Mammalia	ANCESTRAL SPECIES	89	ENSGT00390000012691.d	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00980000198488.n	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000155371	ENSGT00940000160997 #28	ENSGT00950000183127.b	ENSGT00940000161847	ENSGT00940000154723 #24
Theria	ANCESTRAL SPECIES	4	ENSGT00940000161798	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00980000198488.n	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36	ENSGT00940000162975 #37	ENSGT00940000155779.a.b	ENSGT00940000162382	ENSGT00920000149187	ENSGT00940000160798	ENSGT00940000155565	ENSGT00940000158338	ENSGT01030000235045	ENSGT00940000155739	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000158255
Eutheria	ANCESTRAL SPECIES	9	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993 #26	ENSGT00940000155371	ENSGT00940000161847	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000154993 #26	ENSGT00940000155371	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34
Primates	ANCESTRAL SPECIES	5	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000154993 #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000154993 #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00530000064839 #30	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36	ENSGT00940000162975 #37	ENSGT00940000155779.a.b
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000162892.a.a ##25	ENSGT00940000154993.m.a.b ##26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00530000064839 #30	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36	ENSGT00940000162975 #37	ENSGT00940000155779.a.b
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.m.a ##24	ENSGT00940000162892.a.a ##25	ENSGT00940000154993.m.a.b ##26	ENSGT00940000154993.m.b #26	ENSGT00940000154993.m.a.a #27	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00530000064839 #30	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.m.a ##24	ENSGT00940000162892.a.a ##25	ENSGT00940000154993.m.a.b ##26	ENSGT00940000154993.m.b #26	ENSGT00940000154993.m.a.a #27	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00530000064839 #30	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34
Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.m.a ##24	ENSGT00940000162892.a.a ##25	ENSGT00940000154993.m.a.a #27	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00530000064839 #30	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36
Orangutan	MODERN SPECIES	19	RING1 (ENSPPYG00000017242) #7	HSD17B8 (ENSPPYG00000017241) #8	SLC39A7 (ENSPPYG00000017240) #9	RXRB (ENSPPYG00000017239) #10	COL11A2 (ENSPPYG00000017238) #11	HLA-DPA1 (ENSPPYG00000017229) #12	ENSPPYG00000029571 #13	HLA-DOA (ENSPPYG00000016495) #14	BRD2 (ENSPPYG00000017228) #15	ENSPPYG00000031820 #16	ENSPPYG00000017227 #17	HLA-DMB (ENSPPYG00000017226) #18	PSMB9 (ENSPPYG00000017225) #19	TAP1 (ENSPPYG00000017224) #20	PSMB8 (ENSPPYG00000017223) #21	TAP2 (ENSPPYG00000017222) #22	HLA-DOB (ENSPPYG00000017221) #23	HLA-DQB2 (ENSPPYG00000017220) #24	HLA-DQA2 (ENSPPYG00000017219) #25	ENSPPYG00000017216 #26	HLA-DRB1 (ENSPPYG00000016490) #27	HLA-DRA (ENSPPYG00000017234) #28	BTNL2 (ENSPPYG00000017215) #29	TSBP1 (ENSPPYG00000016489) #30	NOTCH4 (ENSPPYG00000016488) #31	GPSM3 (ENSPPYG00000016487) #32	PBX2 (ENSPPYG00000016486) #33	AGER (ENSPPYG00000016485) #34	RNF5 (ENSPPYG00000016484) #35	AGPAT1 (ENSPPYG00000016483) #36	EGFL8 (ENSPPYG00000041054) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.m.a ##24	ENSGT00940000162892.a.a ##25	ENSGT00940000154993.m.a.a #27	ENSGT00940000154993.m.a.b ##26	ENSGT00940000154993.m.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00530000064839 #30	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34
Gorilla	MODERN SPECIES	19	RING1 (ENSGGOG00000009842) #7	HSD17B8 (ENSGGOG00000009838) #8	SLC39A7 (ENSGGOG00000009830) #9	RXRB (ENSGGOG00000009823) #10	COL11A2 (ENSGGOG00000009799) #11	HLA-DPB1 (ENSGGOG00000013630) #13	HLA-DPA1 (ENSGGOG00000013625) #12	HLA-DOA (ENSGGOG00000010653) #14	ENSGGOG00000005838 #16	BRD2 (ENSGGOG00000043461) #15	ENSGGOG00000005835 #17	HLA-DMB (ENSGGOG00000022404) #18	PSMB9 (ENSGGOG00000010965) #19	TAP1 (ENSGGOG00000010958) #20	PSMB8 (ENSGGOG00000010953) #21	TAP2 (ENSGGOG00000010941) #22	HLA-DOB (ENSGGOG00000043194) #23	HLA-DQB2 (ENSGGOG00000014413) #24	ENSGGOG00000037744 #25	HLA-DQB1 (ENSGGOG00000004252) ##24	HLA-DQA1 (ENSGGOG00000013538) ##25	ENSGGOG00000000700 #26	HLA-DRB5 (ENSGGOG00000037929) ##26	HLA-DRA (ENSGGOG00000009861) #28	BTNL2 (ENSGGOG00000009855) #29	TSBP1 (ENSGGOG00000040681) #30	NOTCH4 (ENSGGOG00000002332) #31	GPSM3 (ENSGGOG00000002329) #32	PBX2 (ENSGGOG00000002325) #33	AGER (ENSGGOG00000002323) #34	RNF5 (ENSGGOG00000002320) #35
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.m.a ##24	ENSGT00940000162892.a.a ##25	ENSGT00940000154993.m.a.a #27	ENSGT00940000154993.m.a.b ##26	ENSGT00940000154993.m.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00530000064839 #30	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34
Pan	ANCESTRAL SPECIES	5	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.m.a ##24	ENSGT00940000162892.a.a ##25	ENSGT00940000154993.m.a.b ##26	ENSGT00940000154993.m.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00530000064839 #30	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b.w #35
Chimpanzee	MODERN SPECIES	19	RING1 (ENSPTRG00000018037) #7	HSD17B8 (ENSPTRG00000018036) #8	SLC39A7 (ENSPTRG00000018035) #9	RXRB (ENSPTRG00000018034) #10	COL11A2 (ENSPTRG00000018033) #11	HLA-DPB1 (ENSPTRG00000018030) #13	HLA-DPA1 (ENSPTRG00000018029) #12	HLA-DOA (ENSPTRG00000018028) #14	ENSPTRG00000018027 #16	BRD2 (ENSPTRG00000042676) #15	ENSPTRG00000018026 #17	PATR-DMB (ENSPTRG00000018025) #18	PSMB9 (ENSPTRG00000018024) #19	TAP1 (ENSPTRG00000018023) #20	PSMB8 (ENSPTRG00000018022) #21	TAP2 (ENSPTRG00000018021) #22	PATR-DOB (ENSPTRG00000018020) #23	HLA-DQB2 (ENSPTRG00000023404) #24	HLA-DQA2 (ENSPTRG00000034186) #25	HLA-DQB1 (ENSPTRG00000018018) ##24	HLA-DQA1 (ENSPTRG00000018017) ##25	PATR-DQB1 (ENSPTRG00000018001) #27	ENSPTRG00000051243 #26	PATR-DRB5 (ENSPTRG00000023735) ##26	PATR-DRA (ENSPTRG00000018016) #28	BTNL2 (ENSPTRG00000043663) #29	ENSPTRG00000044399	TSBP1 (ENSPTRG00000018014) #30	NOTCH4 (ENSPTRG00000034379) #31	GPSM3 (ENSPTRG00000023968) #32	PBX2 (ENSPTRG00000018012) #33
Bonobo	MODERN SPECIES	19	HSD17B8 (ENSPPAG00000032286) #8	SLC39A7 (ENSPPAG00000028225) #9	RXRB (ENSPPAG00000038590) #10	COL11A2 (ENSPPAG00000013099) #11	HLA-DPB1 (ENSPPAG00000041449) #13	HLA-DPA1 (ENSPPAG00000031863) #12	HLA-DOA (ENSPPAG00000036361) #14	BRD2 (ENSPPAG00000016843) #15	ENSPPAG00000027710 #16	HLA-DMA (ENSPPAG00000041639) #17	HLA-DMB (ENSPPAG00000037856) #18	ENSPPAG00000033020	PSMB9 (ENSPPAG00000038623) #19	TAP1 (ENSPPAG00000029436) #20	PSMB8 (ENSPPAG00000042377) #21	TAP2 (ENSPPAG00000033938) #22	HLA-DOB (ENSPPAG00000027428) #23	HLA-DQB2 (ENSPPAG00000041341) #24	HLA-DQA2 (ENSPPAG00000038014) #25	HLA-DQB1 (ENSPPAG00000041275) ##24	ENSPPAG00000019881 ##25	ENSPPAG00000039594 ##26	ENSPPAG00000036652 #26	ENSPPAG00000029790 #26	HLA-DRA (ENSPPAG00000041818) #28	ENSPPAG00000038384 #29	ENSPPAG00000034948 #30	NOTCH4 (ENSPPAG00000030396) #31	GPSM3 (ENSPPAG00000035669) #32	PBX2 (ENSPPAG00000039908) #33	AGER (ENSPPAG00000028489) #34
Human	MODERN SPECIES	18	RING1 (ENSG00000204227) #7	HSD17B8 (ENSG00000204228) #8	SLC39A7 (ENSG00000112473) #9	RXRB (ENSG00000204231) #10	COL11A2 (ENSG00000204248) #11	HLA-DPB1 (ENSG00000223865) #13	HLA-DPA1 (ENSG00000231389) #12	HLA-DOA (ENSG00000204252) #14	BRD2 (ENSG00000204256) #15	HLA-DMA (ENSG00000204257) #17	ENSG00000248993	HLA-DMB (ENSG00000242574) #18	TAP1 (ENSG00000168394) #20	PSMB9 (ENSG00000240065) #19	PSMB8 (ENSG00000204264) #21	TAP2 (ENSG00000204267) #22	ENSG00000250264	HLA-DOB (ENSG00000241106) #23	HLA-DQB2 (ENSG00000232629) #24	HLA-DQA2 (ENSG00000237541) #25	HLA-DQB1 (ENSG00000179344) ##24	HLA-DQA1 (ENSG00000196735) ##25	HLA-DRB1 (ENSG00000196126) #27	HLA-DRB5 (ENSG00000198502) ##26	HLA-DRA (ENSG00000204287) #28	BTNL2 (ENSG00000204290) #29	TSBP1 (ENSG00000204296) #30	NOTCH4 (ENSG00000204301) #31	GPSM3 (ENSG00000213654) #32	PBX2 (ENSG00000204304) #33	AGER (ENSG00000204305) #34
Gibbon	MODERN SPECIES	10	HSD17B8 (ENSNLEG00000006824) #8	SLC39A7 (ENSNLEG00000006815) #9	RXRB (ENSNLEG00000006809) #10	ENSNLEG00000030023 #11	HLA-DPB1 (ENSNLEG00000006801) #13	HLA-DPA1 (ENSNLEG00000034417) #12	ENSNLEG00000031675 #14	BRD2 (ENSNLEG00000006782) #15	ENSNLEG00000032110 #16	HLA-DMA (ENSNLEG00000006775) #17	HLA-DMB (ENSNLEG00000006770) #18	ENSNLEG00000032895	PSMB9 (ENSNLEG00000006757) #19	TAP1 (ENSNLEG00000006738) #20	PSMB8 (ENSNLEG00000006733) #21	TAP2 (ENSNLEG00000006714) #22	HLA-DOB (ENSNLEG00000027543) #23	HLA-DQB2 (ENSNLEG00000006713) #24	HLA-DQA2 (ENSNLEG00000027015) #25	HLA-DQB1 (ENSNLEG00000006693) ##24	HLA-DQA1 (ENSNLEG00000032515) ##25	ENSNLEG00000032832 #26	HLA-DRA (ENSNLEG00000006686) #28	BTNL2 (ENSNLEG00000006679) #29	ENSNLEG00000006667 #30	ENSNLEG00000006638	GPSM3 (ENSNLEG00000033153) #32	PBX2 (ENSNLEG00000006632) #33	AGER (ENSNLEG00000006604) #34	RNF5 (ENSNLEG00000027395) #35	AGPAT1 (ENSNLEG00000006594) #36
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.m.a ##24	ENSGT00940000162892.a.a.b ##25	ENSGT00940000154723.b.m.b ##24	ENSGT00940000162892.a.a.a ##25	ENSGT00940000154993.m.a.b ##26	ENSGT00940000154993.m.b #26	ENSGT00940000154993.m.a.a #27	ENSGT00940000160997 #28	ENSGT00530000064839 #30	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.qc.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.m.a ##24	ENSGT00940000162892.a.a.b ##25	ENSGT00940000154993.m.a.a.a #27	ENSGT00940000154723.b.m.b ##24	ENSGT00940000162892.a.a.a ##25	ENSGT00940000154993.m.a.b ##26	ENSGT00940000154993.m.a.a.b.a.b #27	ENSGT00940000154993.m.b #26	ENSGT00940000154993.m.a.a.b.b #27	ENSGT00940000160997 #28	ENSGT00530000064839 #30	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.qc.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.m.a ##24	ENSGT00940000162892.a.a.b ##25	ENSGT00940000154993.m.a.a.a #27	ENSGT00940000154723.b.m.b ##24	ENSGT00940000162892.a.a.a ##25	ENSGT00940000154993.m.a.b ##26	ENSGT00940000154993.m.b.a.b #26	ENSGT00940000154993.m.a.a.b.b #27	ENSGT00940000160997 #28	ENSGT00530000064839 #30	ENSGT00950000183123.h.b	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33
Macaca	ANCESTRAL SPECIES	9	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498.k #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.qc.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.m.a ##24	ENSGT00940000162892.a.a.b ##25	ENSGT00940000154993.m.a.a.a #27	ENSGT00940000154993.m.b.a.b #26	ENSGT00940000154993.m.a.a.b.b #27	ENSGT00940000160997 #28	ENSGT00530000064839 #30	ENSGT00950000183123.h.b	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00390000012691.c.b.m.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160076 #9	ENSGT00940000160668 #8	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498.k #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.qc.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154993.m.a.b ##26	ENSGT00940000160997 #28	ENSGT00530000064839 #30	ENSGT00950000183123.h.b	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36	ENSGT00940000162975 #37	ENSGT00940000155779.a.b	ENSGT00940000162382	ENSGT00920000149187
Crab-eating macaque	MODERN SPECIES	14	WDR46 (ENSMFAG00000000475)	B3GALT4 (ENSMFAG00000041942)	RPS18 (ENSMFAG00000032199)	COL11A2 (ENSMFAG00000017491) #11	RING1 (ENSMFAG00000002610) #7	SLC39A7 (ENSMFAG00000038848) #9	HSD17B8 (ENSMFAG00000037332) #8	RXRB (ENSMFAG00000003583) #10	HLA-DOA (ENSMFAG00000058905) #14	BRD2 (ENSMFAG00000037520) #15	ENSMFAG00000060572 #16	HLA-DMA (ENSMFAG00000042109) #17	HLA-DMB (ENSMFAG00000004018) #18	PSMB9 (ENSMFAG00000038128) #19	TAP1 (ENSMFAG00000041369) #20	TAP2 (ENSMFAG00000037139) #22	HLA-DOB (ENSMFAG00000003652) #23	HLA-DQA1 (ENSMFAG00000002949) ##25	ENSMFAG00000054107	HLA-DRB5 (ENSMFAG00000000676) ##26	ENSMFAG00000058962 ##26	HLA-DRA (ENSMFAG00000032157) #28	ENSMFAG00000033140 #30	ENSMFAG00000049929	ENSMFAG00000033054 #31	RNF5 (ENSMFAG00000033282) #35	ENSMFAG00000059430	GPSM3 (ENSMFAG00000044173) #32	PBX2 (ENSMFAG00000045367) #33	AGER (ENSMFAG00000038314) #34	AGPAT1 (ENSMFAG00000042426) #36
