Amniota ANCESTRAL SPECIES 74 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00950000183127.b ENSGT00940000160997 #28 ENSGT00940000155371 ENSGT00940000161847 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000159023 #20 Mammalia ANCESTRAL SPECIES 89 ENSGT00390000012691.d ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00980000198488.n ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000155371 ENSGT00940000160997 #28 ENSGT00950000183127.b ENSGT00940000161847 ENSGT00940000154723 #24 Theria ANCESTRAL SPECIES 4 ENSGT00940000161798 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00980000198488.n ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 ENSGT00940000162975 #37 ENSGT00940000155779.a.b ENSGT00940000162382 ENSGT00920000149187 ENSGT00940000160798 ENSGT00940000155565 ENSGT00940000158338 ENSGT01030000235045 ENSGT00940000155739 ENSGT00390000018295 ENSGT00390000006425 ENSGT00940000158255 Eutheria ANCESTRAL SPECIES 9 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 Boreoeutheria ANCESTRAL SPECIES 7 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993 #26 ENSGT00940000155371 ENSGT00940000161847 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 Euarchontoglires ANCESTRAL SPECIES 7 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000161821 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000154993 #26 ENSGT00940000155371 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 Primates ANCESTRAL SPECIES 5 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000154993 #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 Haplorrhini ANCESTRAL SPECIES 2 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000154993 #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00530000064839 #30 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 ENSGT00940000162975 #37 ENSGT00940000155779.a.b Simiiformes ANCESTRAL SPECIES 5 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000162892.a.a ##25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00530000064839 #30 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 ENSGT00940000162975 #37 ENSGT00940000155779.a.b Catarrhini ANCESTRAL SPECIES 5 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n #24 ENSGT00940000162892.a.b #25 ENSGT00940000154723.b.m.a ##24 ENSGT00940000162892.a.a ##25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b #26 ENSGT00940000154993.m.a.a #27 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00530000064839 #30 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 Hominoidea ANCESTRAL SPECIES 4 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n #24 ENSGT00940000162892.a.b #25 ENSGT00940000154723.b.m.a ##24 ENSGT00940000162892.a.a ##25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b #26 ENSGT00940000154993.m.a.a #27 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00530000064839 #30 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 Hominidae ANCESTRAL SPECIES 5 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n #24 ENSGT00940000162892.a.b #25 ENSGT00940000154723.b.m.a ##24 ENSGT00940000162892.a.a ##25 ENSGT00940000154993.m.a.a #27 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00530000064839 #30 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 Orangutan MODERN SPECIES 19 RING1 (ENSPPYG00000017242) #7 HSD17B8 (ENSPPYG00000017241) #8 SLC39A7 (ENSPPYG00000017240) #9 RXRB (ENSPPYG00000017239) #10 COL11A2 (ENSPPYG00000017238) #11 HLA-DPA1 (ENSPPYG00000017229) #12 ENSPPYG00000029571 #13 HLA-DOA (ENSPPYG00000016495) #14 BRD2 (ENSPPYG00000017228) #15 ENSPPYG00000031820 #16 ENSPPYG00000017227 #17 HLA-DMB (ENSPPYG00000017226) #18 PSMB9 (ENSPPYG00000017225) #19 TAP1 (ENSPPYG00000017224) #20 PSMB8 (ENSPPYG00000017223) #21 TAP2 (ENSPPYG00000017222) #22 HLA-DOB (ENSPPYG00000017221) #23 HLA-DQB2 (ENSPPYG00000017220) #24 HLA-DQA2 (ENSPPYG00000017219) #25 ENSPPYG00000017216 #26 HLA-DRB1 (ENSPPYG00000016490) #27 HLA-DRA (ENSPPYG00000017234) #28 BTNL2 (ENSPPYG00000017215) #29 TSBP1 (ENSPPYG00000016489) #30 NOTCH4 (ENSPPYG00000016488) #31 GPSM3 (ENSPPYG00000016487) #32 PBX2 (ENSPPYG00000016486) #33 AGER (ENSPPYG00000016485) #34 RNF5 (ENSPPYG00000016484) #35 AGPAT1 (ENSPPYG00000016483) #36 EGFL8 (ENSPPYG00000041054) #37 Homo/Pan/Gorilla group ANCESTRAL SPECIES 4 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n #24 ENSGT00940000162892.a.b #25 ENSGT00940000154723.b.m.a ##24 ENSGT00940000162892.a.a ##25 ENSGT00940000154993.m.a.a #27 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00530000064839 #30 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 Gorilla MODERN SPECIES 19 RING1 (ENSGGOG00000009842) #7 HSD17B8 (ENSGGOG00000009838) #8 SLC39A7 (ENSGGOG00000009830) #9 RXRB (ENSGGOG00000009823) #10 COL11A2 (ENSGGOG00000009799) #11 HLA-DPB1 (ENSGGOG00000013630) #13 HLA-DPA1 (ENSGGOG00000013625) #12 HLA-DOA (ENSGGOG00000010653) #14 ENSGGOG00000005838 #16 BRD2 (ENSGGOG00000043461) #15 ENSGGOG00000005835 #17 HLA-DMB (ENSGGOG00000022404) #18 PSMB9 (ENSGGOG00000010965) #19 TAP1 (ENSGGOG00000010958) #20 PSMB8 (ENSGGOG00000010953) #21 TAP2 (ENSGGOG00000010941) #22 HLA-DOB (ENSGGOG00000043194) #23 HLA-DQB2 (ENSGGOG00000014413) #24 ENSGGOG00000037744 #25 HLA-DQB1 (ENSGGOG00000004252) ##24 HLA-DQA1 (ENSGGOG00000013538) ##25 ENSGGOG00000000700 #26 HLA-DRB5 (ENSGGOG00000037929) ##26 HLA-DRA (ENSGGOG00000009861) #28 BTNL2 (ENSGGOG00000009855) #29 TSBP1 (ENSGGOG00000040681) #30 NOTCH4 (ENSGGOG00000002332) #31 GPSM3 (ENSGGOG00000002329) #32 PBX2 (ENSGGOG00000002325) #33 AGER (ENSGGOG00000002323) #34 RNF5 (ENSGGOG00000002320) #35 Homo/Pan group ANCESTRAL SPECIES 5 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n #24 ENSGT00940000162892.a.b #25 ENSGT00940000154723.b.m.a ##24 ENSGT00940000162892.a.a ##25 ENSGT00940000154993.m.a.a #27 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00530000064839 #30 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 Pan ANCESTRAL SPECIES 5 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.b.a.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n #24 ENSGT00940000162892.a.b #25 ENSGT00940000154723.b.m.a ##24 ENSGT00940000162892.a.a ##25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00530000064839 #30 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b.w #35 Chimpanzee MODERN SPECIES 19 RING1 (ENSPTRG00000018037) #7 HSD17B8 (ENSPTRG00000018036) #8 SLC39A7 (ENSPTRG00000018035) #9 RXRB (ENSPTRG00000018034) #10 COL11A2 (ENSPTRG00000018033) #11 HLA-DPB1 (ENSPTRG00000018030) #13 HLA-DPA1 (ENSPTRG00000018029) #12 HLA-DOA (ENSPTRG00000018028) #14 ENSPTRG00000018027 #16 BRD2 (ENSPTRG00000042676) #15 ENSPTRG00000018026 #17 PATR-DMB (ENSPTRG00000018025) #18 PSMB9 (ENSPTRG00000018024) #19 TAP1 (ENSPTRG00000018023) #20 PSMB8 (ENSPTRG00000018022) #21 TAP2 (ENSPTRG00000018021) #22 PATR-DOB (ENSPTRG00000018020) #23 HLA-DQB2 (ENSPTRG00000023404) #24 HLA-DQA2 (ENSPTRG00000034186) #25 HLA-DQB1 (ENSPTRG00000018018) ##24 HLA-DQA1 (ENSPTRG00000018017) ##25 PATR-DQB1 (ENSPTRG00000018001) #27 ENSPTRG00000051243 #26 PATR-DRB5 (ENSPTRG00000023735) ##26 PATR-DRA (ENSPTRG00000018016) #28 BTNL2 (ENSPTRG00000043663) #29 ENSPTRG00000044399 TSBP1 (ENSPTRG00000018014) #30 NOTCH4 (ENSPTRG00000034379) #31 GPSM3 (ENSPTRG00000023968) #32 PBX2 (ENSPTRG00000018012) #33 Bonobo MODERN SPECIES 19 HSD17B8 (ENSPPAG00000032286) #8 SLC39A7 (ENSPPAG00000028225) #9 RXRB (ENSPPAG00000038590) #10 COL11A2 (ENSPPAG00000013099) #11 HLA-DPB1 (ENSPPAG00000041449) #13 HLA-DPA1 (ENSPPAG00000031863) #12 HLA-DOA (ENSPPAG00000036361) #14 BRD2 (ENSPPAG00000016843) #15 ENSPPAG00000027710 #16 HLA-DMA (ENSPPAG00000041639) #17 HLA-DMB (ENSPPAG00000037856) #18 ENSPPAG00000033020 PSMB9 (ENSPPAG00000038623) #19 TAP1 (ENSPPAG00000029436) #20 PSMB8 (ENSPPAG00000042377) #21 TAP2 (ENSPPAG00000033938) #22 HLA-DOB (ENSPPAG00000027428) #23 HLA-DQB2 (ENSPPAG00000041341) #24 HLA-DQA2 (ENSPPAG00000038014) #25 HLA-DQB1 (ENSPPAG00000041275) ##24 ENSPPAG00000019881 ##25 ENSPPAG00000039594 ##26 ENSPPAG00000036652 #26 ENSPPAG00000029790 #26 HLA-DRA (ENSPPAG00000041818) #28 ENSPPAG00000038384 #29 ENSPPAG00000034948 #30 NOTCH4 (ENSPPAG00000030396) #31 GPSM3 (ENSPPAG00000035669) #32 PBX2 (ENSPPAG00000039908) #33 AGER (ENSPPAG00000028489) #34 Human MODERN SPECIES 18 RING1 (ENSG00000204227) #7 HSD17B8 (ENSG00000204228) #8 SLC39A7 (ENSG00000112473) #9 RXRB (ENSG00000204231) #10 COL11A2 (ENSG00000204248) #11 HLA-DPB1 (ENSG00000223865) #13 HLA-DPA1 (ENSG00000231389) #12 HLA-DOA (ENSG00000204252) #14 BRD2 (ENSG00000204256) #15 HLA-DMA (ENSG00000204257) #17 ENSG00000248993 HLA-DMB (ENSG00000242574) #18 TAP1 (ENSG00000168394) #20 PSMB9 (ENSG00000240065) #19 PSMB8 (ENSG00000204264) #21 TAP2 (ENSG00000204267) #22 ENSG00000250264 HLA-DOB (ENSG00000241106) #23 HLA-DQB2 (ENSG00000232629) #24 HLA-DQA2 (ENSG00000237541) #25 HLA-DQB1 (ENSG00000179344) ##24 HLA-DQA1 (ENSG00000196735) ##25 HLA-DRB1 (ENSG00000196126) #27 HLA-DRB5 (ENSG00000198502) ##26 HLA-DRA (ENSG00000204287) #28 BTNL2 (ENSG00000204290) #29 TSBP1 (ENSG00000204296) #30 NOTCH4 (ENSG00000204301) #31 GPSM3 (ENSG00000213654) #32 PBX2 (ENSG00000204304) #33 AGER (ENSG00000204305) #34 Gibbon MODERN SPECIES 10 HSD17B8 (ENSNLEG00000006824) #8 SLC39A7 (ENSNLEG00000006815) #9 RXRB (ENSNLEG00000006809) #10 ENSNLEG00000030023 #11 HLA-DPB1 (ENSNLEG00000006801) #13 HLA-DPA1 (ENSNLEG00000034417) #12 ENSNLEG00000031675 #14 BRD2 (ENSNLEG00000006782) #15 ENSNLEG00000032110 #16 HLA-DMA (ENSNLEG00000006775) #17 HLA-DMB (ENSNLEG00000006770) #18 ENSNLEG00000032895 PSMB9 (ENSNLEG00000006757) #19 TAP1 (ENSNLEG00000006738) #20 PSMB8 (ENSNLEG00000006733) #21 TAP2 (ENSNLEG00000006714) #22 HLA-DOB (ENSNLEG00000027543) #23 HLA-DQB2 (ENSNLEG00000006713) #24 HLA-DQA2 (ENSNLEG00000027015) #25 HLA-DQB1 (ENSNLEG00000006693) ##24 HLA-DQA1 (ENSNLEG00000032515) ##25 ENSNLEG00000032832 #26 HLA-DRA (ENSNLEG00000006686) #28 BTNL2 (ENSNLEG00000006679) #29 ENSNLEG00000006667 #30 ENSNLEG00000006638 GPSM3 (ENSNLEG00000033153) #32 PBX2 (ENSNLEG00000006632) #33 AGER (ENSNLEG00000006604) #34 RNF5 (ENSNLEG00000027395) #35 AGPAT1 (ENSNLEG00000006594) #36 Cercopithecidae ANCESTRAL SPECIES 4 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.m.a ##24 ENSGT00940000162892.a.a.b ##25 ENSGT00940000154723.b.m.b ##24 ENSGT00940000162892.a.a.a ##25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b #26 ENSGT00940000154993.m.a.a #27 ENSGT00940000160997 #28 ENSGT00530000064839 #30 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 Cercopithecinae ANCESTRAL SPECIES 6 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b.qc.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.m.a ##24 ENSGT00940000162892.a.a.b ##25 ENSGT00940000154993.m.a.a.a #27 ENSGT00940000154723.b.m.b ##24 ENSGT00940000162892.a.a.a ##25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.a.a.b.a.b #27 ENSGT00940000154993.m.b #26 ENSGT00940000154993.m.a.a.b.b #27 ENSGT00940000160997 #28 ENSGT00530000064839 #30 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 Cercopithecinae_a ANCESTRAL SPECIES 6 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b.qc.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.m.a ##24 ENSGT00940000162892.a.a.b ##25 ENSGT00940000154993.m.a.a.a #27 ENSGT00940000154723.b.m.b ##24 ENSGT00940000162892.a.a.a ##25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b.a.b #26 ENSGT00940000154993.m.a.a.b.b #27 ENSGT00940000160997 #28 ENSGT00530000064839 #30 ENSGT00950000183123.h.b ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 Macaca ANCESTRAL SPECIES 9 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498.k #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b.qc.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.m.a ##24 ENSGT00940000162892.a.a.b ##25 ENSGT00940000154993.m.a.a.a #27 ENSGT00940000154993.m.b.a.b #26 ENSGT00940000154993.m.a.a.b.b #27 ENSGT00940000160997 #28 ENSGT00530000064839 #30 ENSGT00950000183123.h.b ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 Macaca_a ANCESTRAL SPECIES 9 ENSGT00390000012691.c.b.m.b ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160076 #9 ENSGT00940000160668 #8 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162498.k #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b.qc.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154993.m.a.b ##26 ENSGT00940000160997 #28 ENSGT00530000064839 #30 ENSGT00950000183123.h.b ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 ENSGT00940000162975 #37 ENSGT00940000155779.a.b ENSGT00940000162382 ENSGT00920000149187 Crab-eating macaque MODERN SPECIES 14 WDR46 (ENSMFAG00000000475) B3GALT4 (ENSMFAG00000041942) RPS18 (ENSMFAG00000032199) COL11A2 (ENSMFAG00000017491) #11 RING1 (ENSMFAG00000002610) #7 SLC39A7 (ENSMFAG00000038848) #9 HSD17B8 (ENSMFAG00000037332) #8 RXRB (ENSMFAG00000003583) #10 HLA-DOA (ENSMFAG00000058905) #14 BRD2 (ENSMFAG00000037520) #15 ENSMFAG00000060572 #16 HLA-DMA (ENSMFAG00000042109) #17 HLA-DMB (ENSMFAG00000004018) #18 PSMB9 (ENSMFAG00000038128) #19 TAP1 (ENSMFAG00000041369) #20 TAP2 (ENSMFAG00000037139) #22 HLA-DOB (ENSMFAG00000003652) #23 HLA-DQA1 (ENSMFAG00000002949) ##25 ENSMFAG00000054107 HLA-DRB5 (ENSMFAG00000000676) ##26 ENSMFAG00000058962 ##26 HLA-DRA (ENSMFAG00000032157) #28 ENSMFAG00000033140 #30 ENSMFAG00000049929 ENSMFAG00000033054 #31 RNF5 (ENSMFAG00000033282) #35 ENSMFAG00000059430 GPSM3 (ENSMFAG00000044173) #32 PBX2 (ENSMFAG00000045367) #33 AGER (ENSMFAG00000038314) #34 AGPAT1 (ENSMFAG00000042426) #36 Rhesus MODERN SPECIES 14 VPS52 (ENSMMUG00000003864) ENSMMUG00000003867 RING1 (ENSMMUG00000003863) #7 SLC39A7 (ENSMMUG00000003859) #9 HSD17B8 (ENSMMUG00000003861) #8 RXRB (ENSMMUG00000003858) #10 COL11A2 (ENSMMUG00000003850) #11 ENSMMUG00000019371 #12 ENSMMUG00000041095 MAMU-DOA (ENSMMUG00000015734) #14 BRD2 (ENSMMUG00000023138) #15 MAMU-DMB (ENSMMUG00000022626) #18 ENSMMUG00000063291 PSMB9 (ENSMMUG00000011304) #19 PSMB8 (ENSMMUG00000011301) #20 MAMU-DOB (ENSMMUG00000011293) #22 ENSMMUG00000054826 MAMU-DRB1 (ENSMMUG00000029799) ##26 MAMU-DRA (ENSMMUG00000039082) #28 TSBP1 (ENSMMUG00000018425) #30 ENSMMUG00000029402 NOTCH4 (ENSMMUG00000018461) #31 GPSM3 (ENSMMUG00000018459) #32 PBX2 (ENSMMUG00000018456) #33 AGER (ENSMMUG00000018442) #34 RNF5 (ENSMMUG00000018438) #35 AGPAT1 (ENSMMUG00000018434) #36 EGFL8 (ENSMMUG00000018432) PRRT1 (ENSMMUG00000016647) FKBPL (ENSMMUG00000015230) ATF6B (ENSMMUG00000015229) Pig-tailed macaque MODERN SPECIES 528 RXRB (ENSMNEG00000034252) #10 COL11A2 (ENSMNEG00000022236) #11 ENSMNEG00000010287 #13 HLA-DPB1 (ENSMNEG00000029725) #13 HLA-DPA1 (ENSMNEG00000040889) #12 HLA-DOA (ENSMNEG00000008508) #14 BRD2 (ENSMNEG00000030743) #15 ENSMNEG00000039758 #16 HLA-DMA (ENSMNEG00000032904) #17 HLA-DMB (ENSMNEG00000044507) #18 ENSMNEG00000035658 ENSMNEG00000036723 PSMB9 (ENSMNEG00000038721) #19 TAP1 (ENSMNEG00000041518) #20 PSMB8 (ENSMNEG00000044942) #21 TAP2 (ENSMNEG00000041413) #22 HLA-DOB (ENSMNEG00000043598) #23 HLA-DQB1 (ENSMNEG00000027969) ##24 HLA-DQA1 (ENSMNEG00000038603) ##25 ENSMNEG00000044119 #27 ENSMNEG00000018617 ENSMNEG00000020869 ##26 Cercopithecinae_b ANCESTRAL SPECIES 18 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498.m #12 ENSGT00940000162498.n #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b.qc.