940000153251.b.a ENSGT00530000064866 ENSGT00390000013322 ENSGT00730000111474 ENSGT00390000010291 ENSGT00960000186815 ENSGT00940000164570 ENSGT00940000164618 ENSGT00390000016847 ENSGT00390000011767 Olive baboon MODERN SPECIES 16 RING1 (ENSPANG00000023635) HSD17B8 (ENSPANG00000023634) SLC39A7 (ENSPANG00000023633) RXRB (ENSPANG00000018527) #7 COL11A2 (ENSPANG00000009194) #8 HLA-DPB1 (ENSPANG00000005764) #9 HLA-DPA1 (ENSPANG00000018967) #11 HLA-DOA (ENSPANG00000031879) #12 BRD2 (ENSPANG00000019626) #13 ENSPANG00000035618 #14 HLA-DMA (ENSPANG00000026492) #15 HLA-DMB (ENSPANG00000019593) #16 PSMB9 (ENSPANG00000033974) #19 TAP1 (ENSPANG00000024178) #20 PSMB8 (ENSPANG00000016588) #21 TAP2 (ENSPANG00000015103) #22 HLA-DOB (ENSPANG00000016388) #23 ENSPANG00000044498 ENSPANG00000007627 TCF19 (ENSPANG00000024035) CCHCR1 (ENSPANG00000017010) ENSPANG00000049186 PSORS1C2 (ENSPANG00000024487) CDSN (ENSPANG00000047914) C6orf15 (ENSPANG00000011097) ENSPANG00000031147 ENSPANG00000009406 SFTA2 (ENSPANG00000030986) VARS2 (ENSPANG00000018481) GTF2H4 (ENSPANG00000026494) DDR1 (ENSPANG00000024488) Cercopithecinae_d ANCESTRAL SPECIES 197 ENSGT00940000162390 #9 ENSGT00940000162498.n #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b.qc.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.a #17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353.h #23 ENSGT00940000154723.b.m.a #24 ENSGT00940000162892.a.a.b #25 Drill MODERN SPECIES 1605 ENSMLEG00000035946 #11 HLA-DOA (ENSMLEG00000037836) #12 ENSMLEG00000042296 #13 ENSMLEG00000035779 #14 HLA-DMA (ENSMLEG00000039758) #15 HLA-DMB (ENSMLEG00000032921) #16 ENSMLEG00000033307 #17 PSMB9 (ENSMLEG00000009919) #19 TAP1 (ENSMLEG00000042023) #20 PSMB8 (ENSMLEG00000028732) #21 TAP2 (ENSMLEG00000040111) #22 HLA-DOB (ENSMLEG00000044332) #23 Sooty mangabey MODERN SPECIES 451 HLA-DPB1 (ENSCATG00000038170) #9 ENSCATG00000024393 #11 HLA-DOA (ENSCATG00000035917) #12 ENSCATG00000034965 #13 ENSCATG00000037729 #14 HLA-DMA (ENSCATG00000030669) #15 HLA-DMB (ENSCATG00000024024) #16 ENSCATG00000037243 #17 PSMB9 (ENSCATG00000041856) #19 TAP1 (ENSCATG00000033980) #20 PSMB8 (ENSCATG00000024878) #21 TAP2 (ENSCATG00000038838) #22 ENSCATG00000036138 #23 HLA-DQB1 (ENSCATG00000030073) #24 HLA-DQA1 (ENSCATG00000012156) #25 Rhinopithecus ANCESTRAL SPECIES 177 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b.nc #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.a.a #17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n ##24 ENSGT00940000154723.b.m.b ##24 ENSGT00940000162892.a.a.a ##25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b ##26 ENSGT00940000154993.m.a.a #26 ENSGT00940000160997 ENSGT00530000064839 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b Golden snub-nosed monkey MODERN SPECIES 1416 HLA-DOA (ENSRROG00000000054) #12 ENSRROG00000012557 #13 ENSRROG00000034857 #14 HLA-DMA (ENSRROG00000037828) #15 HLA-DMB (ENSRROG00000039771) #16 ENSRROG00000012955 ##17 PSMB9 (ENSRROG00000005028) #19 TAP1 (ENSRROG00000021353) #20 PSMB8 (ENSRROG00000019326) #21 TAP2 (ENSRROG00000033497) #22 Black snub-nosed monkey MODERN SPECIES 1396 HLA-DOA (ENSRBIG00000041291) #12 ENSRBIG00000044329 #13 ENSRBIG00000033102 #14 HLA-DMA (ENSRBIG00000027897) #15 HLA-DMB (ENSRBIG00000031730) #16 ENSRBIG00000031206 #17 PSMB9 (ENSRBIG00000042419) #19 TAP1 (ENSRBIG00000038729) #20 PSMB8 (ENSRBIG00000032621) #21 TAP2 (ENSRBIG00000042752) #22 HLA-DOB (ENSRBIG00000039119) #23 ENSRBIG00000031872 ##24 HLA-DQA1 (ENSRBIG00000031838) ##25 Hominoidea ANCESTRAL SPECIES 4 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.b.a.a.a ##17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n ##24 ENSGT00940000162892.a.b ##25 ENSGT00940000154723.b.m.a #24 ENSGT00940000162892.a.a #25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b ##26 ENSGT00940000154993.m.a.a #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00530000064839 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 Hominidae ANCESTRAL SPECIES 5 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.b.a.a.a ##17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n ##24 ENSGT00940000162892.a.b ##25 ENSGT00940000154723.b.m.a #24 ENSGT00940000162892.a.a #25 ENSGT00940000154993.m.a.a #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00530000064839 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b Homo/Pan/Gorilla group ANCESTRAL SPECIES 4 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.b.a.a.a ##17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n ##24 ENSGT00940000162892.a.b ##25 ENSGT00940000154723.b.m.a #24 ENSGT00940000162892.a.a #25 ENSGT00940000154993.m.a.a #26 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b ##26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00530000064839 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 Gorilla MODERN SPECIES 19 RING1 (ENSGGOG00000009842) HSD17B8 (ENSGGOG00000009838) SLC39A7 (ENSGGOG00000009830) RXRB (ENSGGOG00000009823) #7 COL11A2 (ENSGGOG00000009799) #8 HLA-DPB1 (ENSGGOG00000013630) #9 HLA-DPA1 (ENSGGOG00000013625) #11 HLA-DOA (ENSGGOG00000010653) #12 ENSGGOG00000005838 #14 BRD2 (ENSGGOG00000043461) #13 ENSGGOG00000005835 #15 HLA-DMB (ENSGGOG00000022404) #16 PSMB9 (ENSGGOG00000010965) #19 TAP1 (ENSGGOG00000010958) #20 PSMB8 (ENSGGOG00000010953) #21 TAP2 (ENSGGOG00000010941) #22 HLA-DOB (ENSGGOG00000043194) #23 HLA-DQB2 (ENSGGOG00000014413) ##24 ENSGGOG00000037744 ##25 HLA-DQB1 (ENSGGOG00000004252) #24 HLA-DQA1 (ENSGGOG00000013538) #25 ENSGGOG00000000700 ##26 HLA-DRB5 (ENSGGOG00000037929) ##26 HLA-DRA (ENSGGOG00000009861) BTNL2 (ENSGGOG00000009855) TSBP1 (ENSGGOG00000040681) NOTCH4 (ENSGGOG00000002332) GPSM3 (ENSGGOG00000002329) PBX2 (ENSGGOG00000002325) AGER (ENSGGOG00000002323) RNF5 (ENSGGOG00000002320) Homo/Pan group ANCESTRAL SPECIES 5 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.b.a.a.a ##17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n ##24 ENSGT00940000162892.a.b ##25 ENSGT00940000154723.b.m.a #24 ENSGT00940000162892.a.a #25 ENSGT00940000154993.m.a.a #26 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b ##26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00530000064839 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 Pan ANCESTRAL SPECIES 5 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.b.a.a.a ##17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n ##24 ENSGT00940000162892.a.b ##25 ENSGT00940000154723.b.m.a #24 ENSGT00940000162892.a.a #25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b ##26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00530000064839 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b.w Chimpanzee MODERN SPECIES 19 RING1 (ENSPTRG00000018037) HSD17B8 (ENSPTRG00000018036) SLC39A7 (ENSPTRG00000018035) RXRB (ENSPTRG00000018034) #7 COL11A2 (ENSPTRG00000018033) #8 HLA-DPB1 (ENSPTRG00000018030) #9 HLA-DPA1 (ENSPTRG00000018029) #11 HLA-DOA (ENSPTRG00000018028) #12 ENSPTRG00000018027 #14 BRD2 (ENSPTRG00000042676) #13 ENSPTRG00000018026 #15 PATR-DMB (ENSPTRG00000018025) #16 PSMB9 (ENSPTRG00000018024) #19 TAP1 (ENSPTRG00000018023) #20 PSMB8 (ENSPTRG00000018022) #21 TAP2 (ENSPTRG00000018021) #22 PATR-DOB (ENSPTRG00000018020) #23 HLA-DQB2 (ENSPTRG00000023404) ##24 HLA-DQA2 (ENSPTRG00000034186) ##25 HLA-DQB1 (ENSPTRG00000018018) #24 HLA-DQA1 (ENSPTRG00000018017) #25 PATR-DQB1 (ENSPTRG00000018001) #26 ENSPTRG00000051243 ##26 PATR-DRB5 (ENSPTRG00000023735) ##26 PATR-DRA (ENSPTRG00000018016) BTNL2 (ENSPTRG00000043663) ENSPTRG00000044399 TSBP1 (ENSPTRG00000018014) NOTCH4 (ENSPTRG00000034379) GPSM3 (ENSPTRG00000023968) PBX2 (ENSPTRG00000018012) Bonobo MODERN SPECIES 19 HSD17B8 (ENSPPAG00000032286) SLC39A7 (ENSPPAG00000028225) RXRB (ENSPPAG00000038590) #7 COL11A2 (ENSPPAG00000013099) #8 HLA-DPB1 (ENSPPAG00000041449) #9 HLA-DPA1 (ENSPPAG00000031863) #11 HLA-DOA (ENSPPAG00000036361) #12 BRD2 (ENSPPAG00000016843) #13 ENSPPAG00000027710 #14 HLA-DMA (ENSPPAG00000041639) #15 HLA-DMB (ENSPPAG00000037856) #16 ENSPPAG00000033020 ##17 PSMB9 (ENSPPAG00000038623) #19 TAP1 (ENSPPAG00000029436) #20 PSMB8 (ENSPPAG00000042377) #21 TAP2 (ENSPPAG00000033938) #22 HLA-DOB (ENSPPAG00000027428) #23 HLA-DQB2 (ENSPPAG00000041341) ##24 HLA-DQA2 (ENSPPAG00000038014) ##25 HLA-DQB1 (ENSPPAG00000041275) #24 ENSPPAG00000019881 #25 ENSPPAG00000039594 ##26 ENSPPAG00000036652 ##26 ENSPPAG00000029790 ##26 HLA-DRA (ENSPPAG00000041818) ENSPPAG00000038384 ENSPPAG00000034948 NOTCH4 (ENSPPAG00000030396) GPSM3 (ENSPPAG00000035669) PBX2 (ENSPPAG00000039908) AGER (ENSPPAG00000028489) Human MODERN SPECIES 18 RING1 (ENSG00000204227) HSD17B8 (ENSG00000204228) SLC39A7 (ENSG00000112473) RXRB (ENSG00000204231) #7 COL11A2 (ENSG00000204248) #8 HLA-DPB1 (ENSG00000223865) #9 HLA-DPA1 (ENSG00000231389) #11 HLA-DOA (ENSG00000204252) #12 BRD2 (ENSG00000204256) #13 HLA-DMA (ENSG00000204257) #15 ENSG00000248993 HLA-DMB (ENSG00000242574) #16 TAP1 (ENSG00000168394) #20 PSMB9 (ENSG00000240065) #19 PSMB8 (ENSG00000204264) #21 TAP2 (ENSG00000204267) #22 ENSG00000250264 HLA-DOB (ENSG00000241106) #23 HLA-DQB2 (ENSG00000232629) ##24 HLA-DQA2 (ENSG00000237541) ##25 HLA-DQB1 (ENSG00000179344) #24 HLA-DQA1 (ENSG00000196735) #25 HLA-DRB1 (ENSG00000196126) #26 HLA-DRB5 (ENSG00000198502) ##26 HLA-DRA (ENSG00000204287) BTNL2 (ENSG00000204290) TSBP1 (ENSG00000204296) NOTCH4 (ENSG00000204301) GPSM3 (ENSG00000213654) PBX2 (ENSG00000204304) AGER (ENSG00000204305) Orangutan MODERN SPECIES 19 RING1 (ENSPPYG00000017242) HSD17B8 (ENSPPYG00000017241) SLC39A7 (ENSPPYG00000017240) RXRB (ENSPPYG00000017239) #7 COL11A2 (ENSPPYG00000017238) #8 HLA-DPA1 (ENSPPYG00000017229) #11 ENSPPYG00000029571 #9 HLA-DOA (ENSPPYG00000016495) #12 BRD2 (ENSPPYG00000017228) #13 ENSPPYG00000031820 #14 ENSPPYG00000017227 #15 HLA-DMB (ENSPPYG00000017226) #16 PSMB9 (ENSPPYG00000017225) #19 TAP1 (ENSPPYG00000017224) #20 PSMB8 (ENSPPYG00000017223) #21 TAP2 (ENSPPYG00000017222) #22 HLA-DOB (ENSPPYG00000017221) #23 HLA-DQB2 (ENSPPYG00000017220) ##24 HLA-DQA2 (ENSPPYG00000017219) ##25 ENSPPYG00000017216 ##26 HLA-DRB1 (ENSPPYG00000016490) #26 HLA-DRA (ENSPPYG00000017234) BTNL2 (ENSPPYG00000017215) TSBP1 (ENSPPYG00000016489) NOTCH4 (ENSPPYG00000016488) GPSM3 (ENSPPYG00000016487) PBX2 (ENSPPYG00000016486) AGER (ENSPPYG00000016485) RNF5 (ENSPPYG00000016484) AGPAT1 (ENSPPYG00000016483) EGFL8 (ENSPPYG00000041054) Gibbon MODERN SPECIES 10 HSD17B8 (ENSNLEG00000006824) SLC39A7 (ENSNLEG00000006815) RXRB (ENSNLEG00000006809) #7 ENSNLEG00000030023 #8 HLA-DPB1 (ENSNLEG00000006801) #9 HLA-DPA1 (ENSNLEG00000034417) #11 ENSNLEG00000031675 #12 BRD2 (ENSNLEG00000006782) #13 ENSNLEG00000032110 #14 HLA-DMA (ENSNLEG00000006775) #15 HLA-DMB (ENSNLEG00000006770) #16 ENSNLEG00000032895 ##17 PSMB9 (ENSNLEG00000006757) #19 TAP1 (ENSNLEG00000006738) #20 PSMB8 (ENSNLEG00000006733) #21 TAP2 (ENSNLEG00000006714) #22 HLA-DOB (ENSNLEG00000027543) #23 HLA-DQB2 (ENSNLEG00000006713) ##24 HLA-DQA2 (ENSNLEG00000027015) ##25 HLA-DQB1 (ENSNLEG00000006693) #24 HLA-DQA1 (ENSNLEG00000032515) #25 ENSNLEG00000032832 ##26 HLA-DRA (ENSNLEG00000006686) BTNL2 (ENSNLEG00000006679) ENSNLEG00000006667 ENSNLEG00000006638 GPSM3 (ENSNLEG00000033153) PBX2 (ENSNLEG00000006632) AGER (ENSNLEG00000006604) RNF5 (ENSNLEG00000027395) AGPAT1 (ENSNLEG00000006594) Platyrrhini ANCESTRAL SPECIES 2 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b.lc #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00390000004757.`b.a #17 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.l.b #24 ENSGT00940000162892.a.a.d #25 ENSGT00940000154723.b.l.a.b #24 ENSGT00940000162892.a.a.c #25 ENSGT00940000154993.n #28 ENSGT00940000154723.b.k #24 ENSGT00940000162892.a.b ##25 ENSGT00940000154723.b.l.a.a #24 ENSGT00940000160997 ENSGT00940000162484 ENSGT00530000064839 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 Cebidae ANCESTRAL SPECIES 5 ENSGT00940000161022.b ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b.lc #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.l.b #24 ENSGT00940000162892.a.a.d #25 ENSGT00940000154723.b.l.a.b #24 ENSGT00940000162892.a.a.c #25 ENSGT00940000154993.n.a #28 Cebidae_a ANCESTRAL SPECIES 25 ENSGT00940000161022.b ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b.lc #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.l.b #24 ENSGT00940000162892.a.a.d #25 ENSGT00940000154723.b.l.a.b #24 ENSGT00940000162892.a.a.c #25 ENSGT00940000154993.n.a.b #28 Bolivian squirrel monkey MODERN SPECIES 59 LRRC1 (ENSSBOG00000035746) KLHL31 (ENSSBOG00000033630) GCLC (ENSSBOG00000023419) ELOVL5 (ENSSBOG00000034870) ENSSBOG00000021942 GCM1 (ENSSBOG00000005634) FBXO9 (ENSSBOG00000019141) CILK1 (ENSSBOG00000017283) GSTA4 (ENSSBOG00000020856) ENSSBOG00000025505 GSTA5 (ENSSBOG00000023195) TMEM14A (ENSSBOG00000022452) PSMB9 (ENSSBOG00000022067) #19 TAP1 (ENSSBOG00000027226) #20 PSMB8 (ENSSBOG00000026986) #21 TAP2 (ENSSBOG00000021205) #22 HLA-DOB (ENSSBOG00000029243) #23 ENSSBOG00000012276 #24 ENSSBOG00000035334 #25 ENSSBOG00000016392 #24 ENSSBOG00000021233 #25 ENSSBOG00000031743 #28 ENSSBOG00000032160 #28 Capuchin MODERN SPECIES 24 VPS52 (ENSCCAG00000029806) RING1 (ENSCCAG00000020672) HSD17B8 (ENSCCAG00000034063) SLC39A7 (ENSCCAG00000021481) RXRB (ENSCCAG00000015878) #7 COL11A2 (ENSCCAG00000021086) #8 HLA-DPB1 (ENSCCAG00000036491) #9 HLA-DPA1 (ENSCCAG00000035048) #11 HLA-DOA (ENSCCAG00000024211) #12 ENSCCAG00000016930 #13 HLA-DMA (ENSCCAG00000031122) #15 HLA-DMB (ENSCCAG00000030904) #16 PSMB9 (ENSCCAG00000036808) #19 TAP1 (ENSCCAG00000024218) #20 PSMB8 (ENSCCAG00000026335) #21 TAP2 (ENSCCAG00000035497) #22 HLA-DOB (ENSCCAG00000034021) #23 ENSCCAG00000028168 #24 ENSCCAG00000023824 #25 ENSCCAG00000025088 #24 HLA-DQA2 (ENSCCAG00000023549) ##25 HLA-DRB1 (ENSCCAG00000025004) #26 ENSCCAG00000024284 #28 ENSCCAG00000033580 #28 HLA-DRA (ENSCCAG00000027271) BTNL2 (ENSCCAG00000037406) TSBP1 (ENSCCAG00000034222) ENSCCAG00000029507 GPSM3 (ENSCCAG00000026910) NOTCH4 (ENSCCAG00000025076) PBX2 (ENSCCAG00000034408) Marmoset MODERN SPECIES 16 B3GALT4 (ENSCJAG00000043225) ENSCJAG00000021650 VPS52 (ENSCJAG00000021644) RING1 (ENSCJAG00000081691) ENSCJAG00000021632 SLC39A7 (ENSCJAG00000021622) RXRB (ENSCJAG00000021619) #7 COL11A2 (ENSCJAG00000021577) #8 HLA-DPB1 (ENSCJAG00000021575) #9 HLA-DPA1 (ENSCJAG00000057301) #11 HLA-DOA (ENSCJAG00000021571) #12 ENSCJAG00000021566 #13 HLA-DMA (ENSCJAG00000021558) #15 PSMB9 (ENSCJAG00000021553) #19 TAP1 (ENSCJAG00000021552) #20 TAP2 (ENSCJAG00000021550) #22 HLA-DOB (ENSCJAG00000035217) #23 ENSCJAG00000045515 #25 ENSCJAG00000021548 #24 ENSCJAG00000072040 ENSCJAG00000043141 ENSCJAG00000073641 ENSCJAG00000082318 ENSCJAG00000046350 ENSCJAG00000044447 ENSCJAG00000042232 ENSCJAG00000072632 ENSCJAG00000047812 ENSCJAG00000083244 ENSCJAG00000010588 ENSCJAG00000082116 Mas night monkey MODERN SPECIES 1006 HLA-DPA1 (ENSANAG00000025586) #11 ENSANAG00000021916 ENSANAG00000020251 HLA-DOA (ENSANAG00000023738) #12 BRD2 (ENSANAG00000025054) #13 ENSANAG00000022510 #14 HLA-DMA (ENSANAG00000024515) #15 HLA-DMB (ENSANAG00000031322) #16 ENSANAG00000029686 #17 PSMB9 (ENSANAG00000018195) #19 TAP1 (ENSANAG00000025374) #20 PSMB8 (ENSANAG00000023214) #21 TAP2 (ENSANAG00000023266) #22 HLA-DQB2 (ENSANAG00000025105) #24 HLA-DQA2 (ENSANAG00000023973) ##25 ENSANAG00000023444 #24 ENSANAG00000025439 ##25 Tarsier MODERN SPECIES 6430 HLA-DMA (ENSTSYG00000013575) #15 HLA-DMB (ENSTSYG00000013568) #16 PSMB9 (ENSTSYG00000007747) #19 TAP1 (ENSTSYG00000007737) #20 PSMB8 (ENSTSYG00000007730) #21 TAP2 (ENSTSYG00000029149) #22 HLA-DOB (ENSTSYG00000007697) #23 Strepsirrhini ANCESTRAL SPECIES 7 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993 #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b ENSGT00940000162975 Lemuriformes ANCESTRAL SPECIES 3 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000161821 ENSGT00940000154993 #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b ENSGT00940000162975 Mouse lemur MODERN SPECIES 28 PFDN6 (ENSMICG00000000922) RGL2 (ENSMICG00000000926) TAPBP (ENSMICG00000042293) DAXX (ENSMICG00000000933) ENSMICG00000033163 KIFC1 (ENSMICG00000005648) PHF1 (ENSMICG00000005660) CUTA (ENSMICG00000005673) SYNGAP1 (ENSMICG00000005678) SFTA2 (ENSMICG00000030909) ENSMICG00000035395 ENSMICG00000031166 PSMB9 (ENSMICG00000015307) #19 TAP1 (ENSMICG00000015264) #20 PSMB8 (ENSMICG00000015254) #21 TAP2 (ENSMICG00000015245) #22 HLA-DOB (ENSMICG00000034483) #23 ENSMICG00000031829 #24 ENSMICG00000044751 ENSMICG00000003714 #24 ENSMICG00000028538 ENSMICG00000036984 #26 ENSMICG00000035687 HLA-DRA (ENSMICG00000006228) ENSMICG00000037923 TREML2 (ENSMICG00000027522) ENSMICG00000041702 TREM2 (ENSMICG00000009719) TREML1 (ENSMICG00000035283) NFYA (ENSMICG00000009686) ENSMICG00000038280 Lemuriformes_a ANCESTRAL SPECIES 76 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000154993 #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b ENSGT00940000162975 ENSGT00940000155779.a.b Coquerels sifaka MODERN SPECIES 872 HLA-DPA1 (ENSPCOG00000015236) #11 HLA-DOA (ENSPCOG00000014372) #12 ENSPCOG00000018880 ENSPCOG00000018456 #13 ENSPCOG00000016191 #14 HLA-DMA (ENSPCOG00000022072) #15 HLA-DMB (ENSPCOG00000018934) #16 PSMB9 (ENSPCOG00000017686) #19 TAP1 (ENSPCOG00000019389) #20 PSMB8 (ENSPCOG00000028091) #21 TAP2 (ENSPCOG00000014799) #22 HLA-DOB (ENSPCOG00000022286) #23 HLA-DQB1 (ENSPCOG00000014494) #24 Greater bamboo lemur MODERN SPECIES 650 ENSPSMG00000009792 #11 HLA-DPB1 (ENSPSMG00000009639) #9 HLA-DPA1 (ENSPSMG00000009402) #11 HLA-DOA (ENSPSMG00000009261) #12 ENSPSMG00000009252 BRD2 (ENSPSMG00000009223) #13 HLA-DMA (ENSPSMG00000009171) #15 HLA-DMB (ENSPSMG00000009134) #16 PSMB9 (ENSPSMG00000009117) #19 TAP1 (ENSPSMG00000009102) #20 PSMB8 (ENSPSMG00000009083) #21 TAP2 (ENSPSMG00000008940) #22 HLA-DOB (ENSPSMG00000008851) #23 HLA-DQB1 (ENSPSMG00000008743) #24 ENSPSMG00000008349 #25 ENSPSMG00000007912 HLA-DRA (ENSPSMG00000007272) ENSPSMG00000007226 ENSPSMG00000007220 Bushbaby DUPLICATION Bushbaby MODERN SPECIES 146 B3GALT4 (ENSOGAG00000006228) RPS18 (ENSOGAG00000006225) VPS52 (ENSOGAG00000006222) RING1 (ENSOGAG00000006220) HSD17B8 (ENSOGAG00000006214) SLC39A7 (ENSOGAG00000030006) RXRB (ENSOGAG00000011689) #7 COL11A2 (ENSOGAG00000025975) #8 ENSOGAG00000034269 ENSOGAG00000016138 #9 HLA-DPA1 (ENSOGAG00000006476) #11 HLA-DOA (ENSOGAG00000014685) #12 BRD2 (ENSOGAG00000006473) #13 HLA-DMA (ENSOGAG00000006029) #15 HLA-DMB (ENSOGAG00000032749) #16 ENSOGAG00000013823 #22 PSMB9 (ENSOGAG00000013846) #19 TAP1 (ENSOGAG00000013836) #20 PSMB8 (ENSOGAG00000013830) #21 ENSOGAG00000031343 #22 HLA-DQB1 (ENSOGAG00000005662) #24 ENSOGAG00000008401 ENSOGAG00000030012 ENSOGAG00000009732 #26 HLA-DRA (ENSOGAG00000008398) BTNL2 (ENSOGAG00000008396) ENSOGAG00000025050 ENSOGAG00000013069 #26 ENSOGAG00000025825 NOTCH4 (ENSOGAG00000010193) GPSM3 (ENSOGAG00000032276) Bushbaby MODERN SPECIES 146 HSD17B8 (ENSOGAG00000006214) SLC39A7 (ENSOGAG00000030006) RXRB (ENSOGAG00000011689) #7 COL11A2 (ENSOGAG00000025975) #8 ENSOGAG00000034269 ENSOGAG00000016138 #9 HLA-DPA1 (ENSOGAG00000006476) #11 HLA-DOA (ENSOGAG00000014685) #12 BRD2 (ENSOGAG00000006473) #13 HLA-DMA (ENSOGAG00000006029) #15 HLA-DMB (ENSOGAG00000032749) #16 ENSOGAG00000013823 #22 PSMB9 (ENSOGAG00000013846) #19 TAP1 (ENSOGAG00000013836) #20 PSMB8 (ENSOGAG00000013830) #21 ENSOGAG00000031343 #22 HLA-DQB1 (ENSOGAG00000005662) #24 ENSOGAG00000008401 ENSOGAG00000030012 ENSOGAG00000009732 #26 HLA-DRA (ENSOGAG00000008398) BTNL2 (ENSOGAG00000008396) ENSOGAG00000025050 ENSOGAG00000013069 #26 ENSOGAG00000025825 NOTCH4 (ENSOGAG00000010193) GPSM3 (ENSOGAG00000032276) PBX2 (ENSOGAG00000016303) AGER (ENSOGAG00000030141) RNF5 (ENSOGAG00000031466) AGPAT1 (ENSOGAG00000010187) Euarchontoglires_A ANCESTRAL SPECIES 6 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000161821 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000154993 #26 ENSGT00940000155371 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 Tree shrew MODERN SPECIES 5171 PSMB8 (ENSTBEG00000007794) #21 ENSTBEG00000007418 #22 ENSTBEG00000007262 #23 Glires ANCESTRAL SPECIES 5 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000161821 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000154993 #26 ENSGT00940000155371 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 Rodentia ANCESTRAL SPECIES 6 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 Rodentia_A ANCESTRAL SPECIES 8 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 Hystricomorpha ANCESTRAL SPECIES 1 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000162892 #25 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00940000162450 ENSGT00980000198621 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b Hystricomorpha_a ANCESTRAL SPECIES 42 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00940000162450 ENSGT00980000198621 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b Hystricomorpha_b ANCESTRAL SPECIES 3 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000155371 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00940000162450 ENSGT00980000198621 ENSGT00940000154993.k.a #26 ENSGT00940000154993.k.b #26 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b Long-tailed chinchilla MODERN SPECIES 144 VPS52 (ENSCLAG00000008115) RING1 (ENSCLAG00000009149) HSD17B8 (ENSCLAG00000007885) SLC39A7 (ENSCLAG00000014475) RXRB (ENSCLAG00000013699) #7 COL11A2 (ENSCLAG00000007783) #8 HLA-DPA1 (ENSCLAG00000010668) #11 HLA-DPB1 (ENSCLAG00000013126) #9 HLA-DOA (ENSCLAG00000011531) #12 BRD2 (ENSCLAG00000009750) #13 HLA-DMA (ENSCLAG00000014679) #15 HLA-DMB (ENSCLAG00000008468) #16 PSMB9 (ENSCLAG00000007918) #19 TAP1 (ENSCLAG00000008052) #20 PSMB8 (ENSCLAG00000006990) #21 TAP2 (ENSCLAG00000012654) #22 HLA-DOB (ENSCLAG00000011735) #23 HLA-DQB2 (ENSCLAG00000011869) #24 ENSCLAG00000009507 ENSCLAG00000016042 ENSCLAG00000013098 HLA-DRA (ENSCLAG00000009768) BTNL2 (ENSCLAG00000007142) ENSCLAG00000015677 ENSCLAG00000011744 ENSCLAG00000009141 GPSM3 (ENSCLAG00000007406) PBX2 (ENSCLAG00000007051) AGER (ENSCLAG00000013330) RNF5 (ENSCLAG00000009576) ENSCLAG00000008617 Degu MODERN SPECIES 46 WDR46 (ENSODEG00000017342) B3GALT4 (ENSODEG00000017281) ENSODEG00000017344 VPS52 (ENSODEG00000017744) RING1 (ENSODEG00000017691) HSD17B8 (ENSODEG00000017486) SLC39A7 (ENSODEG00000017361) RXRB (ENSODEG00000017146) #7 COL11A2 (ENSODEG00000017513) #8 HLA-DPA1 (ENSODEG00000017716) #11 HLA-DOA (ENSODEG00000017569) #12 BRD2 (ENSODEG00000017239) #13 ENSODEG00000017381 #15 HLA-DMB (ENSODEG00000017802) #16 PSMB8 (ENSODEG00000017662) #21 TAP2 (ENSODEG00000017797) #22 PSMB9 (ENSODEG00000017656) #19 TAP1 (ENSODEG00000017484) #20 HLA-DOB (ENSODEG00000017495) #23 ENSODEG00000017249 #24 ENSODEG00000017510 ENSODEG00000017402 #26 ENSODEG00000017435 #26 ENSODEG00000017398 ENSODEG00000017414 ENSODEG00000017401 ENSODEG00000017653 ENSODEG00000017483 PBX2 (ENSODEG00000017449) ENSODEG00000017466 ENSODEG00000017614 Guinea pig MODERN SPECIES 15 HSD17B8 (ENSCPOG00000013940) SLC39A7 (ENSCPOG00000023790) RXRB (ENSCPOG00000013936) #7 COL11A2 (ENSCPOG00000020466) #8 ENSCPOG00000035477 #11 ENSCPOG00000024142 #9 ENSCPOG00000032859 #9 ENSCPOG00000002427 #11 HLA-DOA (ENSCPOG00000012562) #12 BRD2 (ENSCPOG00000002811) #13 HLA-DMA (ENSCPOG00000015044) #15 HLA-DMB (ENSCPOG00000002810) #16 PSMB9 (ENSCPOG00000002121) #19 TAP1 (ENSCPOG00000026988) #20 PSMB8 (ENSCPOG00000000729) #21 TAP2 (ENSCPOG00000038951) #22 HLA-DOB (ENSCPOG00000033895) #23 HLA-DQB2 (ENSCPOG00000038606) #24 ENSCPOG00000014463 #25 ENSCPOG00000040083 #26 ENSCPOG00000003574 #26 ENSCPOG00000036465 HLA-DRA (ENSCPOG00000012309) BTNL2 (ENSCPOG00000004277) ENSCPOG00000023019 ENSCPOG00000000591 PBX2 (ENSCPOG00000037281) AGER (ENSCPOG00000000590) RNF5 (ENSCPOG00000030132) AGPAT1 (ENSCPOG00000037644) EGFL8 (ENSCPOG00000040046) Naked mole-rat female MODERN SPECIES 4 VPS52 (ENSHGLG00000017226) RING1 (ENSHGLG00000019474) HSD17B8 (ENSHGLG00000019497) SLC39A7 (ENSHGLG00000018434) RXRB (ENSHGLG00000018456) #7 COL11A2 (ENSHGLG00000018531) #8 HLA-DPB1 (ENSHGLG00000019389) #9 HLA-DPA1 (ENSHGLG00000019266) #11 HLA-DOA (ENSHGLG00000019255) #12 BRD2 (ENSHGLG00000019334) #13 HLA-DMA (ENSHGLG00000017048) #15 HLA-DMB (ENSHGLG00000017060) #16 PSMB9 (ENSHGLG00000036914) #19 TAP1 (ENSHGLG00000017081) #20 PSMB8 (ENSHGLG00000017087) #21 TAP2 (ENSHGLG00000019356) #22 HLA-DOB (ENSHGLG00000016652) #23 HLA-DQB2 (ENSHGLG00000038840) #24 ENSHGLG00000043086 ENSHGLG00000011398 #25 ENSHGLG00000011613 #26 ENSHGLG00000011873 #26 ENSHGLG00000012074 #26 HLA-DRA (ENSHGLG00000012243) GPSM3 (ENSHGLG00000012807) ENSHGLG00000013320 AGER (ENSHGLG00000013559) ENSHGLG00000048713 AGPAT1 (ENSHGLG00000013956) EGFL8 (ENSHGLG00000014379) PPT2 (ENSHGLG00000016656) Sciuridae ANCESTRAL SPECIES 1 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 Marmotini ANCESTRAL SPECIES 18 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353.i #23 ENSGT00940000161821.l.a ENSGT00940000154723.b #24 ENSGT00940000161821.k ENSGT00940000154993.k.a #26 ENSGT00940000154993.k.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00940000162450.b.a ENSGT00940000163287 ENSGT00980000198621 ENSGT00390000002471 ENSGT00940000160293 Marmotini_b ANCESTRAL SPECIES 8 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353.i #23 Arctic ground squirrel MODERN SPECIES 1178 PSMB9 (ENSUPAG00010005439) #19 TAP1 (ENSUPAG00010004755) #20 PSMB8 (ENSUPAG00010004745) #21 TAP2 (ENSUPAG00010004733) #22 ENSUPAG00010004730 #23 Squirrel MODERN SPECIES 76 VPS52 (ENSSTOG00000002397) RING1 (ENSSTOG00000026166) HSD17B8 (ENSSTOG00000020853) SLC39A7 (ENSSTOG00000014304) RXRB (ENSSTOG00000027099) #7 COL11A2 (ENSSTOG00000003578) #8 HLA-DPB1 (ENSSTOG00000003567) #9 HLA-DPA1 (ENSSTOG00000003558) #11 HLA-DOA (ENSSTOG00000010820) #12 BRD2 (ENSSTOG00000010807) #13 HLA-DMA (ENSSTOG00000009246) #15 HLA-DMB (ENSSTOG00000019821) #16 PSMB9 (ENSSTOG00000003475) #19 TAP1 (ENSSTOG00000003451) #20 PSMB8 (ENSSTOG00000019724) #21 TAP2 (ENSSTOG00000003413) #22 ENSSTOG00000030715 HLA-DOB (ENSSTOG00000003405) #23 ENSSTOG00000028098 Alpin marmot MODERN SPECIES 20 VPS52 (ENSMMMG00000024234) RING1 (ENSMMMG00000024233) HSD17B8 (ENSMMMG00000024232) SLC39A7 (ENSMMMG00000024231) RXRB (ENSMMMG00000024230) #7 COL11A2 (ENSMMMG00000024229) #8 HLA-DPB1 (ENSMMMG00000024228) #9 HLA-DPA1 (ENSMMMG00000024227) #11 HLA-DOA (ENSMMMG00000024226) #12 BRD2 (ENSMMMG00000024225) #13 HLA-DMA (ENSMMMG00000024224) #15 HLA-DMB (ENSMMMG00000024223) #16 PSMB9 (ENSMMMG00000024222) #19 TAP1 (ENSMMMG00000024221) #20 PSMB8 (ENSMMMG00000024220) #21 TAP2 (ENSMMMG00000024218) #22 HLA-DOB (ENSMMMG00000024217) #23 ENSMMMG00000024215 ENSMMMG00000024056 #24 ENSMMMG00000020395 ENSMMMG00000018808 #24 ENSMMMG00000018797 ENSMMMG00000018785 ENSMMMG00000018780 #26 ENSMMMG00000018777 #26 HLA-DRA (ENSMMMG00000018744) BTNL2 (ENSMMMG00000018734) ENSMMMG00000018723 ENSMMMG00000018720 ENSMMMG00000018661 ENSMMMG00000018655 Eurasian red squirrel MODERN SPECIES 16 ENSSVLG00005004778 RING1 (ENSSVLG00005004804) HSD17B8 (ENSSVLG00005004902) SLC39A7 (ENSSVLG00005004925) RXRB (ENSSVLG00005004952) #7 COL11A2 (ENSSVLG00005005202) #8 HLA-DPB1 (ENSSVLG00005006269) #9 HLA-DPA1 (ENSSVLG00005006304) #11 HLA-DOA (ENSSVLG00005006335) #12 BRD2 (ENSSVLG00005006374) #13 HLA-DMA (ENSSVLG00005006465) #15 HLA-DMB (ENSSVLG00005006515) #16 PSMB9 (ENSSVLG00005006563) #19 TAP1 (ENSSVLG00005006618) #20 PSMB8 (ENSSVLG00005006647) #21 TAP2 (ENSSVLG00005006696) #22 HLA-DOB (ENSSVLG00005006746) #23 ENSSVLG00005006864 #24 ENSSVLG00005007173 HLA-DQB2 (ENSSVLG00005007368) #24 ENSSVLG00005007455 ENSSVLG00005007482 #26 ENSSVLG00005007511 ENSSVLG00005007546 #26 HLA-DRA (ENSSVLG00005007588) BTNL2 (ENSSVLG00005007627) ENSSVLG00005007707 ENSSVLG00005007731 ENSSVLG00005007751 ENSSVLG00005008664 NOTCH4 (ENSSVLG00005008720) Rodentia_B ANCESTRAL SPECIES 8 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000154993.l #26 ENSGT00940000155371 ENSGT00940000154993.k.