Rhesus	MODERN SPECIES	14	VPS52 (ENSMMUG00000003864)	ENSMMUG00000003867	RING1 (ENSMMUG00000003863) #7	SLC39A7 (ENSMMUG00000003859) #9	HSD17B8 (ENSMMUG00000003861) #8	RXRB (ENSMMUG00000003858) #10	COL11A2 (ENSMMUG00000003850) #11	ENSMMUG00000019371 #12	ENSMMUG00000041095	MAMU-DOA (ENSMMUG00000015734) #14	BRD2 (ENSMMUG00000023138) #15	MAMU-DMB (ENSMMUG00000022626) #18	ENSMMUG00000063291	PSMB9 (ENSMMUG00000011304) #19	PSMB8 (ENSMMUG00000011301) #20	MAMU-DOB (ENSMMUG00000011293) #22	ENSMMUG00000054826	MAMU-DRB1 (ENSMMUG00000029799) ##26	MAMU-DRA (ENSMMUG00000039082) #28	TSBP1 (ENSMMUG00000018425) #30	ENSMMUG00000029402	NOTCH4 (ENSMMUG00000018461) #31	GPSM3 (ENSMMUG00000018459) #32	PBX2 (ENSMMUG00000018456) #33	AGER (ENSMMUG00000018442) #34	RNF5 (ENSMMUG00000018438) #35	AGPAT1 (ENSMMUG00000018434) #36	EGFL8 (ENSMMUG00000018432)	PRRT1 (ENSMMUG00000016647)	FKBPL (ENSMMUG00000015230)	ATF6B (ENSMMUG00000015229)
Pig-tailed macaque	MODERN SPECIES	528	RXRB (ENSMNEG00000034252) #10	COL11A2 (ENSMNEG00000022236) #11	ENSMNEG00000010287 #13	HLA-DPB1 (ENSMNEG00000029725) #13	HLA-DPA1 (ENSMNEG00000040889) #12	HLA-DOA (ENSMNEG00000008508) #14	BRD2 (ENSMNEG00000030743) #15	ENSMNEG00000039758 #16	HLA-DMA (ENSMNEG00000032904) #17	HLA-DMB (ENSMNEG00000044507) #18	ENSMNEG00000035658	ENSMNEG00000036723	PSMB9 (ENSMNEG00000038721) #19	TAP1 (ENSMNEG00000041518) #20	PSMB8 (ENSMNEG00000044942) #21	TAP2 (ENSMNEG00000041413) #22	HLA-DOB (ENSMNEG00000043598) #23	HLA-DQB1 (ENSMNEG00000027969) ##24	HLA-DQA1 (ENSMNEG00000038603) ##25	ENSMNEG00000044119 #27	ENSMNEG00000018617	ENSMNEG00000020869 ##26
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498.m #12	ENSGT00940000162498.n #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.qc.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353.h #23	ENSGT00940000154723.b.m.a ##24	ENSGT00940000162892.a.a.b ##25	ENSGT00940000155046.t	ENSGT00390000015391	ENSGT00940000153251.b.a	ENSGT00530000064866	ENSGT00390000013322	ENSGT00730000111474	ENSGT00390000010291	ENSGT00960000186815	ENSGT00940000164570	ENSGT00940000164618	ENSGT00390000016847	ENSGT00390000011767
Olive baboon	MODERN SPECIES	16	RING1 (ENSPANG00000023635) #7	HSD17B8 (ENSPANG00000023634) #8	SLC39A7 (ENSPANG00000023633) #9	RXRB (ENSPANG00000018527) #10	COL11A2 (ENSPANG00000009194) #11	HLA-DPB1 (ENSPANG00000005764) #13	HLA-DPA1 (ENSPANG00000018967) #12	HLA-DOA (ENSPANG00000031879) #14	BRD2 (ENSPANG00000019626) #15	ENSPANG00000035618 #16	HLA-DMA (ENSPANG00000026492) #17	HLA-DMB (ENSPANG00000019593) #18	PSMB9 (ENSPANG00000033974) #19	TAP1 (ENSPANG00000024178) #20	PSMB8 (ENSPANG00000016588) #21	TAP2 (ENSPANG00000015103) #22	HLA-DOB (ENSPANG00000016388) #23	ENSPANG00000044498	ENSPANG00000007627	TCF19 (ENSPANG00000024035)	CCHCR1 (ENSPANG00000017010)	ENSPANG00000049186	PSORS1C2 (ENSPANG00000024487)	CDSN (ENSPANG00000047914)	C6orf15 (ENSPANG00000011097)	ENSPANG00000031147	ENSPANG00000009406	SFTA2 (ENSPANG00000030986)	VARS2 (ENSPANG00000018481)	GTF2H4 (ENSPANG00000026494)	DDR1 (ENSPANG00000024488)
Cercopithecinae_d	ANCESTRAL SPECIES	197					ENSGT00940000162390 #13	ENSGT00940000162498.n #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.qc.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353.h #23	ENSGT00940000154723.b.m.a ##24	ENSGT00940000162892.a.a.b ##25
Drill	MODERN SPECIES	1605						ENSMLEG00000035946 #12	HLA-DOA (ENSMLEG00000037836) #14	ENSMLEG00000042296 #15	ENSMLEG00000035779 #16	HLA-DMA (ENSMLEG00000039758) #17	HLA-DMB (ENSMLEG00000032921) #18	ENSMLEG00000033307	PSMB9 (ENSMLEG00000009919) #19	TAP1 (ENSMLEG00000042023) #20	PSMB8 (ENSMLEG00000028732) #21	TAP2 (ENSMLEG00000040111) #22	HLA-DOB (ENSMLEG00000044332) #23
Sooty mangabey	MODERN SPECIES	451					HLA-DPB1 (ENSCATG00000038170) #13	ENSCATG00000024393 #12	HLA-DOA (ENSCATG00000035917) #14	ENSCATG00000034965 #15	ENSCATG00000037729 #16	HLA-DMA (ENSCATG00000030669) #17	HLA-DMB (ENSCATG00000024024) #18	ENSCATG00000037243	PSMB9 (ENSCATG00000041856) #19	TAP1 (ENSCATG00000033980) #20	PSMB8 (ENSCATG00000024878) #21	TAP2 (ENSCATG00000038838) #22	ENSCATG00000036138 #23	HLA-DQB1 (ENSCATG00000030073) ##24	HLA-DQA1 (ENSCATG00000012156) ##25
Rhinopithecus	ANCESTRAL SPECIES	177							ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.nc #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000154723.b.m.b ##24	ENSGT00940000162892.a.a.a ##25	ENSGT00940000154993.m.a.b ##26	ENSGT00940000154993.m.b #26	ENSGT00940000154993.m.a.a #27	ENSGT00940000160997 #28	ENSGT00530000064839 #30	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36
Golden snub-nosed monkey	MODERN SPECIES	1416							HLA-DOA (ENSRROG00000000054) #14	ENSRROG00000012557 #15	ENSRROG00000034857 #16	HLA-DMA (ENSRROG00000037828) #17	HLA-DMB (ENSRROG00000039771) #18	ENSRROG00000012955	PSMB9 (ENSRROG00000005028) #19	TAP1 (ENSRROG00000021353) #20	PSMB8 (ENSRROG00000019326) #21	TAP2 (ENSRROG00000033497) #22
Black snub-nosed monkey	MODERN SPECIES	1396							HLA-DOA (ENSRBIG00000041291) #14	ENSRBIG00000044329 #15	ENSRBIG00000033102 #16	HLA-DMA (ENSRBIG00000027897) #17	HLA-DMB (ENSRBIG00000031730) #18	ENSRBIG00000031206	PSMB9 (ENSRBIG00000042419) #19	TAP1 (ENSRBIG00000038729) #20	PSMB8 (ENSRBIG00000032621) #21	TAP2 (ENSRBIG00000042752) #22	HLA-DOB (ENSRBIG00000039119) #23	ENSRBIG00000031872 ##24	HLA-DQA1 (ENSRBIG00000031838) ##25
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.lc #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.l.b #24	ENSGT00940000162892.a.a.d ##25	ENSGT00940000154723.b.l.a.b #24	ENSGT00940000162892.a.a.c ##25	ENSGT00940000154993.n ##26	ENSGT00940000154723.b.k #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.l.a.a #24	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00530000064839 #30	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33
Cebidae	ANCESTRAL SPECIES	5	ENSGT00940000161022.b #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.lc #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.l.b #24	ENSGT00940000162892.a.a.d ##25	ENSGT00940000154723.b.l.a.b #24	ENSGT00940000162892.a.a.c ##25	ENSGT00940000154993.n.a ##26
Cebidae_a	ANCESTRAL SPECIES	25	ENSGT00940000161022.b #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.lc #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.l.b #24	ENSGT00940000162892.a.a.d ##25	ENSGT00940000154723.b.l.a.b #24	ENSGT00940000162892.a.a.c ##25	ENSGT00940000154993.n.a.b ##26
Bolivian squirrel monkey	MODERN SPECIES	59	LRRC1 (ENSSBOG00000035746)	KLHL31 (ENSSBOG00000033630)	GCLC (ENSSBOG00000023419)	ELOVL5 (ENSSBOG00000034870)	ENSSBOG00000021942	GCM1 (ENSSBOG00000005634)	FBXO9 (ENSSBOG00000019141)	CILK1 (ENSSBOG00000017283)	GSTA4 (ENSSBOG00000020856)	ENSSBOG00000025505	GSTA5 (ENSSBOG00000023195)	TMEM14A (ENSSBOG00000022452)	PSMB9 (ENSSBOG00000022067) #19	TAP1 (ENSSBOG00000027226) #20	PSMB8 (ENSSBOG00000026986) #21	TAP2 (ENSSBOG00000021205) #22	HLA-DOB (ENSSBOG00000029243) #23	ENSSBOG00000012276 #24	ENSSBOG00000035334 ##25	ENSSBOG00000016392 #24	ENSSBOG00000021233 ##25	ENSSBOG00000031743 ##26	ENSSBOG00000032160 ##26
Capuchin	MODERN SPECIES	24	VPS52 (ENSCCAG00000029806)	RING1 (ENSCCAG00000020672) #7	HSD17B8 (ENSCCAG00000034063) #8	SLC39A7 (ENSCCAG00000021481) #9	RXRB (ENSCCAG00000015878) #10	COL11A2 (ENSCCAG00000021086) #11	HLA-DPB1 (ENSCCAG00000036491) #13	HLA-DPA1 (ENSCCAG00000035048) #12	HLA-DOA (ENSCCAG00000024211) #14	ENSCCAG00000016930 #15	HLA-DMA (ENSCCAG00000031122) #17	HLA-DMB (ENSCCAG00000030904) #18	PSMB9 (ENSCCAG00000036808) #19	TAP1 (ENSCCAG00000024218) #20	PSMB8 (ENSCCAG00000026335) #21	TAP2 (ENSCCAG00000035497) #22	HLA-DOB (ENSCCAG00000034021) #23	ENSCCAG00000028168 #24	ENSCCAG00000023824 ##25	ENSCCAG00000025088 #24	HLA-DQA2 (ENSCCAG00000023549) #25	HLA-DRB1 (ENSCCAG00000025004) #27	ENSCCAG00000024284 ##26	ENSCCAG00000033580 ##26	HLA-DRA (ENSCCAG00000027271) #28	BTNL2 (ENSCCAG00000037406) #29	TSBP1 (ENSCCAG00000034222) #30	ENSCCAG00000029507	GPSM3 (ENSCCAG00000026910) #32	NOTCH4 (ENSCCAG00000025076) #31	PBX2 (ENSCCAG00000034408) #33
Marmoset	MODERN SPECIES	16	B3GALT4 (ENSCJAG00000043225)	ENSCJAG00000021650	VPS52 (ENSCJAG00000021644)	RING1 (ENSCJAG00000081691) #7	ENSCJAG00000021632 #8	SLC39A7 (ENSCJAG00000021622) #9	RXRB (ENSCJAG00000021619) #10	COL11A2 (ENSCJAG00000021577) #11	HLA-DPB1 (ENSCJAG00000021575) #13	HLA-DPA1 (ENSCJAG00000057301) #12	HLA-DOA (ENSCJAG00000021571) #14	ENSCJAG00000021566 #15	HLA-DMA (ENSCJAG00000021558) #17	PSMB9 (ENSCJAG00000021553) #19	TAP1 (ENSCJAG00000021552) #20	TAP2 (ENSCJAG00000021550) #22	HLA-DOB (ENSCJAG00000035217) #23	ENSCJAG00000045515 ##25	ENSCJAG00000021548 #24	ENSCJAG00000072040	ENSCJAG00000043141	ENSCJAG00000073641	ENSCJAG00000082318	ENSCJAG00000046350	ENSCJAG00000044447	ENSCJAG00000042232	ENSCJAG00000072632	ENSCJAG00000047812	ENSCJAG00000083244	ENSCJAG00000010588	ENSCJAG00000082116
Mas night monkey	MODERN SPECIES	1006				HLA-DPA1 (ENSANAG00000025586) #12	ENSANAG00000021916	ENSANAG00000020251	HLA-DOA (ENSANAG00000023738) #14	BRD2 (ENSANAG00000025054) #15	ENSANAG00000022510 #16	HLA-DMA (ENSANAG00000024515) #17	HLA-DMB (ENSANAG00000031322) #18	ENSANAG00000029686	PSMB9 (ENSANAG00000018195) #19	TAP1 (ENSANAG00000025374) #20	PSMB8 (ENSANAG00000023214) #21	TAP2 (ENSANAG00000023266) #22	HLA-DQB2 (ENSANAG00000025105) #24	HLA-DQA2 (ENSANAG00000023973) #25	ENSANAG00000023444 #24	ENSANAG00000025439 ##25
Tarsier	MODERN SPECIES	6430											HLA-DMA (ENSTSYG00000013575) #17	HLA-DMB (ENSTSYG00000013568) #18	PSMB9 (ENSTSYG00000007747) #19	TAP1 (ENSTSYG00000007737) #20	PSMB8 (ENSTSYG00000007730) #21	TAP2 (ENSTSYG00000029149) #22	HLA-DOB (ENSTSYG00000007697) #23
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993 #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36	ENSGT00940000162975 #37
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000161821	ENSGT00940000154993 #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36	ENSGT00940000162975 #37
Mouse lemur	MODERN SPECIES	28	PFDN6 (ENSMICG00000000922)	RGL2 (ENSMICG00000000926)	TAPBP (ENSMICG00000042293)	DAXX (ENSMICG00000000933)	ENSMICG00000033163	KIFC1 (ENSMICG00000005648)	PHF1 (ENSMICG00000005660)	CUTA (ENSMICG00000005673)	SYNGAP1 (ENSMICG00000005678)	SFTA2 (ENSMICG00000030909)	ENSMICG00000035395	ENSMICG00000031166	PSMB9 (ENSMICG00000015307) #19	TAP1 (ENSMICG00000015264) #20	PSMB8 (ENSMICG00000015254) #21	TAP2 (ENSMICG00000015245) #22	HLA-DOB (ENSMICG00000034483) #23	ENSMICG00000031829 #24	ENSMICG00000044751	ENSMICG00000003714 #24	ENSMICG00000028538	ENSMICG00000036984 #26	ENSMICG00000035687	HLA-DRA (ENSMICG00000006228) #28	ENSMICG00000037923	TREML2 (ENSMICG00000027522)	ENSMICG00000041702	TREM2 (ENSMICG00000009719)	TREML1 (ENSMICG00000035283)	NFYA (ENSMICG00000009686)	ENSMICG00000038280
Lemuriformes_a	ANCESTRAL SPECIES	76						ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000154993 #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36	ENSGT00940000162975 #37	ENSGT00940000155779.a.b
Coquerels sifaka	MODERN SPECIES	872						HLA-DPA1 (ENSPCOG00000015236) #12	HLA-DOA (ENSPCOG00000014372) #14	ENSPCOG00000018880	ENSPCOG00000018456 #15	ENSPCOG00000016191 #16	HLA-DMA (ENSPCOG00000022072) #17	HLA-DMB (ENSPCOG00000018934) #18	PSMB9 (ENSPCOG00000017686) #19	TAP1 (ENSPCOG00000019389) #20	PSMB8 (ENSPCOG00000028091) #21	TAP2 (ENSPCOG00000014799) #22	HLA-DOB (ENSPCOG00000022286) #23	HLA-DQB1 (ENSPCOG00000014494) #24
Greater bamboo lemur	MODERN SPECIES	650					ENSPSMG00000009792 #12	HLA-DPB1 (ENSPSMG00000009639) #13	HLA-DPA1 (ENSPSMG00000009402) #12	HLA-DOA (ENSPSMG00000009261) #14	ENSPSMG00000009252	BRD2 (ENSPSMG00000009223) #15	HLA-DMA (ENSPSMG00000009171) #17	HLA-DMB (ENSPSMG00000009134) #18	PSMB9 (ENSPSMG00000009117) #19	TAP1 (ENSPSMG00000009102) #20	PSMB8 (ENSPSMG00000009083) #21	TAP2 (ENSPSMG00000008940) #22	HLA-DOB (ENSPSMG00000008851) #23	HLA-DQB1 (ENSPSMG00000008743) #24	ENSPSMG00000008349 #25	ENSPSMG00000007912	HLA-DRA (ENSPSMG00000007272) #28	ENSPSMG00000007226 #29	ENSPSMG00000007220