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353.h #23 ENSGT00940000154723.b.m.a ##24 ENSGT00940000162892.a.a.b ##25 ENSGT00940000155046.t ENSGT00390000015391 ENSGT00940000153251.b.a ENSGT00530000064866 ENSGT00390000013322 ENSGT00730000111474 ENSGT00390000010291 ENSGT00960000186815 ENSGT00940000164570 ENSGT00940000164618 ENSGT00390000016847 ENSGT00390000011767 Olive baboon MODERN SPECIES 16 RING1 (ENSPANG00000023635) #7 HSD17B8 (ENSPANG00000023634) #8 SLC39A7 (ENSPANG00000023633) #9 RXRB (ENSPANG00000018527) #10 COL11A2 (ENSPANG00000009194) #11 HLA-DPB1 (ENSPANG00000005764) #13 HLA-DPA1 (ENSPANG00000018967) #12 HLA-DOA (ENSPANG00000031879) #14 BRD2 (ENSPANG00000019626) #15 ENSPANG00000035618 #16 HLA-DMA (ENSPANG00000026492) #17 HLA-DMB (ENSPANG00000019593) #18 PSMB9 (ENSPANG00000033974) #19 TAP1 (ENSPANG00000024178) #20 PSMB8 (ENSPANG00000016588) #21 TAP2 (ENSPANG00000015103) #22 HLA-DOB (ENSPANG00000016388) #23 ENSPANG00000044498 ENSPANG00000007627 TCF19 (ENSPANG00000024035) CCHCR1 (ENSPANG00000017010) ENSPANG00000049186 PSORS1C2 (ENSPANG00000024487) CDSN (ENSPANG00000047914) C6orf15 (ENSPANG00000011097) ENSPANG00000031147 ENSPANG00000009406 SFTA2 (ENSPANG00000030986) VARS2 (ENSPANG00000018481) GTF2H4 (ENSPANG00000026494) DDR1 (ENSPANG00000024488) Cercopithecinae_d ANCESTRAL SPECIES 197 ENSGT00940000162390 #13 ENSGT00940000162498.n #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b.qc.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353.h #23 ENSGT00940000154723.b.m.a ##24 ENSGT00940000162892.a.a.b ##25 Drill MODERN SPECIES 1605 ENSMLEG00000035946 #12 HLA-DOA (ENSMLEG00000037836) #14 ENSMLEG00000042296 #15 ENSMLEG00000035779 #16 HLA-DMA (ENSMLEG00000039758) #17 HLA-DMB (ENSMLEG00000032921) #18 ENSMLEG00000033307 PSMB9 (ENSMLEG00000009919) #19 TAP1 (ENSMLEG00000042023) #20 PSMB8 (ENSMLEG00000028732) #21 TAP2 (ENSMLEG00000040111) #22 HLA-DOB (ENSMLEG00000044332) #23 Sooty mangabey MODERN SPECIES 451 HLA-DPB1 (ENSCATG00000038170) #13 ENSCATG00000024393 #12 HLA-DOA (ENSCATG00000035917) #14 ENSCATG00000034965 #15 ENSCATG00000037729 #16 HLA-DMA (ENSCATG00000030669) #17 HLA-DMB (ENSCATG00000024024) #18 ENSCATG00000037243 PSMB9 (ENSCATG00000041856) #19 TAP1 (ENSCATG00000033980) #20 PSMB8 (ENSCATG00000024878) #21 TAP2 (ENSCATG00000038838) #22 ENSCATG00000036138 #23 HLA-DQB1 (ENSCATG00000030073) ##24 HLA-DQA1 (ENSCATG00000012156) ##25 Rhinopithecus ANCESTRAL SPECIES 177 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b.nc #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.n #24 ENSGT00940000154723.b.m.b ##24 ENSGT00940000162892.a.a.a ##25 ENSGT00940000154993.m.a.b ##26 ENSGT00940000154993.m.b #26 ENSGT00940000154993.m.a.a #27 ENSGT00940000160997 #28 ENSGT00530000064839 #30 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 Golden snub-nosed monkey MODERN SPECIES 1416 HLA-DOA (ENSRROG00000000054) #14 ENSRROG00000012557 #15 ENSRROG00000034857 #16 HLA-DMA (ENSRROG00000037828) #17 HLA-DMB (ENSRROG00000039771) #18 ENSRROG00000012955 PSMB9 (ENSRROG00000005028) #19 TAP1 (ENSRROG00000021353) #20 PSMB8 (ENSRROG00000019326) #21 TAP2 (ENSRROG00000033497) #22 Black snub-nosed monkey MODERN SPECIES 1396 HLA-DOA (ENSRBIG00000041291) #14 ENSRBIG00000044329 #15 ENSRBIG00000033102 #16 HLA-DMA (ENSRBIG00000027897) #17 HLA-DMB (ENSRBIG00000031730) #18 ENSRBIG00000031206 PSMB9 (ENSRBIG00000042419) #19 TAP1 (ENSRBIG00000038729) #20 PSMB8 (ENSRBIG00000032621) #21 TAP2 (ENSRBIG00000042752) #22 HLA-DOB (ENSRBIG00000039119) #23 ENSRBIG00000031872 ##24 HLA-DQA1 (ENSRBIG00000031838) ##25 Platyrrhini ANCESTRAL SPECIES 2 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b.lc #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00390000004757.`b.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.l.b #24 ENSGT00940000162892.a.a.d ##25 ENSGT00940000154723.b.l.a.b #24 ENSGT00940000162892.a.a.c ##25 ENSGT00940000154993.n ##26 ENSGT00940000154723.b.k #24 ENSGT00940000162892.a.b #25 ENSGT00940000154723.b.l.a.a #24 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00530000064839 #30 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 Cebidae ANCESTRAL SPECIES 5 ENSGT00940000161022.b #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b.lc #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.l.b #24 ENSGT00940000162892.a.a.d ##25 ENSGT00940000154723.b.l.a.b #24 ENSGT00940000162892.a.a.c ##25 ENSGT00940000154993.n.a ##26 Cebidae_a ANCESTRAL SPECIES 25 ENSGT00940000161022.b #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b.lc #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.l.b #24 ENSGT00940000162892.a.a.d ##25 ENSGT00940000154723.b.l.a.b #24 ENSGT00940000162892.a.a.c ##25 ENSGT00940000154993.n.a.b ##26 Bolivian squirrel monkey MODERN SPECIES 59 LRRC1 (ENSSBOG00000035746) KLHL31 (ENSSBOG00000033630) GCLC (ENSSBOG00000023419) ELOVL5 (ENSSBOG00000034870) ENSSBOG00000021942 GCM1 (ENSSBOG00000005634) FBXO9 (ENSSBOG00000019141) CILK1 (ENSSBOG00000017283) GSTA4 (ENSSBOG00000020856) ENSSBOG00000025505 GSTA5 (ENSSBOG00000023195) TMEM14A (ENSSBOG00000022452) PSMB9 (ENSSBOG00000022067) #19 TAP1 (ENSSBOG00000027226) #20 PSMB8 (ENSSBOG00000026986) #21 TAP2 (ENSSBOG00000021205) #22 HLA-DOB (ENSSBOG00000029243) #23 ENSSBOG00000012276 #24 ENSSBOG00000035334 ##25 ENSSBOG00000016392 #24 ENSSBOG00000021233 ##25 ENSSBOG00000031743 ##26 ENSSBOG00000032160 ##26 Capuchin MODERN SPECIES 24 VPS52 (ENSCCAG00000029806) RING1 (ENSCCAG00000020672) #7 HSD17B8 (ENSCCAG00000034063) #8 SLC39A7 (ENSCCAG00000021481) #9 RXRB (ENSCCAG00000015878) #10 COL11A2 (ENSCCAG00000021086) #11 HLA-DPB1 (ENSCCAG00000036491) #13 HLA-DPA1 (ENSCCAG00000035048) #12 HLA-DOA (ENSCCAG00000024211) #14 ENSCCAG00000016930 #15 HLA-DMA (ENSCCAG00000031122) #17 HLA-DMB (ENSCCAG00000030904) #18 PSMB9 (ENSCCAG00000036808) #19 TAP1 (ENSCCAG00000024218) #20 PSMB8 (ENSCCAG00000026335) #21 TAP2 (ENSCCAG00000035497) #22 HLA-DOB (ENSCCAG00000034021) #23 ENSCCAG00000028168 #24 ENSCCAG00000023824 ##25 ENSCCAG00000025088 #24 HLA-DQA2 (ENSCCAG00000023549) #25 HLA-DRB1 (ENSCCAG00000025004) #27 ENSCCAG00000024284 ##26 ENSCCAG00000033580 ##26 HLA-DRA (ENSCCAG00000027271) #28 BTNL2 (ENSCCAG00000037406) #29 TSBP1 (ENSCCAG00000034222) #30 ENSCCAG00000029507 GPSM3 (ENSCCAG00000026910) #32 NOTCH4 (ENSCCAG00000025076) #31 PBX2 (ENSCCAG00000034408) #33 Marmoset MODERN SPECIES 16 B3GALT4 (ENSCJAG00000043225) ENSCJAG00000021650 VPS52 (ENSCJAG00000021644) RING1 (ENSCJAG00000081691) #7 ENSCJAG00000021632 #8 SLC39A7 (ENSCJAG00000021622) #9 RXRB (ENSCJAG00000021619) #10 COL11A2 (ENSCJAG00000021577) #11 HLA-DPB1 (ENSCJAG00000021575) #13 HLA-DPA1 (ENSCJAG00000057301) #12 HLA-DOA (ENSCJAG00000021571) #14 ENSCJAG00000021566 #15 HLA-DMA (ENSCJAG00000021558) #17 PSMB9 (ENSCJAG00000021553) #19 TAP1 (ENSCJAG00000021552) #20 TAP2 (ENSCJAG00000021550) #22 HLA-DOB (ENSCJAG00000035217) #23 ENSCJAG00000045515 ##25 ENSCJAG00000021548 #24 ENSCJAG00000072040 ENSCJAG00000043141 ENSCJAG00000073641 ENSCJAG00000082318 ENSCJAG00000046350 ENSCJAG00000044447 ENSCJAG00000042232 ENSCJAG00000072632 ENSCJAG00000047812 ENSCJAG00000083244 ENSCJAG00000010588 ENSCJAG00000082116 Mas night monkey MODERN SPECIES 1006 HLA-DPA1 (ENSANAG00000025586) #12 ENSANAG00000021916 ENSANAG00000020251 HLA-DOA (ENSANAG00000023738) #14 BRD2 (ENSANAG00000025054) #15 ENSANAG00000022510 #16 HLA-DMA (ENSANAG00000024515) #17 HLA-DMB (ENSANAG00000031322) #18 ENSANAG00000029686 PSMB9 (ENSANAG00000018195) #19 TAP1 (ENSANAG00000025374) #20 PSMB8 (ENSANAG00000023214) #21 TAP2 (ENSANAG00000023266) #22 HLA-DQB2 (ENSANAG00000025105) #24 HLA-DQA2 (ENSANAG00000023973) #25 ENSANAG00000023444 #24 ENSANAG00000025439 ##25 Tarsier MODERN SPECIES 6430 HLA-DMA (ENSTSYG00000013575) #17 HLA-DMB (ENSTSYG00000013568) #18 PSMB9 (ENSTSYG00000007747) #19 TAP1 (ENSTSYG00000007737) #20 PSMB8 (ENSTSYG00000007730) #21 TAP2 (ENSTSYG00000029149) #22 HLA-DOB (ENSTSYG00000007697) #23 Strepsirrhini ANCESTRAL SPECIES 7 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993 #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 ENSGT00940000162975 #37 Lemuriformes ANCESTRAL SPECIES 3 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000161821 ENSGT00940000154993 #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 ENSGT00940000162975 #37 Mouse lemur MODERN SPECIES 28 PFDN6 (ENSMICG00000000922) RGL2 (ENSMICG00000000926) TAPBP (ENSMICG00000042293) DAXX (ENSMICG00000000933) ENSMICG00000033163 KIFC1 (ENSMICG00000005648) PHF1 (ENSMICG00000005660) CUTA (ENSMICG00000005673) SYNGAP1 (ENSMICG00000005678) SFTA2 (ENSMICG00000030909) ENSMICG00000035395 ENSMICG00000031166 PSMB9 (ENSMICG00000015307) #19 TAP1 (ENSMICG00000015264) #20 PSMB8 (ENSMICG00000015254) #21 TAP2 (ENSMICG00000015245) #22 HLA-DOB (ENSMICG00000034483) #23 ENSMICG00000031829 #24 ENSMICG00000044751 ENSMICG00000003714 #24 ENSMICG00000028538 ENSMICG00000036984 #26 ENSMICG00000035687 HLA-DRA (ENSMICG00000006228) #28 ENSMICG00000037923 TREML2 (ENSMICG00000027522) ENSMICG00000041702 TREM2 (ENSMICG00000009719) TREML1 (ENSMICG00000035283) NFYA (ENSMICG00000009686) ENSMICG00000038280 Lemuriformes_a ANCESTRAL SPECIES 76 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000154993 #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 ENSGT00940000162975 #37 ENSGT00940000155779.a.b Coquerels sifaka MODERN SPECIES 872 HLA-DPA1 (ENSPCOG00000015236) #12 HLA-DOA (ENSPCOG00000014372) #14 ENSPCOG00000018880 ENSPCOG00000018456 #15 ENSPCOG00000016191 #16 HLA-DMA (ENSPCOG00000022072) #17 HLA-DMB (ENSPCOG00000018934) #18 PSMB9 (ENSPCOG00000017686) #19 TAP1 (ENSPCOG00000019389) #20 PSMB8 (ENSPCOG00000028091) #21 TAP2 (ENSPCOG00000014799) #22 HLA-DOB (ENSPCOG00000022286) #23 HLA-DQB1 (ENSPCOG00000014494) #24 Greater bamboo lemur MODERN SPECIES 650 ENSPSMG00000009792 #12 HLA-DPB1 (ENSPSMG00000009639) #13 HLA-DPA1 (ENSPSMG00000009402) #12 HLA-DOA (ENSPSMG00000009261) #14 ENSPSMG00000009252 BRD2 (ENSPSMG00000009223) #15 HLA-DMA (ENSPSMG00000009171) #17 HLA-DMB (ENSPSMG00000009134) #18 PSMB9 (ENSPSMG00000009117) #19 TAP1 (ENSPSMG00000009102) #20 PSMB8 (ENSPSMG00000009083) #21 TAP2 (ENSPSMG00000008940) #22 HLA-DOB (ENSPSMG00000008851) #23 HLA-DQB1 (ENSPSMG00000008743) #24 ENSPSMG00000008349 #25 ENSPSMG00000007912 HLA-DRA (ENSPSMG00000007272) #28 ENSPSMG00000007226 #29 ENSPSMG00000007220 Bushbaby DUPLICATION Bushbaby MODERN SPECIES 146 B3GALT4 (ENSOGAG00000006228) RPS18 (ENSOGAG00000006225) VPS52 (ENSOGAG00000006222) RING1 (ENSOGAG00000006220) #7 HSD17B8 (ENSOGAG00000006214) #8 SLC39A7 (ENSOGAG00000030006) #9 RXRB (ENSOGAG00000011689) #10 COL11A2 (ENSOGAG00000025975) #11 ENSOGAG00000034269 ENSOGAG00000016138 #13 HLA-DPA1 (ENSOGAG00000006476) #12 HLA-DOA (ENSOGAG00000014685) #14 BRD2 (ENSOGAG00000006473) #15 HLA-DMA (ENSOGAG00000006029) #17 HLA-DMB (ENSOGAG00000032749) #18 ENSOGAG00000013823 #22 PSMB9 (ENSOGAG00000013846) #19 TAP1 (ENSOGAG00000013836) #20 PSMB8 (ENSOGAG00000013830) #21 ENSOGAG00000031343 #22 HLA-DQB1 (ENSOGAG00000005662) #24 ENSOGAG00000008401 ENSOGAG00000030012 ENSOGAG00000009732 #26 HLA-DRA (ENSOGAG00000008398) #28 BTNL2 (ENSOGAG00000008396) #29 ENSOGAG00000025050 ENSOGAG00000013069 #26 ENSOGAG00000025825 NOTCH4 (ENSOGAG00000010193) #31 GPSM3 (ENSOGAG00000032276) #32 Bushbaby MODERN SPECIES 146 HSD17B8 (ENSOGAG00000006214) #8 SLC39A7 (ENSOGAG00000030006) #9 RXRB (ENSOGAG00000011689) #10 COL11A2 (ENSOGAG00000025975) #11 ENSOGAG00000034269 ENSOGAG00000016138 #13 HLA-DPA1 (ENSOGAG00000006476) #12 HLA-DOA (ENSOGAG00000014685) #14 BRD2 (ENSOGAG00000006473) #15 HLA-DMA (ENSOGAG00000006029) #17 HLA-DMB (ENSOGAG00000032749) #18 ENSOGAG00000013823 #22 PSMB9 (ENSOGAG00000013846) #19 TAP1 (ENSOGAG00000013836) #20 PSMB8 (ENSOGAG00000013830) #21 ENSOGAG00000031343 #22 HLA-DQB1 (ENSOGAG00000005662) #24 ENSOGAG00000008401 ENSOGAG00000030012 ENSOGAG00000009732 #26 HLA-DRA (ENSOGAG00000008398) #28 BTNL2 (ENSOGAG00000008396) #29 ENSOGAG00000025050 ENSOGAG00000013069 #26 ENSOGAG00000025825 NOTCH4 (ENSOGAG00000010193) #31 GPSM3 (ENSOGAG00000032276) #32 PBX2 (ENSOGAG00000016303) #33 AGER (ENSOGAG00000030141) #34 RNF5 (ENSOGAG00000031466) #35 AGPAT1 (ENSOGAG00000010187) #36 Euarchontoglires_A ANCESTRAL SPECIES 6 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000161821 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000154993 #26 ENSGT00940000155371 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 Tree shrew MODERN SPECIES 5171 PSMB8 (ENSTBEG00000007794) #21 ENSTBEG00000007418 #22 ENSTBEG00000007262 #23 Glires ANCESTRAL SPECIES 5 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000161821 ENSGT00940000154723.b #24 ENSGT00940000162892 #25 ENSGT00940000154993 #26 ENSGT00940000155371 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 Rodentia ANCESTRAL SPECIES 6 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 Rodentia_A ANCESTRAL SPECIES 8 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 Hystricomorpha ANCESTRAL SPECIES 1 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000162892 #25 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00940000162450 ENSGT00980000198621 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 Hystricomorpha_a ANCESTRAL SPECIES 42 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00940000162450 ENSGT00980000198621 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 Hystricomorpha_b ANCESTRAL SPECIES 3 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000155371 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00940000162450 ENSGT00980000198621 ENSGT00940000154993.k.a #26 ENSGT00940000154993.k.b #26 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 Long-tailed chinchilla MODERN SPECIES 144 VPS52 (ENSCLAG00000008115) RING1 (ENSCLAG00000009149) #7 HSD17B8 (ENSCLAG00000007885) #8 SLC39A7 (ENSCLAG00000014475) #9 RXRB (ENSCLAG00000013699) #10 COL11A2 (ENSCLAG00000007783) #11 HLA-DPA1 (ENSCLAG00000010668) #12 HLA-DPB1 (ENSCLAG00000013126) #13 HLA-DOA (ENSCLAG00000011531) #14 BRD2 (ENSCLAG00000009750) #15 HLA-DMA (ENSCLAG00000014679) #17 HLA-DMB (ENSCLAG00000008468) #18 PSMB9 (ENSCLAG00000007918) #19 TAP1 (ENSCLAG00000008052) #20 PSMB8 (ENSCLAG00000006990) #21 TAP2 (ENSCLAG00000012654) #22 HLA-DOB (ENSCLAG00000011735) #23 HLA-DQB2 (ENSCLAG00000011869) #24 ENSCLAG00000009507 ENSCLAG00000016042 ENSCLAG00000013098 HLA-DRA (ENSCLAG00000009768) #28 BTNL2 (ENSCLAG00000007142) #29 ENSCLAG00000015677 ENSCLAG00000011744 ENSCLAG00000009141 GPSM3 (ENSCLAG00000007406) #32 PBX2 (ENSCLAG00000007051) #33 AGER (ENSCLAG00000013330) #34 RNF5 (ENSCLAG00000009576) #35 ENSCLAG00000008617 #36 Degu MODERN SPECIES 46 WDR46 (ENSODEG00000017342) B3GALT4 (ENSODEG00000017281) ENSODEG00000017344 VPS52 (ENSODEG00000017744) RING1 (ENSODEG00000017691) #7 HSD17B8 (ENSODEG00000017486) #8 SLC39A7 (ENSODEG00000017361) #9 RXRB (ENSODEG00000017146) #10 COL11A2 (ENSODEG00000017513) #11 HLA-DPA1 (ENSODEG00000017716) #12 HLA-DOA (ENSODEG00000017569) #14 BRD2 (ENSODEG00000017239) #15 ENSODEG00000017381 #17 HLA-DMB (ENSODEG00000017802) #18 PSMB8 (ENSODEG00000017662) #21 TAP2 (ENSODEG00000017797) #22 PSMB9 (ENSODEG00000017656) #19 TAP1 (ENSODEG00000017484) #20 HLA-DOB (ENSODEG00000017495) #23 ENSODEG00000017249 #24 ENSODEG00000017510 ENSODEG00000017402 #26 ENSODEG00000017435 #26 ENSODEG00000017398 ENSODEG00000017414 #29 ENSODEG00000017401 ENSODEG00000017653 ENSODEG00000017483 #32 PBX2 (ENSODEG00000017449) #33 ENSODEG00000017466 #34 ENSODEG00000017614 #35 Guinea pig MODERN SPECIES 15 HSD17B8 (ENSCPOG00000013940) #8 SLC39A7 (ENSCPOG00000023790) #9 RXRB (ENSCPOG00000013936) #10 COL11A2 (ENSCPOG00000020466) #11 ENSCPOG00000035477 #12 ENSCPOG00000024142 #13 ENSCPOG00000032859 #13 ENSCPOG00000002427 #12 HLA-DOA (ENSCPOG00000012562) #14 BRD2 (ENSCPOG00000002811) #15 HLA-DMA (ENSCPOG00000015044) #17 HLA-DMB (ENSCPOG00000002810) #18 PSMB9 (ENSCPOG00000002121) #19 TAP1 (ENSCPOG00000026988) #20 PSMB8 (ENSCPOG00000000729) #21 TAP2 (ENSCPOG00000038951) #22 HLA-DOB (ENSCPOG00000033895) #23 HLA-DQB2 (ENSCPOG00000038606) #24 ENSCPOG00000014463 #25 ENSCPOG00000040083 #26 ENSCPOG00000003574 #26 ENSCPOG00000036465 HLA-DRA (ENSCPOG00000012309) #28 BTNL2 (ENSCPOG00000004277) #29 ENSCPOG00000023019 ENSCPOG00000000591 PBX2 (ENSCPOG00000037281) #33 AGER (ENSCPOG00000000590) #34 RNF5 (ENSCPOG00000030132) #35 AGPAT1 (ENSCPOG00000037644) #36 EGFL8 (ENSCPOG00000040046) #37 Naked mole-rat female MODERN SPECIES 4 VPS52 (ENSHGLG00000017226) RING1 (ENSHGLG00000019474) #7 HSD17B8 (ENSHGLG00000019497) #8 SLC39A7 (ENSHGLG00000018434) #9 RXRB (ENSHGLG00000018456) #10 COL11A2 (ENSHGLG00000018531) #11 HLA-DPB1 (ENSHGLG00000019389) #13 HLA-DPA1 (ENSHGLG00000019266) #12 HLA-DOA (ENSHGLG00000019255) #14 BRD2 (ENSHGLG00000019334) #15 HLA-DMA (ENSHGLG00000017048) #17 HLA-DMB (ENSHGLG00000017060) #18 PSMB9 (ENSHGLG00000036914) #19 TAP1 (ENSHGLG00000017081) #20 PSMB8 (ENSHGLG00000017087) #21 TAP2 (ENSHGLG00000019356) #22 HLA-DOB (ENSHGLG00000016652) #23 HLA-DQB2 (ENSHGLG00000038840) #24 ENSHGLG00000043086 ENSHGLG00000011398 #25 ENSHGLG00000011613 #26 ENSHGLG00000011873 #26 ENSHGLG00000012074 #26 HLA-DRA (ENSHGLG00000012243) #28 GPSM3 (ENSHGLG00000012807) #32 ENSHGLG00000013320 #33 AGER (ENSHGLG00000013559) #34 ENSHGLG00000048713 #35 AGPAT1 (ENSHGLG00000013956) #36 EGFL8 (ENSHGLG00000014379) #37 PPT2 (ENSHGLG00000016656) Sciuridae ANCESTRAL SPECIES 1 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 Marmotini ANCESTRAL SPECIES 18 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353.i #23 ENSGT00940000161821.l.a ENSGT00940000154723.b #24 ENSGT00940000161821.k ENSGT00940000154993.k.a #26 ENSGT00940000154993.k.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00940000162450.b.a ENSGT00940000163287 #31 ENSGT00980000198621 ENSGT00390000002471 #32 ENSGT00940000160293 #33 Marmotini_b ANCESTRAL SPECIES 8 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353.i #23 Arctic ground squirrel MODERN SPECIES 1178 PSMB9 (ENSUPAG00010005439) #19 TAP1 (ENSUPAG00010004755) #20 PSMB8 (ENSUPAG00010004745) #21 TAP2 (ENSUPAG00010004733) #22 ENSUPAG00010004730 #23 Squirrel MODERN SPECIES 76 VPS52 (ENSSTOG00000002397) RING1 (ENSSTOG00000026166) #7 HSD17B8 (ENSSTOG00000020853) #8 SLC39A7 (ENSSTOG00000014304) #9 RXRB (ENSSTOG00000027099) #10 COL11A2 (ENSSTOG00000003578) #11 HLA-DPB1 (ENSSTOG00000003567) #13 HLA-DPA1 (ENSSTOG00000003558) #12 HLA-DOA (ENSSTOG00000010820) #14 BRD2 (ENSSTOG00000010807) #15 HLA-DMA (ENSSTOG00000009246) #17 HLA-DMB (ENSSTOG00000019821) #18 PSMB9 (ENSSTOG00000003475) #19 TAP1 (ENSSTOG00000003451) #20 PSMB8 (ENSSTOG00000019724) #21 TAP2 (ENSSTOG00000003413) #22 ENSSTOG00000030715 HLA-DOB (ENSSTOG00000003405) #23 ENSSTOG00000028098 Alpin marmot MODERN SPECIES 20 VPS52 (ENSMMMG00000024234) RING1 (ENSMMMG00000024233) #7 HSD17B8 (ENSMMMG00000024232) #8 SLC39A7 (ENSMMMG00000024231) #9 RXRB (ENSMMMG00000024230) #10 COL11A2 (ENSMMMG00000024229) #11 HLA-DPB1 (ENSMMMG00000024228) #13 HLA-DPA1 (ENSMMMG00000024227) #12 HLA-DOA (ENSMMMG00000024226) #14 BRD2 (ENSMMMG00000024225) #15 HLA-DMA (ENSMMMG00000024224) #17 HLA-DMB (ENSMMMG00000024223) #18 PSMB9 (ENSMMMG00000024222) #19 TAP1 (ENSMMMG00000024221) #20 PSMB8 (ENSMMMG00000024220) #21 TAP2 (ENSMMMG00000024218) #22 HLA-DOB (ENSMMMG00000024217) #23 ENSMMMG00000024215 ENSMMMG00000024056 #24 ENSMMMG00000020395 ENSMMMG00000018808 #24 ENSMMMG00000018797 ENSMMMG00000018785 ENSMMMG00000018780 #26 ENSMMMG00000018777 #26 HLA-DRA (ENSMMMG00000018744) #28 BTNL2 (ENSMMMG00000018734) #29 ENSMMMG00000018723 ENSMMMG00000018720 ENSMMMG00000018661 ENSMMMG00000018655 Eurasian red squirrel MODERN SPECIES 16 ENSSVLG00005004778 RING1 (ENSSVLG00005004804) #7 HSD17B8 (ENSSVLG00005004902) #8 SLC39A7 (ENSSVLG00005004925) #9 RXRB (ENSSVLG00005004952) #10 COL11A2 (ENSSVLG00005005202) #11 HLA-DPB1 (ENSSVLG00005006269) #13 HLA-DPA1 (ENSSVLG00005006304) #12 HLA-DOA (ENSSVLG00005006335) #14 BRD2 (ENSSVLG00005006374) #15 HLA-DMA (ENSSVLG00005006465) #17 HLA-DMB (ENSSVLG00005006515) #18 PSMB9 (ENSSVLG00005006563) #19 TAP1 (ENSSVLG00005006618) #20 PSMB8 (ENSSVLG00005006647) #21 TAP2 (ENSSVLG00005006696) #22 HLA-DOB (ENSSVLG00005006746) #23 ENSSVLG00005006864 #24 ENSSVLG00005007173 HLA-DQB2 (ENSSVLG00005007368) #24 ENSSVLG00005007455 ENSSVLG00005007482 #26 ENSSVLG00005007511 ENSSVLG00005007546 #26 HLA-DRA (ENSSVLG00005007588) #28 BTNL2 (ENSSVLG00005007627) #29 ENSSVLG00005007707 ENSSVLG00005007731 ENSSVLG00005007751 ENSSVLG00005008664 NOTCH4 (ENSSVLG00005008720) #31 Rodentia_B ANCESTRAL SPECIES 8 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000154993.l #26 ENSGT00940000155371 ENSGT00940000154993.k.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 Myomorpha ANCESTRAL SPECIES 11 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 Muroidea ANCESTRAL SPECIES 15 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 Muroidea_A ANCESTRAL SPECIES 8 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00980000198621 ENSGT00940000163287 #31 ENSGT00390000002471 #32 Cricetidae ANCESTRAL SPECIES 9 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00940000162450 ENSGT00980000198621 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 Cricetinae ANCESTRAL SPECIES 43 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.k.b.b #26 ENSGT00940000154993.k.a #26 ENSGT00940000155371 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00940000162450 ENSGT00980000198621 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 Golden Hamster MODERN SPECIES 856 Ring1 (ENSMAUG00000012254) #7 Hsd17b8 (ENSMAUG00000013407) #8 Slc39a7 (ENSMAUG00000015255) #9 Rxrb (ENSMAUG00000009043) #10 Col11a2 (ENSMAUG00000021348) #11 Brd2 (ENSMAUG00000006799) #15 H2-DMa (ENSMAUG00000000861) #17 ENSMAUG00000008923 #18 Psmb9 (ENSMAUG00000007584) #19 Tap1 (ENSMAUG00000017718) #20 Psmb8 (ENSMAUG00000003396) #21 Tap2 (ENSMAUG00000015081) #22 H2-Ob (ENSMAUG00000007698) #23 H2-Ab1 (ENSMAUG00000020395) #24 H2-Aa (ENSMAUG00000003363) H2-Eb2 (ENSMAUG00000018151) #26 Btnl2 (ENSMAUG00000003530) #29 Btnl1 (ENSMAUG00000016817) ENSMAUG00000015609 ENSMAUG00000009410 Notch4 (ENSMAUG00000015895) Gpsm3 (ENSMAUG00000013374) #32 Pbx2 (ENSMAUG00000003275) #33 Ager (ENSMAUG00000001006) #34 Rnf5 (ENSMAUG00000000684) #35 Agpat1 (ENSMAUG00000011278) #36 Egfl8 (ENSMAUG00000013647) #37 Cricetidae_B ANCESTRAL SPECIES 12 ENSGT00390000008815 ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993.l #26 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00940000162450 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 Prairie vole MODERN SPECIES 352 Vps52 (ENSMOCG00000004229) ENSMOCG00000014473 Ring1 (ENSMOCG00000020973) #7 Hsd17b8 (ENSMOCG00000001695) #8 Slc39a7 (ENSMOCG00000019993) #9 Rxrb (ENSMOCG00000000374) #10 Col11a2 (ENSMOCG00000016852) #11 ENSMOCG00000010963 #12 H2-Oa (ENSMOCG00000020236) #14 Brd2 (ENSMOCG00000016368) #15 H2-DMa (ENSMOCG00000002744) #17 ENSMOCG00000022309 #18 Psmb9 (ENSMOCG00000005369) #19 Tap1 (ENSMOCG00000019762) #20 Psmb8 (ENSMOCG00000014719) #21 Tap2 (ENSMOCG00000022898) #22 H2-Ob (ENSMOCG00000008562) #23 H2-Ab1 (ENSMOCG00000008439) #24 ENSMOCG00000013355 ENSMOCG00000017941 #26 ENSMOCG00000019721 H2-Ea (ENSMOCG00000008786) #28 Btnl2 (ENSMOCG00000014437) #29 Btnl1 (ENSMOCG00000018715) ENSMOCG00000011431 Rnf39 (ENSMOCG00000015333) Ppp1r11 (ENSMOCG00000002207) Polr1h (ENSMOCG00000008537) Polr1has (ENSMOCG00000015745) H2-M5 (ENSMOCG00000004410) Mog (ENSMOCG00000019437) Northern American deer mouse MODERN SPECIES 13 ENSPEMG00000024622 Ring1 (ENSPEMG00000019238) #7 Hsd17b8 (ENSPEMG00000012925) #8 Slc39a7 (ENSPEMG00000003403) #9 Rxrb (ENSPEMG00000018454) #10 Col11a2 (ENSPEMG00000016918) #11 ENSPEMG00000026148 #13 ENSPEMG00000015442 #12 H2-Oa (ENSPEMG00000011158) #14 Brd2 (ENSPEMG00000018138) #15 H2-DMa (ENSPEMG00000013203) #17 ENSPEMG00000018040 #18 Psmb9 (ENSPEMG00000009609) #19 Tap1 (ENSPEMG00000012461) #20 Psmb8 (ENSPEMG00000012170) #21 Tap2 (ENSPEMG00000010503) #22 H2-Ob (ENSPEMG00000001796) #23 ENSPEMG00000012719 #24 ENSPEMG00000007095 ENSPEMG00000015401 #24 ENSPEMG00000012679 H2-Eb1 (ENSPEMG00000002889) H2-Eb2 (ENSPEMG00000006456) #26 H2-Ea (ENSPEMG00000008261) #28 Btnl2 (ENSPEMG00000007431) #29 Btnl1 (ENSPEMG00000008094) ENSPEMG00000028515 #26 ENSPEMG00000011748 ENSPEMG00000026840 ENSPEMG00000026496 Notch4 (ENSPEMG00000015181) Murinae ANCESTRAL SPECIES 18 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 Mus ANCESTRAL SPECIES 16 ENSGT00390000008815 ENSGT00980000198488.m.a.b.a.b.a.a.a.c ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450.f ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 Mus_A ANCESTRAL SPECIES 10 ENSGT00390000008815 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381.h #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450.f ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b.c.a #35 Mus_B ANCESTRAL SPECIES 9 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381.g #18 ENSGT00940000160381.h #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450.e ENSGT00940000162450.f ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 Mus_C ANCESTRAL SPECIES 9 ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381.g #18 ENSGT00940000160381.h #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00860000136204 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000155371 ENSGT00940000154993.k.b.b #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450.e ENSGT00940000162450.f ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 Steppe mouse MODERN SPECIES 2564 ENSMSIG00000012243 Ring1 (ENSMSIG00000012190) #7 ENSMSIG00000012153 #8 Slc39a7 (ENSMSIG00000012137) #9 Rxrb (ENSMSIG00000012091) #10 Col11a2 (ENSMSIG00000011347) #11 ENSMSIG00000011214 #12 H2-Oa (ENSMSIG00000011198) #14 Brd2 (ENSMSIG00000011118) #15 H2-DMa (ENSMSIG00000011088) #17 H2-DMb1 (ENSMSIG00000011055) #18 Psmb9 (ENSMSIG00000011042) #19 ENSMSIG00000011012 #20 Psmb8 (ENSMSIG00000010986) #21 ENSMSIG00000010972 Tap2 (ENSMSIG00000010919) #22 H2-Ob (ENSMSIG00000010868) #23 ENSMSIG00000010843 #24 H2-Aa (ENSMSIG00000010823) ENSMSIG00000010807 H2-Eb2 (ENSMSIG00000010788) #26 H2-Ea (ENSMSIG00000010776) #28 Btnl2 (ENSMSIG00000010760) #29 Btnl1 (ENSMSIG00000010748) ENSMSIG00000010738 Tsbp1 (ENSMSIG00000010478) #30 Btnl4 (ENSMSIG00000010440) ENSMSIG00000010410 spretus MODERN SPECIES 8 B3galt4 (MGP_SPRETEiJ_G0022339) MGP_SPRETEiJ_G0022340 Ring1 (MGP_SPRETEiJ_G0022342) #7 Hsd17b8 (MGP_SPRETEiJ_G0022343) #8 Slc39a7 (MGP_SPRETEiJ_G0022344) #9 Rxrb (MGP_SPRETEiJ_G0022345) #10 Col11a2 (MGP_SPRETEiJ_G0022346) #11 H2-Oa (MGP_SPRETEiJ_G0022347) #14 Brd2 (MGP_SPRETEiJ_G0022348) #15 H2-DMa (MGP_SPRETEiJ_G0022349) #17 MGP_SPRETEiJ_G0022350 #18 H2-DMb2 (MGP_SPRETEiJ_G0022351) #18 Psmb9 (MGP_SPRETEiJ_G0022352) #19 Tap1 (MGP_SPRETEiJ_G0022353) #20 Psmb8 (MGP_SPRETEiJ_G0022354) #21 Tap2 (MGP_SPRETEiJ_G0022355) #22 MGP_SPRETEiJ_G0022356 H2-Ob (MGP_SPRETEiJ_G0022357) #23 H2-Ab1 (MGP_SPRETEiJ_G0022358) #24 H2-Aa (MGP_SPRETEiJ_G0022359) MGP_SPRETEiJ_G0022360 H2-Eb2 (MGP_SPRETEiJ_G0022361) #26 Btnl2 (MGP_SPRETEiJ_G0022362) #29 Btnl1 (MGP_SPRETEiJ_G0022363) Tsbp1 (MGP_SPRETEiJ_G0022364) #30 MGP_SPRETEiJ_G0022366 Notch4 (MGP_SPRETEiJ_G0022367) Gpsm3 (MGP_SPRETEiJ_G0022368) #32 Pbx2 (MGP_SPRETEiJ_G0022369) #33 Ager (MGP_SPRETEiJ_G0022370) #34 Rnf5 (MGP_SPRETEiJ_G0022371) #35 Mouse MODERN SPECIES 8 Vps52 (ENSMUSG00000024319) H2-K1 (ENSMUSG00000061232) Ring1 (ENSMUSG00000024325) #7 Hsd17b8 (ENSMUSG00000073422) #8 Slc39a7 (ENSMUSG00000024327) #9 Rxrb (ENSMUSG00000039656) #10 Col11a2 (ENSMUSG00000024330) #11 H2-Oa (ENSMUSG00000024334) #14 Brd2 (ENSMUSG00000024335) #15 H2-DMa (ENSMUSG00000037649) #17 H2-DMb2 (ENSMUSG00000037548) #18 H2-DMb1 (ENSMUSG00000079547) #18 Psmb9 (ENSMUSG00000096727) #19 Tap1 (ENSMUSG00000037321) #20 Psmb8 (ENSMUSG00000024338) #21 Tap2 (ENSMUSG00000024339) #22 H2-Ob (ENSMUSG00000041538) #23 H2-Ab1 (ENSMUSG00000073421) #24 H2-Aa (ENSMUSG00000036594) H2-Eb1 (ENSMUSG00000060586) H2-Eb2 (ENSMUSG00000067341) #26 H2-Ea (ENSMUSG00000036322) #28 Btnl2 (ENSMUSG00000024340) #29 Btnl1 (ENSMUSG00000062638) Tsbp1 (ENSMUSG00000057246) #30 Btnl4 (ENSMUSG00000058435) Btnl6 (ENSMUSG00000092618) Notch4 (ENSMUSG00000015468) Gpsm3 (ENSMUSG00000034786) #32 Pbx2 (ENSMUSG00000034673) #33 Ager (ENSMUSG00000015452) #34 Ryukyu mouse MODERN SPECIES 8 MGP_CAROLIEiJ_G0021434 MGP_CAROLIEiJ_G0021435 Ring1 (MGP_CAROLIEiJ_G0021436) #7 Hsd17b8 (MGP_CAROLIEiJ_G0021437) #8 Slc39a7 (MGP_CAROLIEiJ_G0021438) #9 Rxrb (MGP_CAROLIEiJ_G0021439) #10 Col11a2 (MGP_CAROLIEiJ_G0021440) #11 H2-Oa (MGP_CAROLIEiJ_G0021441) #14 Brd2 (MGP_CAROLIEiJ_G0021442) #15 H2-DMa (MGP_CAROLIEiJ_G0021443) #17 MGP_CAROLIEiJ_G0021444 #18 MGP_CAROLIEiJ_G0021445 #18 Psmb9 (MGP_CAROLIEiJ_G0021446) #19 Tap1 (MGP_CAROLIEiJ_G0021447) #20 Psmb8 (MGP_CAROLIEiJ_G0021448) #21 Tap2 (MGP_CAROLIEiJ_G0021449) #22 MGP_CAROLIEiJ_G0021450 H2-Ob (MGP_CAROLIEiJ_G0021451) #23 H2-Ab1 (MGP_CAROLIEiJ_G0021452) #24 H2-Aa (MGP_CAROLIEiJ_G0021453) MGP_CAROLIEiJ_G0021454 H2-Eb2 (MGP_CAROLIEiJ_G0021455) #26 Btnl2 (MGP_CAROLIEiJ_G0021456) #29 Btnl1 (MGP_CAROLIEiJ_G0021457) Tsbp1 (MGP_CAROLIEiJ_G0021458) #30 Btnl6 (MGP_CAROLIEiJ_G0021459) MGP_CAROLIEiJ_G0021460 Notch4 (MGP_CAROLIEiJ_G0021461) Gpsm3 (MGP_CAROLIEiJ_G0021462) #32 Pbx2 (MGP_CAROLIEiJ_G0021463) #33 Ager (MGP_CAROLIEiJ_G0021464) #34 Shrew mouse MODERN SPECIES 9 Pfdn6 (MGP_PahariEiJ_G0020430) Wdr46 (MGP_PahariEiJ_G0020431) B3galt4 (MGP_PahariEiJ_G0020432) MGP_PahariEiJ_G0020433 Ring1 (MGP_PahariEiJ_G0020434) #7 Hsd17b8 (MGP_PahariEiJ_G0020435) #8 Slc39a7 (MGP_PahariEiJ_G0020436) #9 Rxrb (MGP_PahariEiJ_G0020437) #10 Col11a2 (MGP_PahariEiJ_G0020438) #11 H2-Oa (MGP_PahariEiJ_G0020439) #14 Brd2 (MGP_PahariEiJ_G0020440) #15 H2-DMa (MGP_PahariEiJ_G0020441) #17 Psmb9 (MGP_PahariEiJ_G0020442) #19 Tap1 (MGP_PahariEiJ_G0020443) #20 Psmb8 (MGP_PahariEiJ_G0020444) #21 Tap2 (MGP_PahariEiJ_G0020445) #22 MGP_PahariEiJ_G0020446 H2-Ob (MGP_PahariEiJ_G0020447) #23 H2-Ab1 (MGP_PahariEiJ_G0020448) #24 H2-Aa (MGP_PahariEiJ_G0020449) MGP_PahariEiJ_G0020450 H2-Eb2 (MGP_PahariEiJ_G0020451) #26 Btnl2 (MGP_PahariEiJ_G0020452) #29 Btnl1 (MGP_PahariEiJ_G0020453) Tsbp1 (MGP_PahariEiJ_G0020454) #30 MGP_PahariEiJ_G0020455 Notch4 (MGP_PahariEiJ_G0020456) Gpsm3 (MGP_PahariEiJ_G0020457) #32 Pbx2 (MGP_PahariEiJ_G0020458) #33 Ager (MGP_PahariEiJ_G0020459) #34 Agpat1 (MGP_PahariEiJ_G0020461) #36 Rat MODERN SPECIES 12 Vps52 (ENSRNOG00000000470) Ring1 (ENSRNOG00000000467) #7 Hsd17b8 (ENSRNOG00000000466) #8 Slc39a7 (ENSRNOG00000000465) #9 Rxrb (ENSRNOG00000000464) #10 Col11a2 (ENSRNOG00000000463) #11 RT1-Hb-ps1 (ENSRNOG00000061936) #13 RT1-Ha (ENSRNOG00000045908) #12 RT1-DOa (ENSRNOG00000026762) #14 Brd2 (ENSRNOG00000000461) #15 RT1-DMa (ENSRNOG00000066773) #17 RT1-DMb (ENSRNOG00000049491) #18 Psmb9 (ENSRNOG00000000459) #19 Tap1 (ENSRNOG00000000457) #20 Psmb8 (ENSRNOG00000000456) #21 Tap2 (ENSRNOG00000000455) #22 RT1-DOb (ENSRNOG00000000454) #23 RT1-Bb (ENSRNOG00000032708) #24 RT1-Ba (ENSRNOG00000000451) RT1-Db1 (ENSRNOG00000033215) RT1-Db2 (ENSRNOG00000030431) RT1-Da (ENSRNOG00000032844) #28 Btnl2 (ENSRNOG00000028541) #29 Btnl3 (ENSRNOG00000039396) Tsbp1 (ENSRNOG00000039398) #30 Btn3a2 (ENSRNOG00000068592) Btnl5 (ENSRNOG00000047304) AABR07044388.4 (ENSRNOG00000052710) Btnl7 (ENSRNOG00000000446) Btnl8 (ENSRNOG00000064738) Btnl4 (ENSRNOG00000068088) Lesser Egyptian jerboa MODERN SPECIES 41 Rps18 (ENSJJAG00000018899) Vps52 (ENSJJAG00000020884) Ring1 (ENSJJAG00000022246) #7 Hsd17b8 (ENSJJAG00000021794) #8 Slc39a7 (ENSJJAG00000014121) #9 Rxrb (ENSJJAG00000004710) #10 Col11a2 (ENSJJAG00000010448) #11 ENSJJAG00000023713 #13 H2-Oa (ENSJJAG00000000542) #14 Brd2 (ENSJJAG00000010183) #15 H2-DMa (ENSJJAG00000012555) #17 ENSJJAG00000004664 #18 Psmb9 (ENSJJAG00000022884) #19 Tap1 (ENSJJAG00000022861) #20 Psmb8 (ENSJJAG00000023598) #21 Tap2 (ENSJJAG00000004300) #22 ENSJJAG00000003836 H2-Ob (ENSJJAG00000022338) #23 Kangaroo rat MODERN SPECIES 519 Vps52 (ENSDORG00000013822) Ring1 (ENSDORG00000013820) #7 Hsd17b8 (ENSDORG00000013819) #8 Slc39a7 (ENSDORG00000013818) #9 Rxrb (ENSDORG00000013816) #10 Col11a2 (ENSDORG00000013815) #11 ENSDORG00000024606 #13 ENSDORG00000004500 #12 H2-Oa (ENSDORG00000004499) #14 Brd2 (ENSDORG00000004497) #15 ENSDORG00000005173 #17 ENSDORG00000005172 #18 Psmb9 (ENSDORG00000006231) #19 Tap1 (ENSDORG00000029698) #20 Psmb8 (ENSDORG00000028592) #21 Tap2 (ENSDORG00000008311) #22 ENSDORG00000008310 #23 ENSDORG00000011904 ENSDORG00000006991 #26 ENSDORG00000029602 #26 ENSDORG00000024908 H2-Ea (ENSDORG00000014782) #28 ENSDORG00000028297 ENSDORG00000009936 Gpsm3 (ENSDORG00000025609) #32 Pbx2 (ENSDORG00000009932) #33 ENSDORG00000009930 #34 Rnf5 (ENSDORG00000023271) #35 Agpat1 (ENSDORG00000009925) #36 Egfl8 (ENSDORG00000019824) #37 Ppt2 (ENSDORG00000029200) Lagomorpha ANCESTRAL SPECIES 2 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162498 #12 ENSGT00940000162390 #13 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000161821 ENSGT00940000154993 #26 ENSGT00940000154723.b #24 ENSGT00940000155371 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 Rabbit MODERN SPECIES 3 B3GALT4 (ENSOCUG00000010550) ENSOCUG00000010546 VPS52 (ENSOCUG00000010533) HSD17B8 (ENSOCUG00000020995) #8 SLC39A7 (ENSOCUG00000011598) #9 RXRB (ENSOCUG00000011590) #10 COL11A2 (ENSOCUG00000016497) #11 HLA-DPB1 (ENSOCUG00000008721) #13 ENSOCUG00000003319 #14 BRD2 (ENSOCUG00000003097) #15 HLA-DMA (ENSOCUG00000022573) #17 HLA-DMB (ENSOCUG00000026567) #18 ENSOCUG00000002139 #19 TAP1 (ENSOCUG00000002135) #20 PSMB8 (ENSOCUG00000002131) #21 TAP2 (ENSOCUG00000002489) #22 HLA-DOB (ENSOCUG00000029437) #23 ENSOCUG00000002480 HLA-DQB1 (ENSOCUG00000002485) #24 ENSOCUG00000030453 ENSOCUG00000029731 #26 HLA-DRA (ENSOCUG00000009103) #28 ENSOCUG00000025822 ENSOCUG00000006769 #29 ENSOCUG00000021762 SFTA2 (ENSOCUG00000035950) GTF2H4 (ENSOCUG00000021496) DDR1 (ENSOCUG00000016487) IER3 (ENSOCUG00000016451) FLOT1 (ENSOCUG00000017308) TUBB (ENSOCUG00000002187) Pika MODERN SPECIES 4582 ENSOPRG00000001644 #22 ENSOPRG00000001634 #23 Laurasiatheria ANCESTRAL SPECIES 7 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.m.a ENSGT00940000154993 #26 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000161847 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 #30 ENSGT00940000162450 Eulipotyphla ANCESTRAL SPECIES ENSGT00940000160499 #22 Common shrew MODERN SPECIES 6712 ENSSARG00000009645 #22 Hedgehog MODERN SPECIES 12688 TAP2 (ENSEEUG00000011038) #22 Laurasiatheria_a ANCESTRAL SPECIES 7 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.m.a ENSGT00940000154993 #26 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000161847 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 #30 ENSGT00940000162450 Artiodactyla ANCESTRAL SPECIES 15 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.m.a.a ENSGT00940000155371.m.a.b.b ENSGT00940000154993 #26 ENSGT00940000155371.n ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 Suina ANCESTRAL SPECIES 17 ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.m.a.a ENSGT00940000155371.n ENSGT00940000154993 #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 Pig MODERN SPECIES 15 GFRAL (ENSSSCG00000001480) HMGCLL1 (ENSSSCG00000001479) BMP5 (ENSSSCG00000001478) RING1 (ENSSSCG00000001477) #7 HSD17B8 (ENSSSCG00000001476) #8 SLC39A7 (ENSSSCG00000001475) #9 RXRB (ENSSSCG00000001474) #10 COL11A2 (ENSSSCG00000001473) #11 SLA-DOA (ENSSSCG00000001472) #14 BRD2 (ENSSSCG00000001471) #15 SLA-DMA (ENSSSCG00000001470) #17 SLA-DMB (ENSSSCG00000001469) #18 TAP1 (ENSSSCG00000025618) #20 PSMB9 (ENSSSCG00000001463) #19 PSMB8 (ENSSSCG00000026951) #21 TAP2 (ENSSSCG00000025593) #22 HLA-DOB (ENSSSCG00000001459) #23 ENSSSCG00000063263 #24 ENSSSCG00000001458 ENSSSCG00000043413 SLA-DQB1 (ENSSSCG00000001457) #24 ENSSSCG00000001456 ENSSSCG00000001455 ENSSSCG00000061569 ENSSSCG00000031336 ENSSSCG00000061450 HLA-DRA (ENSSSCG00000001453) #28 BTNL2 (ENSSSCG00000025071) #29 ENSSSCG00000027921 ENSSSCG00000033414 ENSSSCG00000030874 Chacoan peccary MODERN SPECIES 782 HCRTR2 (ENSCWAG00000012598) GFRAL (ENSCWAG00000012676) HMGCLL1 (ENSCWAG00000012792) BMP5 (ENSCWAG00000013472) RING1 (ENSCWAG00000013538) #7 HSD17B8 (ENSCWAG00000013599) #8 SLC39A7 (ENSCWAG00000013691) #9 COL11A2 (ENSCWAG00000013860) #11 HLA-DOA (ENSCWAG00000015899) #14 BRD2 (ENSCWAG00000015939) #15 HLA-DMA (ENSCWAG00000016104) #17 HLA-DMB (ENSCWAG00000016177) #18 PSMB9 (ENSCWAG00000016225) #19 TAP1 (ENSCWAG00000016313) #20 PSMB8 (ENSCWAG00000016617) #21 TAP2 (ENSCWAG00000016671) #22 ENSCWAG00000016717 #23 ENSCWAG00000016773 #23 HLA-DQB1 (ENSCWAG00000016835) #24 ENSCWAG00000016903 ENSCWAG00000016932 ENSCWAG00000016954 #26 HLA-DRA (ENSCWAG00000016997) #28 BTNL2 (ENSCWAG00000017038) #29 ENSCWAG00000017173 ENSCWAG00000017259 ENSCWAG00000017301 ENSCWAG00000017332 #30 ENSCWAG00000017375 NOTCH4 (ENSCWAG00000017439) #31 GPSM3 (ENSCWAG00000017614) #32 Artiodactyla_a ANCESTRAL SPECIES 19 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.m.a.a ENSGT00940000154993 #26 ENSGT00940000155371.m.a.b.b ENSGT00940000155371.m.b ENSGT00940000155371.n ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 Camelidae ANCESTRAL SPECIES 13 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.jb #24 ENSGT00940000155371.m.b ENSGT00940000154723.b.ib #24 ENSGT00940000161821.d ENSGT00940000155371.m.a.a ENSGT00940000155371.m.a.b.a ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 Arabian camel MODERN SPECIES 12 RXRB (ENSCDRG00005021632) #10 COL11A2 (ENSCDRG00005021542) #11 HLA-DPB1 (ENSCDRG00005021506) #13 HLA-DPA1 (ENSCDRG00005021505) #12 HLA-DOA (ENSCDRG00005021502) #14 BRD2 (ENSCDRG00005021496) #15 HLA-DMA (ENSCDRG00005021489) #17 HLA-DMB (ENSCDRG00005021484) #18 PSMB9 (ENSCDRG00005021480) #19 TAP1 (ENSCDRG00005021477) #20 PSMB8 (ENSCDRG00005021475) #21 HLA-DOB (ENSCDRG00005021474) #23 ENSCDRG00005021472 #24 ENSCDRG00005021469 ENSCDRG00005021466 TAP2 (ENSCDRG00005021460) #22 ENSCDRG00005021455 #24 ENSCDRG00005021452 #24 ENSCDRG00005021448 ENSCDRG00005021439 ENSCDRG00005021434 HLA-DRA (ENSCDRG00005021429) #28 BTNL2 (ENSCDRG00005021424) #29 ENSCDRG00005021419 ENSCDRG00005021416 ENSCDRG00005021411 #30 ENSCDRG00005021398 NOTCH4 (ENSCDRG00005021381) #31 GPSM3 (ENSCDRG00005021372) #32 PBX2 (ENSCDRG00005021366) #33 AGER (ENSCDRG00005021314) #34 Alpaca MODERN SPECIES 2777 PSMB9 (ENSVPAG00000012498) #19 ENSVPAG00000012497 #20 PSMB8 (ENSVPAG00000012496) #21 ENSVPAG00000012495 #22 ENSVPAG00000012493 #23 Artiodactyla_b ANCESTRAL SPECIES 15 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.b ENSGT00940000155371.m.a.b.b ENSGT00940000154993 #26 ENSGT00940000155371.m.a.a ENSGT00940000161821.d ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b Cetacea ANCESTRAL SPECIES 7 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022.g #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 ENSGT00940000155008.C ENSGT00390000016954 Odontoceti ANCESTRAL SPECIES 5 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022.g #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 ENSGT00940000155008.C ENSGT00390000016954 Odontoceti_a ANCESTRAL SPECIES 5 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022.g #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 ENSGT00940000153769.C ENSGT00940000155008.C Odontoceti_b ANCESTRAL SPECIES 6 ENSGT00390000008815 ENSGT00940000161022.g #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162112 #14 ENSGT00940000154732.q.b.a ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000153769.C ENSGT00940000155008.C ENSGT00390000016954 Monodontidae ANCESTRAL SPECIES 4 ENSGT00390000008815 ENSGT00940000161022.g #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162112 #14 ENSGT00940000154732.q.b.a ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 ENSGT00940000155008.C ENSGT00390000016954 Narwhal MODERN SPECIES 310 VPS52 (ENSMMNG00015012607) ENSMMNG00015012638 #7 HSD17B8 (ENSMMNG00015012658) #8 SLC39A7 (ENSMMNG00015012682) #9 RXRB (ENSMMNG00015012697) #10 COL11A2 (ENSMMNG00015012846) #11 ENSMMNG00015013117 #13 HLA-DOA (ENSMMNG00015013123) #14 ENSMMNG00015013152 BRD2 (ENSMMNG00015013179) #15 HLA-DMA (ENSMMNG00015013256) #17 HLA-DMB (ENSMMNG00015013276) #18 PSMB9 (ENSMMNG00015013288) #19 TAP1 (ENSMMNG00015013311) #20 PSMB8 (ENSMMNG00015013325) #21 TAP2 (ENSMMNG00015013343) #22 HLA-DOB (ENSMMNG00015013519) #23 ENSMMNG00015013533 GCLC (ENSMMNG00015013551) KLHL31 (ENSMMNG00015013579) LRRC1 (ENSMMNG00015013594) MLIP (ENSMMNG00015013648) ENSMMNG00015013701 TINAG (ENSMMNG00015013728) FAM83B (ENSMMNG00015013752) HCRTR2 (ENSMMNG00015013768) GFRAL (ENSMMNG00015013778) HMGCLL1 (ENSMMNG00015013822) BMP5 (ENSMMNG00015013873) COL21A1 (ENSMMNG00015013907) DST (ENSMMNG00015014103) Beluga whale MODERN SPECIES 8 RPS18 (ENSDLEG00000009077) VPS52 (ENSDLEG00000008948) RING1 (ENSDLEG00000008919) #7 HSD17B8 (ENSDLEG00000008819) #8 SLC39A7 (ENSDLEG00000008789) #9 RXRB (ENSDLEG00000008760) #10 COL11A2 (ENSDLEG00000008562) #11 HLA-DOA (ENSDLEG00000008482) #14 ENSDLEG00000008322 BRD2 (ENSDLEG00000008248) #15 HLA-DMA (ENSDLEG00000008210) #17 HLA-DMB (ENSDLEG00000008166) #18 PSMB9 (ENSDLEG00000008143) #19 TAP1 (ENSDLEG00000021996) #20 PSMB8 (ENSDLEG00000021995) #21 TAP2 (ENSDLEG00000021994) #22 ENSDLEG00000021992 GCLC (ENSDLEG00000021991) KLHL31 (ENSDLEG00000021990) ENSDLEG00000021989 LRRC1 (ENSDLEG00000021988) MLIP (ENSDLEG00000021987) ENSDLEG00000021986 TINAG (ENSDLEG00000021985) FAM83B (ENSDLEG00000021984) HCRTR2 (ENSDLEG00000021982) GFRAL (ENSDLEG00000021981) HMGCLL1 (ENSDLEG00000021980) BMP5 (ENSDLEG00000021979) ENSDLEG00000021977 DST (ENSDLEG00000021102) Vaquita MODERN SPECIES 2 VPS52 (ENSPSNG00000020483) RING1 (ENSPSNG00000020433) #7 HSD17B8 (ENSPSNG00000020389) #8 SLC39A7 (ENSPSNG00000020344) #9 RXRB (ENSPSNG00000020305) #10 COL11A2 (ENSPSNG00000019010) #11 ENSPSNG00000018732 #13 HLA-DOA (ENSPSNG00000018672) #14 ENSPSNG00000018620 BRD2 (ENSPSNG00000018549) #15 HLA-DMA (ENSPSNG00000018364) #17 HLA-DMB (ENSPSNG00000018284) #18 PSMB9 (ENSPSNG00000018232) #19 TAP1 (ENSPSNG00000018201) #20 PSMB8 (ENSPSNG00000018160) #21 TAP2 (ENSPSNG00000018051) #22 HLA-DOB (ENSPSNG00000017969) #23 ENSPSNG00000017762 GCLC (ENSPSNG00000017555) KLHL31 (ENSPSNG00000017492) ENSPSNG00000017462 MLIP (ENSPSNG00000017046) TINAG (ENSPSNG00000016830) FAM83B (ENSPSNG00000016755) HCRTR2 (ENSPSNG00000016655) GFRAL (ENSPSNG00000016509) HMGCLL1 (ENSPSNG00000016099) BMP5 (ENSPSNG00000015931) ENSPSNG00000015738 DST (ENSPSNG00000015242) BEND6 (ENSPSNG00000014810) Dolphin MODERN SPECIES 2738 WDR46 (ENSTTRG00000004304) RPS18 (ENSTTRG00000004302) VPS52 (ENSTTRG00000004298) RING1 (ENSTTRG00000004296) #7 HSD17B8 (ENSTTRG00000004294) #8 SLC39A7 (ENSTTRG00000004293) #9 RXRB (ENSTTRG00000004291) #10 COL11A2 (ENSTTRG00000004283) #11 HLA-DOA (ENSTTRG00000004282) #14 BRD2 (ENSTTRG00000004278) #15 HLA-DMA (ENSTTRG00000004277) #17 HLA-DMB (ENSTTRG00000004276) #18 PSMB9 (ENSTTRG00000004272) #19 TAP1 (ENSTTRG00000004264) #20 PSMB8 (ENSTTRG00000004259) #21 TAP2 (ENSTTRG00000004254) #22 HLA-DOB (ENSTTRG00000004249) #23 Sperm whale MODERN SPECIES 9 CUTA (ENSPCTG00005012115) PHF1 (ENSPCTG00005012052) KIFC1 (ENSPCTG00005012002) ENSPCTG00005011963 RING1 (ENSPCTG00005011923) #7 HSD17B8 (ENSPCTG00005011876) #8 SLC39A7 (ENSPCTG00005011775) #9 RXRB (ENSPCTG00005011572) #10 COL11A2 (ENSPCTG00005009478) #11 HLA-DOA (ENSPCTG00005009319) #14 ENSPCTG00005009114 #15 HLA-DMB (ENSPCTG00005009080) #18 PSMB9 (ENSPCTG00005008969) #19 TAP1 (ENSPCTG00005021480) #20 PSMB8 (ENSPCTG00005021456) #21 TAP2 (ENSPCTG00005021415) #22 HLA-DOB (ENSPCTG00005021383) #23 ENSPCTG00005021294 #13 GCLC (ENSPCTG00005021190) KLHL31 (ENSPCTG00005021169) LRRC1 (ENSPCTG00005021134) MLIP (ENSPCTG00005020921) TINAG (ENSPCTG00005020766) FAM83B (ENSPCTG00005020744) HCRTR2 (ENSPCTG00005020624) GFRAL (ENSPCTG00005020543) HMGCLL1 (ENSPCTG00005020290) BMP5 (ENSPCTG00005020211) COL21A1 (ENSPCTG00005020038) DST (ENSPCTG00005015073) BEND6 (ENSPCTG00005014566) Blue whale MODERN SPECIES 2 RPS18 (ENSBMSG00010010743) VPS52 (ENSBMSG00010010756) ENSBMSG00010010769 #7 HSD17B8 (ENSBMSG00010010786) #8 SLC39A7 (ENSBMSG00010010802) #9 RXRB (ENSBMSG00010010818) #10 COL11A2 (ENSBMSG00010010982) #11 ENSBMSG00010011366 #13 HLA-DOA (ENSBMSG00010011380) #14 BRD2 (ENSBMSG00010011399) #15 HLA-DMA (ENSBMSG00010011432) #17 HLA-DMB (ENSBMSG00010011446) #18 PSMB9 (ENSBMSG00010011462) #19 TAP1 (ENSBMSG00010011477) #20 PSMB8 (ENSBMSG00010011493) #21 TAP2 (ENSBMSG00010011505) #22 HLA-DOB (ENSBMSG00010011526) #23 ENSBMSG00010011564 GCLC (ENSBMSG00010011645) KLHL31 (ENSBMSG00010011739) LRRC1 (ENSBMSG00010011758) MLIP (ENSBMSG00010011840) TINAG (ENSBMSG00010011903) FAM83B (ENSBMSG00010011937) HCRTR2 (ENSBMSG00010011945) GFRAL (ENSBMSG00010011956) HMGCLL1 (ENSBMSG00010011994) BMP5 (ENSBMSG00010012051) ENSBMSG00010012065 ENSBMSG00010012074 ENSBMSG00010012133 Pecora ANCESTRAL SPECIES 21 ENSGT00940000161798 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.b ENSGT00940000155371.m.a.a ENSGT00940000154993 #26 ENSGT00940000155371.m.a.b.b ENSGT00940000155371.m.a.b.a ENSGT00940000161821.d ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 Percora_a ANCESTRAL SPECIES 12 ENSGT00940000161798 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Bovidae ANCESTRAL SPECIES 13 ENSGT00940000161798 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.nb #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Caprinae ANCESTRAL SPECIES 16 ENSGT00940000161798 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.nb #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Goat MODERN SPECIES 15 B3GALT4 (ENSCHIG00000013295) RPS18 (ENSCHIG00000025263) VPS52 (ENSCHIG00000023524) RING1 (ENSCHIG00000015685) #7 HSD17B8 (ENSCHIG00000017839) #8 SLC39A7 (ENSCHIG00000024209) #9 RXRB (ENSCHIG00000010266) #10 COL11A2 (ENSCHIG00000012269) #11 HLA-DOA (ENSCHIG00000014302) #14 BRD2 (ENSCHIG00000013946) #15 HLA-DMA (ENSCHIG00000009464) #17 HLA-DMB (ENSCHIG00000026519) #18 PSMB9 (ENSCHIG00000021513) #19 TAP1 (ENSCHIG00000021983) #20 PSMB8 (ENSCHIG00000012829) #21 TAP2 (ENSCHIG00000017732) #22 ENSCHIG00000019853 HLA-DOB (ENSCHIG00000010527) #23 ENSCHIG00000013102 #24 ENSCHIG00000022158 ENSCHIG00000009662 GCLC (ENSCHIG00000013397) KLHL31 (ENSCHIG00000003573) LRRC1 (ENSCHIG00000021002) ENSCHIG00000020109 TINAG (ENSCHIG00000010892) FAM83B (ENSCHIG00000019707) HCRTR2 (ENSCHIG00000000459) GFRAL (ENSCHIG00000008200) HMGCLL1 (ENSCHIG00000017734) BMP5 (ENSCHIG00000010429) Rambouillet Sheep MODERN SPECIES 12 B3GALT4 (ENSOARG00020012594) RPS18 (ENSOARG00020012536) VPS52 (ENSOARG00020012385) RING1 (ENSOARG00020012299) #7 HSD17B8 (ENSOARG00020012212) #8 SLC39A7 (ENSOARG00020012152) #9 RXRB (ENSOARG00020011980) #10 COL11A2 (ENSOARG00020011636) #11 HLA-DOA (ENSOARG00020011582) #14 BRD2 (ENSOARG00020011534) #15 HLA-DMA (ENSOARG00020025286) #17 HLA-DMB (ENSOARG00020025272) #18 ENSOARG00020025249 #19 TAP1 (ENSOARG00020025187) #20 PSMB8 (ENSOARG00020025156) #21 TAP2 (ENSOARG00020025129) #22 HLA-DOB (ENSOARG00020025120) #23 ENSOARG00020025111 #24 ENSOARG00020025100 DYA (ENSOARG00020025089) ENSOARG00020025077 #24 ENSOARG00020025038 ENSOARG00020025022 ENSOARG00020025012 GCLC (ENSOARG00020024970) KLHL31 (ENSOARG00020024949) LRRC1 (ENSOARG00020024930) TINAG (ENSOARG00020024710) ENSOARG00020024682 ENSOARG00020024669 FAM83B (ENSOARG00020024658) Bovinae ANCESTRAL SPECIES 9 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.nb.d #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Bos ANCESTRAL SPECIES 17 ENSGT00390000012691.d ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.nb.d #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Bos_a ANCESTRAL SPECIES 11 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.nb.d #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Wild yak MODERN SPECIES 401 ENSBMUG00000008818 VPS52 (ENSBMUG00000008802) RING1 (ENSBMUG00000008786) #7 HSD17B8 (ENSBMUG00000008752) #8 SLC39A7 (ENSBMUG00000008706) #9 RXRB (ENSBMUG00000008461) #10 COL11A2 (ENSBMUG00000008342) #11 HLA-DOA (ENSBMUG00000008090) #14 BRD2 (ENSBMUG00000008066) #15 HLA-DMA (ENSBMUG00000008047) #17 HLA-DMB (ENSBMUG00000008003) #18 ENSBMUG00000007993 PSMB9 (ENSBMUG00000007982) #19 TAP1 (ENSBMUG00000007967) #20 PSMB8 (ENSBMUG00000007942) #21 TAP2 (ENSBMUG00000007931) #22 HLA-DOB (ENSBMUG00000007908) #23 ENSBMUG00000007890 #24 ENSBMUG00000007873 ENSBMUG00000006036 GCLC (ENSBMUG00000005430) KLHL31 (ENSBMUG00000005354) LRRC1 (ENSBMUG00000005342) Domestic yak MODERN SPECIES 16 WDR46 (ENSBGRG00000017950) B3GALT4 (ENSBGRG00000018285) VPS52 (ENSBGRG00000018459) RING1 (ENSBGRG00000018754) #7 HSD17B8 (ENSBGRG00000018839) #8 SLC39A7 (ENSBGRG00000018980) #9 RXRB (ENSBGRG00000019018) #10 COL11A2 (ENSBGRG00000019137) #11 HLA-DOA (ENSBGRG00000021588) #14 BRD2 (ENSBGRG00000021629) #15 HLA-DMA (ENSBGRG00000021851) #17 HLA-DMB (ENSBGRG00000021922) #18 ENSBGRG00000021991 #19 TAP1 (ENSBGRG00000022060) #20 PSMB8 (ENSBGRG00000022108) #21 TAP2 (ENSBGRG00000022189) #22 HLA-DOB (ENSBGRG00000022347) #23 ENSBGRG00000022408 #24 ENSBGRG00000022452 ENSBGRG00000022508 ENSBGRG00000022571 GCLC (ENSBGRG00000022619) KLHL31 (ENSBGRG00000023447) LRRC1 (ENSBGRG00000023507) MLIP (ENSBGRG00000023693) ENSBGRG00000024111 TINAG (ENSBGRG00000024130) FAM83B (ENSBGRG00000024257) HCRTR2 (ENSBGRG00000024278) GFRAL (ENSBGRG00000024326) HMGCLL1 (ENSBGRG00000024393) Bos_b ANCESTRAL SPECIES 8 ENSGT00390000012691.d ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.b ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b.nb.d #24 ENSGT00940000161821.d.f ENSGT00940000155371.m.b ENSGT00390000011908 ENSGT00940000158352 ENSGT00940000154025.b ENSGT00390000015862 ENSGT00940000161065 ENSGT00940000157889 ENSGT01070000253744.a.a.b.b ENSGT00730000111274 ENSGT00940000159467 ENSGT00940000158644 ENSGT00940000162318 Cow MODERN SPECIES 15 RPS18 (ENSBTAG00000002648) VPS52 (ENSBTAG00000002643) RING1 (ENSBTAG00000018884) #7 HSD17B8 (ENSBTAG00000020927) #8 SLC39A7 (ENSBTAG00000008191) #9 RXRB (ENSBTAG00000000602) #10 COL11A2 (ENSBTAG00000000601) #11 BOLA-DOA (ENSBTAG00000006490) #14 BRD2 (ENSBTAG00000011074) #15 BOLA-DMA (ENSBTAG00000015730) #17 BOLA-DMB (ENSBTAG00000012451) #18 H2B (ENSBTAG00000051545) PSMB9 (ENSBTAG00000008954) #19 TAP1 (ENSBTAG00000008953) #20 PSMB8 (ENSBTAG00000003039) #21 TAP2 (ENSBTAG00000003038) #22 BOLA-DOB (ENSBTAG00000047707) #23 BOLA-DYB (ENSBTAG00000045923) #24 BOLA-DYA (ENSBTAG00000002581) DSB (ENSBTAG00000050757) GCLC (ENSBTAG00000015571) KLHL31 (ENSBTAG00000018167) LRRC1 (ENSBTAG00000017533) MLIP (ENSBTAG00000014581) TINAG (ENSBTAG00000012652) FAM83B (ENSBTAG00000016058) HCRTR2 (ENSBTAG00000011719) GFRAL (ENSBTAG00000012973) HMGCLL1 (ENSBTAG00000025718) BMP5 (ENSBTAG00000012870) ENSBTAG00000046193 Hybrid Bos Indicus MODERN SPECIES 15 RPS18 (ENSBIXG00005006736) VPS52 (ENSBIXG00005014413) RING1 (ENSBIXG00005006128) #7 HSD17B8 (ENSBIXG00005001937) #8 SLC39A7 (ENSBIXG00005014473) #9 RXRB (ENSBIXG00005014520) #10 COL11A2 (ENSBIXG00005014598) #11 HLA-DOA (ENSBIXG00005014640) #14 BRD2 (ENSBIXG00005014704) #15 HLA-DMA (ENSBIXG00005014743) #17 HLA-DMB (ENSBIXG00005014762) #18 ENSBIXG00005014770 PSMB9 (ENSBIXG00005014787) #19 TAP1 (ENSBIXG00005014801) #20 PSMB8 (ENSBIXG00005014824) #21 TAP2 (ENSBIXG00005014872) #22 HLA-DOB (ENSBIXG00005014905) #23 ENSBIXG00005007128 #24 ENSBIXG00005014931 ENSBIXG00005014945 GCLC (ENSBIXG00005015026) KLHL31 (ENSBIXG00005007502) LRRC1 (ENSBIXG00005002222) ENSBIXG00005015134 MLIP (ENSBIXG00005015301) TINAG (ENSBIXG00005015398) FAM83B (ENSBIXG00005015427) HCRTR2 (ENSBIXG00005002278) GFRAL (ENSBIXG00005006745) HMGCLL1 (ENSBIXG00005015587) BMP5 (ENSBIXG00005015628) American bison MODERN SPECIES 3186 RPS18 (ENSBBBG00000003625) VPS52 (ENSBBBG00000003598) RING1 (ENSBBBG00000003692) #7 HSD17B8 (ENSBBBG00000003696) #8 SLC39A7 (ENSBBBG00000014969) #9 RXRB (ENSBBBG00000015089) #10 ENSBBBG00000003746 #11 HLA-DOA (ENSBBBG00000015112) #14 BRD2 (ENSBBBG00000002785) #15 HLA-DMA (ENSBBBG00000015169) #17 HLA-DMB (ENSBBBG00000008914) #18 ENSBBBG00000015200 PSMB9 (ENSBBBG00000003777) #19 TAP1 (ENSBBBG00000015234) #20 PSMB8 (ENSBBBG00000015244) #21 TAP2 (ENSBBBG00000015257) #22 HLA-DOB (ENSBBBG00000015275) #23 ENSBBBG00000015280 #24 ENSBBBG00000015297 ENSBBBG00000015836 GCLC (ENSBBBG00000015998) KLHL31 (ENSBBBG00000002569) LRRC1 (ENSBBBG00000016027) MLIP (ENSBBBG00000016140) TINAG (ENSBBBG00000016191) FAM83B (ENSBBBG00000016205) HCRTR2 (ENSBBBG00000009059) GFRAL (ENSBBBG00000016261) HMGCLL1 (ENSBBBG00000016300) BMP5 (ENSBBBG00000016316) COL21A1 (ENSBBBG00000016434) Yarkand deer MODERN SPECIES 30 RGL2 (ENSCHYG00000004896) PFDN6 (ENSCHYG00000004871) WDR46 (ENSCHYG00000004759) B3GALT4 (ENSCHYG00000004743) RPS18 (ENSCHYG00000004733) VPS52 (ENSCHYG00000004695) RING1 (ENSCHYG00000004682) #7 COL11A2 (ENSCHYG00000004624) #11 HLA-DOA (ENSCHYG00000004561) #14 BRD2 (ENSCHYG00000004539) #15 HLA-DMA (ENSCHYG00000004520) #17 HLA-DMB (ENSCHYG00000004514) #18 ENSCHYG00000004500 #19 TAP1 (ENSCHYG00000004483) #20 PSMB8 (ENSCHYG00000004467) #21 TAP2 (ENSCHYG00000004426) #22 HLA-DOB (ENSCHYG00000004391) #23 ENSCHYG00000004368 #24 ENSCHYG00000004358 ENSCHYG00000004336 GCLC (ENSCHYG00000004293) KLHL31 (ENSCHYG00000004258) LRRC1 (ENSCHYG00000004239) TINAG (ENSCHYG00000004199) MLIP (ENSCHYG00000004113) FAM83B (ENSCHYG00000004082) HCRTR2 (ENSCHYG00000004073) GFRAL (ENSCHYG00000004059) ENSCHYG00000003978 BMP5 (ENSCHYG00000003939) COL21A1 (ENSCHYG00000003914) Laurasiatheria_b ANCESTRAL SPECIES 7 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000160997 #28 ENSGT00940000154993 #26 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 ENSGT00940000162975 #37 ENSGT00940000155779.a.b ENSGT00940000162382 ENSGT00920000149187 ENSGT00940000160798 ENSGT00940000155565 ENSGT00940000158338 Carnivora ANCESTRAL SPECIES 4 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000154993 #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 Caniformia ANCESTRAL SPECIES 3 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000161847 ENSGT00940000154993 #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 #30 ENSGT00940000162450.p ENSGT00940000163287 #31 ENSGT00390000002471 #32 Caniformia_b ANCESTRAL SPECIES 6 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000154993 #26 ENSGT00940000160997 #28 ENSGT00940000155371.n ENSGT00940000161847 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 #30 ENSGT00940000162450.p ENSGT00940000163287 #31 ENSGT00390000002471 #32 Ursidae ANCESTRAL SPECIES 37 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00950000183198.c.a.b.b.j ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000161847 ENSGT00940000160997 #28 ENSGT00940000162484.d #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000153527.c.c.b ENSGT00530000064839 #30 ENSGT00940000162450.p.a ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 Ursus ANCESTRAL SPECIES 53 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00950000183198.c.a.b.b.j ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000160997 #28 ENSGT00940000162484.d #29 Polar bear MODERN SPECIES 184 RING1 (ENSUMAG00000012543) #7 HSD17B8 (ENSUMAG00000012548) #8 SLC39A7 (ENSUMAG00000012560) #9 RXRB (ENSUMAG00000012569) #10 ENSUMAG00000012592 #11 ENSUMAG00000012616 #12 HLA-DOA (ENSUMAG00000012626) #14 ENSUMAG00000012634 #15 ENSUMAG00000012662 #15 HLA-DMA (ENSUMAG00000012683) #17 HLA-DMB (ENSUMAG00000012688) #18 ENSUMAG00000012692 