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 Myomorpha ANCESTRAL SPECIES 11 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 Muroidea ANCESTRAL SPECIES 15 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 Muroidea_A ANCESTRAL SPECIES 8 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00980000198621 ENSGT00940000163287 ENSGT00390000002471 Cricetidae ANCESTRAL SPECIES 9 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00940000162450 ENSGT00980000198621 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b Cricetinae ANCESTRAL SPECIES 43 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.b.b #26 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00940000162450 ENSGT00980000198621 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b Golden Hamster MODERN SPECIES 856 Ring1 (ENSMAUG00000012254) Hsd17b8 (ENSMAUG00000013407) Slc39a7 (ENSMAUG00000015255) Rxrb (ENSMAUG00000009043) #7 Col11a2 (ENSMAUG00000021348) #8 Brd2 (ENSMAUG00000006799) #13 H2-DMa (ENSMAUG00000000861) #15 ENSMAUG00000008923 #16 Psmb9 (ENSMAUG00000007584) #19 Tap1 (ENSMAUG00000017718) #20 Psmb8 (ENSMAUG00000003396) #21 Tap2 (ENSMAUG00000015081) #22 H2-Ob (ENSMAUG00000007698) #23 H2-Ab1 (ENSMAUG00000020395) #24 H2-Aa (ENSMAUG00000003363) H2-Eb2 (ENSMAUG00000018151) #26 Btnl2 (ENSMAUG00000003530) Btnl1 (ENSMAUG00000016817) ENSMAUG00000015609 ENSMAUG00000009410 Notch4 (ENSMAUG00000015895) Gpsm3 (ENSMAUG00000013374) Pbx2 (ENSMAUG00000003275) Ager (ENSMAUG00000001006) Rnf5 (ENSMAUG00000000684) Agpat1 (ENSMAUG00000011278) Egfl8 (ENSMAUG00000013647) Cricetidae_B ANCESTRAL SPECIES 12 ENSGT00390000008815 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.l #26 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00940000162450 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b Prairie vole MODERN SPECIES 352 Vps52 (ENSMOCG00000004229) ENSMOCG00000014473 Ring1 (ENSMOCG00000020973) Hsd17b8 (ENSMOCG00000001695) Slc39a7 (ENSMOCG00000019993) Rxrb (ENSMOCG00000000374) #7 Col11a2 (ENSMOCG00000016852) #8 ENSMOCG00000010963 #11 H2-Oa (ENSMOCG00000020236) #12 Brd2 (ENSMOCG00000016368) #13 H2-DMa (ENSMOCG00000002744) #15 ENSMOCG00000022309 #16 Psmb9 (ENSMOCG00000005369) #19 Tap1 (ENSMOCG00000019762) #20 Psmb8 (ENSMOCG00000014719) #21 Tap2 (ENSMOCG00000022898) #22 H2-Ob (ENSMOCG00000008562) #23 H2-Ab1 (ENSMOCG00000008439) #24 ENSMOCG00000013355 ENSMOCG00000017941 #26 ENSMOCG00000019721 H2-Ea (ENSMOCG00000008786) Btnl2 (ENSMOCG00000014437) Btnl1 (ENSMOCG00000018715) ENSMOCG00000011431 Rnf39 (ENSMOCG00000015333) Ppp1r11 (ENSMOCG00000002207) Polr1h (ENSMOCG00000008537) Polr1has (ENSMOCG00000015745) H2-M5 (ENSMOCG00000004410) Mog (ENSMOCG00000019437) Northern American deer mouse MODERN SPECIES 13 ENSPEMG00000024622 Ring1 (ENSPEMG00000019238) Hsd17b8 (ENSPEMG00000012925) Slc39a7 (ENSPEMG00000003403) Rxrb (ENSPEMG00000018454) #7 Col11a2 (ENSPEMG00000016918) #8 ENSPEMG00000026148 #9 ENSPEMG00000015442 #11 H2-Oa (ENSPEMG00000011158) #12 Brd2 (ENSPEMG00000018138) #13 H2-DMa (ENSPEMG00000013203) #15 ENSPEMG00000018040 #16 Psmb9 (ENSPEMG00000009609) #19 Tap1 (ENSPEMG00000012461) #20 Psmb8 (ENSPEMG00000012170) #21 Tap2 (ENSPEMG00000010503) #22 H2-Ob (ENSPEMG00000001796) #23 ENSPEMG00000012719 #24 ENSPEMG00000007095 ENSPEMG00000015401 #24 ENSPEMG00000012679 H2-Eb1 (ENSPEMG00000002889) H2-Eb2 (ENSPEMG00000006456) #26 H2-Ea (ENSPEMG00000008261) Btnl2 (ENSPEMG00000007431) Btnl1 (ENSPEMG00000008094) ENSPEMG00000028515 #26 ENSPEMG00000011748 ENSPEMG00000026840 ENSPEMG00000026496 Notch4 (ENSPEMG00000015181) Murinae ANCESTRAL SPECIES 18 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 Mus ANCESTRAL SPECIES 16 ENSGT00390000008815 ENSGT00980000198488.m.a.b.a.b.a.a.a.c ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450.f ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b Mus_A ANCESTRAL SPECIES 10 ENSGT00390000008815 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381.h #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450.f ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b.c.a Mus_B ANCESTRAL SPECIES 9 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381.g #16 ENSGT00940000160381.h #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450.e ENSGT00940000162450.f ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 Mus_C ANCESTRAL SPECIES 9 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381.g #16 ENSGT00940000160381.h #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450.e ENSGT00940000162450.f ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 Steppe mouse MODERN SPECIES 2564 ENSMSIG00000012243 Ring1 (ENSMSIG00000012190) ENSMSIG00000012153 Slc39a7 (ENSMSIG00000012137) Rxrb (ENSMSIG00000012091) #7 Col11a2 (ENSMSIG00000011347) #8 ENSMSIG00000011214 #11 H2-Oa (ENSMSIG00000011198) #12 Brd2 (ENSMSIG00000011118) #13 H2-DMa (ENSMSIG00000011088) #15 H2-DMb1 (ENSMSIG00000011055) #16 Psmb9 (ENSMSIG00000011042) #19 ENSMSIG00000011012 #20 Psmb8 (ENSMSIG00000010986) #21 ENSMSIG00000010972 Tap2 (ENSMSIG00000010919) #22 H2-Ob (ENSMSIG00000010868) #23 ENSMSIG00000010843 #24 H2-Aa (ENSMSIG00000010823) ENSMSIG00000010807 H2-Eb2 (ENSMSIG00000010788) #26 H2-Ea (ENSMSIG00000010776) Btnl2 (ENSMSIG00000010760) Btnl1 (ENSMSIG00000010748) ENSMSIG00000010738 Tsbp1 (ENSMSIG00000010478) Btnl4 (ENSMSIG00000010440) ENSMSIG00000010410 spretus MODERN SPECIES 8 B3galt4 (MGP_SPRETEiJ_G0022339) MGP_SPRETEiJ_G0022340 Ring1 (MGP_SPRETEiJ_G0022342) Hsd17b8 (MGP_SPRETEiJ_G0022343) Slc39a7 (MGP_SPRETEiJ_G0022344) Rxrb (MGP_SPRETEiJ_G0022345) #7 Col11a2 (MGP_SPRETEiJ_G0022346) #8 H2-Oa (MGP_SPRETEiJ_G0022347) #12 Brd2 (MGP_SPRETEiJ_G0022348) #13 H2-DMa (MGP_SPRETEiJ_G0022349) #15 MGP_SPRETEiJ_G0022350 #16 H2-DMb2 (MGP_SPRETEiJ_G0022351) #16 Psmb9 (MGP_SPRETEiJ_G0022352) #19 Tap1 (MGP_SPRETEiJ_G0022353) #20 Psmb8 (MGP_SPRETEiJ_G0022354) #21 Tap2 (MGP_SPRETEiJ_G0022355) #22 MGP_SPRETEiJ_G0022356 H2-Ob (MGP_SPRETEiJ_G0022357) #23 H2-Ab1 (MGP_SPRETEiJ_G0022358) #24 H2-Aa (MGP_SPRETEiJ_G0022359) MGP_SPRETEiJ_G0022360 H2-Eb2 (MGP_SPRETEiJ_G0022361) #26 Btnl2 (MGP_SPRETEiJ_G0022362) Btnl1 (MGP_SPRETEiJ_G0022363) Tsbp1 (MGP_SPRETEiJ_G0022364) MGP_SPRETEiJ_G0022366 Notch4 (MGP_SPRETEiJ_G0022367) Gpsm3 (MGP_SPRETEiJ_G0022368) Pbx2 (MGP_SPRETEiJ_G0022369) Ager (MGP_SPRETEiJ_G0022370) Rnf5 (MGP_SPRETEiJ_G0022371) Mouse MODERN SPECIES 8 Vps52 (ENSMUSG00000024319) H2-K1 (ENSMUSG00000061232) Ring1 (ENSMUSG00000024325) Hsd17b8 (ENSMUSG00000073422) Slc39a7 (ENSMUSG00000024327) Rxrb (ENSMUSG00000039656) #7 Col11a2 (ENSMUSG00000024330) #8 H2-Oa (ENSMUSG00000024334) #12 Brd2 (ENSMUSG00000024335) #13 H2-DMa (ENSMUSG00000037649) #15 H2-DMb2 (ENSMUSG00000037548) #16 H2-DMb1 (ENSMUSG00000079547) #16 Psmb9 (ENSMUSG00000096727) #19 Tap1 (ENSMUSG00000037321) #20 Psmb8 (ENSMUSG00000024338) #21 Tap2 (ENSMUSG00000024339) #22 H2-Ob (ENSMUSG00000041538) #23 H2-Ab1 (ENSMUSG00000073421) #24 H2-Aa (ENSMUSG00000036594) H2-Eb1 (ENSMUSG00000060586) H2-Eb2 (ENSMUSG00000067341) #26 H2-Ea (ENSMUSG00000036322) Btnl2 (ENSMUSG00000024340) Btnl1 (ENSMUSG00000062638) Tsbp1 (ENSMUSG00000057246) Btnl4 (ENSMUSG00000058435) Btnl6 (ENSMUSG00000092618) Notch4 (ENSMUSG00000015468) Gpsm3 (ENSMUSG00000034786) Pbx2 (ENSMUSG00000034673) Ager (ENSMUSG00000015452) Ryukyu mouse MODERN SPECIES 8 MGP_CAROLIEiJ_G0021434 MGP_CAROLIEiJ_G0021435 Ring1 (MGP_CAROLIEiJ_G0021436) Hsd17b8 (MGP_CAROLIEiJ_G0021437) Slc39a7 (MGP_CAROLIEiJ_G0021438) Rxrb (MGP_CAROLIEiJ_G0021439) #7 Col11a2 (MGP_CAROLIEiJ_G0021440) #8 H2-Oa (MGP_CAROLIEiJ_G0021441) #12 Brd2 (MGP_CAROLIEiJ_G0021442) #13 H2-DMa (MGP_CAROLIEiJ_G0021443) #15 MGP_CAROLIEiJ_G0021444 #16 MGP_CAROLIEiJ_G0021445 #16 Psmb9 (MGP_CAROLIEiJ_G0021446) #19 Tap1 (MGP_CAROLIEiJ_G0021447) #20 Psmb8 (MGP_CAROLIEiJ_G0021448) #21 Tap2 (MGP_CAROLIEiJ_G0021449) #22 MGP_CAROLIEiJ_G0021450 H2-Ob (MGP_CAROLIEiJ_G0021451) #23 H2-Ab1 (MGP_CAROLIEiJ_G0021452) #24 H2-Aa (MGP_CAROLIEiJ_G0021453) MGP_CAROLIEiJ_G0021454 H2-Eb2 (MGP_CAROLIEiJ_G0021455) #26 Btnl2 (MGP_CAROLIEiJ_G0021456) Btnl1 (MGP_CAROLIEiJ_G0021457) Tsbp1 (MGP_CAROLIEiJ_G0021458) Btnl6 (MGP_CAROLIEiJ_G0021459) MGP_CAROLIEiJ_G0021460 Notch4 (MGP_CAROLIEiJ_G0021461) Gpsm3 (MGP_CAROLIEiJ_G0021462) Pbx2 (MGP_CAROLIEiJ_G0021463) Ager (MGP_CAROLIEiJ_G0021464) Shrew mouse MODERN SPECIES 9 Pfdn6 (MGP_PahariEiJ_G0020430) Wdr46 (MGP_PahariEiJ_G0020431) B3galt4 (MGP_PahariEiJ_G0020432) MGP_PahariEiJ_G0020433 Ring1 (MGP_PahariEiJ_G0020434) Hsd17b8 (MGP_PahariEiJ_G0020435) Slc39a7 (MGP_PahariEiJ_G0020436) Rxrb (MGP_PahariEiJ_G0020437) #7 Col11a2 (MGP_PahariEiJ_G0020438) #8 H2-Oa (MGP_PahariEiJ_G0020439) #12 Brd2 (MGP_PahariEiJ_G0020440) #13 H2-DMa (MGP_PahariEiJ_G0020441) #15 Psmb9 (MGP_PahariEiJ_G0020442) #19 Tap1 (MGP_PahariEiJ_G0020443) #20 Psmb8 (MGP_PahariEiJ_G0020444) #21 Tap2 (MGP_PahariEiJ_G0020445) #22 MGP_PahariEiJ_G0020446 H2-Ob (MGP_PahariEiJ_G0020447) #23 H2-Ab1 (MGP_PahariEiJ_G0020448) #24 H2-Aa (MGP_PahariEiJ_G0020449) MGP_PahariEiJ_G0020450 H2-Eb2 (MGP_PahariEiJ_G0020451) #26 Btnl2 (MGP_PahariEiJ_G0020452) Btnl1 (MGP_PahariEiJ_G0020453) Tsbp1 (MGP_PahariEiJ_G0020454) MGP_PahariEiJ_G0020455 Notch4 (MGP_PahariEiJ_G0020456) Gpsm3 (MGP_PahariEiJ_G0020457) Pbx2 (MGP_PahariEiJ_G0020458) Ager (MGP_PahariEiJ_G0020459) Agpat1 (MGP_PahariEiJ_G0020461) Rat MODERN SPECIES 12 Vps52 (ENSRNOG00000000470) Ring1 (ENSRNOG00000000467) Hsd17b8 (ENSRNOG00000000466) Slc39a7 (ENSRNOG00000000465) Rxrb (ENSRNOG00000000464) #7 Col11a2 (ENSRNOG00000000463) #8 RT1-Hb-ps1 (ENSRNOG00000061936) #9 RT1-Ha (ENSRNOG00000045908) #11 RT1-DOa (ENSRNOG00000026762) #12 Brd2 (ENSRNOG00000000461) #13 RT1-DMa (ENSRNOG00000066773) #15 RT1-DMb (ENSRNOG00000049491) #16 Psmb9 (ENSRNOG00000000459) #19 Tap1 (ENSRNOG00000000457) #20 Psmb8 (ENSRNOG00000000456) #21 Tap2 (ENSRNOG00000000455) #22 RT1-DOb (ENSRNOG00000000454) #23 RT1-Bb (ENSRNOG00000032708) #24 RT1-Ba (ENSRNOG00000000451) RT1-Db1 (ENSRNOG00000033215) RT1-Db2 (ENSRNOG00000030431) RT1-Da (ENSRNOG00000032844) Btnl2 (ENSRNOG00000028541) Btnl3 (ENSRNOG00000039396) Tsbp1 (ENSRNOG00000039398) Btn3a2 (ENSRNOG00000068592) Btnl5 (ENSRNOG00000047304) AABR07044388.4 (ENSRNOG00000052710) Btnl7 (ENSRNOG00000000446) Btnl8 (ENSRNOG00000064738) Btnl4 (ENSRNOG00000068088) Lesser Egyptian jerboa MODERN SPECIES 41 Rps18 (ENSJJAG00000018899) Vps52 (ENSJJAG00000020884) Ring1 (ENSJJAG00000022246) Hsd17b8 (ENSJJAG00000021794) Slc39a7 (ENSJJAG00000014121) Rxrb (ENSJJAG00000004710) #7 Col11a2 (ENSJJAG00000010448) #8 ENSJJAG00000023713 #9 H2-Oa (ENSJJAG00000000542) #12 Brd2 (ENSJJAG00000010183) #13 H2-DMa (ENSJJAG00000012555) #15 ENSJJAG00000004664 #16 Psmb9 (ENSJJAG00000022884) #19 Tap1 (ENSJJAG00000022861) #20 Psmb8 (ENSJJAG00000023598) #21 Tap2 (ENSJJAG00000004300) #22 ENSJJAG00000003836 H2-Ob (ENSJJAG00000022338) #23 Kangaroo rat MODERN SPECIES 519 Vps52 (ENSDORG00000013822) Ring1 (ENSDORG00000013820) Hsd17b8 (ENSDORG00000013819) Slc39a7 (ENSDORG00000013818) Rxrb (ENSDORG00000013816) #7 Col11a2 (ENSDORG00000013815) #8 ENSDORG00000024606 #9 ENSDORG00000004500 #11 H2-Oa (ENSDORG00000004499) #12 Brd2 (ENSDORG00000004497) #13 