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	146	B3GALT4 (ENSOGAG00000006228)	RPS18 (ENSOGAG00000006225)	VPS52 (ENSOGAG00000006222)	RING1 (ENSOGAG00000006220) #7	HSD17B8 (ENSOGAG00000006214) #8	SLC39A7 (ENSOGAG00000030006) #9	RXRB (ENSOGAG00000011689) #10	COL11A2 (ENSOGAG00000025975) #11	ENSOGAG00000034269	ENSOGAG00000016138 #13	HLA-DPA1 (ENSOGAG00000006476) #12	HLA-DOA (ENSOGAG00000014685) #14	BRD2 (ENSOGAG00000006473) #15	HLA-DMA (ENSOGAG00000006029) #17	HLA-DMB (ENSOGAG00000032749) #18	ENSOGAG00000013823 #22	PSMB9 (ENSOGAG00000013846) #19	TAP1 (ENSOGAG00000013836) #20	PSMB8 (ENSOGAG00000013830) #21	ENSOGAG00000031343 #22	HLA-DQB1 (ENSOGAG00000005662) #24	ENSOGAG00000008401	ENSOGAG00000030012	ENSOGAG00000009732 #26	HLA-DRA (ENSOGAG00000008398) #28	BTNL2 (ENSOGAG00000008396) #29	ENSOGAG00000025050	ENSOGAG00000013069 #26	ENSOGAG00000025825	NOTCH4 (ENSOGAG00000010193) #31	GPSM3 (ENSOGAG00000032276) #32
Bushbaby	MODERN SPECIES	146	HSD17B8 (ENSOGAG00000006214) #8	SLC39A7 (ENSOGAG00000030006) #9	RXRB (ENSOGAG00000011689) #10	COL11A2 (ENSOGAG00000025975) #11	ENSOGAG00000034269	ENSOGAG00000016138 #13	HLA-DPA1 (ENSOGAG00000006476) #12	HLA-DOA (ENSOGAG00000014685) #14	BRD2 (ENSOGAG00000006473) #15	HLA-DMA (ENSOGAG00000006029) #17	HLA-DMB (ENSOGAG00000032749) #18	ENSOGAG00000013823 #22	PSMB9 (ENSOGAG00000013846) #19	TAP1 (ENSOGAG00000013836) #20	PSMB8 (ENSOGAG00000013830) #21	ENSOGAG00000031343 #22	HLA-DQB1 (ENSOGAG00000005662) #24	ENSOGAG00000008401	ENSOGAG00000030012	ENSOGAG00000009732 #26	HLA-DRA (ENSOGAG00000008398) #28	BTNL2 (ENSOGAG00000008396) #29	ENSOGAG00000025050	ENSOGAG00000013069 #26	ENSOGAG00000025825	NOTCH4 (ENSOGAG00000010193) #31	GPSM3 (ENSOGAG00000032276) #32	PBX2 (ENSOGAG00000016303) #33	AGER (ENSOGAG00000030141) #34	RNF5 (ENSOGAG00000031466) #35	AGPAT1 (ENSOGAG00000010187) #36
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000154993 #26	ENSGT00940000155371	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34
Tree shrew	MODERN SPECIES	5171															PSMB8 (ENSTBEG00000007794) #21	ENSTBEG00000007418 #22	ENSTBEG00000007262 #23
Glires	ANCESTRAL SPECIES	5	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000154993 #26	ENSGT00940000155371	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34
Rodentia	ANCESTRAL SPECIES	6	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #26	ENSGT00940000155371	ENSGT00940000154993.k.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #26	ENSGT00940000155371	ENSGT00940000154993.k.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000162892 #25	ENSGT00940000154993.k.a #26	ENSGT00940000155371	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00940000162450	ENSGT00980000198621	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35
Hystricomorpha_a	ANCESTRAL SPECIES	42	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #26	ENSGT00940000155371	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00940000162450	ENSGT00980000198621	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000155371	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00940000162450	ENSGT00980000198621	ENSGT00940000154993.k.a #26	ENSGT00940000154993.k.b #26	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35
Long-tailed chinchilla	MODERN SPECIES	144	VPS52 (ENSCLAG00000008115)	RING1 (ENSCLAG00000009149) #7	HSD17B8 (ENSCLAG00000007885) #8	SLC39A7 (ENSCLAG00000014475) #9	RXRB (ENSCLAG00000013699) #10	COL11A2 (ENSCLAG00000007783) #11	HLA-DPA1 (ENSCLAG00000010668) #12	HLA-DPB1 (ENSCLAG00000013126) #13	HLA-DOA (ENSCLAG00000011531) #14	BRD2 (ENSCLAG00000009750) #15	HLA-DMA (ENSCLAG00000014679) #17	HLA-DMB (ENSCLAG00000008468) #18	PSMB9 (ENSCLAG00000007918) #19	TAP1 (ENSCLAG00000008052) #20	PSMB8 (ENSCLAG00000006990) #21	TAP2 (ENSCLAG00000012654) #22	HLA-DOB (ENSCLAG00000011735) #23	HLA-DQB2 (ENSCLAG00000011869) #24	ENSCLAG00000009507	ENSCLAG00000016042	ENSCLAG00000013098	HLA-DRA (ENSCLAG00000009768) #28	BTNL2 (ENSCLAG00000007142) #29	ENSCLAG00000015677	ENSCLAG00000011744	ENSCLAG00000009141	GPSM3 (ENSCLAG00000007406) #32	PBX2 (ENSCLAG00000007051) #33	AGER (ENSCLAG00000013330) #34	RNF5 (ENSCLAG00000009576) #35	ENSCLAG00000008617 #36
Degu	MODERN SPECIES	46	WDR46 (ENSODEG00000017342)	B3GALT4 (ENSODEG00000017281)	ENSODEG00000017344	VPS52 (ENSODEG00000017744)	RING1 (ENSODEG00000017691) #7	HSD17B8 (ENSODEG00000017486) #8	SLC39A7 (ENSODEG00000017361) #9	RXRB (ENSODEG00000017146) #10	COL11A2 (ENSODEG00000017513) #11	HLA-DPA1 (ENSODEG00000017716) #12	HLA-DOA (ENSODEG00000017569) #14	BRD2 (ENSODEG00000017239) #15	ENSODEG00000017381 #17	HLA-DMB (ENSODEG00000017802) #18	PSMB8 (ENSODEG00000017662) #21	TAP2 (ENSODEG00000017797) #22	PSMB9 (ENSODEG00000017656) #19	TAP1 (ENSODEG00000017484) #20	HLA-DOB (ENSODEG00000017495) #23	ENSODEG00000017249 #24	ENSODEG00000017510	ENSODEG00000017402 #26	ENSODEG00000017435 #26	ENSODEG00000017398	ENSODEG00000017414 #29	ENSODEG00000017401	ENSODEG00000017653	ENSODEG00000017483 #32	PBX2 (ENSODEG00000017449) #33	ENSODEG00000017466 #34	ENSODEG00000017614 #35
Guinea pig	MODERN SPECIES	15	HSD17B8 (ENSCPOG00000013940) #8	SLC39A7 (ENSCPOG00000023790) #9	RXRB (ENSCPOG00000013936) #10	COL11A2 (ENSCPOG00000020466) #11	ENSCPOG00000035477 #12	ENSCPOG00000024142 #13	ENSCPOG00000032859 #13	ENSCPOG00000002427 #12	HLA-DOA (ENSCPOG00000012562) #14	BRD2 (ENSCPOG00000002811) #15	HLA-DMA (ENSCPOG00000015044) #17	HLA-DMB (ENSCPOG00000002810) #18	PSMB9 (ENSCPOG00000002121) #19	TAP1 (ENSCPOG00000026988) #20	PSMB8 (ENSCPOG00000000729) #21	TAP2 (ENSCPOG00000038951) #22	HLA-DOB (ENSCPOG00000033895) #23	HLA-DQB2 (ENSCPOG00000038606) #24	ENSCPOG00000014463 #25	ENSCPOG00000040083 #26	ENSCPOG00000003574 #26	ENSCPOG00000036465	HLA-DRA (ENSCPOG00000012309) #28	BTNL2 (ENSCPOG00000004277) #29	ENSCPOG00000023019	ENSCPOG00000000591	PBX2 (ENSCPOG00000037281) #33	AGER (ENSCPOG00000000590) #34	RNF5 (ENSCPOG00000030132) #35	AGPAT1 (ENSCPOG00000037644) #36	EGFL8 (ENSCPOG00000040046) #37
Naked mole-rat female	MODERN SPECIES	4	VPS52 (ENSHGLG00000017226)	RING1 (ENSHGLG00000019474) #7	HSD17B8 (ENSHGLG00000019497) #8	SLC39A7 (ENSHGLG00000018434) #9	RXRB (ENSHGLG00000018456) #10	COL11A2 (ENSHGLG00000018531) #11	HLA-DPB1 (ENSHGLG00000019389) #13	HLA-DPA1 (ENSHGLG00000019266) #12	HLA-DOA (ENSHGLG00000019255) #14	BRD2 (ENSHGLG00000019334) #15	HLA-DMA (ENSHGLG00000017048) #17	HLA-DMB (ENSHGLG00000017060) #18	PSMB9 (ENSHGLG00000036914) #19	TAP1 (ENSHGLG00000017081) #20	PSMB8 (ENSHGLG00000017087) #21	TAP2 (ENSHGLG00000019356) #22	HLA-DOB (ENSHGLG00000016652) #23	HLA-DQB2 (ENSHGLG00000038840) #24	ENSHGLG00000043086	ENSHGLG00000011398 #25	ENSHGLG00000011613 #26	ENSHGLG00000011873 #26	ENSHGLG00000012074 #26	HLA-DRA (ENSHGLG00000012243) #28	GPSM3 (ENSHGLG00000012807) #32	ENSHGLG00000013320 #33	AGER (ENSHGLG00000013559) #34	ENSHGLG00000048713 #35	AGPAT1 (ENSHGLG00000013956) #36	EGFL8 (ENSHGLG00000014379) #37	PPT2 (ENSHGLG00000016656)
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #26	ENSGT00940000155371	ENSGT00940000154993.k.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34
Marmotini	ANCESTRAL SPECIES	18	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353.i #23	ENSGT00940000161821.l.a	ENSGT00940000154723.b #24	ENSGT00940000161821.k	ENSGT00940000154993.k.a #26	ENSGT00940000154993.k.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00940000162450.b.a	ENSGT00940000163287 #31	ENSGT00980000198621	ENSGT00390000002471 #32	ENSGT00940000160293 #33
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353.i #23
Arctic ground squirrel	MODERN SPECIES	1178													PSMB9 (ENSUPAG00010005439) #19	TAP1 (ENSUPAG00010004755) #20	PSMB8 (ENSUPAG00010004745) #21	TAP2 (ENSUPAG00010004733) #22	ENSUPAG00010004730 #23
Squirrel	MODERN SPECIES	76	VPS52 (ENSSTOG00000002397)	RING1 (ENSSTOG00000026166) #7	HSD17B8 (ENSSTOG00000020853) #8	SLC39A7 (ENSSTOG00000014304) #9	RXRB (ENSSTOG00000027099) #10	COL11A2 (ENSSTOG00000003578) #11	HLA-DPB1 (ENSSTOG00000003567) #13	HLA-DPA1 (ENSSTOG00000003558) #12	HLA-DOA (ENSSTOG00000010820) #14	BRD2 (ENSSTOG00000010807) #15	HLA-DMA (ENSSTOG00000009246) #17	HLA-DMB (ENSSTOG00000019821) #18	PSMB9 (ENSSTOG00000003475) #19	TAP1 (ENSSTOG00000003451) #20	PSMB8 (ENSSTOG00000019724) #21	TAP2 (ENSSTOG00000003413) #22	ENSSTOG00000030715	HLA-DOB (ENSSTOG00000003405) #23	ENSSTOG00000028098
Alpin marmot	MODERN SPECIES	20	VPS52 (ENSMMMG00000024234)	RING1 (ENSMMMG00000024233) #7	HSD17B8 (ENSMMMG00000024232) #8	SLC39A7 (ENSMMMG00000024231) #9	RXRB (ENSMMMG00000024230) #10	COL11A2 (ENSMMMG00000024229) #11	HLA-DPB1 (ENSMMMG00000024228) #13	HLA-DPA1 (ENSMMMG00000024227) #12	HLA-DOA (ENSMMMG00000024226) #14	BRD2 (ENSMMMG00000024225) #15	HLA-DMA (ENSMMMG00000024224) #17	HLA-DMB (ENSMMMG00000024223) #18	PSMB9 (ENSMMMG00000024222) #19	TAP1 (ENSMMMG00000024221) #20	PSMB8 (ENSMMMG00000024220) #21	TAP2 (ENSMMMG00000024218) #22	HLA-DOB (ENSMMMG00000024217) #23	ENSMMMG00000024215	ENSMMMG00000024056 #24	ENSMMMG00000020395	ENSMMMG00000018808 #24	ENSMMMG00000018797	ENSMMMG00000018785	ENSMMMG00000018780 #26	ENSMMMG00000018777 #26	HLA-DRA (ENSMMMG00000018744) #28	BTNL2 (ENSMMMG00000018734) #29	ENSMMMG00000018723	ENSMMMG00000018720	ENSMMMG00000018661	ENSMMMG00000018655
Eurasian red squirrel	MODERN SPECIES	16	ENSSVLG00005004778	RING1 (ENSSVLG00005004804) #7	HSD17B8 (ENSSVLG00005004902) #8	SLC39A7 (ENSSVLG00005004925) #9	RXRB (ENSSVLG00005004952) #10	COL11A2 (ENSSVLG00005005202) #11	HLA-DPB1 (ENSSVLG00005006269) #13	HLA-DPA1 (ENSSVLG00005006304) #12	HLA-DOA (ENSSVLG00005006335) #14	BRD2 (ENSSVLG00005006374) #15	HLA-DMA (ENSSVLG00005006465) #17	HLA-DMB (ENSSVLG00005006515) #18	PSMB9 (ENSSVLG00005006563) #19	TAP1 (ENSSVLG00005006618) #20	PSMB8 (ENSSVLG00005006647) #21	TAP2 (ENSSVLG00005006696) #22	HLA-DOB (ENSSVLG00005006746) #23	ENSSVLG00005006864 #24	ENSSVLG00005007173	HLA-DQB2 (ENSSVLG00005007368) #24	ENSSVLG00005007455	ENSSVLG00005007482 #26	ENSSVLG00005007511	ENSSVLG00005007546 #26	HLA-DRA (ENSSVLG00005007588) #28	BTNL2 (ENSSVLG00005007627) #29	ENSSVLG00005007707	ENSSVLG00005007731	ENSSVLG00005007751	ENSSVLG00005008664	NOTCH4 (ENSSVLG00005008720) #31
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #26	ENSGT00940000154993.l #26	ENSGT00940000155371	ENSGT00940000154993.k.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #26	ENSGT00940000155371	ENSGT00940000154993.k.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33
Muroidea	ANCESTRAL SPECIES	15	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #26	ENSGT00940000155371	ENSGT00940000154993.k.b.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #26	ENSGT00940000155371	ENSGT00940000154993.k.b.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00980000198621	ENSGT00940000163287 #31	ENSGT00390000002471 #32
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #26	ENSGT00940000155371	ENSGT00940000154993.k.b.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00940000162450	ENSGT00980000198621	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35
Cricetinae	ANCESTRAL SPECIES	43		ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.b.b #26	ENSGT00940000154993.k.a #26	ENSGT00940000155371	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00940000162450	ENSGT00980000198621	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35
Golden Hamster	MODERN SPECIES	856					Ring1 (ENSMAUG00000012254) #7	Hsd17b8 (ENSMAUG00000013407) #8	Slc39a7 (ENSMAUG00000015255) #9	Rxrb (ENSMAUG00000009043) #10	Col11a2 (ENSMAUG00000021348) #11	Brd2 (ENSMAUG00000006799) #15	H2-DMa (ENSMAUG00000000861) #17	ENSMAUG00000008923 #18	Psmb9 (ENSMAUG00000007584) #19	Tap1 (ENSMAUG00000017718) #20	Psmb8 (ENSMAUG00000003396) #21	Tap2 (ENSMAUG00000015081) #22	H2-Ob (ENSMAUG00000007698) #23	H2-Ab1 (ENSMAUG00000020395) #24	H2-Aa (ENSMAUG00000003363)	H2-Eb2 (ENSMAUG00000018151) #26	Btnl2 (ENSMAUG00000003530) #29	Btnl1 (ENSMAUG00000016817)	ENSMAUG00000015609	ENSMAUG00000009410	Notch4 (ENSMAUG00000015895)	Gpsm3 (ENSMAUG00000013374) #32	Pbx2 (ENSMAUG00000003275) #33	Ager (ENSMAUG00000001006) #34	Rnf5 (ENSMAUG00000000684) #35	Agpat1 (ENSMAUG00000011278) #36	Egfl8 (ENSMAUG00000013647) #37