PSMB9 (ENSUMAG00000012694) #19 TAP1 (ENSUMAG00000012701) #20 PSMB8 (ENSUMAG00000012731) #21 TAP2 (ENSUMAG00000012745) #22 HLA-DOB (ENSUMAG00000012747) #23 ENSUMAG00000012755 ENSUMAG00000012761 HLA-DQB2 (ENSUMAG00000012766) #24 ENSUMAG00000012768 ENSUMAG00000012771 HLA-DRA (ENSUMAG00000012775) #28 ENSUMAG00000012781 #29 American black bear MODERN SPECIES 3108 PSMB9 (ENSUAMG00000013935) #19 TAP1 (ENSUAMG00000013932) #20 PSMB8 (ENSUAMG00000013929) #21 TAP2 (ENSUAMG00000013187) #22 HLA-DOB (ENSUAMG00000013172) #23 ENSUAMG00000013161 #24 Giant Panda MODERN SPECIES 15 VPS52 (ENSAMEG00000001640) RING1 (ENSAMEG00000001680) #7 HSD17B8 (ENSAMEG00000001698) #8 SLC39A7 (ENSAMEG00000001707) #9 RXRB (ENSAMEG00000001719) #10 COL11A2 (ENSAMEG00000001744) #11 ENSAMEG00000001900 #13 HLA-DPA1 (ENSAMEG00000001901) #12 HLA-DOA (ENSAMEG00000001908) #14 BRD2 (ENSAMEG00000001926) #15 HLA-DMB (ENSAMEG00000001952) #18 ENSAMEG00000027435 PSMB9 (ENSAMEG00000001961) #19 TAP1 (ENSAMEG00000001976) #20 PSMB8 (ENSAMEG00000002026) #21 TAP2 (ENSAMEG00000002044) #22 HLA-DOB (ENSAMEG00000029901) #23 ENSAMEG00000026802 #24 ENSAMEG00000024677 ENSAMEG00000002342 HLA-DRA (ENSAMEG00000002390) #28 BTNL2 (ENSAMEG00000002403) #29 ENSAMEG00000002462 ENSAMEG00000002434 ENSAMEG00000024700 #30 ENSAMEG00000002606 NOTCH4 (ENSAMEG00000002549) #31 GPSM3 (ENSAMEG00000002539) #32 PBX2 (ENSAMEG00000002519) #33 AGER (ENSAMEG00000002492) #34 RNF5 (ENSAMEG00000002477) #35 Mustelinae ANCESTRAL SPECIES 65 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 American mink MODERN SPECIES 609 HSD17B8 (ENSNVIG00000006535) #8 SLC39A7 (ENSNVIG00000006519) #9 RXRB (ENSNVIG00000006480) #10 COL11A2 (ENSNVIG00000006062) #11 ENSNVIG00000004899 #13 HLA-DPA1 (ENSNVIG00000004863) #12 HLA-DOA (ENSNVIG00000004843) #14 BRD2 (ENSNVIG00000004773) #15 HLA-DMA (ENSNVIG00000004747) #17 HLA-DMB (ENSNVIG00000004727) #18 PSMB9 (ENSNVIG00000004695) #19 TAP1 (ENSNVIG00000004678) #20 PSMB8 (ENSNVIG00000004658) #21 TAP2 (ENSNVIG00000004605) #22 HLA-DOB (ENSNVIG00000004582) #23 Ferret MODERN SPECIES 318 RING1 (ENSMPUG00000002279) #7 SLC39A7 (ENSMPUG00000002276) #9 RXRB (ENSMPUG00000002273) #10 COL11A2 (ENSMPUG00000001968) #11 ENSMPUG00000001964 #13 HLA-DPA1 (ENSMPUG00000001961) #12 ENSMPUG00000001959 HLA-DOA (ENSMPUG00000001958) #14 BRD2 (ENSMPUG00000001955) #15 ENSMPUG00000001954 HLA-DMA (ENSMPUG00000001944) #17 HLA-DMB (ENSMPUG00000001943) #18 PSMB9 (ENSMPUG00000001940) #19 TAP1 (ENSMPUG00000001935) #20 PSMB8 (ENSMPUG00000001933) #21 ENSMPUG00000001931 #22 ENSMPUG00000001924 #23 Canidae ANCESTRAL SPECIES 6 ENSGT00390000008815.g.b ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000162450.p ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 ENSGT00940000162975 #37 Canis_lupus ANCESTRAL SPECIES 11 ENSGT00390000012691.c.b ENSGT00390000008815.g.b ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00940000162450.o ENSGT00940000162450.p ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 Dog MODERN SPECIES 3 B3GALT4 (ENSCAFG00845020962) RPS18 (ENSCAFG00845020845) VPS52 (ENSCAFG00845020730) RING1 (ENSCAFG00845020668) #7 HSD17B8 (ENSCAFG00845020603) #8 SLC39A7 (ENSCAFG00845020536) #9 RXRB (ENSCAFG00845020447) #10 COL11A2 (ENSCAFG00845019587) #11 ENSCAFG00845019114 #13 DLA-DOA (ENSCAFG00845018933) #14 BRD2 (ENSCAFG00845018726) #15 DLA-DMA (ENSCAFG00845018613) #17 DLA-DMB (ENSCAFG00845018536) #18 PSMB9 (ENSCAFG00845018485) #19 PSMB8 (ENSCAFG00845018353) #20 TAP2 (ENSCAFG00845017879) #22 HLA-DQB2 (ENSCAFG00845017781) #24 DLA-DQA1 (ENSCAFG00845017728) DLA-DRA (ENSCAFG00845017467) #28 ENSCAFG00845017367 BTNL2 (ENSCAFG00845017222) #29 ENSCAFG00845017104 ENSCAFG00845016990 ENSCAFG00845016861 ENSCAFG00845016831 ENSCAFG00845016762 ENSCAFG00845016724 GPSM3 (ENSCAFG00845016471) #32 PBX2 (ENSCAFG00845016393) #33 AGER (ENSCAFG00845014982) #34 RNF5 (ENSCAFG00845014858) #35 Dingo MODERN SPECIES 276 ENSCAFG00020003224 RING1 (ENSCAFG00020003221) #7 HSD17B8 (ENSCAFG00020003175) #8 SLC39A7 (ENSCAFG00020003166) #9 RXRB (ENSCAFG00020003098) #10 ENSCAFG00020003093 #11 ENSCAFG00020003072 #11 ENSCAFG00020002592 #13 HLA-DOA (ENSCAFG00020002545) #14 BRD2 (ENSCAFG00020002542) #15 HLA-DMA (ENSCAFG00020002536) #17 HLA-DMB (ENSCAFG00020002532) #18 PSMB9 (ENSCAFG00020002528) #19 TAP1 (ENSCAFG00020002523) #20 PSMB8 (ENSCAFG00020002521) #21 TAP2 (ENSCAFG00020001827) #22 HLA-DOB (ENSCAFG00020001693) #23 ENSCAFG00020001685 #24 HLA-DQB1 (ENSCAFG00020001679) #24 ENSCAFG00020001673 ENSCAFG00020001671 HLA-DRA (ENSCAFG00020001663) #28 ENSCAFG00020001656 BTNL2 (ENSCAFG00020001628) #29 ENSCAFG00020001614 ENSCAFG00020001606 ENSCAFG00020001600 ENSCAFG00020001586 ENSCAFG00020001581 ENSCAFG00020001552 GPSM3 (ENSCAFG00020001306) #32 Red fox MODERN SPECIES 7 RPS18 (ENSVVUG00000025443) ENSVVUG00000025286 RING1 (ENSVVUG00000025271) #7 HSD17B8 (ENSVVUG00000025268) #8 SLC39A7 (ENSVVUG00000025265) #9 RXRB (ENSVVUG00000025262) #10 ENSVVUG00000025174 #13 HLA-DPA1 (ENSVVUG00000025137) #12 HLA-DOA (ENSVVUG00000025133) #14 BRD2 (ENSVVUG00000025130) #15 HLA-DMA (ENSVVUG00000025127) #17 HLA-DMB (ENSVVUG00000025122) #18 PSMB9 (ENSVVUG00000025119) #19 TAP1 (ENSVVUG00000025116) #20 PSMB8 (ENSVVUG00000025115) #21 TAP2 (ENSVVUG00000025111) #22 HLA-DOB (ENSVVUG00000025078) #23 ENSVVUG00000025071 #24 Felidae ANCESTRAL SPECIES 5 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762.cc #11 ENSGT00940000162390.q #13 ENSGT00940000162390.p #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.n.a.b ENSGT00940000155371.n.a.a ENSGT00940000154993 #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450.q ENSGT00940000163287.b #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 Panthera ANCESTRAL SPECIES 7 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762.cc #11 ENSGT00940000162390.p #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.n.a.b ENSGT00940000155371.n.a.a ENSGT00940000154993.a.a #26 ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079 ENSGT00530000064839 #30 ENSGT00940000162450.q ENSGT00940000163287.b #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 Tiger MODERN SPECIES 415 RING1 (ENSPTIG00000005545) #7 HSD17B8 (ENSPTIG00000005554) #8 SLC39A7 (ENSPTIG00000005581) #9 RXRB (ENSPTIG00000005607) #10 COL11A2 (ENSPTIG00000005735) #11 HLA-DPB1 (ENSPTIG00000005931) #13 HLA-DPA1 (ENSPTIG00000005948) #12 HLA-DOA (ENSPTIG00000005964) #14 BRD2 (ENSPTIG00000005977) #15 ENSPTIG00000006002 #16 HLA-DMA (ENSPTIG00000006011) #17 HLA-DMB (ENSPTIG00000006035) #18 PSMB9 (ENSPTIG00000006050) #19 TAP1 (ENSPTIG00000006078) #20 PSMB8 (ENSPTIG00000006141) #21 TAP2 (ENSPTIG00000006162) #22 HLA-DOB (ENSPTIG00000006225) #23 ENSPTIG00000006266 ENSPTIG00000006308 HLA-DRA (ENSPTIG00000006439) #28 ENSPTIG00000006461 #26 BTNL2 (ENSPTIG00000006701) #29 ENSPTIG00000006731 ENSPTIG00000006752 ENSPTIG00000006805 ENSPTIG00000006816 NOTCH4 (ENSPTIG00000006842) #31 GPSM3 (ENSPTIG00000006883) #32 PBX2 (ENSPTIG00000006899) #33 AGER (ENSPTIG00000006921) #34 RNF5 (ENSPTIG00000007005) #35 Panthera_a ANCESTRAL SPECIES 4 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762.cc #11 ENSGT00940000162390.p #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.n.a.a lion MODERN SPECIES 5 RING1 (ENSPLOG00000009313) #7 HSD17B8 (ENSPLOG00000009241) #8 SLC39A7 (ENSPLOG00000009206) #9 RXRB (ENSPLOG00000009094) #10 COL11A2 (ENSPLOG00000007928) #11 ENSPLOG00000007166 #13 HLA-DPA1 (ENSPLOG00000006949) #12 HLA-DOA (ENSPLOG00000006926) #14 BRD2 (ENSPLOG00000006871) #15 HLA-DMA (ENSPLOG00000006786) #17 HLA-DMB (ENSPLOG00000006753) #18 ENSPLOG00000006735 PSMB9 (ENSPLOG00000006713) #19 TAP1 (ENSPLOG00000006688) #20 PSMB8 (ENSPLOG00000006662) #21 TAP2 (ENSPLOG00000006623) #22 HLA-DOB (ENSPLOG00000006603) #23 ENSPLOG00000006575 leopard MODERN SPECIES 30 HSD17B8 (ENSPPRG00000008960) #8 SLC39A7 (ENSPPRG00000009227) #9 RXRB (ENSPPRG00000010222) #10 COL11A2 (ENSPPRG00000001194) #11 HLA-DPB1 (ENSPPRG00000002022) #13 HLA-DPA1 (ENSPPRG00000002267) #12 HLA-DOA (ENSPPRG00000002484) #14 ENSPPRG00000002715 #15 ENSPPRG00000003003 #15 ENSPPRG00000003175 #16 HLA-DMA (ENSPPRG00000004582) #17 HLA-DMB (ENSPPRG00000004964) #18 PSMB9 (ENSPPRG00000008776) #19 TAP1 (ENSPPRG00000009806) #20 PSMB8 (ENSPPRG00000010024) #21 TAP2 (ENSPPRG00000010234) #22 HLA-DOB (ENSPPRG00000010507) #23 Cat DUPLICATION Cat MODERN SPECIES 236 ENSFCAG00000046098 #9 ENSFCAG00000050544 ENSFCAG00000042526 #10 ENSFCAG00000046454 #11 ENSFCAG00000047214 #11 ENSFCAG00000041523 #13 ENSFCAG00000012247 #12 ENSFCAG00000009697 #14 ENSFCAG00000009696 #15 ENSFCAG00000041486 #17 ENSFCAG00000040910 #18 ENSFCAG00000051485 ENSFCAG00000030632 #19 ENSFCAG00000042806 #20 ENSFCAG00000023131 #21 ENSFCAG00000035701 #22 ENSFCAG00000041575 #23 ENSFCAG00000046253 ENSFCAG00000029158 #28 BTNL2 (ENSFCAG00000001685) #29 ENSFCAG00000028529 ENSFCAG00000024834 ENSFCAG00000045335 ENSFCAG00000037191 GPSM3 (ENSFCAG00000016212) #32 PBX2 (ENSFCAG00000004530) #33 AGER (ENSFCAG00000004529) #34 RNF5 (ENSFCAG00000004528) #35 AGPAT1 (ENSFCAG00000035621) #36 EGFL8 (ENSFCAG00000022700) #37 PPT2 (ENSFCAG00000004526) Cat MODERN SPECIES 236 ENSFCAG00000004010 #7 ENSFCAG00000043560 ENSFCAG00000006984 #9 ENSFCAG00000006981 #10 COL11A2 (ENSFCAG00000004005) #11 ENSFCAG00000041258 #13 ENSFCAG00000044012 #12 ENSFCAG00000042732 #14 ENSFCAG00000042841 #15 ENSFCAG00000009442 #17 ENSFCAG00000045369 #18 ENSFCAG00000050701 ENSFCAG00000044069 #19 ENSFCAG00000042456 #20 ENSFCAG00000043821 #21 ENSFCAG00000045700 #22 ENSFCAG00000009202 ENSFCAG00000040474 #23 ENSFCAG00000041443 ENSFCAG00000052131 ENSFCAG00000053744 DAXX (ENSFCAG00000004020) ENSFCAG00000049571 ENSFCAG00000043390 ENSFCAG00000029182 ENSFCAG00000028199 ENSFCAG00000051171 ENSFCAG00000052529 ENSFCAG00000041843 VPS52 (ENSFCAG00000004011) ENSFCAG00000041942 #7 Laurasiatheria_c ANCESTRAL SPECIES 6 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000161821.c.a ENSGT00940000155371.n ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079.d ENSGT00530000064839 #30 ENSGT00940000162450 ENSGT00940000163287 #31 ENSGT00390000002471 #32 ENSGT00940000160293 #33 ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 Chiroptera ANCESTRAL SPECIES 3 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000162892 #25 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.n ENSGT00940000160997 #28 ENSGT00940000162484.f #29 ENSGT00940000164957 ENSGT00940000162079.d Megabat MODERN SPECIES 3233 PSMB9 (ENSPVAG00000002804) #19 TAP1 (ENSPVAG00000002802) #20 PSMB8 (ENSPVAG00000002800) #21 TAP2 (ENSPVAG00000002794) #22 HLA-DOB (ENSPVAG00000002791) #23 Microchiroptera ANCESTRAL SPECIES 4 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498 #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000162892 #25 ENSGT00940000154723.b #24 ENSGT00940000161821.d ENSGT00940000155371.n ENSGT00940000160997 #28 ENSGT00940000162484.f #29 ENSGT00940000164957 ENSGT00940000162079.d Greater horseshoe bat MODERN SPECIES 21 ENSRFEG00010014573 VPS52 (ENSRFEG00010014510) RING1 (ENSRFEG00010014424) #7 HSD17B8 (ENSRFEG00010014277) #8 SLC39A7 (ENSRFEG00010014223) #9 RXRB (ENSRFEG00010014125) #10 COL11A2 (ENSRFEG00010013940) #11 HLA-DPB1 (ENSRFEG00010013529) #13 HLA-DPA1 (ENSRFEG00010013424) #12 HLA-DOA (ENSRFEG00010013359) #14 BRD2 (ENSRFEG00010013276) #15 ENSRFEG00010012948 #17 PSMB9 (ENSRFEG00010012800) #19 TAP1 (ENSRFEG00010012779) #20 PSMB8 (ENSRFEG00010012709) #21 TAP2 (ENSRFEG00010012594) #22 HLA-DOB (ENSRFEG00010012534) #23 ENSRFEG00010012490 ENSRFEG00010012374 ENSRFEG00010010765 #24 ENSRFEG00010010549 HLA-DQB2 (ENSRFEG00010010410) #24 ENSRFEG00010010287 ENSRFEG00010010222 HLA-DRA (ENSRFEG00010010177) #28 ENSRFEG00010010130 BTNL2 (ENSRFEG00010004871) #29 ENSRFEG00010004851 ENSRFEG00010004842 ENSRFEG00010004830 ENSRFEG00010004789 Microbat MODERN SPECIES 1885 HLA-DMA (ENSMLUG00000005494) #17 HLA-DMB (ENSMLUG00000009907) #18 ENSMLUG00000026627 PSMB9 (ENSMLUG00000013890) #19 TAP1 (ENSMLUG00000013880) #20 PSMB8 (ENSMLUG00000013876) #21 TAP2 (ENSMLUG00000013870) #22 Equus ANCESTRAL SPECIES 10 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00860000136081 #16 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000155371.n.g.b ENSGT00940000155371.n.h ENSGT00940000154723.b.y #24 ENSGT00940000161821.c.b ENSGT00940000154723.b.z.a #24 ENSGT00940000161821.c.a ENSGT00940000155371.n.g.a ENSGT00940000160997 #28 ENSGT00940000162484 #29 ENSGT00940000164957 ENSGT00940000162079.d ENSGT00860000135184.d.b.a ENSGT00980000198488.m.a.a.b.a.a.b.c.b ENSGT00530000064839 #30 Horse MODERN SPECIES 12 B3GALT4 (ENSECAG00000052593) VPS52 (ENSECAG00000019702) RING1 (ENSECAG00000013736) #7 HSD17B8 (ENSECAG00000058465) #8 SLC39A7 (ENSECAG00000004794) #9 RXRB (ENSECAG00000023041) #10 COL11A2 (ENSECAG00000029028) #11 HLA-DOA (ENSECAG00000006603) #14 BRD2 (ENSECAG00000012089) #15 ENSECAG00000042051 #16 HLA-DMA (ENSECAG00000003669) #17 HLA-DMB (ENSECAG00000021796) #18 TAP1 (ENSECAG00000022610) #20 PSMB8 (ENSECAG00000018887) #21 PSMB9 (ENSECAG00000016898) #19 TAP2 (ENSECAG00000007152) #22 HLA-DOB (ENSECAG00000020976) #23 ENSECAG00000012933 ENSECAG00000020358 ENSECAG00000052533 #24 ENSECAG00000009142 ENSECAG00000017143 #24 Eqca-DQA1 (ENSECAG00000024259) ENSECAG00000022072 HLA-DRA (ENSECAG00000012660) #28 ENSECAG00000033265 BTNL2 (ENSECAG00000011452) #29 ENSECAG00000016943 ENSECAG00000014398 ENSECAG00000038583 ENSECAG00000056152 Donkey MODERN SPECIES 28 B3GALT4 (ENSEASG00005035058) RPS18 (ENSEASG00005020817) VPS52 (ENSEASG00005020809) RING1 (ENSEASG00005020805) #7 SLC39A7 (ENSEASG00005020798) #9 RXRB (ENSEASG00005020792) #10 COL11A2 (ENSEASG00005030115) #11 HLA-DOA (ENSEASG00005020773) #14 BRD2 (ENSEASG00005020770) #15 ENSEASG00005032605 #16 HLA-DMA (ENSEASG00005020764) #17 HLA-DMB (ENSEASG00005020759) #18 PSMB9 (ENSEASG00005020754) #19 TAP1 (ENSEASG00005020750) #20 PSMB8 (ENSEASG00005020748) #21 TAP2 (ENSEASG00005020743) #22 ENSEASG00005020739 #23 ENSEASG00005017377 ENSEASG00005033717 #23 ENSEASG00005014836 ENSEASG00005020693 ENSEASG00005031301 HLA-DQB1 (ENSEASG00005012362) #24 ENSEASG00005003380 #24 ENSEASG00005006994 ENSEASG00005023862 ENSEASG00005020694 BTNL2 (ENSEASG00005037724) #29 ENSEASG00005035285 ENSEASG00005037345 ENSEASG00005031262 Atlantogenata ANCESTRAL SPECIES 3 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498.r #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000154993 #26 ENSGT00940000155371 ENSGT00940000160997 #28 ENSGT00940000162484 #29 Afrotheria ANCESTRAL SPECIES 83 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498.r #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000160997.m #28 ENSGT00940000162484 #29 Afrotheria_a ANCESTRAL SPECIES 84 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498.r #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000162353 #23 ENSGT00940000154723.b #24 ENSGT00940000161821 ENSGT00940000160997.m #28 ENSGT00940000162484 #29 Hyrax MODERN SPECIES 7111 PSMB9 (ENSPCAG00000016827) #19 TAP1 (ENSPCAG00000016767) #20 PSMB8 (ENSPCAG00000016741) #21 TAP2 (ENSPCAG00000016678) #22 Elephant MODERN SPECIES 14 ENSLAFG00000032173 VPS52 (ENSLAFG00000004472) RING1 (ENSLAFG00000021706) #7 HSD17B8 (ENSLAFG00000030087) #8 SLC39A7 (ENSLAFG00000002138) #9 RXRB (ENSLAFG00000002141) #10 COL11A2 (ENSLAFG00000009548) #11 ENSLAFG00000029575 #13 HLA-DOA (ENSLAFG00000014863) #14 BRD2 (ENSLAFG00000016104) #15 HLA-DMA (ENSLAFG00000005738) #17 HLA-DMB (ENSLAFG00000004768) #18 PSMB9 (ENSLAFG00000025736) #19 TAP1 (ENSLAFG00000003214) #20 PSMB8 (ENSLAFG00000003213) #21 TAP2 (ENSLAFG00000028298) #22 HLA-DOB (ENSLAFG00000004052) #23 ENSLAFG00000029261 #24 ENSLAFG00000030016 #24 ENSLAFG00000018482 #24 ENSLAFG00000031292 ENSLAFG00000001026 #28 BTNL2 (ENSLAFG00000001025) #29 Tenrec DUPLICATION Tenrec MODERN SPECIES 8432 PSMB9 (ENSETEG00000013343) #19 ENSETEG00000013337 #20 PSMB8 (ENSETEG00000013333) #21 ENSETEG00000013330 #22 HLA-DOB (ENSETEG00000013327) #23 ENSETEG00000013324 #22 Tenrec MODERN SPECIES 8432 ENSETEG00000013324 #22 HLA-DOB (ENSETEG00000013327) #23 ENSETEG00000013330 #22 PSMB8 (ENSETEG00000013333) #21 ENSETEG00000013337 #20 PSMB9 (ENSETEG00000013343) #19 Xenarthra ANCESTRAL SPECIES 66 ENSGT00390000012691.c.b ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000162390 #13 ENSGT00940000162498.r #12 ENSGT00940000162112 #14 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 Armadillo MODERN SPECIES 4056 ENSDNOG00000041084 RING1 (ENSDNOG00000019606) #7 SLC39A7 (ENSDNOG00000015430) #9 RXRB (ENSDNOG00000015431) #10 COL11A2 (ENSDNOG00000047004) #11 ENSDNOG00000037384 #13 ENSDNOG00000045287 #13 HLA-DPA1 (ENSDNOG00000043328) #12 HLA-DOA (ENSDNOG00000030617) #14 BRD2 (ENSDNOG00000006186) #15 HLA-DMA (ENSDNOG00000002005) #17 HLA-DMB (ENSDNOG00000045752) #18 PSMB9 (ENSDNOG00000035353) #19 TAP1 (ENSDNOG00000024030) #20 PSMB8 (ENSDNOG00000045248) #21 TAP2 (ENSDNOG00000034243) #22 Marsupialia DUPLICATION Marsupialia ANCESTRAL SPECIES 2 ENSGT00390000008815 ENSGT01100000263519.A.b.a.b ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00980000198488.n.y.b.b ENSGT00980000198488.n.y.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499.k #22 ENSGT01100000263562.b.a.a.c.b ENSGT00940000160499.l #22 ENSGT00980000198488.n.y.b.a ENSGT00950000183127.b.c.a ENSGT00940000161847.k ENSGT00940000154723.a.a ##24 ENSGT00940000160997 #28 ENSGT00940000164042.b ENSGT00940000162498 #12 ENSGT00950000183127.b.c.b ENSGT00940000162079.g.b ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 ENSGT00940000162975 #37 Marsupialia_b ANCESTRAL SPECIES 55 ENSGT00980000198488.n.y.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293.kb #21 ENSGT00940000160499.k #22 ENSGT00980000198488.n.y.b.a ENSGT01100000263562.b.a.a.c.b Diprotodontia ANCESTRAL SPECIES 113 ENSGT00980000198488.n.y.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293.kb #21 ENSGT00940000160499.k #22 ENSGT00980000198488.n.y.b.a ENSGT01100000263562.b.a.a.c.b Diprotodontia_a ANCESTRAL SPECIES 111 ENSGT00980000198488.n.y.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293.kb #21 ENSGT00940000160499.k #22 ENSGT00980000198488.n.y.b.a ENSGT01100000263562.b.a.a.c.b Common wonbat DUPLICATION Common wonbat DUPLICATION Common wonbat MODERN SPECIES 1047 ENSVURG00010015107 RGL2 (ENSVURG00010015079) PFDN6 (ENSVURG00010015063) WDR46 (ENSVURG00010015047) B3GALT4 (ENSVURG00010015041) RPS18 (ENSVURG00010015031) VPS52 (ENSVURG00010015001) RING1 (ENSVURG00010014982) #7 ENSVURG00010014948 RXRB (ENSVURG00010014890) #10 ENSVURG00010014883 #11 BRD2 (ENSVURG00010014869) #15 HLA-DMA (ENSVURG00010014861) #17 HLA-DMB (ENSVURG00010014847) #18 ENSVURG00010014320 #20 ENSVURG00010014277 #22 OSCAR (ENSVURG00010014253) ENSVURG00010014250 ENSVURG00010012584 ENSVURG00010012508 #19 ENSVURG00010012252 #20 PSMB8 (ENSVURG00010012199) #21 ENSVURG00010006738 ENSVURG00010006484 ENSVURG00010006462 #22 ENSVURG00010006448 ENSVURG00010006216 #22 ENSVURG00010006194 ##24 ENSVURG00010006184 ENSVURG00010006135 ENSVURG00010006097 Common wonbat MODERN SPECIES 1047 AGPAT1 (ENSVURG00010005367) #36 RNF5 (ENSVURG00010005389) #35 AGER (ENSVURG00010005404) #34 PBX2 (ENSVURG00010005430) #33 ENSVURG00010005483 ENSVURG00010005524 ENSVURG00010005536 ENSVURG00010005576 #12 ENSVURG00010006002 HLA-DRA (ENSVURG00010006059) #28 ENSVURG00010006071 ENSVURG00010006097 ENSVURG00010006135 ENSVURG00010006184 ENSVURG00010006194 ##24 ENSVURG00010006216 #22 ENSVURG00010006448 ENSVURG00010006462 #22 ENSVURG00010006484 ENSVURG00010006738 PSMB8 (ENSVURG00010012199) #21 ENSVURG00010012252 #20 ENSVURG00010012508 #19 ENSVURG00010012584 ENSVURG00010014250 OSCAR (ENSVURG00010014253) ENSVURG00010014277 #22 ENSVURG00010014320 #20 HLA-DMB (ENSVURG00010014847) #18 HLA-DMA (ENSVURG00010014861) #17 BRD2 (ENSVURG00010014869) #15 Common wonbat MODERN SPECIES 1047 RXRB (ENSVURG00010014890) #10 ENSVURG00010014883 #11 BRD2 (ENSVURG00010014869) #15 HLA-DMA (ENSVURG00010014861) #17 HLA-DMB (ENSVURG00010014847) #18 ENSVURG00010014320 #20 ENSVURG00010014277 #22 OSCAR (ENSVURG00010014253) ENSVURG00010014250 ENSVURG00010012584 ENSVURG00010012508 #19 ENSVURG00010012252 #20 PSMB8 (ENSVURG00010012199) #21 ENSVURG00010006738 ENSVURG00010006484 ENSVURG00010006462 #22 ENSVURG00010006448 ENSVURG00010006216 #22 ENSVURG00010006194 ##24 ENSVURG00010006184 ENSVURG00010006135 ENSVURG00010006097 ENSVURG00010006071 HLA-DRA (ENSVURG00010006059) #28 ENSVURG00010006002 ENSVURG00010005576 #12 ENSVURG00010005536 ENSVURG00010005524 ENSVURG00010005483 PBX2 (ENSVURG00010005430) #33 AGER (ENSVURG00010005404) #34 koala DUPLICATION koala MODERN SPECIES 254 ENSPCIG00000036920 RING1 (ENSPCIG00000002578) #7 HSD17B8 (ENSPCIG00000002203) #8 ENSPCIG00000002180 RXRB (ENSPCIG00000002153) #10 COL11A2 (ENSPCIG00000031838) #11 BRD2 (ENSPCIG00000002017) #15 HLA-DMA (ENSPCIG00000001972) #17 Phci-DMB (ENSPCIG00000019944) #18 ENSPCIG00000036230 PSMB9 (ENSPCIG00000022552) #19 ENSPCIG00000034298 #20 ENSPCIG00000008486 #21 ENSPCIG00000001956 #22 ENSPCIG00000001943 ENSPCIG00000034822 ENSPCIG00000005091 #20 ENSPCIG00000001868 #21 ENSPCIG00000001804 ENSPCIG00000001719 ENSPCIG00000009007 #22 ENSPCIG00000008629 #20 ENSPCIG00000005151 ENSPCIG00000008365 ##24 Phci-DBA (ENSPCIG00000018833) Phci-DAA (ENSPCIG00000018830) #28 ENSPCIG00000018822 ENSPCIG00000018816 #13 ENSPCIG00000018813 koala MODERN SPECIES 254 COL11A2 (ENSPCIG00000031838) #11 BRD2 (ENSPCIG00000002017) #15 HLA-DMA (ENSPCIG00000001972) #17 Phci-DMB (ENSPCIG00000019944) #18 ENSPCIG00000036230 PSMB9 (ENSPCIG00000022552) #19 ENSPCIG00000034298 #20 ENSPCIG00000008486 #21 ENSPCIG00000001956 #22 ENSPCIG00000001943 ENSPCIG00000034822 ENSPCIG00000005091 #20 ENSPCIG00000001868 #21 ENSPCIG00000001804 ENSPCIG00000001719 ENSPCIG00000009007 #22 ENSPCIG00000008629 #20 ENSPCIG00000005151 ENSPCIG00000008365 ##24 Phci-DBA (ENSPCIG00000018833) Phci-DAA (ENSPCIG00000018830) #28 ENSPCIG00000018822 ENSPCIG00000018816 #13 ENSPCIG00000018813 ENSPCIG00000018812 ENSPCIG00000018808 GPSM3 (ENSPCIG00000018807) #32 PBX2 (ENSPCIG00000033599) #33 AGER (ENSPCIG00000018805) #34 RNF5 (ENSPCIG00000018804) #35 AGPAT1 (ENSPCIG00000018803) #36 Wallaby MODERN SPECIES 10054 ENSMEUG00000007390 #19 TAP1 (ENSMEUG00000007342) #20 PSMB8 (ENSMEUG00000007328) #21 ENSMEUG00000007297 #22 Tasmanian devil MODERN SPECIES 3 ENSSHAG00000012955 MAPK14 (ENSSHAG00000001726) MAPK13 (ENSSHAG00000005652) BRPF3 (ENSSHAG00000006679) PNPLA1 (ENSSHAG00000026837) ETV7 (ENSSHAG00000008985) KCTD20 (ENSSHAG00000009892) STK38 (ENSSHAG00000010192) SRSF3 (ENSSHAG00000028024) CDKN1A (ENSSHAG00000027220) ENSSHAG00000030398 CPNE5 (ENSSHAG00000012120) PPIL1 (ENSSHAG00000029952) ENSSHAG00000013471 ENSSHAG00000013929 ENSSHAG00000001057 #22 ENSSHAG00000022544 ENSSHAG00000023399 #19 ENSSHAG00000024693 #20 ENSSHAG00000030279 #21 ENSSHAG00000029854 ENSSHAG00000023605 ENSSHAG00000024141 ENSSHAG00000024812 ENSSHAG00000014096 FGD2 (ENSSHAG00000014314) ENSSHAG00000031469 ENSSHAG00000026123 ENSSHAG00000025311 TBC1D22B (ENSSHAG00000015386) RNF8 (ENSSHAG00000015696) Opossum DUPLICATION Opossum MODERN SPECIES 1 RING1 (ENSMODG00000014169) #7 HSD17B8 (ENSMODG00000014232) #8 ENSMODG00000014239 RXRB (ENSMODG00000014249) #10 BRD2 (ENSMODG00000014295) #15 ENSMODG00000029544 #17 HLA-DMB (ENSMODG00000014310) #18 ENSMODG00000039629 MODO-UK (ENSMODG00000014336) ENSMODG00000050241 PSMB9 (ENSMODG00000046870) #19 TAP1 (ENSMODG00000014352) #20 PSMB8 (ENSMODG00000014366) #21 ENSMODG00000038708 ENSMODG00000044001 ENSMODG00000010560 #22 ENSMODG00000047889 MHC-I (ENSMODG00000042965) ENSMODG00000043833 #22 OSCAR (ENSMODG00000010599) ENSMODG00000046464 ENSMODG00000043369 ENSMODG00000025709 ENSMODG00000014539 #22 ENSMODG00000037355 MODO-UE (ENSMODG00000014624) MODO-UM (ENSMODG00000039032) ENSMODG00000014687 ENSMODG00000014692 ENSMODG00000014713 HLA-DRA (ENSMODG00000014722) #28 Opossum MODERN SPECIES 1 RXRB (ENSMODG00000014249) #10 BRD2 (ENSMODG00000014295) #15 ENSMODG00000029544 #17 HLA-DMB (ENSMODG00000014310) #18 ENSMODG00000039629 MODO-UK (ENSMODG00000014336) ENSMODG00000050241 PSMB9 (ENSMODG00000046870) #19 TAP1 (ENSMODG00000014352) #20 PSMB8 (ENSMODG00000014366) #21 ENSMODG00000038708 ENSMODG00000044001 ENSMODG00000010560 #22 ENSMODG00000047889 MHC-I (ENSMODG00000042965) ENSMODG00000043833 #22 OSCAR (ENSMODG00000010599) ENSMODG00000046464 ENSMODG00000043369 ENSMODG00000025709 ENSMODG00000014539 #22 ENSMODG00000037355 MODO-UE (ENSMODG00000014624) MODO-UM (ENSMODG00000039032) ENSMODG00000014687 ENSMODG00000014692 ENSMODG00000014713 HLA-DRA (ENSMODG00000014722) #28 ENSMODG00000014728 ENSMODG00000036691 #12 ENSMODG00000025678 Marsupialia ANCESTRAL SPECIES 2 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00980000198488.n.y.b.b ENSGT00980000198488.n.y.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499.k #22 ENSGT01100000263562.b.a.a.c.b ENSGT00940000160499.l #22 ENSGT00980000198488.n.y.b.a ENSGT00950000183127.b.c.a ENSGT00940000161847.k ENSGT00940000154723.a.a ##24 ENSGT00940000160997 #28 ENSGT00940000164042.b ENSGT00940000162498 #12 ENSGT00950000183127.b.c.b ENSGT00940000162079.g.b ENSGT00890000139566 #34 ENSGT00390000014107.a.b #35 ENSGT00390000008726.h.b #36 ENSGT00940000162975 #37 ENSGT00940000155779.a.b ENSGT00940000162382 Opossum MODERN SPECIES 1 MODO-UK (ENSMODG00000014336) ENSMODG00000050241 PSMB9 (ENSMODG00000046870) #19 TAP1 (ENSMODG00000014352) #20 PSMB8 (ENSMODG00000014366) #21 ENSMODG00000038708 ENSMODG00000044001 ENSMODG00000010560 #22 ENSMODG00000047889 MHC-I (ENSMODG00000042965) ENSMODG00000043833 #22 OSCAR (ENSMODG00000010599) ENSMODG00000046464 ENSMODG00000043369 ENSMODG00000025709 ENSMODG00000014539 #22 ENSMODG00000037355 MODO-UE (ENSMODG00000014624) MODO-UM (ENSMODG00000039032) ENSMODG00000014687 ENSMODG00000014692 ENSMODG00000014713 HLA-DRA (ENSMODG00000014722) #28 ENSMODG00000014728 ENSMODG00000036691 #12 ENSMODG00000025678 ENSMODG00000014767 ENSMODG00000039084 ENSMODG00000050430 ENSMODG00000046754 ENSMODG00000046587 Marsupialia_b ANCESTRAL SPECIES ENSGT00940000160499.l #22 Diprotodontia ANCESTRAL SPECIES ENSGT00940000160499.l #22 Wallaby MODERN SPECIES 12577 ENSMEUG00000013752 #22 Platypus MODERN SPECIES 86 B3GALT4 (ENSOANG00000043293) ENSOANG00000049916 PFDN6 (ENSOANG00000046144) RGL2 (ENSOANG00000047778) ENSOANG00000036542 ENSOANG00000042230 ENSOANG00000043668 BRD2 (ENSOANG00000040477) #15 ENSOANG00000045669 #17 ENSOANG00000046093 #18 ENSOANG00000003398 ENSOANG00000044768 PSMB9 (ENSOANG00000041248) #19 TAP1 (ENSOANG00000021021) #20 PSMB8 (ENSOANG00000014541) #21 TAP2 (ENSOANG00000004283) #22 ENSOANG00000005224 ENSOANG00000037190 ENSOANG00000015643 #28 ENSOANG00000046016 ENSOANG00000009112 ORNANAV1R3015 (ENSOANG00000007358) ENSOANG00000048207 ORNANAV1R3014 (ENSOANG00000040008) ORNANAV1R3013 (ENSOANG00000007354) ORNANAV1R3012 (ENSOANG00000042081) ENSOANG00000046629 ORNANAV1R3121 (ENSOANG00000036357) ORNANAV1R3199 (ENSOANG00000046376) ENSOANG00000007846 ORNANAV1R3119 (ENSOANG00000048918) Sauria ANCESTRAL SPECIES 111 ENSGT01100000263517.