ENSDORG00000005173 #15 ENSDORG00000005172 #16 Psmb9 (ENSDORG00000006231) #19 Tap1 (ENSDORG00000029698) #20 Psmb8 (ENSDORG00000028592) #21 Tap2 (ENSDORG00000008311) #22 ENSDORG00000008310 #23 ENSDORG00000011904 ENSDORG00000006991 #26 ENSDORG00000029602 #26 ENSDORG00000024908 H2-Ea (ENSDORG00000014782) ENSDORG00000028297 ENSDORG00000009936 Gpsm3 (ENSDORG00000025609) Pbx2 (ENSDORG00000009932) ENSDORG00000009930 Rnf5 (ENSDORG00000023271) Agpat1 (ENSDORG00000009925) Egfl8 (ENSDORG00000019824) Ppt2 (ENSDORG00000029200) Lagomorpha ANCESTRAL SPECIES 2 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162498 #11 ENSGT00940000162390 #9 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000161821 ENSGT00940000154993 #26 ENSGT00940000154723.b #24 ENSGT00940000155371 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 Rabbit MODERN SPECIES 3 B3GALT4 (ENSOCUG00000010550) ENSOCUG00000010546 VPS52 (ENSOCUG00000010533) HSD17B8 (ENSOCUG00000020995) SLC39A7 (ENSOCUG00000011598) RXRB (ENSOCUG00000011590) #7 COL11A2 (ENSOCUG00000016497) #8 HLA-DPB1 (ENSOCUG00000008721) #9 ENSOCUG00000003319 #12 BRD2 (ENSOCUG00000003097) #13 HLA-DMA (ENSOCUG00000022573) #15 HLA-DMB (ENSOCUG00000026567) #16 ENSOCUG00000002139 #19 TAP1 (ENSOCUG00000002135) #20 PSMB8 (ENSOCUG00000002131) #21 TAP2 (ENSOCUG00000002489) #22 HLA-DOB (ENSOCUG00000029437) #23 ENSOCUG00000002480 HLA-DQB1 (ENSOCUG00000002485) #24 ENSOCUG00000030453 ENSOCUG00000029731 #26 HLA-DRA (ENSOCUG00000009103) ENSOCUG00000025822 ENSOCUG00000006769 ENSOCUG00000021762 SFTA2 (ENSOCUG00000035950) GTF2H4 (ENSOCUG00000021496) DDR1 (ENSOCUG00000016487) IER3 (ENSOCUG00000016451) FLOT1 (ENSOCUG00000017308) TUBB (ENSOCUG00000002187) Pika MODERN SPECIES 4582 ENSOPRG00000001644 #22 ENSOPRG00000001634 #23 Laurasiatheria ANCESTRAL SPECIES 7 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.m.a ENSGT00940000154993 #26 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000161847 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 ENSGT00940000162450 Eulipotyphla ANCESTRAL SPECIES ENSGT00940000160499 #22 Common shrew MODERN SPECIES 6712 ENSSARG00000009645 #22 Hedgehog MODERN SPECIES 12688 TAP2 (ENSEEUG00000011038) #22 Laurasiatheria_a ANCESTRAL SPECIES 7 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.m.a ENSGT00940000154993 #26 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000161847 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 ENSGT00940000162450 Artiodactyla ANCESTRAL SPECIES 15 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.m.a.a ENSGT00940000155371.m.a.b.b ENSGT00940000154993 #26 ENSGT00940000155371.n ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 Suina ANCESTRAL SPECIES 17 ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.m.a.a ENSGT00940000155371.n ENSGT00940000154993 #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 Pig MODERN SPECIES 15 GFRAL (ENSSSCG00000001480) HMGCLL1 (ENSSSCG00000001479) BMP5 (ENSSSCG00000001478) RING1 (ENSSSCG00000001477) HSD17B8 (ENSSSCG00000001476) SLC39A7 (ENSSSCG00000001475) RXRB (ENSSSCG00000001474) #7 COL11A2 (ENSSSCG00000001473) #8 SLA-DOA (ENSSSCG00000001472) #12 BRD2 (ENSSSCG00000001471) #13 SLA-DMA (ENSSSCG00000001470) #15 SLA-DMB (ENSSSCG00000001469) #16 TAP1 (ENSSSCG00000025618) #20 PSMB9 (ENSSSCG00000001463) #19 PSMB8 (ENSSSCG00000026951) #21 TAP2 (ENSSSCG00000025593) #22 HLA-DOB (ENSSSCG00000001459) #23 ENSSSCG00000063263 #24 ENSSSCG00000001458 ENSSSCG00000043413 SLA-DQB1 (ENSSSCG00000001457) #24 ENSSSCG00000001456 ENSSSCG00000001455 ENSSSCG00000061569 ENSSSCG00000031336 ENSSSCG00000061450 HLA-DRA (ENSSSCG00000001453) BTNL2 (ENSSSCG00000025071) ENSSSCG00000027921 ENSSSCG00000033414 ENSSSCG00000030874 Chacoan peccary MODERN SPECIES 782 HCRTR2 (ENSCWAG00000012598) GFRAL (ENSCWAG00000012676) HMGCLL1 (ENSCWAG00000012792) BMP5 (ENSCWAG00000013472) RING1 (ENSCWAG00000013538) HSD17B8 (ENSCWAG00000013599) SLC39A7 (ENSCWAG00000013691) COL11A2 (ENSCWAG00000013860) #8 HLA-DOA (ENSCWAG00000015899) #12 BRD2 (ENSCWAG00000015939) #13 HLA-DMA (ENSCWAG00000016104) #15 HLA-DMB (ENSCWAG00000016177) #16 PSMB9 (ENSCWAG00000016225) #19 TAP1 (ENSCWAG00000016313) #20 PSMB8 (ENSCWAG00000016617) #21 TAP2 (ENSCWAG00000016671) #22 ENSCWAG00000016717 #23 ENSCWAG00000016773 #23 HLA-DQB1 (ENSCWAG00000016835) #24 ENSCWAG00000016903 ENSCWAG00000016932 ENSCWAG00000016954 #26 HLA-DRA (ENSCWAG00000016997) BTNL2 (ENSCWAG00000017038) ENSCWAG00000017173 ENSCWAG00000017259 ENSCWAG00000017301 ENSCWAG00000017332 ENSCWAG00000017375 NOTCH4 (ENSCWAG00000017439) GPSM3 (ENSCWAG00000017614) Artiodactyla_a ANCESTRAL SPECIES 19 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.m.a.a ENSGT00940000154993 #26 ENSGT00940000155371.m.a.b.b ENSGT00940000155371.m.b ENSGT00940000155371.n ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 Camelidae ANCESTRAL SPECIES 13 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.jb #24 ENSGT00940000155371.m.b ENSGT00940000154723.b.ib #24 ENSGT00940000161821.d ENSGT00940000155371.m.a.a ENSGT00940000155371.m.a.b.a ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 Arabian camel MODERN SPECIES 12 RXRB (ENSCDRG00005021632) #7 COL11A2 (ENSCDRG00005021542) #8 HLA-DPB1 (ENSCDRG00005021506) #9 HLA-DPA1 (ENSCDRG00005021505) #11 HLA-DOA (ENSCDRG00005021502) #12 BRD2 (ENSCDRG00005021496) #13 HLA-DMA (ENSCDRG00005021489) #15 HLA-DMB (ENSCDRG00005021484) #16 PSMB9 (ENSCDRG00005021480) #19 TAP1 (ENSCDRG00005021477) #20 PSMB8 (ENSCDRG00005021475) #21 HLA-DOB (ENSCDRG00005021474) #23 ENSCDRG00005021472 #24 ENSCDRG00005021469 ENSCDRG00005021466 TAP2 (ENSCDRG00005021460) #22 ENSCDRG00005021455 #24 ENSCDRG00005021452 #24 ENSCDRG00005021448 ENSCDRG00005021439 ENSCDRG00005021434 HLA-DRA (ENSCDRG00005021429) BTNL2 (ENSCDRG00005021424) ENSCDRG00005021419 ENSCDRG00005021416 ENSCDRG00005021411 ENSCDRG00005021398 NOTCH4 (ENSCDRG00005021381) GPSM3 (ENSCDRG00005021372) PBX2 (ENSCDRG00005021366) AGER (ENSCDRG00005021314) Alpaca MODERN SPECIES 2777 PSMB9 (ENSVPAG00000012498) #19 ENSVPAG00000012497 #20 PSMB8 (ENSVPAG00000012496) #21 ENSVPAG00000012495 #22 ENSVPAG00000012493 #23 Artiodactyla_b ANCESTRAL SPECIES 15 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.b ENSGT00940000155371.m.a.b.b ENSGT00940000154993 #26 ENSGT00940000155371.m.a.a ENSGT00940000161821.d ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b Cetacea ANCESTRAL SPECIES 7 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022.g ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 ENSGT00940000155008.C ENSGT00390000016954 Odontoceti ANCESTRAL SPECIES 5 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022.g ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 ENSGT00940000155008.C ENSGT00390000016954 Odontoceti_a ANCESTRAL SPECIES 5 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022.g ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 ENSGT00940000153769.C ENSGT00940000155008.C Odontoceti_b ANCESTRAL SPECIES 6 ENSGT00390000008815 ENSGT00940000161022.g ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162112 #12 ENSGT00940000154732.q.b.a ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000153769.C ENSGT00940000155008.C ENSGT00390000016954 Monodontidae ANCESTRAL SPECIES 4 ENSGT00390000008815 ENSGT00940000161022.g ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162112 #12 ENSGT00940000154732.q.b.a ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 ENSGT00940000155008.C ENSGT00390000016954 Narwhal MODERN SPECIES 310 VPS52 (ENSMMNG00015012607) ENSMMNG00015012638 HSD17B8 (ENSMMNG00015012658) SLC39A7 (ENSMMNG00015012682) RXRB (ENSMMNG00015012697) #7 COL11A2 (ENSMMNG00015012846) #8 ENSMMNG00015013117 #9 HLA-DOA (ENSMMNG00015013123) #12 ENSMMNG00015013152 BRD2 (ENSMMNG00015013179) #13 HLA-DMA (ENSMMNG00015013256) #15 HLA-DMB (ENSMMNG00015013276) #16 PSMB9 (ENSMMNG00015013288) #19 TAP1 (ENSMMNG00015013311) #20 PSMB8 (ENSMMNG00015013325) #21 TAP2 (ENSMMNG00015013343) #22 HLA-DOB (ENSMMNG00015013519) #23 ENSMMNG00015013533 GCLC (ENSMMNG00015013551) KLHL31 (ENSMMNG00015013579) LRRC1 (ENSMMNG00015013594) MLIP (ENSMMNG00015013648) ENSMMNG00015013701 TINAG (ENSMMNG00015013728) FAM83B (ENSMMNG00015013752) HCRTR2 (ENSMMNG00015013768) GFRAL (ENSMMNG00015013778) HMGCLL1 (ENSMMNG00015013822) BMP5 (ENSMMNG00015013873) COL21A1 (ENSMMNG00015013907) DST (ENSMMNG00015014103) Beluga whale MODERN SPECIES 8 RPS18 (ENSDLEG00000009077) VPS52 (ENSDLEG00000008948) RING1 (ENSDLEG00000008919) HSD17B8 (ENSDLEG00000008819) SLC39A7 (ENSDLEG00000008789) RXRB (ENSDLEG00000008760) #7 COL11A2 (ENSDLEG00000008562) #8 HLA-DOA (ENSDLEG00000008482) #12 ENSDLEG00000008322 BRD2 (ENSDLEG00000008248) #13 HLA-DMA (ENSDLEG00000008210) #15 HLA-DMB (ENSDLEG00000008166) #16 PSMB9 (ENSDLEG00000008143) #19 TAP1 (ENSDLEG00000021996) #20 PSMB8 (ENSDLEG00000021995) #21 TAP2 (ENSDLEG00000021994) #22 ENSDLEG00000021992 GCLC (ENSDLEG00000021991) KLHL31 (ENSDLEG00000021990) ENSDLEG00000021989 LRRC1 (ENSDLEG00000021988) MLIP (ENSDLEG00000021987) ENSDLEG00000021986 TINAG (ENSDLEG00000021985) FAM83B (ENSDLEG00000021984) HCRTR2 (ENSDLEG00000021982) GFRAL (ENSDLEG00000021981) HMGCLL1 (ENSDLEG00000021980) BMP5 (ENSDLEG00000021979) ENSDLEG00000021977 DST (ENSDLEG00000021102) Vaquita MODERN SPECIES 2 VPS52 (ENSPSNG00000020483) RING1 (ENSPSNG00000020433) HSD17B8 (ENSPSNG00000020389) SLC39A7 (ENSPSNG00000020344) RXRB (ENSPSNG00000020305) #7 COL11A2 (ENSPSNG00000019010) #8 ENSPSNG00000018732 #9 HLA-DOA (ENSPSNG00000018672) #12 ENSPSNG00000018620 BRD2 (ENSPSNG00000018549) #13 HLA-DMA (ENSPSNG00000018364) #15 HLA-DMB (ENSPSNG00000018284) #16 PSMB9 (ENSPSNG00000018232) #19 TAP1 (ENSPSNG00000018201) #20 PSMB8 (ENSPSNG00000018160) #21 TAP2 (ENSPSNG00000018051) #22 HLA-DOB (ENSPSNG00000017969) #23 