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00390000008815	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.l #26	ENSGT00940000155371	ENSGT00940000154993.k.b.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00940000162450	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36
Prairie vole	MODERN SPECIES	352	Vps52 (ENSMOCG00000004229)	ENSMOCG00000014473	Ring1 (ENSMOCG00000020973) #7	Hsd17b8 (ENSMOCG00000001695) #8	Slc39a7 (ENSMOCG00000019993) #9	Rxrb (ENSMOCG00000000374) #10	Col11a2 (ENSMOCG00000016852) #11	ENSMOCG00000010963 #12	H2-Oa (ENSMOCG00000020236) #14	Brd2 (ENSMOCG00000016368) #15	H2-DMa (ENSMOCG00000002744) #17	ENSMOCG00000022309 #18	Psmb9 (ENSMOCG00000005369) #19	Tap1 (ENSMOCG00000019762) #20	Psmb8 (ENSMOCG00000014719) #21	Tap2 (ENSMOCG00000022898) #22	H2-Ob (ENSMOCG00000008562) #23	H2-Ab1 (ENSMOCG00000008439) #24	ENSMOCG00000013355	ENSMOCG00000017941 #26	ENSMOCG00000019721	H2-Ea (ENSMOCG00000008786) #28	Btnl2 (ENSMOCG00000014437) #29	Btnl1 (ENSMOCG00000018715)	ENSMOCG00000011431	Rnf39 (ENSMOCG00000015333)	Ppp1r11 (ENSMOCG00000002207)	Polr1h (ENSMOCG00000008537)	Polr1has (ENSMOCG00000015745)	H2-M5 (ENSMOCG00000004410)	Mog (ENSMOCG00000019437)
Northern American deer mouse	MODERN SPECIES	13	ENSPEMG00000024622	Ring1 (ENSPEMG00000019238) #7	Hsd17b8 (ENSPEMG00000012925) #8	Slc39a7 (ENSPEMG00000003403) #9	Rxrb (ENSPEMG00000018454) #10	Col11a2 (ENSPEMG00000016918) #11	ENSPEMG00000026148 #13	ENSPEMG00000015442 #12	H2-Oa (ENSPEMG00000011158) #14	Brd2 (ENSPEMG00000018138) #15	H2-DMa (ENSPEMG00000013203) #17	ENSPEMG00000018040 #18	Psmb9 (ENSPEMG00000009609) #19	Tap1 (ENSPEMG00000012461) #20	Psmb8 (ENSPEMG00000012170) #21	Tap2 (ENSPEMG00000010503) #22	H2-Ob (ENSPEMG00000001796) #23	ENSPEMG00000012719 #24	ENSPEMG00000007095	ENSPEMG00000015401 #24	ENSPEMG00000012679	H2-Eb1 (ENSPEMG00000002889)	H2-Eb2 (ENSPEMG00000006456) #26	H2-Ea (ENSPEMG00000008261) #28	Btnl2 (ENSPEMG00000007431) #29	Btnl1 (ENSPEMG00000008094)	ENSPEMG00000028515 #26	ENSPEMG00000011748	ENSPEMG00000026840	ENSPEMG00000026496	Notch4 (ENSPEMG00000015181)
Murinae	ANCESTRAL SPECIES	18	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000155371	ENSGT00940000154993.k.b.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34
Mus	ANCESTRAL SPECIES	16	ENSGT00390000008815	ENSGT00980000198488.m.a.b.a.b.a.a.a.c	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000155371	ENSGT00940000154993.k.b.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450.f	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000008815	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381.h #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000155371	ENSGT00940000154993.k.b.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450.f	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b.c.a #35
Mus_B	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381.g #18	ENSGT00940000160381.h #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000155371	ENSGT00940000154993.k.b.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450.e	ENSGT00940000162450.f	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34
Mus_C	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381.g #18	ENSGT00940000160381.h #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000155371	ENSGT00940000154993.k.b.b #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450.e	ENSGT00940000162450.f	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34
Steppe mouse	MODERN SPECIES	2564	ENSMSIG00000012243	Ring1 (ENSMSIG00000012190) #7	ENSMSIG00000012153 #8	Slc39a7 (ENSMSIG00000012137) #9	Rxrb (ENSMSIG00000012091) #10	Col11a2 (ENSMSIG00000011347) #11	ENSMSIG00000011214 #12	H2-Oa (ENSMSIG00000011198) #14	Brd2 (ENSMSIG00000011118) #15	H2-DMa (ENSMSIG00000011088) #17	H2-DMb1 (ENSMSIG00000011055) #18	Psmb9 (ENSMSIG00000011042) #19	ENSMSIG00000011012 #20	Psmb8 (ENSMSIG00000010986) #21	ENSMSIG00000010972	Tap2 (ENSMSIG00000010919) #22	H2-Ob (ENSMSIG00000010868) #23	ENSMSIG00000010843 #24	H2-Aa (ENSMSIG00000010823)	ENSMSIG00000010807	H2-Eb2 (ENSMSIG00000010788) #26	H2-Ea (ENSMSIG00000010776) #28	Btnl2 (ENSMSIG00000010760) #29	Btnl1 (ENSMSIG00000010748)	ENSMSIG00000010738	Tsbp1 (ENSMSIG00000010478) #30	Btnl4 (ENSMSIG00000010440)	ENSMSIG00000010410
spretus	MODERN SPECIES	8	B3galt4 (MGP_SPRETEiJ_G0022339)	MGP_SPRETEiJ_G0022340	Ring1 (MGP_SPRETEiJ_G0022342) #7	Hsd17b8 (MGP_SPRETEiJ_G0022343) #8	Slc39a7 (MGP_SPRETEiJ_G0022344) #9	Rxrb (MGP_SPRETEiJ_G0022345) #10	Col11a2 (MGP_SPRETEiJ_G0022346) #11	H2-Oa (MGP_SPRETEiJ_G0022347) #14	Brd2 (MGP_SPRETEiJ_G0022348) #15	H2-DMa (MGP_SPRETEiJ_G0022349) #17	MGP_SPRETEiJ_G0022350 #18	H2-DMb2 (MGP_SPRETEiJ_G0022351) #18	Psmb9 (MGP_SPRETEiJ_G0022352) #19	Tap1 (MGP_SPRETEiJ_G0022353) #20	Psmb8 (MGP_SPRETEiJ_G0022354) #21	Tap2 (MGP_SPRETEiJ_G0022355) #22	MGP_SPRETEiJ_G0022356	H2-Ob (MGP_SPRETEiJ_G0022357) #23	H2-Ab1 (MGP_SPRETEiJ_G0022358) #24	H2-Aa (MGP_SPRETEiJ_G0022359)	MGP_SPRETEiJ_G0022360	H2-Eb2 (MGP_SPRETEiJ_G0022361) #26	Btnl2 (MGP_SPRETEiJ_G0022362) #29	Btnl1 (MGP_SPRETEiJ_G0022363)	Tsbp1 (MGP_SPRETEiJ_G0022364) #30	MGP_SPRETEiJ_G0022366	Notch4 (MGP_SPRETEiJ_G0022367)	Gpsm3 (MGP_SPRETEiJ_G0022368) #32	Pbx2 (MGP_SPRETEiJ_G0022369) #33	Ager (MGP_SPRETEiJ_G0022370) #34	Rnf5 (MGP_SPRETEiJ_G0022371) #35
Mouse	MODERN SPECIES	8	Vps52 (ENSMUSG00000024319)	H2-K1 (ENSMUSG00000061232)	Ring1 (ENSMUSG00000024325) #7	Hsd17b8 (ENSMUSG00000073422) #8	Slc39a7 (ENSMUSG00000024327) #9	Rxrb (ENSMUSG00000039656) #10	Col11a2 (ENSMUSG00000024330) #11	H2-Oa (ENSMUSG00000024334) #14	Brd2 (ENSMUSG00000024335) #15	H2-DMa (ENSMUSG00000037649) #17	H2-DMb2 (ENSMUSG00000037548) #18	H2-DMb1 (ENSMUSG00000079547) #18	Psmb9 (ENSMUSG00000096727) #19	Tap1 (ENSMUSG00000037321) #20	Psmb8 (ENSMUSG00000024338) #21	Tap2 (ENSMUSG00000024339) #22	H2-Ob (ENSMUSG00000041538) #23	H2-Ab1 (ENSMUSG00000073421) #24	H2-Aa (ENSMUSG00000036594)	H2-Eb1 (ENSMUSG00000060586)	H2-Eb2 (ENSMUSG00000067341) #26	H2-Ea (ENSMUSG00000036322) #28	Btnl2 (ENSMUSG00000024340) #29	Btnl1 (ENSMUSG00000062638)	Tsbp1 (ENSMUSG00000057246) #30	Btnl4 (ENSMUSG00000058435)	Btnl6 (ENSMUSG00000092618)	Notch4 (ENSMUSG00000015468)	Gpsm3 (ENSMUSG00000034786) #32	Pbx2 (ENSMUSG00000034673) #33	Ager (ENSMUSG00000015452) #34
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021434	MGP_CAROLIEiJ_G0021435	Ring1 (MGP_CAROLIEiJ_G0021436) #7	Hsd17b8 (MGP_CAROLIEiJ_G0021437) #8	Slc39a7 (MGP_CAROLIEiJ_G0021438) #9	Rxrb (MGP_CAROLIEiJ_G0021439) #10	Col11a2 (MGP_CAROLIEiJ_G0021440) #11	H2-Oa (MGP_CAROLIEiJ_G0021441) #14	Brd2 (MGP_CAROLIEiJ_G0021442) #15	H2-DMa (MGP_CAROLIEiJ_G0021443) #17	MGP_CAROLIEiJ_G0021444 #18	MGP_CAROLIEiJ_G0021445 #18	Psmb9 (MGP_CAROLIEiJ_G0021446) #19	Tap1 (MGP_CAROLIEiJ_G0021447) #20	Psmb8 (MGP_CAROLIEiJ_G0021448) #21	Tap2 (MGP_CAROLIEiJ_G0021449) #22	MGP_CAROLIEiJ_G0021450	H2-Ob (MGP_CAROLIEiJ_G0021451) #23	H2-Ab1 (MGP_CAROLIEiJ_G0021452) #24	H2-Aa (MGP_CAROLIEiJ_G0021453)	MGP_CAROLIEiJ_G0021454	H2-Eb2 (MGP_CAROLIEiJ_G0021455) #26	Btnl2 (MGP_CAROLIEiJ_G0021456) #29	Btnl1 (MGP_CAROLIEiJ_G0021457)	Tsbp1 (MGP_CAROLIEiJ_G0021458) #30	Btnl6 (MGP_CAROLIEiJ_G0021459)	MGP_CAROLIEiJ_G0021460	Notch4 (MGP_CAROLIEiJ_G0021461)	Gpsm3 (MGP_CAROLIEiJ_G0021462) #32	Pbx2 (MGP_CAROLIEiJ_G0021463) #33	Ager (MGP_CAROLIEiJ_G0021464) #34
Shrew mouse	MODERN SPECIES	9	Pfdn6 (MGP_PahariEiJ_G0020430)	Wdr46 (MGP_PahariEiJ_G0020431)	B3galt4 (MGP_PahariEiJ_G0020432)	MGP_PahariEiJ_G0020433	Ring1 (MGP_PahariEiJ_G0020434) #7	Hsd17b8 (MGP_PahariEiJ_G0020435) #8	Slc39a7 (MGP_PahariEiJ_G0020436) #9	Rxrb (MGP_PahariEiJ_G0020437) #10	Col11a2 (MGP_PahariEiJ_G0020438) #11	H2-Oa (MGP_PahariEiJ_G0020439) #14	Brd2 (MGP_PahariEiJ_G0020440) #15	H2-DMa (MGP_PahariEiJ_G0020441) #17	Psmb9 (MGP_PahariEiJ_G0020442) #19	Tap1 (MGP_PahariEiJ_G0020443) #20	Psmb8 (MGP_PahariEiJ_G0020444) #21	Tap2 (MGP_PahariEiJ_G0020445) #22	MGP_PahariEiJ_G0020446	H2-Ob (MGP_PahariEiJ_G0020447) #23	H2-Ab1 (MGP_PahariEiJ_G0020448) #24	H2-Aa (MGP_PahariEiJ_G0020449)	MGP_PahariEiJ_G0020450	H2-Eb2 (MGP_PahariEiJ_G0020451) #26	Btnl2 (MGP_PahariEiJ_G0020452) #29	Btnl1 (MGP_PahariEiJ_G0020453)	Tsbp1 (MGP_PahariEiJ_G0020454) #30	MGP_PahariEiJ_G0020455	Notch4 (MGP_PahariEiJ_G0020456)	Gpsm3 (MGP_PahariEiJ_G0020457) #32	Pbx2 (MGP_PahariEiJ_G0020458) #33	Ager (MGP_PahariEiJ_G0020459) #34	Agpat1 (MGP_PahariEiJ_G0020461) #36
Rat	MODERN SPECIES	12	Vps52 (ENSRNOG00000000470)	Ring1 (ENSRNOG00000000467) #7	Hsd17b8 (ENSRNOG00000000466) #8	Slc39a7 (ENSRNOG00000000465) #9	Rxrb (ENSRNOG00000000464) #10	Col11a2 (ENSRNOG00000000463) #11	RT1-Hb-ps1 (ENSRNOG00000061936) #13	RT1-Ha (ENSRNOG00000045908) #12	RT1-DOa (ENSRNOG00000026762) #14	Brd2 (ENSRNOG00000000461) #15	RT1-DMa (ENSRNOG00000066773) #17	RT1-DMb (ENSRNOG00000049491) #18	Psmb9 (ENSRNOG00000000459) #19	Tap1 (ENSRNOG00000000457) #20	Psmb8 (ENSRNOG00000000456) #21	Tap2 (ENSRNOG00000000455) #22	RT1-DOb (ENSRNOG00000000454) #23	RT1-Bb (ENSRNOG00000032708) #24	RT1-Ba (ENSRNOG00000000451)	RT1-Db1 (ENSRNOG00000033215)	RT1-Db2 (ENSRNOG00000030431)	RT1-Da (ENSRNOG00000032844) #28	Btnl2 (ENSRNOG00000028541) #29	Btnl3 (ENSRNOG00000039396)	Tsbp1 (ENSRNOG00000039398) #30	Btn3a2 (ENSRNOG00000068592)	Btnl5 (ENSRNOG00000047304)	AABR07044388.4 (ENSRNOG00000052710)	Btnl7 (ENSRNOG00000000446)	Btnl8 (ENSRNOG00000064738)	Btnl4 (ENSRNOG00000068088)
Lesser Egyptian jerboa	MODERN SPECIES	41	Rps18 (ENSJJAG00000018899)	Vps52 (ENSJJAG00000020884)	Ring1 (ENSJJAG00000022246) #7	Hsd17b8 (ENSJJAG00000021794) #8	Slc39a7 (ENSJJAG00000014121) #9	Rxrb (ENSJJAG00000004710) #10	Col11a2 (ENSJJAG00000010448) #11	ENSJJAG00000023713 #13	H2-Oa (ENSJJAG00000000542) #14	Brd2 (ENSJJAG00000010183) #15	H2-DMa (ENSJJAG00000012555) #17	ENSJJAG00000004664 #18	Psmb9 (ENSJJAG00000022884) #19	Tap1 (ENSJJAG00000022861) #20	Psmb8 (ENSJJAG00000023598) #21	Tap2 (ENSJJAG00000004300) #22	ENSJJAG00000003836	H2-Ob (ENSJJAG00000022338) #23
Kangaroo rat	MODERN SPECIES	519	Vps52 (ENSDORG00000013822)	Ring1 (ENSDORG00000013820) #7	Hsd17b8 (ENSDORG00000013819) #8	Slc39a7 (ENSDORG00000013818) #9	Rxrb (ENSDORG00000013816) #10	Col11a2 (ENSDORG00000013815) #11	ENSDORG00000024606 #13	ENSDORG00000004500 #12	H2-Oa (ENSDORG00000004499) #14	Brd2 (ENSDORG00000004497) #15	ENSDORG00000005173 #17	ENSDORG00000005172 #18	Psmb9 (ENSDORG00000006231) #19	Tap1 (ENSDORG00000029698) #20	Psmb8 (ENSDORG00000028592) #21	Tap2 (ENSDORG00000008311) #22	ENSDORG00000008310 #23	ENSDORG00000011904	ENSDORG00000006991 #26	ENSDORG00000029602 #26	ENSDORG00000024908	H2-Ea (ENSDORG00000014782) #28	ENSDORG00000028297	ENSDORG00000009936	Gpsm3 (ENSDORG00000025609) #32	Pbx2 (ENSDORG00000009932) #33	ENSDORG00000009930 #34	Rnf5 (ENSDORG00000023271) #35	Agpat1 (ENSDORG00000009925) #36	Egfl8 (ENSDORG00000019824) #37	Ppt2 (ENSDORG00000029200)
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #12	ENSGT00940000162390 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821	ENSGT00940000154993 #26	ENSGT00940000154723.b #24	ENSGT00940000155371	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957
Rabbit	MODERN SPECIES	3	B3GALT4 (ENSOCUG00000010550)	ENSOCUG00000010546	VPS52 (ENSOCUG00000010533)	HSD17B8 (ENSOCUG00000020995) #8	SLC39A7 (ENSOCUG00000011598) #9	RXRB (ENSOCUG00000011590) #10	COL11A2 (ENSOCUG00000016497) #11	HLA-DPB1 (ENSOCUG00000008721) #13	ENSOCUG00000003319 #14	BRD2 (ENSOCUG00000003097) #15	HLA-DMA (ENSOCUG00000022573) #17	HLA-DMB (ENSOCUG00000026567) #18	ENSOCUG00000002139 #19	TAP1 (ENSOCUG00000002135) #20	PSMB8 (ENSOCUG00000002131) #21	TAP2 (ENSOCUG00000002489) #22	HLA-DOB (ENSOCUG00000029437) #23	ENSOCUG00000002480	HLA-DQB1 (ENSOCUG00000002485) #24	ENSOCUG00000030453	ENSOCUG00000029731 #26	HLA-DRA (ENSOCUG00000009103) #28	ENSOCUG00000025822	ENSOCUG00000006769 #29	ENSOCUG00000021762	SFTA2 (ENSOCUG00000035950)	GTF2H4 (ENSOCUG00000021496)	DDR1 (ENSOCUG00000016487)	IER3 (ENSOCUG00000016451)	FLOT1 (ENSOCUG00000017308)	TUBB (ENSOCUG00000002187)
Pika	MODERN SPECIES	4582																ENSOPRG00000001644 #22	ENSOPRG00000001634 #23
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.d	ENSGT00940000155371.m.a	ENSGT00940000154993 #26	ENSGT00940000161821.c.a	ENSGT00940000155371.n	ENSGT00940000161847	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #30	ENSGT00940000162450