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 Lepidosauria ANCESTRAL SPECIES 202 ENSGT01100000263517.a.a ENSGT00940000159897 #19 ENSGT00940000157293 #21 ENSGT00940000160499 #22 Episquamata ANCESTRAL SPECIES 87 ENSGT00940000159897 #19 ENSGT00940000157293 #21 ENSGT00940000160499 #22 Toxicofera ANCESTRAL SPECIES 97 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT00940000161157 #17 ENSGT00940000153385.b.a.b #15 ENSGT00940000162790.a Elapidae DUPLICATION Elapidae ANCESTRAL SPECIES ENSGT00940000160499.a #22 Indian cobra DUPLICATION Indian cobra DUPLICATION Indian cobra MODERN SPECIES 328 ENSNNAG00000013160 ENSNNAG00000013197 ENSNNAG00000013206 ENSNNAG00000013232 ENSNNAG00000013403 ENSNNAG00000013464 ENSNNAG00000013972 ENSNNAG00000014201 ENSNNAG00000014271 ENSNNAG00000014422 ENSNNAG00000014461 #22 ENSNNAG00000014588 #22 ENSNNAG00000014725 ENSNNAG00000014856 #22 ENSNNAG00000014911 ENSNNAG00000015616 ENSNNAG00000015665 ENSNNAG00000015946 ENSNNAG00000008707 Indian cobra MODERN SPECIES 328 ENSNNAG00000008707 ENSNNAG00000015946 ENSNNAG00000015665 ENSNNAG00000015616 ENSNNAG00000014911 ENSNNAG00000014856 #22 ENSNNAG00000014725 ENSNNAG00000014588 #22 ENSNNAG00000014461 #22 ENSNNAG00000014422 ENSNNAG00000014271 ENSNNAG00000014201 ENSNNAG00000013972 ENSNNAG00000013464 ENSNNAG00000013403 ENSNNAG00000013232 ENSNNAG00000013206 ENSNNAG00000013197 ENSNNAG00000013160 Indian cobra MODERN SPECIES 1 ENSNNAG00000008746 ENSNNAG00000008709 ENSNNAG00000008682 ENSNNAG00000008664 ENSNNAG00000008636 ENSNNAG00000008617 ENSNNAG00000008383 ENSNNAG00000008356 ENSNNAG00000008333 ENSNNAG00000008288 ENSNNAG00000008253 ENSNNAG00000007123 ENSNNAG00000006836 PSMB9 (ENSNNAG00000006778) #19 PSMB8 (ENSNNAG00000006754) #21 ENSNNAG00000002795 #22 ENSNNAG00000002787 ENSNNAG00000002780 ENSNNAG00000002769 ENSNNAG00000002764 ENSNNAG00000002761 ENSNNAG00000002755 ENSNNAG00000002750 ENSNNAG00000002742 ENSNNAG00000002733 ENSNNAG00000002723 ENSNNAG00000002713 ENSNNAG00000002703 ENSNNAG00000002645 ENSNNAG00000002629 ENSNNAG00000002609 Elapidae_a ANCESTRAL SPECIES ENSGT00940000160499.a #22 Blue-lipped sea krait MODERN SPECIES 4052 ENSLLTG00000015374 #22 Elapidae ANCESTRAL SPECIES 100 ENSGT00940000159897.d #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499.b #22 Indian cobra MODERN SPECIES 328 ENSNNAG00000013160 ENSNNAG00000013197 ENSNNAG00000013206 ENSNNAG00000013232 ENSNNAG00000013403 ENSNNAG00000013464 ENSNNAG00000013972 ENSNNAG00000014201 ENSNNAG00000014271 ENSNNAG00000014422 ENSNNAG00000014461 #22 ENSNNAG00000014588 #22 ENSNNAG00000014725 ENSNNAG00000014856 #22 ENSNNAG00000014911 ENSNNAG00000015616 ENSNNAG00000015665 ENSNNAG00000015946 ENSNNAG00000008707 Elapidae_a ANCESTRAL SPECIES 194 ENSGT00940000159897.d #19 ENSGT00940000159023 #20 ENSGT00940000157293.lb #21 ENSGT00940000160499.b #22 ENSGT00940000156207.a.b.b.b.a.a.a.a Acanthophiinae ANCESTRAL SPECIES 174 ENSGT00940000159897.d #19 ENSGT00940000159023 #20 ENSGT00940000157293.lb #21 ENSGT00940000160499.b #22 ENSGT00940000156207.a.b.b.b.a.a.a.a ENSGT01100000263521.a.a.a.b.a.b.b.a.b.a.b.a.a.a ENSGT01100000263521.a.a.a.b.a.b.b.a.a.a.b.a.a Mainland tiger snake MODERN SPECIES 406 PSMB9 (ENSNSUG00000006715) #19 TAP1 (ENSNSUG00000006716) #20 PSMB8 (ENSNSUG00000006719) #21 TAP2 (ENSNSUG00000006720) #22 ENSNSUG00000006722 ENSNSUG00000006725 ENSNSUG00000006726 ENSNSUG00000006727 ENSNSUG00000006730 ENSNSUG00000006731 ENSNSUG00000006734 ENSNSUG00000006737 ENSNSUG00000006738 ENSNSUG00000006741 ENSNSUG00000006743 ENSNSUG00000006745 ENSNSUG00000006748 ENSNSUG00000006749 ENSNSUG00000006752 Eastern brown snake MODERN SPECIES 218 ENSPTXG00000011792 ENSPTXG00000013330 #19 TAP1 (ENSPTXG00000013333) #20 ENSPTXG00000013398 #21 ENSPTXG00000013399 #21 TAP2 (ENSPTXG00000013400) #22 ENSPTXG00000013401 ENSPTXG00000013402 ENSPTXG00000013403 ENSPTXG00000013405 ENSPTXG00000013406 ENSPTXG00000013407 ENSPTXG00000013408 ENSPTXG00000013409 ENSPTXG00000013426 ENSPTXG00000013429 Blue-lipped sea krait MODERN SPECIES 3157 ENSLLTG00000004875 #22 ENSLLTG00000004930 ENSLLTG00000004940 ENSLLTG00000004953 Lizard MODERN SPECIES 1613 ENSACAG00000006425 #21 ENSACAG00000006481 #22 ENSACAG00000006674 Laterata ANCESTRAL SPECIES 92 ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 Argentine black and white tegu MODERN SPECIES 72 ENSSMRG00000000439 ENSSMRG00000000458 ENSSMRG00000000497 ENSSMRG00000000558 ENSSMRG00000002547 ENSSMRG00000002568 ENSSMRG00000003689 ENSSMRG00000003695 ENSSMRG00000003698 PSMB9 (ENSSMRG00000003700) #19 TAP1 (ENSSMRG00000003704) #20 PSMB8 (ENSSMRG00000003707) #21 TAP2 (ENSSMRG00000003715) #22 ENSSMRG00000003738 ENSSMRG00000003744 ENSSMRG00000003746 ENSSMRG00000003747 ENSSMRG00000003749 ENSSMRG00000003759 ENSSMRG00000003763 ENSSMRG00000003767 ENSSMRG00000003770 ENSSMRG00000003779 ENSSMRG00000003780 ENSSMRG00000003785 ENSSMRG00000003786 ENSSMRG00000003791 ENSSMRG00000003798 tuatara MODERN SPECIES 652 ENSSPUG00000003870 ENSSPUG00000003862 #19 ENSSPUG00000003859 #19 TAP1 (ENSSPUG00000003847) #20 PSMB8 (ENSSPUG00000003823) #21 TAP2 (ENSSPUG00000003532) #22 ENSSPUG00000003482 Archelosauria ANCESTRAL SPECIES 53 ENSGT00940000159762 #11 ENSGT00950000183127.b.h.a.a ENSGT00940000161847 ENSGT00940000160997.a.a #28 ENSGT00940000155371 ENSGT00950000183127.b.g ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT00980000198488.n ENSGT01100000263475.d.a ENSGT01100000263517.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT01100000263517.b.d Cryptodira ANCESTRAL SPECIES 65 ENSGT00390000008815 ENSGT00940000161022 #7 ENSGT00940000160668 #8 ENSGT00940000160076 #9 ENSGT00940000159208.B #10 ENSGT00940000159762 #11 ENSGT00950000183127.b.h.a.a ENSGT00940000161847 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381 #18 ENSGT01100000263517.a.a ENSGT00940000159897 #19 ENSGT00940000159023 #20 ENSGT00940000157293 #21 ENSGT00940000160499 #22 ENSGT01100000263517.b.d Testudinoidea DUPLICATION Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES 258 ENSGT00940000160499.c.a #22 ENSGT01100000263517.b.d.c.a.a.b.b Testudinidae ANCESTRAL SPECIES 114 ENSGT01100000263517.b.d.d ENSGT00940000159897.h #19 ENSGT00940000159023.d.a #20 ENSGT00940000157293 #21 ENSGT00940000160499.c.a #22 ENSGT01100000263517.b.d.c.a.a.b.a ENSGT01100000263517.b.d.c.a.a.b.b ENSGT00940000154993 #26 ENSGT00940000160997.a.b.b #28 Abingdon island giant tortoise MODERN SPECIES 397 ENSCABG00000007848 ENSCABG00000007847 ENSCABG00000007844 ENSCABG00000006949 ENSCABG00000006848 PSMB9 (ENSCABG00000006846) #19 ENSCABG00000006842 #20 ENSCABG00000006841 #22 ENSCABG00000006754 ENSCABG00000006749 #26 ENSCABG00000006748 ENSCABG00000006747 ENSCABG00000006746 ENSCABG00000006745 ENSCABG00000006743 #22 Goode s thornscrub tortoise MODERN SPECIES 170 ENSGEVG00005020999 ENSGEVG00005020997 ENSGEVG00005020994 ENSGEVG00005020992 ENSGEVG00005020892 ENSGEVG00005020810 ENSGEVG00005020797 PSMB9 (ENSGEVG00005020791) #19 TAP1 (ENSGEVG00005020786) #20 PSMB8 (ENSGEVG00005020780) #21 TAP2 (ENSGEVG00005020773) #22 ENSGEVG00005020695 ENSGEVG00005020518 ENSGEVG00005020457 ENSGEVG00005020451 #26 ENSGEVG00005020447 #28 ENSGEVG00005020442 ENSGEVG00005020430 ENSGEVG00005020423 ENSGEVG00005020421 #18 HLA-DMA (ENSGEVG00005020420) #17 BRD2 (ENSGEVG00005020418) #15 ENSGEVG00005020408 ENSGEVG00005020389 ENSGEVG00005020378 #28 ENSGEVG00005020372 Emydidae ANCESTRAL SPECIES 369 ENSGT00940000160499.c.a #22 ENSGT01100000263517.b.d.c.a.a.b.b Three-toed box turtle MODERN SPECIES 3209 ENSTMTG00000014906 #22 ENSTMTG00000014885 Testudinoidea ANCESTRAL SPECIES 353 ENSGT00940000160499.c.b #22 ENSGT00940000159023.c #20 Testudinidae ANCESTRAL SPECIES ENSGT00940000160499.c.b #22 Abingdon island giant tortoise MODERN SPECIES 397 ENSCABG00000006743 #22 ENSCABG00000006745 ENSCABG00000006746 ENSCABG00000006747 ENSCABG00000006748 ENSCABG00000006749 #26 ENSCABG00000006754 ENSCABG00000006841 #22 ENSCABG00000006842 #20 PSMB9 (ENSCABG00000006846) #19 ENSCABG00000006848 ENSCABG00000006949 ENSCABG00000007844 ENSCABG00000007847 ENSCABG00000007848 Emydidae ANCESTRAL SPECIES 416 ENSGT00940000160499.c.b #22 ENSGT00940000159023.c #20 Three-toed box turtle MODERN SPECIES 3208 ENSTMTG00000014880 #21 ENSTMTG00000014840 #22 ENSTMTG00000014832 painted turtle MODERN SPECIES 1219 BRD2 (ENSCPBG00000008380) #15 HLA-DMA (ENSCPBG00000008372) #17 HLA-DMB (ENSCPBG00000008368) #18 ENSCPBG00000008354 ENSCPBG00000008324 #22 ENSCPBG00000008318 #20 ENSCPBG00000008306 #19 ENSCPBG00000008292 #20 PSMB8 (ENSCPBG00000008280) #21 ENSCPBG00000008241 #22 ENSCPBG00000006733 Testudinoidea ANCESTRAL SPECIES 104 ENSGT01100000263517.b.d.d ENSGT00940000159897.h #19 ENSGT00940000159023.d.a #20 ENSGT00940000157293 #21 ENSGT00940000160499.d #22 ENSGT01100000263517.b.d.c.a.a.a Emydidae ANCESTRAL SPECIES 184 ENSGT00940000159897.g #19 ENSGT00940000159023.d.a #20 ENSGT00940000157293.pb #21 ENSGT00940000160499.d #22 ENSGT01100000263517.b.d.c.a.a.a painted turtle MODERN SPECIES 1219 BRD2 (ENSCPBG00000008380) #15 HLA-DMA (ENSCPBG00000008372) #17 HLA-DMB (ENSCPBG00000008368) #18 ENSCPBG00000008354 ENSCPBG00000008324 #22 ENSCPBG00000008318 #20 ENSCPBG00000008306 #19 ENSCPBG00000008292 #20 PSMB8 (ENSCPBG00000008280) #21 ENSCPBG00000008241 #22 ENSCPBG00000006733 Archosauria ANCESTRAL SPECIES 216 ENSGT00940000160499 #22 ENSGT01100000263517.b.d Aves ANCESTRAL SPECIES 206 ENSGT00940000160499 #22 ENSGT01100000263517.b.d Neognathae ANCESTRAL SPECIES 56 ENSGT00940000161847 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381.b #18 ENSGT00940000160381.a #18 ENSGT00980000198488.n ENSGT00940000159023 #20 ENSGT00940000160499 #22 ENSGT01100000263517.b.d ENSGT01100000263514.B ENSGT00940000158338 ENSGT00940000155565.e.b ENSGT01090000260479 Galloanserae ANCESTRAL SPECIES 129 ENSGT00940000159023 #20 ENSGT00940000160499 #22 Anatidae ANCESTRAL SPECIES 166 ENSGT00940000159023 #20 ENSGT00940000160499 #22 ENSGT00980000198488.n.f.b Pink-footed goose MODERN SPECIES 603 ENSABRG00000001953 ENSABRG00000001935 TAP1 (ENSABRG00000001915) #20 TAP2 (ENSABRG00000001897) #22 ENSABRG00000001874 ENSABRG00000001849 Duck MODERN SPECIES 827 ENSAPLG00000018979 ENSAPLG00000029809 ENSAPLG00000018555 #18 ENSAPLG00000024328 ENSAPLG00000018924 #18 ENSAPLG00000017592 ENSAPLG00000019184 #18 ENSAPLG00000018783 ENSAPLG00000020903 #18 ENSAPLG00000028653 ENSAPLG00000030820 ENSAPLG00000009763 ENSAPLG00000024093 #18 ENSAPLG00000018067 ENSAPLG00000027052 TAP2 (ENSAPLG00000015298) #22 ENSAPLG00000030106 Phasianidae ANCESTRAL SPECIES 45 ENSGT00940000153385.b.a.b #15 ENSGT00940000161157 #17 ENSGT00940000160381.b #18 ENSGT00940000160381.a #18 ENSGT00980000198488.n.g ENSGT00940000159023 #20 ENSGT00940000160499 #22 ENSGT01100000263514.B ENSGT00940000158338 ENSGT00940000155565.e.b ENSGT00950000182966.C.a ENSGT01100000263475.d.a.a.a.a ENSGT01100000263475.d.a.b Phasianidae_b ANCESTRAL SPECIES 54 ENSGT00940000159023.a #20 ENSGT00940000160499 #22 ENSGT00980000198488.n.g ENSGT00940000160381.a #18 ENSGT00940000160381.b #18 ENSGT00940000161157 #17 ENSGT00940000153385.b.a.b #15 ENSGT00940000155739 ENSGT00940000158338 ENSGT00940000155565.e.b ENSGT00950000182966.C.a ENSGT01100000263475.d.a.a.a.a ENSGT01100000263475.d.a.b Chicken MODERN SPECIES 7 RACK1 (ENSGALG00010002855) ENSGALG00010002866 ENSGALG00010002881 BG1 (ENSGALG00010002940) BLEC1 (ENSGALG00010002955) BLEC2 (ENSGALG00010002960) BLB1 (ENSGALG00010002991) TAPBP (ENSGALG00010003019) BLB2 (ENSGALG00010003022) BRD2 (ENSGALG00010003068) #15 DMA (ENSGALG00010003090) #17 DMB1 (ENSGALG00010003825) #18 DMB2 (ENSGALG00010003830) #18 BF1 (ENSGALG00010003110) TAP1 (ENSGALG00010003131) #20 TAP2 (ENSGALG00010003159) #22 BF2 (ENSGALG00010003817) C4 (ENSGALG00010003170) CENPA (ENSGALG00010003178) CYP21A1 (ENSGALG00010003186) ENSGALG00010003205 LTB4R (ENSGALG00010003212) CD1B (ENSGALG00010003836) CD1C (ENSGALG00010003250) ENSGALG00010001604 ENSGALG00010001624 ENSGALG00010002063 ENSGALG00010001642 #8 ENSGALG00010001672 ENSGALG00010001688 #7 ENSGALG00010001694 #7 Turkey MODERN SPECIES 9 ENSMGAG00000019249 TRIM41 (ENSMGAG00000000637) ENSMGAG00000000633 ENSMGAG00000020778 ENSMGAG00000019707 ENSMGAG00000018356 ENSMGAG00000000643 BLec1 (ENSMGAG00000022345) ENSMGAG00000021896 #26 ENSMGAG00000009592 DMA (ENSMGAG00000009605) #17 DMB1 (ENSMGAG00000019122) #18 ENSMGAG00000020722 #18 ENSMGAG00000016508 TAP1 (ENSMGAG00000021062) #20 ENSMGAG00000009713 #22 ENSMGAG00000022216 ENSMGAG00000009650 ENSMGAG00000009636 ENSMGAG00000009629 ENSMGAG00000009621 ENSMGAG00000009608 Japanese quail MODERN SPECIES 7 ENSCJPG00005015693 ENSCJPG00005015694 LTB4R (ENSCJPG00005015695) ENSCJPG00005015696 CYP21A2 (ENSCJPG00005015697) ENSCJPG00005015698 ENSCJPG00005015699 ENSCJPG00005015700 ENSCJPG00005015701 TAP1 (ENSCJPG00005015702) #20 TAP2 (ENSCJPG00005015703) #22 ENSCJPG00005015704 ENSCJPG00005015705 ENSCJPG00005015707 #18 BRD2 (ENSCJPG00005015709) #15 ENSCJPG00005015710 ENSCJPG00005015724 ENSCJPG00005015727 ENSCJPG00005015728 ENSCJPG00005015730 ENSCJPG00005015735 ENSCJPG00005015738 ENSCJPG00005015739 ENSCJPG00005015740 ENSCJPG00005015741 ENSCJPG00005015742 Neognathae_b ANCESTRAL SPECIES 120 ENSGT00940000159023 #20 ENSGT00940000160499 #22 Neognathae_c ANCESTRAL SPECIES 65 ENSGT00990000211179 ENSGT00940000154370 ENSGT00560000077232.A ENSGT00940000159023 #20 ENSGT00940000160499 #22 ENSGT01100000263517.b.d ENSGT00980000198488.n Golden eagle MODERN SPECIES 61 ENSACCG00020016909 ENSACCG00020016912 TUBB (ENSACCG00020016918) FLOT1 (ENSACCG00020016920) ENSACCG00020016922 ENSACCG00020016925 #20 TAP2 (ENSACCG00020016926) #22 ENSACCG00020016928 ENSACCG00020016929 ENSACCG00020016931 Kakapo MODERN SPECIES 74 DAXX (ENSSHBG00005017371) PHF1 (ENSSHBG00005017374) CUTA (ENSSHBG00005017382) SYNGAP1 (ENSSHBG00005017387) ZBTB9 (ENSSHBG00005000925) ENSSHBG00005000934 TUBB (ENSSHBG00005000940) FLOT1 (ENSSHBG00005000952) ENSSHBG00005000956 ENSSHBG00005005918 ENSSHBG00005008002 #20 ENSSHBG00005008013 #22 ENSSHBG00005008031 DDR1 (ENSSHBG00005008051) ENSSHBG00005008063 ENSSHBG00005008071 ENSSHBG00005008082 ENSSHBG00005008097 ENSSHBG00005008106 Passeriformes ANCESTRAL SPECIES 158 ENSGT00940000159023 #20 ENSGT00940000160499 #22 Great tit MODERN SPECIES 362 ENSPMJG00000015976 #20 ENSPMJG00000015975 #22 Passeriformes_d ANCESTRAL SPECIES 105 ENSGT00940000155565.e.b ENSGT00940000159023 #20 ENSGT00940000160499 #22 ENSGT00390000003368 Flycatcher MODERN SPECIES 293 ENSFALG00000001330 ENSFALG00000001320 #20 ENSFALG00000001300 #22 ENSFALG00000001286 ENSFALG00000001276 ENSFALG00000001266 Passeriformes_g ANCESTRAL SPECIES 115 ENSGT00940000155565.e.b ENSGT00940000159023 #20 ENSGT00940000160499 #22 ENSGT00390000003368 Passeroidea ANCESTRAL SPECIES 120 ENSGT00940000155565.e.b ENSGT00940000159023 #20 ENSGT00940000160499 #22 ENSGT00390000003368 Zebra finch MODERN SPECIES 74 CYP4F8 (ENSTGUG00000027557) ENSTGUG00000018385 ENSTGUG00000025467 ENSTGUG00000027584 ENSTGUG00000029089 ENSTGUG00000026546 ENSTGUG00000023119 ENSTGUG00000016675 ENSTGUG00000023077 ENSTGUG00000015337 #20 ENSTGUG00000020195 #22 ENSTGUG00000015195 SYCP1 (ENSTGUG00000015209) ENSTGUG00000019883 ENSTGUG00000021920 ENSTGUG00000021047 ENSTGUG00000021078 ENSTGUG00000026434 ENSTGUG00000025410 ENSTGUG00000024986 ENSTGUG00000015647 ENSTGUG00000014055 ENSTGUG00000026166 ENSTGUG00000025367 ENSTGUG00000028629 ENSTGUG00000025962 Common canary MODERN SPECIES 277 ENSSCAG00000006972 #22 ENSSCAG00000006980 Medium ground finch MODERN SPECIES 647 ENSGFOG00000010737 #22