ENSPSNG00000017762 GCLC (ENSPSNG00000017555) KLHL31 (ENSPSNG00000017492) ENSPSNG00000017462 MLIP (ENSPSNG00000017046) TINAG (ENSPSNG00000016830) FAM83B (ENSPSNG00000016755) HCRTR2 (ENSPSNG00000016655) GFRAL (ENSPSNG00000016509) HMGCLL1 (ENSPSNG00000016099) BMP5 (ENSPSNG00000015931) ENSPSNG00000015738 DST (ENSPSNG00000015242) BEND6 (ENSPSNG00000014810) Dolphin MODERN SPECIES 2738 WDR46 (ENSTTRG00000004304) RPS18 (ENSTTRG00000004302) VPS52 (ENSTTRG00000004298) RING1 (ENSTTRG00000004296) HSD17B8 (ENSTTRG00000004294) SLC39A7 (ENSTTRG00000004293) RXRB (ENSTTRG00000004291) #7 COL11A2 (ENSTTRG00000004283) #8 HLA-DOA (ENSTTRG00000004282) #12 BRD2 (ENSTTRG00000004278) #13 HLA-DMA (ENSTTRG00000004277) #15 HLA-DMB (ENSTTRG00000004276) #16 PSMB9 (ENSTTRG00000004272) #19 TAP1 (ENSTTRG00000004264) #20 PSMB8 (ENSTTRG00000004259) #21 TAP2 (ENSTTRG00000004254) #22 HLA-DOB (ENSTTRG00000004249) #23 Sperm whale MODERN SPECIES 9 CUTA (ENSPCTG00005012115) PHF1 (ENSPCTG00005012052) KIFC1 (ENSPCTG00005012002) ENSPCTG00005011963 RING1 (ENSPCTG00005011923) HSD17B8 (ENSPCTG00005011876) SLC39A7 (ENSPCTG00005011775) RXRB (ENSPCTG00005011572) #7 COL11A2 (ENSPCTG00005009478) #8 HLA-DOA (ENSPCTG00005009319) #12 ENSPCTG00005009114 #13 HLA-DMB (ENSPCTG00005009080) #16 PSMB9 (ENSPCTG00005008969) #19 TAP1 (ENSPCTG00005021480) #20 PSMB8 (ENSPCTG00005021456) #21 TAP2 (ENSPCTG00005021415) #22 HLA-DOB (ENSPCTG00005021383) #23 ENSPCTG00005021294 #9 GCLC (ENSPCTG00005021190) KLHL31 (ENSPCTG00005021169) LRRC1 (ENSPCTG00005021134) MLIP (ENSPCTG00005020921) TINAG (ENSPCTG00005020766) FAM83B (ENSPCTG00005020744) HCRTR2 (ENSPCTG00005020624) GFRAL (ENSPCTG00005020543) HMGCLL1 (ENSPCTG00005020290) BMP5 (ENSPCTG00005020211) COL21A1 (ENSPCTG00005020038) DST (ENSPCTG00005015073) BEND6 (ENSPCTG00005014566) Blue whale MODERN SPECIES 2 RPS18 (ENSBMSG00010010743) VPS52 (ENSBMSG00010010756) ENSBMSG00010010769 HSD17B8 (ENSBMSG00010010786) SLC39A7 (ENSBMSG00010010802) RXRB (ENSBMSG00010010818) #7 COL11A2 (ENSBMSG00010010982) #8 ENSBMSG00010011366 #9 HLA-DOA (ENSBMSG00010011380) #12 BRD2 (ENSBMSG00010011399) #13 HLA-DMA (ENSBMSG00010011432) #15 HLA-DMB (ENSBMSG00010011446) #16 PSMB9 (ENSBMSG00010011462) #19 TAP1 (ENSBMSG00010011477) #20 PSMB8 (ENSBMSG00010011493) #21 TAP2 (ENSBMSG00010011505) #22 HLA-DOB (ENSBMSG00010011526) #23 ENSBMSG00010011564 GCLC (ENSBMSG00010011645) KLHL31 (ENSBMSG00010011739) LRRC1 (ENSBMSG00010011758) MLIP (ENSBMSG00010011840) TINAG (ENSBMSG00010011903) FAM83B (ENSBMSG00010011937) HCRTR2 (ENSBMSG00010011945) GFRAL (ENSBMSG00010011956) HMGCLL1 (ENSBMSG00010011994) BMP5 (ENSBMSG00010012051) ENSBMSG00010012065 ENSBMSG00010012074 ENSBMSG00010012133 Pecora ANCESTRAL SPECIES 21 ENSGT00940000161798 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.b ENSGT00940000155371.m.a.a ENSGT00940000154993 #26 ENSGT00940000155371.m.a.b.b ENSGT00940000155371.m.a.b.a ENSGT00940000161821.d ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 Percora_a ANCESTRAL SPECIES 12 ENSGT00940000161798 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Bovidae ANCESTRAL SPECIES 13 ENSGT00940000161798 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.nb #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Caprinae ANCESTRAL SPECIES 16 ENSGT00940000161798 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.nb #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Goat MODERN SPECIES 15 B3GALT4 (ENSCHIG00000013295) RPS18 (ENSCHIG00000025263) VPS52 (ENSCHIG00000023524) RING1 (ENSCHIG00000015685) HSD17B8 (ENSCHIG00000017839) SLC39A7 (ENSCHIG00000024209) RXRB (ENSCHIG00000010266) #7 COL11A2 (ENSCHIG00000012269) #8 HLA-DOA (ENSCHIG00000014302) #12 BRD2 (ENSCHIG00000013946) #13 HLA-DMA (ENSCHIG00000009464) #15 HLA-DMB (ENSCHIG00000026519) #16 PSMB9 (ENSCHIG00000021513) #19 TAP1 (ENSCHIG00000021983) #20 PSMB8 (ENSCHIG00000012829) #21 TAP2 (ENSCHIG00000017732) #22 ENSCHIG00000019853 HLA-DOB (ENSCHIG00000010527) #23 ENSCHIG00000013102 #24 ENSCHIG00000022158 ENSCHIG00000009662 GCLC (ENSCHIG00000013397) KLHL31 (ENSCHIG00000003573) LRRC1 (ENSCHIG00000021002) ENSCHIG00000020109 TINAG (ENSCHIG00000010892) FAM83B (ENSCHIG00000019707) HCRTR2 (ENSCHIG00000000459) GFRAL (ENSCHIG00000008200) HMGCLL1 (ENSCHIG00000017734) BMP5 (ENSCHIG00000010429) Rambouillet Sheep MODERN SPECIES 12 B3GALT4 (ENSOARG00020012594) RPS18 (ENSOARG00020012536) VPS52 (ENSOARG00020012385) RING1 (ENSOARG00020012299) HSD17B8 (ENSOARG00020012212) SLC39A7 (ENSOARG00020012152) RXRB (ENSOARG00020011980) #7 COL11A2 (ENSOARG00020011636) #8 HLA-DOA (ENSOARG00020011582) #12 BRD2 (ENSOARG00020011534) #13 HLA-DMA (ENSOARG00020025286) #15 HLA-DMB (ENSOARG00020025272) #16 ENSOARG00020025249 #19 TAP1 (ENSOARG00020025187) #20 PSMB8 (ENSOARG00020025156) #21 TAP2 (ENSOARG00020025129) #22 HLA-DOB (ENSOARG00020025120) #23 ENSOARG00020025111 #24 ENSOARG00020025100 DYA (ENSOARG00020025089) ENSOARG00020025077 #24 ENSOARG00020025038 ENSOARG00020025022 ENSOARG00020025012 GCLC (ENSOARG00020024970) KLHL31 (ENSOARG00020024949) LRRC1 (ENSOARG00020024930) TINAG (ENSOARG00020024710) ENSOARG00020024682 ENSOARG00020024669 FAM83B (ENSOARG00020024658) Bovinae ANCESTRAL SPECIES 9 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.nb.d #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Bos ANCESTRAL SPECIES 17 ENSGT00390000012691.d ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.nb.d #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Bos_a ANCESTRAL SPECIES 11 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.nb.d #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Wild yak MODERN SPECIES 401 ENSBMUG00000008818 VPS52 (ENSBMUG00000008802) RING1 (ENSBMUG00000008786) HSD17B8 (ENSBMUG00000008752) SLC39A7 (ENSBMUG00000008706) RXRB (ENSBMUG00000008461) #7 COL11A2 (ENSBMUG00000008342) #8 HLA-DOA (ENSBMUG00000008090) #12 BRD2 (ENSBMUG00000008066) #13 HLA-DMA (ENSBMUG00000008047) #15 HLA-DMB (ENSBMUG00000008003) #16 ENSBMUG00000007993 PSMB9 (ENSBMUG00000007982) #19 TAP1 (ENSBMUG00000007967) #20 PSMB8 (ENSBMUG00000007942) #21 TAP2 (ENSBMUG00000007931) #22 HLA-DOB (ENSBMUG00000007908) #23 ENSBMUG00000007890 #24 ENSBMUG00000007873 ENSBMUG00000006036 GCLC (ENSBMUG00000005430) KLHL31 (ENSBMUG00000005354) LRRC1 (ENSBMUG00000005342) Domestic yak MODERN SPECIES 16 WDR46 (ENSBGRG00000017950) B3GALT4 (ENSBGRG00000018285) VPS52 (ENSBGRG00000018459) RING1 (ENSBGRG00000018754) HSD17B8 (ENSBGRG00000018839) SLC39A7 (ENSBGRG00000018980) RXRB (ENSBGRG00000019018) #7 COL11A2 (ENSBGRG00000019137) #8 HLA-DOA (ENSBGRG00000021588) #12 BRD2 (ENSBGRG00000021629) #13 HLA-DMA (ENSBGRG00000021851) #15 HLA-DMB (ENSBGRG00000021922) #16 ENSBGRG00000021991 #19 TAP1 (ENSBGRG00000022060) #20 PSMB8 (ENSBGRG00000022108) #21 TAP2 (ENSBGRG00000022189) #22 HLA-DOB (ENSBGRG00000022347) #23 ENSBGRG00000022408 #24 ENSBGRG00000022452 ENSBGRG00000022508 ENSBGRG00000022571 GCLC (ENSBGRG00000022619) KLHL31 (ENSBGRG00000023447) LRRC1 (ENSBGRG00000023507) MLIP (ENSBGRG00000023693) ENSBGRG00000024111 TINAG (ENSBGRG00000024130) FAM83B (ENSBGRG00000024257) HCRTR2 (ENSBGRG00000024278) GFRAL (ENSBGRG00000024326) HMGCLL1 (ENSBGRG00000024393) Bos_b ANCESTRAL SPECIES 8 ENSGT00390000012691.d ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.nb.d #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Cow MODERN SPECIES 15 RPS18 (ENSBTAG00000002648) VPS52 (ENSBTAG00000002643) RING1 (ENSBTAG00000018884) HSD17B8 (ENSBTAG00000020927) SLC39A7 (ENSBTAG00000008191) RXRB (ENSBTAG00000000602) #7 COL11A2 (ENSBTAG00000000601) #8 BOLA-DOA (ENSBTAG00000006490) #12 BRD2 (ENSBTAG00000011074) #13 BOLA-DMA (ENSBTAG00000015730) #15 BOLA-DMB (ENSBTAG00000012451) #16 H2B (ENSBTAG00000051545) PSMB9 (ENSBTAG00000008954) #19 TAP1 (ENSBTAG00000008953) #20 PSMB8 (ENSBTAG00000003039) #21 TAP2 (ENSBTAG00000003038) #22 BOLA-DOB (ENSBTAG00000047707) #23 BOLA-DYB (ENSBTAG00000045923) #24 BOLA-DYA (ENSBTAG00000002581) DSB (ENSBTAG00000050757) GCLC (ENSBTAG00000015571) KLHL31 (ENSBTAG00000018167) LRRC1 (ENSBTAG00000017533) MLIP (ENSBTAG00000014581) TINAG (ENSBTAG00000012652) FAM83B (ENSBTAG00000016058) HCRTR2 (ENSBTAG00000011719) GFRAL (ENSBTAG00000012973) HMGCLL1 (ENSBTAG00000025718) BMP5 (ENSBTAG00000012870) ENSBTAG00000046193 Hybrid Bos Indicus MODERN SPECIES 15 RPS18 (ENSBIXG00005006736) VPS52 (ENSBIXG00005014413) RING1 (ENSBIXG00005006128) HSD17B8 (ENSBIXG00005001937) SLC39A7 (ENSBIXG00005014473) RXRB (ENSBIXG00005014520) #7 COL11A2 (ENSBIXG00005014598) #8 HLA-DOA (ENSBIXG00005014640) #12 BRD2 (ENSBIXG00005014704) #13 HLA-DMA (ENSBIXG00005014743) #15 HLA-DMB (ENSBIXG00005014762) #16 ENSBIXG00005014770 PSMB9 (ENSBIXG00005014787) #19 TAP1 (ENSBIXG00005014801) #20 PSMB8 (ENSBIXG00005014824) #21 TAP2 (ENSBIXG00005014872) #22 HLA-DOB (ENSBIXG00005014905) #23 ENSBIXG00005007128 #24 ENSBIXG00005014931 ENSBIXG00005014945 GCLC (ENSBIXG00005015026) KLHL31 (ENSBIXG00005007502) LRRC1 (ENSBIXG00005002222) ENSBIXG00005015134 MLIP (ENSBIXG00005015301) TINAG (ENSBIXG00005015398) FAM83B (ENSBIXG00005015427) HCRTR2 (ENSBIXG00005002278) GFRAL (ENSBIXG00005006745) HMGCLL1 (ENSBIXG00005015587) BMP5 (ENSBIXG00005015628) American bison MODERN SPECIES 3186 RPS18 (ENSBBBG00000003625) VPS52 (ENSBBBG00000003598) RING1 (ENSBBBG00000003692) HSD17B8 (ENSBBBG00000003696) SLC39A7 (ENSBBBG00000014969) RXRB (ENSBBBG00000015089) #7 ENSBBBG00000003746 #8 HLA-DOA (ENSBBBG00000015112) #12 BRD2 (ENSBBBG00000002785) #13 HLA-DMA (ENSBBBG00000015169) #15 HLA-DMB (ENSBBBG00000008914) #16 ENSBBBG00000015200 PSMB9 (ENSBBBG00000003777) #19 TAP1 (ENSBBBG00000015234) #20 PSMB8 (ENSBBBG00000015244) #21 TAP2 (ENSBBBG00000015257) #22 HLA-DOB (ENSBBBG00000015275) #23 ENSBBBG00000015280 #24 ENSBBBG00000015297 ENSBBBG00000015836 GCLC (ENSBBBG00000015998) KLHL31 (ENSBBBG00000002569) LRRC1 (ENSBBBG00000016027) MLIP (ENSBBBG00000016140) TINAG (ENSBBBG00000016191) FAM83B (ENSBBBG00000016205) HCRTR2 (ENSBBBG00000009059) GFRAL (ENSBBBG00000016261) HMGCLL1 (ENSBBBG00000016300) BMP5 (ENSBBBG00000016316) COL21A1 (ENSBBBG00000016434) Yarkand deer MODERN SPECIES 30 RGL2 (ENSCHYG00000004896) PFDN6 (ENSCHYG00000004871) WDR46 (ENSCHYG00000004759) B3GALT4 (ENSCHYG00000004743) RPS18 (ENSCHYG00000004733) VPS52 (ENSCHYG00000004695) RING1 (ENSCHYG00000004682) COL11A2 (ENSCHYG00000004624) #8 HLA-DOA (ENSCHYG00000004561) #12 BRD2 (ENSCHYG00000004539) #13 HLA-DMA (ENSCHYG00000004520) #15 HLA-DMB (ENSCHYG00000004514) #16 ENSCHYG00000004500 #19 TAP1 (ENSCHYG00000004483) #20 PSMB8 (ENSCHYG00000004467) #21 TAP2 (ENSCHYG00000004426) #22 HLA-DOB (ENSCHYG00000004391) #23 ENSCHYG00000004368 #24 ENSCHYG00000004358 ENSCHYG00000004336 GCLC (ENSCHYG00000004293) KLHL31 (ENSCHYG00000004258) LRRC1 (ENSCHYG00000004239) TINAG (ENSCHYG00000004199) MLIP (ENSCHYG00000004113) FAM83B (ENSCHYG00000004082) HCRTR2 (ENSCHYG00000004073) GFRAL (ENSCHYG00000004059) ENSCHYG00000003978 BMP5 (ENSCHYG00000003939) COL21A1 (ENSCHYG00000003914) Laurasiatheria_b ANCESTRAL SPECIES 7 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000160997 ENSGT00940000154993 #26 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b ENSGT00940000162975 ENSGT00940000155779.a.b ENSGT00940000162382 ENSGT00920000149187 ENSGT00940000160798 ENSGT00940000155565 ENSGT00940000158338 Carnivora ANCESTRAL SPECIES 4 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000154993 #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 Caniformia ANCESTRAL SPECIES 3 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000161847 ENSGT00940000154993 #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 ENSGT00940000162450.p ENSGT00940000163287 ENSGT00390000002471 Caniformia_b ANCESTRAL SPECIES 6 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000154993 #26 ENSGT00940000160997 ENSGT00940000155371.n ENSGT00940000161847 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 ENSGT00940000162450.p ENSGT00940000163287 ENSGT00390000002471 Ursidae ANCESTRAL SPECIES 37 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00950000183198.c.a.b.b.j ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000161847 ENSGT00940000160997 ENSGT00940000162484.d ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 ENSGT00940000162450.p.a ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 Ursus ANCESTRAL SPECIES 53 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00950000183198.c.a.b.b.j ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000160997 ENSGT00940000162484.d Polar bear MODERN SPECIES 184 RING1 (ENSUMAG00000012543) HSD17B8 (ENSUMAG00000012548) SLC39A7 (ENSUMAG00000012560) RXRB (ENSUMAG00000012569) #7 ENSUMAG00000012592 #8 ENSUMAG00000012616 #11 HLA-DOA (ENSUMAG00000012626) #12 ENSUMAG00000012634 #13 ENSUMAG00000012662 #13 HLA-DMA (ENSUMAG00000012683) #15 HLA-DMB (ENSUMAG00000012688) #16 ENSUMAG00000012692 PSMB9 (ENSUMAG00000012694) #19 TAP1 (ENSUMAG00000012701) #20 PSMB8 (ENSUMAG00000012731) #21 TAP2 (ENSUMAG00000012745) #22 HLA-DOB (ENSUMAG00000012747) #23 ENSUMAG00000012755 ENSUMAG00000012761 HLA-DQB2 (ENSUMAG00000012766) #24 ENSUMAG00000012768 ENSUMAG00000012771 HLA-DRA (ENSUMAG00000012775) ENSUMAG00000012781 American black bear MODERN SPECIES 3108 PSMB9 (ENSUAMG00000013935) #19 TAP1 (ENSUAMG00000013932) #20 PSMB8 (ENSUAMG00000013929) #21 TAP2 (ENSUAMG00000013187) #22 HLA-DOB (ENSUAMG00000013172) #23 ENSUAMG00000013161 #24 Giant Panda MODERN SPECIES 15 VPS52 (ENSAMEG00000001640) RING1 (ENSAMEG00000001680) HSD17B8 (ENSAMEG00000001698) SLC39A7 (ENSAMEG00000001707) RXRB (ENSAMEG00000001719) #7 COL11A2 (ENSAMEG00000001744) #8 ENSAMEG00000001900 #9 HLA-DPA1 (ENSAMEG00000001901) #11 HLA-DOA (ENSAMEG00000001908) #12 BRD2 (ENSAMEG00000001926) #13 HLA-DMB (ENSAMEG00000001952) #16 ENSAMEG00000027435 PSMB9 (ENSAMEG00000001961) #19 TAP1 (ENSAMEG00000001976) #20 PSMB8 (ENSAMEG00000002026) #21 TAP2 (ENSAMEG00000002044) #22 HLA-DOB (ENSAMEG00000029901) #23 ENSAMEG00000026802 #24 ENSAMEG00000024677 ENSAMEG00000002342 HLA-DRA (ENSAMEG00000002390) BTNL2 (ENSAMEG00000002403) ENSAMEG00000002462 ENSAMEG00000002434 ENSAMEG00000024700 ENSAMEG00000002606 NOTCH4 (ENSAMEG00000002549) GPSM3 (ENSAMEG00000002539) PBX2 (ENSAMEG00000002519) AGER (ENSAMEG00000002492) RNF5 (ENSAMEG00000002477) Mustelinae ANCESTRAL SPECIES 65 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 American mink MODERN SPECIES 609 HSD17B8 (ENSNVIG00000006535) SLC39A7 (ENSNVIG00000006519) RXRB (ENSNVIG00000006480) #7 COL11A2 (ENSNVIG00000006062) #8 ENSNVIG00000004899 #9 HLA-DPA1 (ENSNVIG00000004863) #11 HLA-DOA (ENSNVIG00000004843) #12 BRD2 (ENSNVIG00000004773) #13 HLA-DMA (ENSNVIG00000004747) #15 HLA-DMB (ENSNVIG00000004727) #16 PSMB9 (ENSNVIG00000004695) #19 TAP1 (ENSNVIG00000004678) #20 PSMB8 (ENSNVIG00000004658) #21 TAP2 (ENSNVIG00000004605) #22 HLA-DOB (ENSNVIG00000004582) #23 Ferret MODERN SPECIES 318 RING1 (ENSMPUG00000002279) SLC39A7 (ENSMPUG00000002276) RXRB (ENSMPUG00000002273) #7 COL11A2 (ENSMPUG00000001968) #8 ENSMPUG00000001964 #9 HLA-DPA1 (ENSMPUG00000001961) #11 ENSMPUG00000001959 HLA-DOA (ENSMPUG00000001958) #12 BRD2 (ENSMPUG00000001955) #13 ENSMPUG00000001954 HLA-DMA (ENSMPUG00000001944) #15 HLA-DMB (ENSMPUG00000001943) #16 PSMB9 (ENSMPUG00000001940) #19 TAP1 (ENSMPUG00000001935) #20 PSMB8 (ENSMPUG00000001933) #21 ENSMPUG00000001931 #22 ENSMPUG00000001924 #23 Canidae ANCESTRAL SPECIES 6 ENSGT00390000008815.g.b ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000162450.p ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b ENSGT00940000162975 Canis_lupus ANCESTRAL SPECIES 11 ENSGT00390000012691.c.b ENSGT00390000008815.g.b ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000162450.o ENSGT00940000162450.p ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b Dog MODERN SPECIES 3 B3GALT4 (ENSCAFG00845020962) RPS18 (ENSCAFG00845020845) VPS52 (ENSCAFG00845020730) RING1 (ENSCAFG00845020668) HSD17B8 (ENSCAFG00845020603) SLC39A7 (ENSCAFG00845020536) RXRB (ENSCAFG00845020447) #7 COL11A2 (ENSCAFG00845019587) #8 ENSCAFG00845019114 #9 DLA-DOA (ENSCAFG00845018933) #12 BRD2 (ENSCAFG00845018726) #13 DLA-DMA (ENSCAFG00845018613) #15 DLA-DMB (ENSCAFG00845018536) #16 PSMB9 (ENSCAFG00845018485) #19 PSMB8 (ENSCAFG00845018353) #20 TAP2 (ENSCAFG00845017879) #22 HLA-DQB2 (ENSCAFG00845017781) #24 DLA-DQA1 (ENSCAFG00845017728) DLA-DRA (ENSCAFG00845017467) ENSCAFG00845017367 BTNL2 (ENSCAFG00845017222) ENSCAFG00845017104 ENSCAFG00845016990 ENSCAFG00845016861 ENSCAFG00845016831 ENSCAFG00845016762 ENSCAFG00845016724 GPSM3 (ENSCAFG00845016471) PBX2 (ENSCAFG00845016393) AGER (ENSCAFG00845014982) RNF5 (ENSCAFG00845014858) Dingo MODERN SPECIES 276 ENSCAFG00020003224 RING1 (ENSCAFG00020003221) HSD17B8 (ENSCAFG00020003175) SLC39A7 (ENSCAFG00020003166) RXRB (ENSCAFG00020003098) #7 ENSCAFG00020003093 #8 ENSCAFG00020003072 #8 ENSCAFG00020002592 #9 HLA-DOA (ENSCAFG00020002545) #12 BRD2 (ENSCAFG00020002542) #13 HLA-DMA (ENSCAFG00020002536) #15 HLA-DMB (ENSCAFG00020002532) #16 PSMB9 (ENSCAFG00020002528) #19 TAP1 (ENSCAFG00020002523) #20 PSMB8 (ENSCAFG00020002521) #21 TAP2 (ENSCAFG00020001827) #22 HLA-DOB (ENSCAFG00020001693) #23 ENSCAFG00020001685 #24 HLA-DQB1 (ENSCAFG00020001679) #24 ENSCAFG00020001673 ENSCAFG00020001671 HLA-DRA (ENSCAFG00020001663) ENSCAFG00020001656 BTNL2 (ENSCAFG00020001628) ENSCAFG00020001614 ENSCAFG00020001606 ENSCAFG00020001600 ENSCAFG00020001586 ENSCAFG00020001581 ENSCAFG00020001552 GPSM3 (ENSCAFG00020001306) Red fox MODERN SPECIES 7 RPS18 (ENSVVUG00000025443) ENSVVUG00000025286 RING1 (ENSVVUG00000025271) HSD17B8 (ENSVVUG00000025268) SLC39A7 (ENSVVUG00000025265) RXRB (ENSVVUG00000025262) #7 ENSVVUG00000025174 #9 HLA-DPA1 (ENSVVUG00000025137) #11 HLA-DOA (ENSVVUG00000025133) #12 BRD2 (ENSVVUG00000025130) #13 HLA-DMA (ENSVVUG00000025127) #15 HLA-DMB (ENSVVUG00000025122) #16 PSMB9 (ENSVVUG00000025119) #19 TAP1 (ENSVVUG00000025116) #20 PSMB8 (ENSVVUG00000025115) #21 TAP2 (ENSVVUG00000025111) #22 HLA-DOB (ENSVVUG00000025078) #23 ENSVVUG00000025071 #24 Felidae ANCESTRAL SPECIES 5 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762.cc #8 ENSGT00940000162390.q #9 ENSGT00940000162390.p #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.n.a.b ENSGT00940000155371.n.a.a ENSGT00940000154993 #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450.q ENSGT00940000163287.b ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b Panthera ANCESTRAL SPECIES 7 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762.cc #8 ENSGT00940000162390.p #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.n.a.b ENSGT00940000155371.n.a.a ENSGT00940000154993.a.a #26 ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079 ENSGT00530000064839 ENSGT00940000162450.q ENSGT00940000163287.b ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b Tiger MODERN SPECIES 415 RING1 (ENSPTIG00000005545) HSD17B8 (ENSPTIG00000005554) SLC39A7 (ENSPTIG00000005581) RXRB (ENSPTIG00000005607) #7 COL11A2 (ENSPTIG00000005735) #8 HLA-DPB1 (ENSPTIG00000005931) #9 HLA-DPA1 (ENSPTIG00000005948) #11 HLA-DOA (ENSPTIG00000005964) #12 BRD2 (ENSPTIG00000005977) #13 ENSPTIG00000006002 #14 HLA-DMA (ENSPTIG00000006011) #15 HLA-DMB (ENSPTIG00000006035) #16 PSMB9 (ENSPTIG00000006050) #19 TAP1 (ENSPTIG00000006078) #20 PSMB8 (ENSPTIG00000006141) #21 TAP2 (ENSPTIG00000006162) #22 HLA-DOB (ENSPTIG00000006225) #23 ENSPTIG00000006266 ENSPTIG00000006308 HLA-DRA (ENSPTIG00000006439) ENSPTIG00000006461 #26 BTNL2 (ENSPTIG00000006701) ENSPTIG00000006731 ENSPTIG00000006752 ENSPTIG00000006805 ENSPTIG00000006816 NOTCH4 (ENSPTIG00000006842) GPSM3 (ENSPTIG00000006883) PBX2 (ENSPTIG00000006899) AGER (ENSPTIG00000006921) RNF5 (ENSPTIG00000007005) Panthera_a ANCESTRAL SPECIES 4 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762.cc #8 ENSGT00940000162390.p #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.n.a.a lion MODERN SPECIES 5 RING1 (ENSPLOG00000009313) HSD17B8 (ENSPLOG00000009241) SLC39A7 (ENSPLOG00000009206) RXRB (ENSPLOG00000009094) #7 COL11A2 (ENSPLOG00000007928) #8 ENSPLOG00000007166 #9 HLA-DPA1 (ENSPLOG00000006949) #11 HLA-DOA (ENSPLOG00000006926) #12 BRD2 (ENSPLOG00000006871) #13 HLA-DMA (ENSPLOG00000006786) #15 HLA-DMB (ENSPLOG00000006753) #16 ENSPLOG00000006735 PSMB9 (ENSPLOG00000006713) #19 TAP1 (ENSPLOG00000006688) #20 PSMB8 (ENSPLOG00000006662) #21 TAP2 (ENSPLOG00000006623) #22 HLA-DOB (ENSPLOG00000006603) #23 ENSPLOG00000006575 leopard MODERN SPECIES 30 HSD17B8 (ENSPPRG00000008960) SLC39A7 (ENSPPRG00000009227) RXRB (ENSPPRG00000010222) #7 COL11A2 (ENSPPRG00000001194) #8 HLA-DPB1 (ENSPPRG00000002022) #9 HLA-DPA1 (ENSPPRG00000002267) #11 HLA-DOA (ENSPPRG00000002484) #12 ENSPPRG00000002715 #13 ENSPPRG00000003003 #13 ENSPPRG00000003175 #14 HLA-DMA (ENSPPRG00000004582) #15 HLA-DMB (ENSPPRG00000004964) #16 PSMB9 (ENSPPRG00000008776) #19 TAP1 (ENSPPRG00000009806) #20 PSMB8 (ENSPPRG00000010024) #21 TAP2 (ENSPPRG00000010234) #22 HLA-DOB (ENSPPRG00000010507) #23 Cat DUPLICATION Cat MODERN SPECIES 236 ENSFCAG00000046098 ENSFCAG00000050544 ENSFCAG00000042526 #7 ENSFCAG00000046454 #8 ENSFCAG00000047214 #8 ENSFCAG00000041523 #9 ENSFCAG00000012247 #11 ENSFCAG00000009697 #12 ENSFCAG00000009696 #13 ENSFCAG00000041486 #15 ENSFCAG00000040910 #16 ENSFCAG00000051485 ENSFCAG00000030632 #19 ENSFCAG00000042806 #20 ENSFCAG00000023131 #21 ENSFCAG00000035701 #22 ENSFCAG00000041575 #23 ENSFCAG00000046253 ENSFCAG00000029158 BTNL2 (ENSFCAG00000001685) ENSFCAG00000028529 ENSFCAG00000024834 ENSFCAG00000045335 ENSFCAG00000037191 GPSM3 (ENSFCAG00000016212) PBX2 (ENSFCAG00000004530) AGER (ENSFCAG00000004529) RNF5 (ENSFCAG00000004528) AGPAT1 (ENSFCAG00000035621) EGFL8 (ENSFCAG00000022700) PPT2 (ENSFCAG00000004526) Cat MODERN SPECIES 236 ENSFCAG00000004010 ENSFCAG00000043560 ENSFCAG00000006984 ENSFCAG00000006981 #7 COL11A2 (ENSFCAG00000004005) #8 ENSFCAG00000041258 #9 ENSFCAG00000044012 #11 ENSFCAG00000042732 #12 ENSFCAG00000042841 #13 ENSFCAG00000009442 #15 ENSFCAG00000045369 #16 ENSFCAG00000050701 ENSFCAG00000044069 #19 ENSFCAG00000042456 #20 ENSFCAG00000043821 #21 ENSFCAG00000045700 #22 ENSFCAG00000009202 ENSFCAG00000040474 #23 ENSFCAG00000041443 ENSFCAG00000052131 ENSFCAG00000053744 DAXX (ENSFCAG00000004020) ENSFCAG00000049571 ENSFCAG00000043390 ENSFCAG00000029182 ENSFCAG00000028199 ENSFCAG00000051171 ENSFCAG00000052529 ENSFCAG00000041843 VPS52 (ENSFCAG00000004011) ENSFCAG00000041942 Laurasiatheria_c ANCESTRAL SPECIES 6 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079.d ENSGT00530000064839 ENSGT00940000162450 ENSGT00940000163287 ENSGT00390000002471 ENSGT00940000160293 ENSGT00890000139566 ENSGT00390000014107.a.b ENSGT00390000008726.h.b Chiroptera ANCESTRAL SPECIES 3 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000162892 #25 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.n ENSGT00940000160997 ENSGT00940000162484.f ENSGT00940000164957 ENSGT00940000162079.d Megabat MODERN SPECIES 3233 PSMB9 (ENSPVAG00000002804) #19 TAP1 (ENSPVAG00000002802) #20 PSMB8 (ENSPVAG00000002800) #21 TAP2 (ENSPVAG00000002794) #22 HLA-DOB (ENSPVAG00000002791) #23 Microchiroptera ANCESTRAL SPECIES 4 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498 #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000162892 #25 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.n ENSGT00940000160997 ENSGT00940000162484.f ENSGT00940000164957 ENSGT00940000162079.d Greater horseshoe bat MODERN SPECIES 21 ENSRFEG00010014573 VPS52 (ENSRFEG00010014510) RING1 (ENSRFEG00010014424) HSD17B8 (ENSRFEG00010014277) SLC39A7 (ENSRFEG00010014223) RXRB (ENSRFEG00010014125) #7 COL11A2 (ENSRFEG00010013940) #8 HLA-DPB1 (ENSRFEG00010013529) #9 HLA-DPA1 (ENSRFEG00010013424) #11 HLA-DOA (ENSRFEG00010013359) #12 BRD2 (ENSRFEG00010013276) #13 ENSRFEG00010012948 #15 PSMB9 (ENSRFEG00010012800) #19 TAP1 (ENSRFEG00010012779) #20 PSMB8 (ENSRFEG00010012709) #21 TAP2 (ENSRFEG00010012594) #22 HLA-DOB (ENSRFEG00010012534) #23 ENSRFEG00010012490 ENSRFEG00010012374 ENSRFEG00010010765 #24 ENSRFEG00010010549 HLA-DQB2 (ENSRFEG00010010410) #24 ENSRFEG00010010287 ENSRFEG00010010222 HLA-DRA (ENSRFEG00010010177) ENSRFEG00010010130 BTNL2 (ENSRFEG00010004871) ENSRFEG00010004851 ENSRFEG00010004842 ENSRFEG00010004830 ENSRFEG00010004789 Microbat MODERN SPECIES 1885 HLA-DMA (ENSMLUG00000005494) #15 HLA-DMB (ENSMLUG00000009907) #16 ENSMLUG00000026627 PSMB9 (ENSMLUG00000013890) #19 TAP1 (ENSMLUG00000013880) #20 PSMB8 (ENSMLUG00000013876) #21 TAP2 (ENSMLUG00000013870) #22 Equus ANCESTRAL SPECIES 10 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00860000136081 #14 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.n.g.b ENSGT00940000155371.n.h ENSGT00940000154723.b.y #24 ENSGT00940000161821.c.b ENSGT00940000154723.b.z.a #24 ENSGT00940000161821.c.a ENSGT00940000155371.n.g.a ENSGT00940000160997 ENSGT00940000162484 ENSGT00940000164957 ENSGT00940000162079.d ENSGT00860000135184.d.b.a ENSGT00980000198488.m.a.a.b.a.a.b.c.b ENSGT00530000064839 Horse MODERN SPECIES 12 B3GALT4 (ENSECAG00000052593) VPS52 (ENSECAG00000019702) RING1 (ENSECAG00000013736) HSD17B8 (ENSECAG00000058465) SLC39A7 (ENSECAG00000004794) RXRB (ENSECAG00000023041) #7 COL11A2 (ENSECAG00000029028) #8 HLA-DOA (ENSECAG00000006603) #12 BRD2 (ENSECAG00000012089) #13 ENSECAG00000042051 #14 HLA-DMA (ENSECAG00000003669) #15 HLA-DMB (ENSECAG00000021796) #16 TAP1 (ENSECAG00000022610) #20 PSMB8 (ENSECAG00000018887) #21 PSMB9 (ENSECAG00000016898) #19 TAP2 (ENSECAG00000007152) #22 HLA-DOB (ENSECAG00000020976) #23 ENSECAG00000012933 ENSECAG00000020358 ENSECAG00000052533 #24 ENSECAG00000009142 ENSECAG00000017143 #24 Eqca-DQA1 (ENSECAG00000024259) ENSECAG00000022072 HLA-DRA (ENSECAG00000012660) ENSECAG00000033265 BTNL2 (ENSECAG00000011452) ENSECAG00000016943 ENSECAG00000014398 ENSECAG00000038583 ENSECAG00000056152 Donkey MODERN SPECIES 28 B3GALT4 (ENSEASG00005035058) RPS18 (ENSEASG00005020817) VPS52 (ENSEASG00005020809) RING1 (ENSEASG00005020805) SLC39A7 (ENSEASG00005020798) RXRB (ENSEASG00005020792) #7 COL11A2 (ENSEASG00005030115) #8 HLA-DOA (ENSEASG00005020773) #12 BRD2 (ENSEASG00005020770) #13 ENSEASG00005032605 #14 HLA-DMA (ENSEASG00005020764) #15 HLA-DMB (ENSEASG00005020759) #16 PSMB9 (ENSEASG00005020754) #19 TAP1 (ENSEASG00005020750) #20 PSMB8 (ENSEASG00005020748) #21 TAP2 (ENSEASG00005020743) #22 ENSEASG00005020739 #23 ENSEASG00005017377 ENSEASG00005033717 #23 ENSEASG00005014836 ENSEASG00005020693 ENSEASG00005031301 HLA-DQB1 (ENSEASG00005012362) #24 ENSEASG00005003380 #24 ENSEASG00005006994 ENSEASG00005023862 ENSEASG00005020694 BTNL2 (ENSEASG00005037724) ENSEASG00005035285 ENSEASG00005037345 ENSEASG00005031262 Atlantogenata ANCESTRAL SPECIES 3 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498.r #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993 #26 ENSGT00940000155371 ENSGT00940000160997 ENSGT00940000162484 Afrotheria ANCESTRAL SPECIES 83 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498.r #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000160997.m ENSGT00940000162484 Afrotheria_a ANCESTRAL SPECIES 84 ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160668 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498.r #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000160997.m ENSGT00940000162484 Hyrax MODERN SPECIES 7111 PSMB9 (ENSPCAG00000016827) #19 TAP1 (ENSPCAG00000016767) #20 PSMB8 (ENSPCAG00000016741) #21 TAP2 (ENSPCAG00000016678) #22 Elephant MODERN SPECIES 14 ENSLAFG00000032173 VPS52 (ENSLAFG00000004472) RING1 (ENSLAFG00000021706) HSD17B8 (ENSLAFG00000030087) SLC39A7 (ENSLAFG00000002138) RXRB (ENSLAFG00000002141) #7 COL11A2 (ENSLAFG00000009548) #8 ENSLAFG00000029575 #9 HLA-DOA (ENSLAFG00000014863) #12 BRD2 (ENSLAFG00000016104) #13 HLA-DMA (ENSLAFG00000005738) #15 HLA-DMB (ENSLAFG00000004768) #16 PSMB9 (ENSLAFG00000025736) #19 TAP1 (ENSLAFG00000003214) #20 PSMB8 (ENSLAFG00000003213) #21 TAP2 (ENSLAFG00000028298) #22 HLA-DOB (ENSLAFG00000004052) #23 ENSLAFG00000029261 #24 ENSLAFG00000030016 #24 ENSLAFG00000018482 #24 ENSLAFG00000031292 ENSLAFG00000001026 BTNL2 (ENSLAFG00000001025) Tenrec DUPLICATION Tenrec MODERN SPECIES 8432 PSMB9 (ENSETEG00000013343) #19 ENSETEG00000013337 #20 PSMB8 (ENSETEG00000013333) #21 ENSETEG00000013330 #22 HLA-DOB (ENSETEG00000013327) #23 ENSETEG00000013324 #22 Tenrec MODERN SPECIES 8432 ENSETEG00000013324 #22 HLA-DOB (ENSETEG00000013327) #23 ENSETEG00000013330 #22 PSMB8 (ENSETEG00000013333) #21 ENSETEG00000013337 #20 PSMB9 (ENSETEG00000013343) #19 Xenarthra ANCESTRAL SPECIES 66 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 ENSGT00940000160076 ENSGT00940000159208.B #7 ENSGT00940000159762 #8 ENSGT00940000162390 #9 ENSGT00940000162498.r #11 ENSGT00940000162112 #12 ENSGT00940000153385.b.a.b #13 ENSGT00940000161157 #15 ENSGT00940000160381 #16 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 Armadillo MODERN SPECIES 4056 ENSDNOG00000041084 RING1 (ENSDNOG00000019606) SLC39A7 (ENSDNOG00000015430) RXRB (ENSDNOG00000015431) #7 COL11A2 (ENSDNOG00000047004) #8 ENSDNOG00000037384 #9 ENSDNOG00000045287 #9 HLA-DPA1 (ENSDNOG00000043328) #11 HLA-DOA (ENSDNOG00000030617) #12 BRD2 (ENSDNOG00000006186) #13 HLA-DMA (ENSDNOG00000002005) #15 HLA-DMB (ENSDNOG00000045752) #16 PSMB9 (ENSDNOG00000035353) #19 TAP1 (ENSDNOG00000024030) #20 PSMB8 (ENSDNOG00000045248) #21 TAP2 (ENSDNOG00000034243) #22