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000160499 #22
Common shrew	MODERN SPECIES	6712																ENSSARG00000009645 #22
Hedgehog	MODERN SPECIES	12688																TAP2 (ENSEEUG00000011038) #22
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.d	ENSGT00940000155371.m.a	ENSGT00940000154993 #26	ENSGT00940000161821.c.a	ENSGT00940000155371.n	ENSGT00940000161847	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #30	ENSGT00940000162450
Artiodactyla	ANCESTRAL SPECIES	15	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.d	ENSGT00940000155371.m.a.a	ENSGT00940000155371.m.a.b.b	ENSGT00940000154993 #26	ENSGT00940000155371.n	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32
Suina	ANCESTRAL SPECIES	17	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.d	ENSGT00940000155371.m.a.a	ENSGT00940000155371.n	ENSGT00940000154993 #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32
Pig	MODERN SPECIES	15	GFRAL (ENSSSCG00000001480)	HMGCLL1 (ENSSSCG00000001479)	BMP5 (ENSSSCG00000001478)	RING1 (ENSSSCG00000001477) #7	HSD17B8 (ENSSSCG00000001476) #8	SLC39A7 (ENSSSCG00000001475) #9	RXRB (ENSSSCG00000001474) #10	COL11A2 (ENSSSCG00000001473) #11	SLA-DOA (ENSSSCG00000001472) #14	BRD2 (ENSSSCG00000001471) #15	SLA-DMA (ENSSSCG00000001470) #17	SLA-DMB (ENSSSCG00000001469) #18	TAP1 (ENSSSCG00000025618) #20	PSMB9 (ENSSSCG00000001463) #19	PSMB8 (ENSSSCG00000026951) #21	TAP2 (ENSSSCG00000025593) #22	HLA-DOB (ENSSSCG00000001459) #23	ENSSSCG00000063263 #24	ENSSSCG00000001458	ENSSSCG00000043413	SLA-DQB1 (ENSSSCG00000001457) #24	ENSSSCG00000001456	ENSSSCG00000001455	ENSSSCG00000061569	ENSSSCG00000031336	ENSSSCG00000061450	HLA-DRA (ENSSSCG00000001453) #28	BTNL2 (ENSSSCG00000025071) #29	ENSSSCG00000027921	ENSSSCG00000033414	ENSSSCG00000030874
Chacoan peccary	MODERN SPECIES	782	HCRTR2 (ENSCWAG00000012598)	GFRAL (ENSCWAG00000012676)	HMGCLL1 (ENSCWAG00000012792)	BMP5 (ENSCWAG00000013472)	RING1 (ENSCWAG00000013538) #7	HSD17B8 (ENSCWAG00000013599) #8	SLC39A7 (ENSCWAG00000013691) #9	COL11A2 (ENSCWAG00000013860) #11	HLA-DOA (ENSCWAG00000015899) #14	BRD2 (ENSCWAG00000015939) #15	HLA-DMA (ENSCWAG00000016104) #17	HLA-DMB (ENSCWAG00000016177) #18	PSMB9 (ENSCWAG00000016225) #19	TAP1 (ENSCWAG00000016313) #20	PSMB8 (ENSCWAG00000016617) #21	TAP2 (ENSCWAG00000016671) #22	ENSCWAG00000016717 #23	ENSCWAG00000016773 #23	HLA-DQB1 (ENSCWAG00000016835) #24	ENSCWAG00000016903	ENSCWAG00000016932	ENSCWAG00000016954 #26	HLA-DRA (ENSCWAG00000016997) #28	BTNL2 (ENSCWAG00000017038) #29	ENSCWAG00000017173	ENSCWAG00000017259	ENSCWAG00000017301	ENSCWAG00000017332 #30	ENSCWAG00000017375	NOTCH4 (ENSCWAG00000017439) #31	GPSM3 (ENSCWAG00000017614) #32
Artiodactyla_a	ANCESTRAL SPECIES	19	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.d	ENSGT00940000155371.m.a.a	ENSGT00940000154993 #26	ENSGT00940000155371.m.a.b.b	ENSGT00940000155371.m.b	ENSGT00940000155371.n	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31
Camelidae	ANCESTRAL SPECIES	13	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.jb #24	ENSGT00940000155371.m.b	ENSGT00940000154723.b.ib #24	ENSGT00940000161821.d	ENSGT00940000155371.m.a.a	ENSGT00940000155371.m.a.b.a	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32
Arabian camel	MODERN SPECIES	12	RXRB (ENSCDRG00005021632) #10	COL11A2 (ENSCDRG00005021542) #11	HLA-DPB1 (ENSCDRG00005021506) #13	HLA-DPA1 (ENSCDRG00005021505) #12	HLA-DOA (ENSCDRG00005021502) #14	BRD2 (ENSCDRG00005021496) #15	HLA-DMA (ENSCDRG00005021489) #17	HLA-DMB (ENSCDRG00005021484) #18	PSMB9 (ENSCDRG00005021480) #19	TAP1 (ENSCDRG00005021477) #20	PSMB8 (ENSCDRG00005021475) #21	HLA-DOB (ENSCDRG00005021474) #23	ENSCDRG00005021472 #24	ENSCDRG00005021469	ENSCDRG00005021466	TAP2 (ENSCDRG00005021460) #22	ENSCDRG00005021455 #24	ENSCDRG00005021452 #24	ENSCDRG00005021448	ENSCDRG00005021439	ENSCDRG00005021434	HLA-DRA (ENSCDRG00005021429) #28	BTNL2 (ENSCDRG00005021424) #29	ENSCDRG00005021419	ENSCDRG00005021416	ENSCDRG00005021411 #30	ENSCDRG00005021398	NOTCH4 (ENSCDRG00005021381) #31	GPSM3 (ENSCDRG00005021372) #32	PBX2 (ENSCDRG00005021366) #33	AGER (ENSCDRG00005021314) #34
Alpaca	MODERN SPECIES	2777													PSMB9 (ENSVPAG00000012498) #19	ENSVPAG00000012497 #20	PSMB8 (ENSVPAG00000012496) #21	ENSVPAG00000012495 #22	ENSVPAG00000012493 #23
Artiodactyla_b	ANCESTRAL SPECIES	15	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.c.b	ENSGT00940000155371.m.a.b.b	ENSGT00940000154993 #26	ENSGT00940000155371.m.a.a	ENSGT00940000161821.d	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b
Cetacea	ANCESTRAL SPECIES	7	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022.g #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318	ENSGT00940000155008.C	ENSGT00390000016954
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022.g #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318	ENSGT00940000155008.C	ENSGT00390000016954
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022.g #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318	ENSGT00940000153769.C	ENSGT00940000155008.C
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00390000008815	ENSGT00940000161022.g #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162112 #14	ENSGT00940000154732.q.b.a	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000153769.C	ENSGT00940000155008.C	ENSGT00390000016954
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00390000008815	ENSGT00940000161022.g #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162112 #14	ENSGT00940000154732.q.b.a	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318	ENSGT00940000155008.C	ENSGT00390000016954
Narwhal	MODERN SPECIES	310	VPS52 (ENSMMNG00015012607)	ENSMMNG00015012638 #7	HSD17B8 (ENSMMNG00015012658) #8	SLC39A7 (ENSMMNG00015012682) #9	RXRB (ENSMMNG00015012697) #10	COL11A2 (ENSMMNG00015012846) #11	ENSMMNG00015013117 #13	HLA-DOA (ENSMMNG00015013123) #14	ENSMMNG00015013152	BRD2 (ENSMMNG00015013179) #15	HLA-DMA (ENSMMNG00015013256) #17	HLA-DMB (ENSMMNG00015013276) #18	PSMB9 (ENSMMNG00015013288) #19	TAP1 (ENSMMNG00015013311) #20	PSMB8 (ENSMMNG00015013325) #21	TAP2 (ENSMMNG00015013343) #22	HLA-DOB (ENSMMNG00015013519) #23	ENSMMNG00015013533	GCLC (ENSMMNG00015013551)	KLHL31 (ENSMMNG00015013579)	LRRC1 (ENSMMNG00015013594)	MLIP (ENSMMNG00015013648)	ENSMMNG00015013701	TINAG (ENSMMNG00015013728)	FAM83B (ENSMMNG00015013752)	HCRTR2 (ENSMMNG00015013768)	GFRAL (ENSMMNG00015013778)	HMGCLL1 (ENSMMNG00015013822)	BMP5 (ENSMMNG00015013873)	COL21A1 (ENSMMNG00015013907)	DST (ENSMMNG00015014103)
Beluga whale	MODERN SPECIES	8	RPS18 (ENSDLEG00000009077)	VPS52 (ENSDLEG00000008948)	RING1 (ENSDLEG00000008919) #7	HSD17B8 (ENSDLEG00000008819) #8	SLC39A7 (ENSDLEG00000008789) #9	RXRB (ENSDLEG00000008760) #10	COL11A2 (ENSDLEG00000008562) #11	HLA-DOA (ENSDLEG00000008482) #14	ENSDLEG00000008322	BRD2 (ENSDLEG00000008248) #15	HLA-DMA (ENSDLEG00000008210) #17	HLA-DMB (ENSDLEG00000008166) #18	PSMB9 (ENSDLEG00000008143) #19	TAP1 (ENSDLEG00000021996) #20	PSMB8 (ENSDLEG00000021995) #21	TAP2 (ENSDLEG00000021994) #22	ENSDLEG00000021992	GCLC (ENSDLEG00000021991)	KLHL31 (ENSDLEG00000021990)	ENSDLEG00000021989	LRRC1 (ENSDLEG00000021988)	MLIP (ENSDLEG00000021987)	ENSDLEG00000021986	TINAG (ENSDLEG00000021985)	FAM83B (ENSDLEG00000021984)	HCRTR2 (ENSDLEG00000021982)	GFRAL (ENSDLEG00000021981)	HMGCLL1 (ENSDLEG00000021980)	BMP5 (ENSDLEG00000021979)	ENSDLEG00000021977	DST (ENSDLEG00000021102)
Vaquita	MODERN SPECIES	2	VPS52 (ENSPSNG00000020483)	RING1 (ENSPSNG00000020433) #7	HSD17B8 (ENSPSNG00000020389) #8	SLC39A7 (ENSPSNG00000020344) #9	RXRB (ENSPSNG00000020305) #10	COL11A2 (ENSPSNG00000019010) #11	ENSPSNG00000018732 #13	HLA-DOA (ENSPSNG00000018672) #14	ENSPSNG00000018620	BRD2 (ENSPSNG00000018549) #15	HLA-DMA (ENSPSNG00000018364) #17	HLA-DMB (ENSPSNG00000018284) #18	PSMB9 (ENSPSNG00000018232) #19	TAP1 (ENSPSNG00000018201) #20	PSMB8 (ENSPSNG00000018160) #21	TAP2 (ENSPSNG00000018051) #22	HLA-DOB (ENSPSNG00000017969) #23	ENSPSNG00000017762	GCLC (ENSPSNG00000017555)	KLHL31 (ENSPSNG00000017492)	ENSPSNG00000017462	MLIP (ENSPSNG00000017046)	TINAG (ENSPSNG00000016830)	FAM83B (ENSPSNG00000016755)	HCRTR2 (ENSPSNG00000016655)	GFRAL (ENSPSNG00000016509)	HMGCLL1 (ENSPSNG00000016099)	BMP5 (ENSPSNG00000015931)	ENSPSNG00000015738	DST (ENSPSNG00000015242)	BEND6 (ENSPSNG00000014810)
Dolphin	MODERN SPECIES	2738	WDR46 (ENSTTRG00000004304)	RPS18 (ENSTTRG00000004302)	VPS52 (ENSTTRG00000004298)	RING1 (ENSTTRG00000004296) #7	HSD17B8 (ENSTTRG00000004294) #8	SLC39A7 (ENSTTRG00000004293) #9	RXRB (ENSTTRG00000004291) #10	COL11A2 (ENSTTRG00000004283) #11	HLA-DOA (ENSTTRG00000004282) #14	BRD2 (ENSTTRG00000004278) #15	HLA-DMA (ENSTTRG00000004277) #17	HLA-DMB (ENSTTRG00000004276) #18	PSMB9 (ENSTTRG00000004272) #19	TAP1 (ENSTTRG00000004264) #20	PSMB8 (ENSTTRG00000004259) #21	TAP2 (ENSTTRG00000004254) #22	HLA-DOB (ENSTTRG00000004249) #23
Sperm whale	MODERN SPECIES	9	CUTA (ENSPCTG00005012115)	PHF1 (ENSPCTG00005012052)	KIFC1 (ENSPCTG00005012002)	ENSPCTG00005011963	RING1 (ENSPCTG00005011923) #7	HSD17B8 (ENSPCTG00005011876) #8	SLC39A7 (ENSPCTG00005011775) #9	RXRB (ENSPCTG00005011572) #10	COL11A2 (ENSPCTG00005009478) #11	HLA-DOA (ENSPCTG00005009319) #14	ENSPCTG00005009114 #15	HLA-DMB (ENSPCTG00005009080) #18	PSMB9 (ENSPCTG00005008969) #19	TAP1 (ENSPCTG00005021480) #20	PSMB8 (ENSPCTG00005021456) #21	TAP2 (ENSPCTG00005021415) #22	HLA-DOB (ENSPCTG00005021383) #23	ENSPCTG00005021294 #13	GCLC (ENSPCTG00005021190)	KLHL31 (ENSPCTG00005021169)	LRRC1 (ENSPCTG00005021134)	MLIP (ENSPCTG00005020921)	TINAG (ENSPCTG00005020766)	FAM83B (ENSPCTG00005020744)	HCRTR2 (ENSPCTG00005020624)	GFRAL (ENSPCTG00005020543)	HMGCLL1 (ENSPCTG00005020290)	BMP5 (ENSPCTG00005020211)	COL21A1 (ENSPCTG00005020038)	DST (ENSPCTG00005015073)	BEND6 (ENSPCTG00005014566)
Blue whale	MODERN SPECIES	2	RPS18 (ENSBMSG00010010743)	VPS52 (ENSBMSG00010010756)	ENSBMSG00010010769 #7	HSD17B8 (ENSBMSG00010010786) #8	SLC39A7 (ENSBMSG00010010802) #9	RXRB (ENSBMSG00010010818) #10	COL11A2 (ENSBMSG00010010982) #11	ENSBMSG00010011366 #13	HLA-DOA (ENSBMSG00010011380) #14	BRD2 (ENSBMSG00010011399) #15	HLA-DMA (ENSBMSG00010011432) #17	HLA-DMB (ENSBMSG00010011446) #18	PSMB9 (ENSBMSG00010011462) #19	TAP1 (ENSBMSG00010011477) #20	PSMB8 (ENSBMSG00010011493) #21	TAP2 (ENSBMSG00010011505) #22	HLA-DOB (ENSBMSG00010011526) #23	ENSBMSG00010011564	GCLC (ENSBMSG00010011645)	KLHL31 (ENSBMSG00010011739)	LRRC1 (ENSBMSG00010011758)	MLIP (ENSBMSG00010011840)	TINAG (ENSBMSG00010011903)	FAM83B (ENSBMSG00010011937)	HCRTR2 (ENSBMSG00010011945)	GFRAL (ENSBMSG00010011956)	HMGCLL1 (ENSBMSG00010011994)	BMP5 (ENSBMSG00010012051)	ENSBMSG00010012065	ENSBMSG00010012074	ENSBMSG00010012133
Pecora	ANCESTRAL SPECIES	21	ENSGT00940000161798	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.c.b	ENSGT00940000155371.m.a.a	ENSGT00940000154993 #26	ENSGT00940000155371.m.a.b.b	ENSGT00940000155371.m.a.b.a	ENSGT00940000161821.d	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889
Percora_a	ANCESTRAL SPECIES	12	ENSGT00940000161798	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.d.f	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Bovidae	ANCESTRAL SPECIES	13	ENSGT00940000161798	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.nb #24	ENSGT00940000161821.d.f	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Caprinae	ANCESTRAL SPECIES	16	ENSGT00940000161798	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.nb #24	ENSGT00940000161821.d.f	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Goat	MODERN SPECIES	15	B3GALT4 (ENSCHIG00000013295)	RPS18 (ENSCHIG00000025263)	VPS52 (ENSCHIG00000023524)	RING1 (ENSCHIG00000015685) #7	HSD17B8 (ENSCHIG00000017839) #8	SLC39A7 (ENSCHIG00000024209) #9	RXRB (ENSCHIG00000010266) #10	COL11A2 (ENSCHIG00000012269) #11	HLA-DOA (ENSCHIG00000014302) #14	BRD2 (ENSCHIG00000013946) #15	HLA-DMA (ENSCHIG00000009464) #17	HLA-DMB (ENSCHIG00000026519) #18	PSMB9 (ENSCHIG00000021513) #19	TAP1 (ENSCHIG00000021983) #20	PSMB8 (ENSCHIG00000012829) #21	TAP2 (ENSCHIG00000017732) #22	ENSCHIG00000019853	HLA-DOB (ENSCHIG00000010527) #23	ENSCHIG00000013102 #24	ENSCHIG00000022158	ENSCHIG00000009662	GCLC (ENSCHIG00000013397)	KLHL31 (ENSCHIG00000003573)	LRRC1 (ENSCHIG00000021002)	ENSCHIG00000020109	TINAG (ENSCHIG00000010892)	FAM83B (ENSCHIG00000019707)	HCRTR2 (ENSCHIG00000000459)	GFRAL (ENSCHIG00000008200)	HMGCLL1 (ENSCHIG00000017734)	BMP5 (ENSCHIG00000010429)
Rambouillet Sheep	MODERN SPECIES	12	B3GALT4 (ENSOARG00020012594)	RPS18 (ENSOARG00020012536)	VPS52 (ENSOARG00020012385)	RING1 (ENSOARG00020012299) #7	HSD17B8 (ENSOARG00020012212) #8	SLC39A7 (ENSOARG00020012152) #9	RXRB (ENSOARG00020011980) #10	COL11A2 (ENSOARG00020011636) #11	HLA-DOA (ENSOARG00020011582) #14	BRD2 (ENSOARG00020011534) #15	HLA-DMA (ENSOARG00020025286) #17	HLA-DMB (ENSOARG00020025272) #18	ENSOARG00020025249 #19	TAP1 (ENSOARG00020025187) #20	PSMB8 (ENSOARG00020025156) #21	TAP2 (ENSOARG00020025129) #22	HLA-DOB (ENSOARG00020025120) #23	ENSOARG00020025111 #24	ENSOARG00020025100	DYA (ENSOARG00020025089)	ENSOARG00020025077 #24	ENSOARG00020025038	ENSOARG00020025022	ENSOARG00020025012	GCLC (ENSOARG00020024970)	KLHL31 (ENSOARG00020024949)	LRRC1 (ENSOARG00020024930)	TINAG (ENSOARG00020024710)	ENSOARG00020024682	ENSOARG00020024669	FAM83B (ENSOARG00020024658)
Bovinae	ANCESTRAL SPECIES	9	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.nb.d #24	ENSGT00940000161821.d.f	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Bos	ANCESTRAL SPECIES	17	ENSGT00390000012691.d	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.nb.d #24	ENSGT00940000161821.d.f	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Bos_a	ANCESTRAL SPECIES	11	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.nb.d #24	ENSGT00940000161821.d.f	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Wild yak	MODERN SPECIES	401	ENSBMUG00000008818	VPS52 (ENSBMUG00000008802)	RING1 (ENSBMUG00000008786) #7	HSD17B8 (ENSBMUG00000008752) #8	SLC39A7 (ENSBMUG00000008706) #9	RXRB (ENSBMUG00000008461) #10	COL11A2 (ENSBMUG00000008342) #11	HLA-DOA (ENSBMUG00000008090) #14	BRD2 (ENSBMUG00000008066) #15	HLA-DMA (ENSBMUG00000008047) #17	HLA-DMB (ENSBMUG00000008003) #18	ENSBMUG00000007993	PSMB9 (ENSBMUG00000007982) #19	TAP1 (ENSBMUG00000007967) #20	PSMB8 (ENSBMUG00000007942) #21	TAP2 (ENSBMUG00000007931) #22	HLA-DOB (ENSBMUG00000007908) #23	ENSBMUG00000007890 #24	ENSBMUG00000007873	ENSBMUG00000006036	GCLC (ENSBMUG00000005430)	KLHL31 (ENSBMUG00000005354)	LRRC1 (ENSBMUG00000005342)
Domestic yak	MODERN SPECIES	16	WDR46 (ENSBGRG00000017950)	B3GALT4 (ENSBGRG00000018285)	VPS52 (ENSBGRG00000018459)	RING1 (ENSBGRG00000018754) #7	HSD17B8 (ENSBGRG00000018839) #8	SLC39A7 (ENSBGRG00000018980) #9	RXRB (ENSBGRG00000019018) #10	COL11A2 (ENSBGRG00000019137) #11	HLA-DOA (ENSBGRG00000021588) #14	BRD2 (ENSBGRG00000021629) #15	HLA-DMA (ENSBGRG00000021851) #17	HLA-DMB (ENSBGRG00000021922) #18	ENSBGRG00000021991 #19	TAP1 (ENSBGRG00000022060) #20	PSMB8 (ENSBGRG00000022108) #21	TAP2 (ENSBGRG00000022189) #22	HLA-DOB (ENSBGRG00000022347) #23	ENSBGRG00000022408 #24	ENSBGRG00000022452	ENSBGRG00000022508	ENSBGRG00000022571	GCLC (ENSBGRG00000022619)	KLHL31 (ENSBGRG00000023447)	LRRC1 (ENSBGRG00000023507)	MLIP (ENSBGRG00000023693)	ENSBGRG00000024111	TINAG (ENSBGRG00000024130)	FAM83B (ENSBGRG00000024257)	HCRTR2 (ENSBGRG00000024278)	GFRAL (ENSBGRG00000024326)	HMGCLL1 (ENSBGRG00000024393)
Bos_b	ANCESTRAL SPECIES	8	ENSGT00390000012691.d	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.nb.d #24	ENSGT00940000161821.d.f	ENSGT00940000155371.m.b	ENSGT00390000011908	ENSGT00940000158352	ENSGT00940000154025.b	ENSGT00390000015862	ENSGT00940000161065	ENSGT00940000157889	ENSGT01070000253744.a.a.b.b	ENSGT00730000111274	ENSGT00940000159467	ENSGT00940000158644	ENSGT00940000162318
Cow	MODERN SPECIES	15	RPS18 (ENSBTAG00000002648)	VPS52 (ENSBTAG00000002643)	RING1 (ENSBTAG00000018884) #7	HSD17B8 (ENSBTAG00000020927) #8	SLC39A7 (ENSBTAG00000008191) #9	RXRB (ENSBTAG00000000602) #10	COL11A2 (ENSBTAG00000000601) #11	BOLA-DOA (ENSBTAG00000006490) #14	BRD2 (ENSBTAG00000011074) #15	BOLA-DMA (ENSBTAG00000015730) #17	BOLA-DMB (ENSBTAG00000012451) #18	H2B (ENSBTAG00000051545)	PSMB9 (ENSBTAG00000008954) #19	TAP1 (ENSBTAG00000008953) #20	PSMB8 (ENSBTAG00000003039) #21	TAP2 (ENSBTAG00000003038) #22	BOLA-DOB (ENSBTAG00000047707) #23	BOLA-DYB (ENSBTAG00000045923) #24	BOLA-DYA (ENSBTAG00000002581)	DSB (ENSBTAG00000050757)	GCLC (ENSBTAG00000015571)	KLHL31 (ENSBTAG00000018167)	LRRC1 (ENSBTAG00000017533)	MLIP (ENSBTAG00000014581)	TINAG (ENSBTAG00000012652)	FAM83B (ENSBTAG00000016058)	HCRTR2 (ENSBTAG00000011719)	GFRAL (ENSBTAG00000012973)	HMGCLL1 (ENSBTAG00000025718)	BMP5 (ENSBTAG00000012870)	ENSBTAG00000046193
Hybrid Bos Indicus	MODERN SPECIES	15	RPS18 (ENSBIXG00005006736)	VPS52 (ENSBIXG00005014413)	RING1 (ENSBIXG00005006128) #7	HSD17B8 (ENSBIXG00005001937) #8	SLC39A7 (ENSBIXG00005014473) #9	RXRB (ENSBIXG00005014520) #10	COL11A2 (ENSBIXG00005014598) #11	HLA-DOA (ENSBIXG00005014640) #14	BRD2 (ENSBIXG00005014704) #15	HLA-DMA (ENSBIXG00005014743) #17	HLA-DMB (ENSBIXG00005014762) #18	ENSBIXG00005014770	PSMB9 (ENSBIXG00005014787) #19	TAP1 (ENSBIXG00005014801) #20	PSMB8 (ENSBIXG00005014824) #21	TAP2 (ENSBIXG00005014872) #22	HLA-DOB (ENSBIXG00005014905) #23	ENSBIXG00005007128 #24	ENSBIXG00005014931	ENSBIXG00005014945	GCLC (ENSBIXG00005015026)	KLHL31 (ENSBIXG00005007502)	LRRC1 (ENSBIXG00005002222)	ENSBIXG00005015134	MLIP (ENSBIXG00005015301)	TINAG (ENSBIXG00005015398)	FAM83B (ENSBIXG00005015427)	HCRTR2 (ENSBIXG00005002278)	GFRAL (ENSBIXG00005006745)	HMGCLL1 (ENSBIXG00005015587)	BMP5 (ENSBIXG00005015628)
American bison	MODERN SPECIES	3186	RPS18 (ENSBBBG00000003625)	VPS52 (ENSBBBG00000003598)	RING1 (ENSBBBG00000003692) #7	HSD17B8 (ENSBBBG00000003696) #8	SLC39A7 (ENSBBBG00000014969) #9	RXRB (ENSBBBG00000015089) #10	ENSBBBG00000003746 #11	HLA-DOA (ENSBBBG00000015112) #14	BRD2 (ENSBBBG00000002785) #15	HLA-DMA (ENSBBBG00000015169) #17	HLA-DMB (ENSBBBG00000008914) #18	ENSBBBG00000015200	PSMB9 (ENSBBBG00000003777) #19	TAP1 (ENSBBBG00000015234) #20	PSMB8 (ENSBBBG00000015244) #21	TAP2 (ENSBBBG00000015257) #22	HLA-DOB (ENSBBBG00000015275) #23	ENSBBBG00000015280 #24	ENSBBBG00000015297	ENSBBBG00000015836	GCLC (ENSBBBG00000015998)	KLHL31 (ENSBBBG00000002569)	LRRC1 (ENSBBBG00000016027)	MLIP (ENSBBBG00000016140)	TINAG (ENSBBBG00000016191)	FAM83B (ENSBBBG00000016205)	HCRTR2 (ENSBBBG00000009059)	GFRAL (ENSBBBG00000016261)	HMGCLL1 (ENSBBBG00000016300)	BMP5 (ENSBBBG00000016316)	COL21A1 (ENSBBBG00000016434)
Yarkand deer	MODERN SPECIES	30	RGL2 (ENSCHYG00000004896)	PFDN6 (ENSCHYG00000004871)	WDR46 (ENSCHYG00000004759)	B3GALT4 (ENSCHYG00000004743)	RPS18 (ENSCHYG00000004733)	VPS52 (ENSCHYG00000004695)	RING1 (ENSCHYG00000004682) #7	COL11A2 (ENSCHYG00000004624) #11	HLA-DOA (ENSCHYG00000004561) #14	BRD2 (ENSCHYG00000004539) #15	HLA-DMA (ENSCHYG00000004520) #17	HLA-DMB (ENSCHYG00000004514) #18	ENSCHYG00000004500 #19	TAP1 (ENSCHYG00000004483) #20	PSMB8 (ENSCHYG00000004467) #21	TAP2 (ENSCHYG00000004426) #22	HLA-DOB (ENSCHYG00000004391) #23	ENSCHYG00000004368 #24	ENSCHYG00000004358	ENSCHYG00000004336	GCLC (ENSCHYG00000004293)	KLHL31 (ENSCHYG00000004258)	LRRC1 (ENSCHYG00000004239)	TINAG (ENSCHYG00000004199)	MLIP (ENSCHYG00000004113)	FAM83B (ENSCHYG00000004082)	HCRTR2 (ENSCHYG00000004073)	GFRAL (ENSCHYG00000004059)	ENSCHYG00000003978	BMP5 (ENSCHYG00000003939)	COL21A1 (ENSCHYG00000003914)
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821.c.a	ENSGT00940000155371.n	ENSGT00940000160997 #28	ENSGT00940000154993 #26	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36	ENSGT00940000162975 #37	ENSGT00940000155779.a.b	ENSGT00940000162382	ENSGT00920000149187	ENSGT00940000160798	ENSGT00940000155565	ENSGT00940000158338
Carnivora	ANCESTRAL SPECIES	4	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.c.a	ENSGT00940000155371.n	ENSGT00940000154993 #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33
Caniformia	ANCESTRAL SPECIES	3	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.c.a	ENSGT00940000155371.n	ENSGT00940000161847	ENSGT00940000154993 #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #30	ENSGT00940000162450.p	ENSGT00940000163287 #31	ENSGT00390000002471 #32
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.c.a	ENSGT00940000154993 #26	ENSGT00940000160997 #28	ENSGT00940000155371.n	ENSGT00940000161847	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #30	ENSGT00940000162450.p	ENSGT00940000163287 #31	ENSGT00390000002471 #32
Ursidae	ANCESTRAL SPECIES	37	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00950000183198.c.a.b.b.j	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.c.a	ENSGT00940000155371.n	ENSGT00940000161847	ENSGT00940000160997 #28	ENSGT00940000162484.d #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00940000153527.c.c.b	ENSGT00530000064839 #30	ENSGT00940000162450.p.a	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33
Ursus	ANCESTRAL SPECIES	53	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00950000183198.c.a.b.b.j	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.c.a	ENSGT00940000155371.n	ENSGT00940000160997 #28	ENSGT00940000162484.d #29
Polar bear	MODERN SPECIES	184	RING1 (ENSUMAG00000012543) #7	HSD17B8 (ENSUMAG00000012548) #8	SLC39A7 (ENSUMAG00000012560) #9	RXRB (ENSUMAG00000012569) #10	ENSUMAG00000012592 #11	ENSUMAG00000012616 #12	HLA-DOA (ENSUMAG00000012626) #14	ENSUMAG00000012634 #15	ENSUMAG00000012662 #15	HLA-DMA (ENSUMAG00000012683) #17	HLA-DMB (ENSUMAG00000012688) #18	ENSUMAG00000012692	PSMB9 (ENSUMAG00000012694) #19	TAP1 (ENSUMAG00000012701) #20	PSMB8 (ENSUMAG00000012731) #21	TAP2 (ENSUMAG00000012745) #22	HLA-DOB (ENSUMAG00000012747) #23	ENSUMAG00000012755	ENSUMAG00000012761	HLA-DQB2 (ENSUMAG00000012766) #24	ENSUMAG00000012768	ENSUMAG00000012771	HLA-DRA (ENSUMAG00000012775) #28	ENSUMAG00000012781 #29
American black bear	MODERN SPECIES	3108													PSMB9 (ENSUAMG00000013935) #19	TAP1 (ENSUAMG00000013932) #20	PSMB8 (ENSUAMG00000013929) #21	TAP2 (ENSUAMG00000013187) #22	HLA-DOB (ENSUAMG00000013172) #23	ENSUAMG00000013161 #24
Giant Panda	MODERN SPECIES	15	VPS52 (ENSAMEG00000001640)	RING1 (ENSAMEG00000001680) #7	HSD17B8 (ENSAMEG00000001698) #8	SLC39A7 (ENSAMEG00000001707) #9	RXRB (ENSAMEG00000001719) #10	COL11A2 (ENSAMEG00000001744) #11	ENSAMEG00000001900 #13	HLA-DPA1 (ENSAMEG00000001901) #12	HLA-DOA (ENSAMEG00000001908) #14	BRD2 (ENSAMEG00000001926) #15	HLA-DMB (ENSAMEG00000001952) #18	ENSAMEG00000027435	PSMB9 (ENSAMEG00000001961) #19	TAP1 (ENSAMEG00000001976) #20	PSMB8 (ENSAMEG00000002026) #21	TAP2 (ENSAMEG00000002044) #22	HLA-DOB (ENSAMEG00000029901) #23	ENSAMEG00000026802 #24	ENSAMEG00000024677	ENSAMEG00000002342	HLA-DRA (ENSAMEG00000002390) #28	BTNL2 (ENSAMEG00000002403) #29	ENSAMEG00000002462	ENSAMEG00000002434	ENSAMEG00000024700 #30	ENSAMEG00000002606	NOTCH4 (ENSAMEG00000002549) #31	GPSM3 (ENSAMEG00000002539) #32	PBX2 (ENSAMEG00000002519) #33	AGER (ENSAMEG00000002492) #34	RNF5 (ENSAMEG00000002477) #35
Mustelinae	ANCESTRAL SPECIES	65	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23
American mink	MODERN SPECIES	609			HSD17B8 (ENSNVIG00000006535) #8	SLC39A7 (ENSNVIG00000006519) #9	RXRB (ENSNVIG00000006480) #10	COL11A2 (ENSNVIG00000006062) #11	ENSNVIG00000004899 #13	HLA-DPA1 (ENSNVIG00000004863) #12	HLA-DOA (ENSNVIG00000004843) #14	BRD2 (ENSNVIG00000004773) #15	HLA-DMA (ENSNVIG00000004747) #17	HLA-DMB (ENSNVIG00000004727) #18	PSMB9 (ENSNVIG00000004695) #19	TAP1 (ENSNVIG00000004678) #20	PSMB8 (ENSNVIG00000004658) #21	TAP2 (ENSNVIG00000004605) #22	HLA-DOB (ENSNVIG00000004582) #23
Ferret	MODERN SPECIES	318	RING1 (ENSMPUG00000002279) #7	SLC39A7 (ENSMPUG00000002276) #9	RXRB (ENSMPUG00000002273) #10	COL11A2 (ENSMPUG00000001968) #11	ENSMPUG00000001964 #13	HLA-DPA1 (ENSMPUG00000001961) #12	ENSMPUG00000001959	HLA-DOA (ENSMPUG00000001958) #14	BRD2 (ENSMPUG00000001955) #15	ENSMPUG00000001954	HLA-DMA (ENSMPUG00000001944) #17	HLA-DMB (ENSMPUG00000001943) #18	PSMB9 (ENSMPUG00000001940) #19	TAP1 (ENSMPUG00000001935) #20	PSMB8 (ENSMPUG00000001933) #21	ENSMPUG00000001931 #22	ENSMPUG00000001924 #23
Canidae	ANCESTRAL SPECIES	6	ENSGT00390000008815.g.b	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.c.a	ENSGT00940000155371.n	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00940000162450.p	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36	ENSGT00940000162975 #37
Canis_lupus	ANCESTRAL SPECIES	11	ENSGT00390000012691.c.b	ENSGT00390000008815.g.b	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821.c.a	ENSGT00940000155371.n	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00940000162450.o	ENSGT00940000162450.p	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36
Dog	MODERN SPECIES	3	B3GALT4 (ENSCAFG00845020962)	RPS18 (ENSCAFG00845020845)	VPS52 (ENSCAFG00845020730)	RING1 (ENSCAFG00845020668) #7	HSD17B8 (ENSCAFG00845020603) #8	SLC39A7 (ENSCAFG00845020536) #9	RXRB (ENSCAFG00845020447) #10	COL11A2 (ENSCAFG00845019587) #11	ENSCAFG00845019114 #13	DLA-DOA (ENSCAFG00845018933) #14	BRD2 (ENSCAFG00845018726) #15	DLA-DMA (ENSCAFG00845018613) #17	DLA-DMB (ENSCAFG00845018536) #18	PSMB9 (ENSCAFG00845018485) #19	PSMB8 (ENSCAFG00845018353) #20	TAP2 (ENSCAFG00845017879) #22	HLA-DQB2 (ENSCAFG00845017781) #24	DLA-DQA1 (ENSCAFG00845017728)	DLA-DRA (ENSCAFG00845017467) #28	ENSCAFG00845017367	BTNL2 (ENSCAFG00845017222) #29	ENSCAFG00845017104	ENSCAFG00845016990	ENSCAFG00845016861	ENSCAFG00845016831	ENSCAFG00845016762	ENSCAFG00845016724	GPSM3 (ENSCAFG00845016471) #32	PBX2 (ENSCAFG00845016393) #33	AGER (ENSCAFG00845014982) #34	RNF5 (ENSCAFG00845014858) #35
Dingo	MODERN SPECIES	276	ENSCAFG00020003224	RING1 (ENSCAFG00020003221) #7	HSD17B8 (ENSCAFG00020003175) #8	SLC39A7 (ENSCAFG00020003166) #9	RXRB (ENSCAFG00020003098) #10	ENSCAFG00020003093 #11	ENSCAFG00020003072 #11	ENSCAFG00020002592 #13	HLA-DOA (ENSCAFG00020002545) #14	BRD2 (ENSCAFG00020002542) #15	HLA-DMA (ENSCAFG00020002536) #17	HLA-DMB (ENSCAFG00020002532) #18	PSMB9 (ENSCAFG00020002528) #19	TAP1 (ENSCAFG00020002523) #20	PSMB8 (ENSCAFG00020002521) #21	TAP2 (ENSCAFG00020001827) #22	HLA-DOB (ENSCAFG00020001693) #23	ENSCAFG00020001685 #24	HLA-DQB1 (ENSCAFG00020001679) #24	ENSCAFG00020001673	ENSCAFG00020001671	HLA-DRA (ENSCAFG00020001663) #28	ENSCAFG00020001656	BTNL2 (ENSCAFG00020001628) #29	ENSCAFG00020001614	ENSCAFG00020001606	ENSCAFG00020001600	ENSCAFG00020001586	ENSCAFG00020001581	ENSCAFG00020001552	GPSM3 (ENSCAFG00020001306) #32
Red fox	MODERN SPECIES	7	RPS18 (ENSVVUG00000025443)	ENSVVUG00000025286	RING1 (ENSVVUG00000025271) #7	HSD17B8 (ENSVVUG00000025268) #8	SLC39A7 (ENSVVUG00000025265) #9	RXRB (ENSVVUG00000025262) #10	ENSVVUG00000025174 #13	HLA-DPA1 (ENSVVUG00000025137) #12	HLA-DOA (ENSVVUG00000025133) #14	BRD2 (ENSVVUG00000025130) #15	HLA-DMA (ENSVVUG00000025127) #17	HLA-DMB (ENSVVUG00000025122) #18	PSMB9 (ENSVVUG00000025119) #19	TAP1 (ENSVVUG00000025116) #20	PSMB8 (ENSVVUG00000025115) #21	TAP2 (ENSVVUG00000025111) #22	HLA-DOB (ENSVVUG00000025078) #23	ENSVVUG00000025071 #24
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762.cc #11	ENSGT00940000162390.q #13	ENSGT00940000162390.p #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000155371.n.a.b	ENSGT00940000155371.n.a.a	ENSGT00940000154993 #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450.q	ENSGT00940000163287.b #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762.cc #11	ENSGT00940000162390.p #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000155371.n.a.b	ENSGT00940000155371.n.a.a	ENSGT00940000154993.a.a #26	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079	ENSGT00530000064839 #30	ENSGT00940000162450.q	ENSGT00940000163287.b #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35
Tiger	MODERN SPECIES	415	RING1 (ENSPTIG00000005545) #7	HSD17B8 (ENSPTIG00000005554) #8	SLC39A7 (ENSPTIG00000005581) #9	RXRB (ENSPTIG00000005607) #10	COL11A2 (ENSPTIG00000005735) #11	HLA-DPB1 (ENSPTIG00000005931) #13	HLA-DPA1 (ENSPTIG00000005948) #12	HLA-DOA (ENSPTIG00000005964) #14	BRD2 (ENSPTIG00000005977) #15	ENSPTIG00000006002 #16	HLA-DMA (ENSPTIG00000006011) #17	HLA-DMB (ENSPTIG00000006035) #18	PSMB9 (ENSPTIG00000006050) #19	TAP1 (ENSPTIG00000006078) #20	PSMB8 (ENSPTIG00000006141) #21	TAP2 (ENSPTIG00000006162) #22	HLA-DOB (ENSPTIG00000006225) #23	ENSPTIG00000006266	ENSPTIG00000006308	HLA-DRA (ENSPTIG00000006439) #28	ENSPTIG00000006461 #26	BTNL2 (ENSPTIG00000006701) #29	ENSPTIG00000006731	ENSPTIG00000006752	ENSPTIG00000006805	ENSPTIG00000006816	NOTCH4 (ENSPTIG00000006842) #31	GPSM3 (ENSPTIG00000006883) #32	PBX2 (ENSPTIG00000006899) #33	AGER (ENSPTIG00000006921) #34	RNF5 (ENSPTIG00000007005) #35
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762.cc #11	ENSGT00940000162390.p #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000155371.n.a.a
lion	MODERN SPECIES	5	RING1 (ENSPLOG00000009313) #7	HSD17B8 (ENSPLOG00000009241) #8	SLC39A7 (ENSPLOG00000009206) #9	RXRB (ENSPLOG00000009094) #10	COL11A2 (ENSPLOG00000007928) #11	ENSPLOG00000007166 #13	HLA-DPA1 (ENSPLOG00000006949) #12	HLA-DOA (ENSPLOG00000006926) #14	BRD2 (ENSPLOG00000006871) #15	HLA-DMA (ENSPLOG00000006786) #17	HLA-DMB (ENSPLOG00000006753) #18	ENSPLOG00000006735	PSMB9 (ENSPLOG00000006713) #19	TAP1 (ENSPLOG00000006688) #20	PSMB8 (ENSPLOG00000006662) #21	TAP2 (ENSPLOG00000006623) #22	HLA-DOB (ENSPLOG00000006603) #23	ENSPLOG00000006575
leopard	MODERN SPECIES	30	HSD17B8 (ENSPPRG00000008960) #8	SLC39A7 (ENSPPRG00000009227) #9	RXRB (ENSPPRG00000010222) #10	COL11A2 (ENSPPRG00000001194) #11	HLA-DPB1 (ENSPPRG00000002022) #13	HLA-DPA1 (ENSPPRG00000002267) #12	HLA-DOA (ENSPPRG00000002484) #14	ENSPPRG00000002715 #15	ENSPPRG00000003003 #15	ENSPPRG00000003175 #16	HLA-DMA (ENSPPRG00000004582) #17	HLA-DMB (ENSPPRG00000004964) #18	PSMB9 (ENSPPRG00000008776) #19	TAP1 (ENSPPRG00000009806) #20	PSMB8 (ENSPPRG00000010024) #21	TAP2 (ENSPPRG00000010234) #22	HLA-DOB (ENSPPRG00000010507) #23
Cat	DUPLICATION
Cat	MODERN SPECIES	236	ENSFCAG00000046098 #9	ENSFCAG00000050544	ENSFCAG00000042526 #10	ENSFCAG00000046454 #11	ENSFCAG00000047214 #11	ENSFCAG00000041523 #13	ENSFCAG00000012247 #12	ENSFCAG00000009697 #14	ENSFCAG00000009696 #15	ENSFCAG00000041486 #17	ENSFCAG00000040910 #18	ENSFCAG00000051485	ENSFCAG00000030632 #19	ENSFCAG00000042806 #20	ENSFCAG00000023131 #21	ENSFCAG00000035701 #22	ENSFCAG00000041575 #23	ENSFCAG00000046253	ENSFCAG00000029158 #28	BTNL2 (ENSFCAG00000001685) #29	ENSFCAG00000028529	ENSFCAG00000024834	ENSFCAG00000045335	ENSFCAG00000037191	GPSM3 (ENSFCAG00000016212) #32	PBX2 (ENSFCAG00000004530) #33	AGER (ENSFCAG00000004529) #34	RNF5 (ENSFCAG00000004528) #35	AGPAT1 (ENSFCAG00000035621) #36	EGFL8 (ENSFCAG00000022700) #37	PPT2 (ENSFCAG00000004526)
Cat	MODERN SPECIES	236	ENSFCAG00000004010 #7	ENSFCAG00000043560	ENSFCAG00000006984 #9	ENSFCAG00000006981 #10	COL11A2 (ENSFCAG00000004005) #11	ENSFCAG00000041258 #13	ENSFCAG00000044012 #12	ENSFCAG00000042732 #14	ENSFCAG00000042841 #15	ENSFCAG00000009442 #17	ENSFCAG00000045369 #18	ENSFCAG00000050701	ENSFCAG00000044069 #19	ENSFCAG00000042456 #20	ENSFCAG00000043821 #21	ENSFCAG00000045700 #22	ENSFCAG00000009202	ENSFCAG00000040474 #23	ENSFCAG00000041443	ENSFCAG00000052131	ENSFCAG00000053744	DAXX (ENSFCAG00000004020)	ENSFCAG00000049571	ENSFCAG00000043390	ENSFCAG00000029182	ENSFCAG00000028199	ENSFCAG00000051171	ENSFCAG00000052529	ENSFCAG00000041843	VPS52 (ENSFCAG00000004011)	ENSFCAG00000041942 #7
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821.c.a	ENSGT00940000155371.n	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079.d	ENSGT00530000064839 #30	ENSGT00940000162450	ENSGT00940000163287 #31	ENSGT00390000002471 #32	ENSGT00940000160293 #33	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000162892 #25	ENSGT00940000154723.b #24	ENSGT00940000161821.d	ENSGT00940000155371.n	ENSGT00940000160997 #28	ENSGT00940000162484.f #29	ENSGT00940000164957	ENSGT00940000162079.d
Megabat	MODERN SPECIES	3233													PSMB9 (ENSPVAG00000002804) #19	TAP1 (ENSPVAG00000002802) #20	PSMB8 (ENSPVAG00000002800) #21	TAP2 (ENSPVAG00000002794) #22	HLA-DOB (ENSPVAG00000002791) #23
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000162892 #25	ENSGT00940000154723.b #24	ENSGT00940000161821.d	ENSGT00940000155371.n	ENSGT00940000160997 #28	ENSGT00940000162484.f #29	ENSGT00940000164957	ENSGT00940000162079.d
Greater horseshoe bat	MODERN SPECIES	21	ENSRFEG00010014573	VPS52 (ENSRFEG00010014510)	RING1 (ENSRFEG00010014424) #7	HSD17B8 (ENSRFEG00010014277) #8	SLC39A7 (ENSRFEG00010014223) #9	RXRB (ENSRFEG00010014125) #10	COL11A2 (ENSRFEG00010013940) #11	HLA-DPB1 (ENSRFEG00010013529) #13	HLA-DPA1 (ENSRFEG00010013424) #12	HLA-DOA (ENSRFEG00010013359) #14	BRD2 (ENSRFEG00010013276) #15	ENSRFEG00010012948 #17	PSMB9 (ENSRFEG00010012800) #19	TAP1 (ENSRFEG00010012779) #20	PSMB8 (ENSRFEG00010012709) #21	TAP2 (ENSRFEG00010012594) #22	HLA-DOB (ENSRFEG00010012534) #23	ENSRFEG00010012490	ENSRFEG00010012374	ENSRFEG00010010765 #24	ENSRFEG00010010549	HLA-DQB2 (ENSRFEG00010010410) #24	ENSRFEG00010010287	ENSRFEG00010010222	HLA-DRA (ENSRFEG00010010177) #28	ENSRFEG00010010130	BTNL2 (ENSRFEG00010004871) #29	ENSRFEG00010004851	ENSRFEG00010004842	ENSRFEG00010004830	ENSRFEG00010004789
Microbat	MODERN SPECIES	1885										HLA-DMA (ENSMLUG00000005494) #17	HLA-DMB (ENSMLUG00000009907) #18	ENSMLUG00000026627	PSMB9 (ENSMLUG00000013890) #19	TAP1 (ENSMLUG00000013880) #20	PSMB8 (ENSMLUG00000013876) #21	TAP2 (ENSMLUG00000013870) #22
Equus	ANCESTRAL SPECIES	10	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00860000136081 #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000155371.n.g.b	ENSGT00940000155371.n.h	ENSGT00940000154723.b.y #24	ENSGT00940000161821.c.b	ENSGT00940000154723.b.z.a #24	ENSGT00940000161821.c.a	ENSGT00940000155371.n.g.a	ENSGT00940000160997 #28	ENSGT00940000162484 #29	ENSGT00940000164957	ENSGT00940000162079.d	ENSGT00860000135184.d.b.a	ENSGT00980000198488.m.a.a.b.a.a.b.c.b	ENSGT00530000064839 #30
Horse	MODERN SPECIES	12	B3GALT4 (ENSECAG00000052593)	VPS52 (ENSECAG00000019702)	RING1 (ENSECAG00000013736) #7	HSD17B8 (ENSECAG00000058465) #8	SLC39A7 (ENSECAG00000004794) #9	RXRB (ENSECAG00000023041) #10	COL11A2 (ENSECAG00000029028) #11	HLA-DOA (ENSECAG00000006603) #14	BRD2 (ENSECAG00000012089) #15	ENSECAG00000042051 #16	HLA-DMA (ENSECAG00000003669) #17	HLA-DMB (ENSECAG00000021796) #18	TAP1 (ENSECAG00000022610) #20	PSMB8 (ENSECAG00000018887) #21	PSMB9 (ENSECAG00000016898) #19	TAP2 (ENSECAG00000007152) #22	HLA-DOB (ENSECAG00000020976) #23	ENSECAG00000012933	ENSECAG00000020358	ENSECAG00000052533 #24	ENSECAG00000009142	ENSECAG00000017143 #24	Eqca-DQA1 (ENSECAG00000024259)	ENSECAG00000022072	HLA-DRA (ENSECAG00000012660) #28	ENSECAG00000033265	BTNL2 (ENSECAG00000011452) #29	ENSECAG00000016943	ENSECAG00000014398	ENSECAG00000038583	ENSECAG00000056152
Donkey	MODERN SPECIES	28	B3GALT4 (ENSEASG00005035058)	RPS18 (ENSEASG00005020817)	VPS52 (ENSEASG00005020809)	RING1 (ENSEASG00005020805) #7	SLC39A7 (ENSEASG00005020798) #9	RXRB (ENSEASG00005020792) #10	COL11A2 (ENSEASG00005030115) #11	HLA-DOA (ENSEASG00005020773) #14	BRD2 (ENSEASG00005020770) #15	ENSEASG00005032605 #16	HLA-DMA (ENSEASG00005020764) #17	HLA-DMB (ENSEASG00005020759) #18	PSMB9 (ENSEASG00005020754) #19	TAP1 (ENSEASG00005020750) #20	PSMB8 (ENSEASG00005020748) #21	TAP2 (ENSEASG00005020743) #22	ENSEASG00005020739 #23	ENSEASG00005017377	ENSEASG00005033717 #23	ENSEASG00005014836	ENSEASG00005020693	ENSEASG00005031301	HLA-DQB1 (ENSEASG00005012362) #24	ENSEASG00005003380 #24	ENSEASG00005006994	ENSEASG00005023862	ENSEASG00005020694	BTNL2 (ENSEASG00005037724) #29	ENSEASG00005035285	ENSEASG00005037345	ENSEASG00005031262
Atlantogenata	ANCESTRAL SPECIES	3	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498.r #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993 #26	ENSGT00940000155371	ENSGT00940000160997 #28	ENSGT00940000162484 #29
Afrotheria	ANCESTRAL SPECIES	83	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498.r #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000160997.m #28	ENSGT00940000162484 #29
Afrotheria_a	ANCESTRAL SPECIES	84	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498.r #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000160997.m #28	ENSGT00940000162484 #29
Hyrax	MODERN SPECIES	7111													PSMB9 (ENSPCAG00000016827) #19	TAP1 (ENSPCAG00000016767) #20	PSMB8 (ENSPCAG00000016741) #21	TAP2 (ENSPCAG00000016678) #22
Elephant	MODERN SPECIES	14	ENSLAFG00000032173	VPS52 (ENSLAFG00000004472)	RING1 (ENSLAFG00000021706) #7	HSD17B8 (ENSLAFG00000030087) #8	SLC39A7 (ENSLAFG00000002138) #9	RXRB (ENSLAFG00000002141) #10	COL11A2 (ENSLAFG00000009548) #11	ENSLAFG00000029575 #13	HLA-DOA (ENSLAFG00000014863) #14	BRD2 (ENSLAFG00000016104) #15	HLA-DMA (ENSLAFG00000005738) #17	HLA-DMB (ENSLAFG00000004768) #18	PSMB9 (ENSLAFG00000025736) #19	TAP1 (ENSLAFG00000003214) #20	PSMB8 (ENSLAFG00000003213) #21	TAP2 (ENSLAFG00000028298) #22	HLA-DOB (ENSLAFG00000004052) #23	ENSLAFG00000029261 #24	ENSLAFG00000030016 #24	ENSLAFG00000018482 #24	ENSLAFG00000031292	ENSLAFG00000001026 #28	BTNL2 (ENSLAFG00000001025) #29
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	8432													PSMB9 (ENSETEG00000013343) #19	ENSETEG00000013337 #20	PSMB8 (ENSETEG00000013333) #21	ENSETEG00000013330 #22	HLA-DOB (ENSETEG00000013327) #23	ENSETEG00000013324 #22
Tenrec	MODERN SPECIES	8432																ENSETEG00000013324 #22	HLA-DOB (ENSETEG00000013327) #23	ENSETEG00000013330 #22	PSMB8 (ENSETEG00000013333) #21	ENSETEG00000013337 #20	PSMB9 (ENSETEG00000013343) #19
Xenarthra	ANCESTRAL SPECIES	66	ENSGT00390000012691.c.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #13	ENSGT00940000162498.r #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22
Armadillo	MODERN SPECIES	4056	ENSDNOG00000041084	RING1 (ENSDNOG00000019606) #7	SLC39A7 (ENSDNOG00000015430) #9	RXRB (ENSDNOG00000015431) #10	COL11A2 (ENSDNOG00000047004) #11	ENSDNOG00000037384 #13	ENSDNOG00000045287 #13	HLA-DPA1 (ENSDNOG00000043328) #12	HLA-DOA (ENSDNOG00000030617) #14	BRD2 (ENSDNOG00000006186) #15	HLA-DMA (ENSDNOG00000002005) #17	HLA-DMB (ENSDNOG00000045752) #18	PSMB9 (ENSDNOG00000035353) #19	TAP1 (ENSDNOG00000024030) #20	PSMB8 (ENSDNOG00000045248) #21	TAP2 (ENSDNOG00000034243) #22
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00390000008815	ENSGT01100000263519.A.b.a.b	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00980000198488.n.y.b.b	ENSGT00980000198488.n.y.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499.k #22	ENSGT01100000263562.b.a.a.c.b	ENSGT00940000160499.l #22	ENSGT00980000198488.n.y.b.a	ENSGT00950000183127.b.c.a	ENSGT00940000161847.k	ENSGT00940000154723.a.a ##24	ENSGT00940000160997 #28	ENSGT00940000164042.b	ENSGT00940000162498 #12	ENSGT00950000183127.b.c.b	ENSGT00940000162079.g.b	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36	ENSGT00940000162975 #37
Marsupialia_b	ANCESTRAL SPECIES	55												ENSGT00980000198488.n.y.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293.kb #21	ENSGT00940000160499.k #22	ENSGT00980000198488.n.y.b.a	ENSGT01100000263562.b.a.a.c.b
Diprotodontia	ANCESTRAL SPECIES	113												ENSGT00980000198488.n.y.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293.kb #21	ENSGT00940000160499.k #22	ENSGT00980000198488.n.y.b.a	ENSGT01100000263562.b.a.a.c.b
Diprotodontia_a	ANCESTRAL SPECIES	111												ENSGT00980000198488.n.y.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293.kb #21	ENSGT00940000160499.k #22	ENSGT00980000198488.n.y.b.a	ENSGT01100000263562.b.a.a.c.b
Common wonbat	DUPLICATION
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1047	ENSVURG00010015107	RGL2 (ENSVURG00010015079)	PFDN6 (ENSVURG00010015063)	WDR46 (ENSVURG00010015047)	B3GALT4 (ENSVURG00010015041)	RPS18 (ENSVURG00010015031)	VPS52 (ENSVURG00010015001)	RING1 (ENSVURG00010014982) #7	ENSVURG00010014948	RXRB (ENSVURG00010014890) #10	ENSVURG00010014883 #11	BRD2 (ENSVURG00010014869) #15	HLA-DMA (ENSVURG00010014861) #17	HLA-DMB (ENSVURG00010014847) #18	ENSVURG00010014320 #20	ENSVURG00010014277 #22	OSCAR (ENSVURG00010014253)	ENSVURG00010014250	ENSVURG00010012584	ENSVURG00010012508 #19	ENSVURG00010012252 #20	PSMB8 (ENSVURG00010012199) #21	ENSVURG00010006738	ENSVURG00010006484	ENSVURG00010006462 #22	ENSVURG00010006448	ENSVURG00010006216 #22	ENSVURG00010006194 ##24	ENSVURG00010006184	ENSVURG00010006135	ENSVURG00010006097
Common wonbat	MODERN SPECIES	1047	AGPAT1 (ENSVURG00010005367) #36	RNF5 (ENSVURG00010005389) #35	AGER (ENSVURG00010005404) #34	PBX2 (ENSVURG00010005430) #33	ENSVURG00010005483	ENSVURG00010005524	ENSVURG00010005536	ENSVURG00010005576 #12	ENSVURG00010006002	HLA-DRA (ENSVURG00010006059) #28	ENSVURG00010006071	ENSVURG00010006097	ENSVURG00010006135	ENSVURG00010006184	ENSVURG00010006194 ##24	ENSVURG00010006216 #22	ENSVURG00010006448	ENSVURG00010006462 #22	ENSVURG00010006484	ENSVURG00010006738	PSMB8 (ENSVURG00010012199) #21	ENSVURG00010012252 #20	ENSVURG00010012508 #19	ENSVURG00010012584	ENSVURG00010014250	OSCAR (ENSVURG00010014253)	ENSVURG00010014277 #22	ENSVURG00010014320 #20	HLA-DMB (ENSVURG00010014847) #18	HLA-DMA (ENSVURG00010014861) #17	BRD2 (ENSVURG00010014869) #15
Common wonbat	MODERN SPECIES	1047	RXRB (ENSVURG00010014890) #10	ENSVURG00010014883 #11	BRD2 (ENSVURG00010014869) #15	HLA-DMA (ENSVURG00010014861) #17	HLA-DMB (ENSVURG00010014847) #18	ENSVURG00010014320 #20	ENSVURG00010014277 #22	OSCAR (ENSVURG00010014253)	ENSVURG00010014250	ENSVURG00010012584	ENSVURG00010012508 #19	ENSVURG00010012252 #20	PSMB8 (ENSVURG00010012199) #21	ENSVURG00010006738	ENSVURG00010006484	ENSVURG00010006462 #22	ENSVURG00010006448	ENSVURG00010006216 #22	ENSVURG00010006194 ##24	ENSVURG00010006184	ENSVURG00010006135	ENSVURG00010006097	ENSVURG00010006071	HLA-DRA (ENSVURG00010006059) #28	ENSVURG00010006002	ENSVURG00010005576 #12	ENSVURG00010005536	ENSVURG00010005524	ENSVURG00010005483	PBX2 (ENSVURG00010005430) #33	AGER (ENSVURG00010005404) #34
koala	DUPLICATION
koala	MODERN SPECIES	254			ENSPCIG00000036920	RING1 (ENSPCIG00000002578) #7	HSD17B8 (ENSPCIG00000002203) #8	ENSPCIG00000002180	RXRB (ENSPCIG00000002153) #10	COL11A2 (ENSPCIG00000031838) #11	BRD2 (ENSPCIG00000002017) #15	HLA-DMA (ENSPCIG00000001972) #17	Phci-DMB (ENSPCIG00000019944) #18	ENSPCIG00000036230	PSMB9 (ENSPCIG00000022552) #19	ENSPCIG00000034298 #20	ENSPCIG00000008486 #21	ENSPCIG00000001956 #22	ENSPCIG00000001943	ENSPCIG00000034822	ENSPCIG00000005091 #20	ENSPCIG00000001868 #21	ENSPCIG00000001804	ENSPCIG00000001719	ENSPCIG00000009007 #22	ENSPCIG00000008629 #20	ENSPCIG00000005151	ENSPCIG00000008365 ##24	Phci-DBA (ENSPCIG00000018833)	Phci-DAA (ENSPCIG00000018830) #28	ENSPCIG00000018822	ENSPCIG00000018816 #13	ENSPCIG00000018813
koala	MODERN SPECIES	254	COL11A2 (ENSPCIG00000031838) #11	BRD2 (ENSPCIG00000002017) #15	HLA-DMA (ENSPCIG00000001972) #17	Phci-DMB (ENSPCIG00000019944) #18	ENSPCIG00000036230	PSMB9 (ENSPCIG00000022552) #19	ENSPCIG00000034298 #20	ENSPCIG00000008486 #21	ENSPCIG00000001956 #22	ENSPCIG00000001943	ENSPCIG00000034822	ENSPCIG00000005091 #20	ENSPCIG00000001868 #21	ENSPCIG00000001804	ENSPCIG00000001719	ENSPCIG00000009007 #22	ENSPCIG00000008629 #20	ENSPCIG00000005151	ENSPCIG00000008365 ##24	Phci-DBA (ENSPCIG00000018833)	Phci-DAA (ENSPCIG00000018830) #28	ENSPCIG00000018822	ENSPCIG00000018816 #13	ENSPCIG00000018813	ENSPCIG00000018812	ENSPCIG00000018808	GPSM3 (ENSPCIG00000018807) #32	PBX2 (ENSPCIG00000033599) #33	AGER (ENSPCIG00000018805) #34	RNF5 (ENSPCIG00000018804) #35	AGPAT1 (ENSPCIG00000018803) #36
Wallaby	MODERN SPECIES	10054													ENSMEUG00000007390 #19	TAP1 (ENSMEUG00000007342) #20	PSMB8 (ENSMEUG00000007328) #21	ENSMEUG00000007297 #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000012955	MAPK14 (ENSSHAG00000001726)	MAPK13 (ENSSHAG00000005652)	BRPF3 (ENSSHAG00000006679)	PNPLA1 (ENSSHAG00000026837)	ETV7 (ENSSHAG00000008985)	KCTD20 (ENSSHAG00000009892)	STK38 (ENSSHAG00000010192)	SRSF3 (ENSSHAG00000028024)	CDKN1A (ENSSHAG00000027220)	ENSSHAG00000030398	CPNE5 (ENSSHAG00000012120)	PPIL1 (ENSSHAG00000029952)	ENSSHAG00000013471	ENSSHAG00000013929	ENSSHAG00000001057 #22	ENSSHAG00000022544	ENSSHAG00000023399 #19	ENSSHAG00000024693 #20	ENSSHAG00000030279 #21	ENSSHAG00000029854	ENSSHAG00000023605	ENSSHAG00000024141	ENSSHAG00000024812	ENSSHAG00000014096	FGD2 (ENSSHAG00000014314)	ENSSHAG00000031469	ENSSHAG00000026123	ENSSHAG00000025311	TBC1D22B (ENSSHAG00000015386)	RNF8 (ENSSHAG00000015696)
Opossum	DUPLICATION
Opossum	MODERN SPECIES	1	RING1 (ENSMODG00000014169) #7	HSD17B8 (ENSMODG00000014232) #8	ENSMODG00000014239	RXRB (ENSMODG00000014249) #10	BRD2 (ENSMODG00000014295) #15	ENSMODG00000029544 #17	HLA-DMB (ENSMODG00000014310) #18	ENSMODG00000039629	MODO-UK (ENSMODG00000014336)	ENSMODG00000050241	PSMB9 (ENSMODG00000046870) #19	TAP1 (ENSMODG00000014352) #20	PSMB8 (ENSMODG00000014366) #21	ENSMODG00000038708	ENSMODG00000044001	ENSMODG00000010560 #22	ENSMODG00000047889	MHC-I (ENSMODG00000042965)	ENSMODG00000043833 #22	OSCAR (ENSMODG00000010599)	ENSMODG00000046464	ENSMODG00000043369	ENSMODG00000025709	ENSMODG00000014539 #22	ENSMODG00000037355	MODO-UE (ENSMODG00000014624)	MODO-UM (ENSMODG00000039032)	ENSMODG00000014687	ENSMODG00000014692	ENSMODG00000014713	HLA-DRA (ENSMODG00000014722) #28
Opossum	MODERN SPECIES	1	RXRB (ENSMODG00000014249) #10	BRD2 (ENSMODG00000014295) #15	ENSMODG00000029544 #17	HLA-DMB (ENSMODG00000014310) #18	ENSMODG00000039629	MODO-UK (ENSMODG00000014336)	ENSMODG00000050241	PSMB9 (ENSMODG00000046870) #19	TAP1 (ENSMODG00000014352) #20	PSMB8 (ENSMODG00000014366) #21	ENSMODG00000038708	ENSMODG00000044001	ENSMODG00000010560 #22	ENSMODG00000047889	MHC-I (ENSMODG00000042965)	ENSMODG00000043833 #22	OSCAR (ENSMODG00000010599)	ENSMODG00000046464	ENSMODG00000043369	ENSMODG00000025709	ENSMODG00000014539 #22	ENSMODG00000037355	MODO-UE (ENSMODG00000014624)	MODO-UM (ENSMODG00000039032)	ENSMODG00000014687	ENSMODG00000014692	ENSMODG00000014713	HLA-DRA (ENSMODG00000014722) #28	ENSMODG00000014728	ENSMODG00000036691 #12	ENSMODG00000025678
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000153385.b.a.b #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00980000198488.n.y.b.b	ENSGT00980000198488.n.y.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499.k #22	ENSGT01100000263562.b.a.a.c.b	ENSGT00940000160499.l #22	ENSGT00980000198488.n.y.b.a	ENSGT00950000183127.b.c.a	ENSGT00940000161847.k	ENSGT00940000154723.a.a ##24	ENSGT00940000160997 #28	ENSGT00940000164042.b	ENSGT00940000162498 #12	ENSGT00950000183127.b.c.b	ENSGT00940000162079.g.b	ENSGT00890000139566 #34	ENSGT00390000014107.a.b #35	ENSGT00390000008726.h.b #36	ENSGT00940000162975 #37	ENSGT00940000155779.a.b	ENSGT00940000162382
Opossum	MODERN SPECIES	1	MODO-UK (ENSMODG00000014336)	ENSMODG00000050241	PSMB9 (ENSMODG00000046870) #19	TAP1 (ENSMODG00000014352) #20	PSMB8 (ENSMODG00000014366) #21	ENSMODG00000038708	ENSMODG00000044001	ENSMODG00000010560 #22	ENSMODG00000047889	MHC-I (ENSMODG00000042965)	ENSMODG00000043833 #22	OSCAR (ENSMODG00000010599)	ENSMODG00000046464	ENSMODG00000043369	ENSMODG00000025709	ENSMODG00000014539 #22	ENSMODG00000037355	MODO-UE (ENSMODG00000014624)	MODO-UM (ENSMODG00000039032)	ENSMODG00000014687	ENSMODG00000014692	ENSMODG00000014713	HLA-DRA (ENSMODG00000014722) #28	ENSMODG00000014728	ENSMODG00000036691 #12	ENSMODG00000025678	ENSMODG00000014767	ENSMODG00000039084	ENSMODG00000050430	ENSMODG00000046754	ENSMODG00000046587
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00940000160499.l #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00940000160499.l #22
Wallaby	MODERN SPECIES	12577																ENSMEUG00000013752 #22
Platypus	MODERN SPECIES	86	B3GALT4 (ENSOANG00000043293)	ENSOANG00000049916	PFDN6 (ENSOANG00000046144)	RGL2 (ENSOANG00000047778)	ENSOANG00000036542	ENSOANG00000042230	ENSOANG00000043668	BRD2 (ENSOANG00000040477) #15	ENSOANG00000045669 #17	ENSOANG00000046093 #18	ENSOANG00000003398	ENSOANG00000044768	PSMB9 (ENSOANG00000041248) #19	TAP1 (ENSOANG00000021021) #20	PSMB8 (ENSOANG00000014541) #21	TAP2 (ENSOANG00000004283) #22	ENSOANG00000005224	ENSOANG00000037190	ENSOANG00000015643 #28	ENSOANG00000046016	ENSOANG00000009112	ORNANAV1R3015 (ENSOANG00000007358)	ENSOANG00000048207	ORNANAV1R3014 (ENSOANG00000040008)	ORNANAV1R3013 (ENSOANG00000007354)	ORNANAV1R3012 (ENSOANG00000042081)	ENSOANG00000046629	ORNANAV1R3121 (ENSOANG00000036357)	ORNANAV1R3199 (ENSOANG00000046376)	ENSOANG00000007846	ORNANAV1R3119 (ENSOANG00000048918)