Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000154993 #28	ENSGT00940000155371	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566
Primates	ANCESTRAL SPECIES	5	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000154993 #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000154993 #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00530000064839 #34	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b	ENSGT00940000162975	ENSGT00940000155779.a.b
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000162892.a.a #27	ENSGT00940000154993.m.a.b #30	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00530000064839 #34	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b	ENSGT00940000162975	ENSGT00940000155779.a.b
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a #27	ENSGT00940000154993.m.a.b #30	ENSGT00940000154993.m.b #29	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00530000064839 #34	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a #27	ENSGT00940000154993.m.a.b #30	ENSGT00940000154993.m.b #29	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00530000064839 #34	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566
Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a #27	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00530000064839 #34	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a #27	ENSGT00940000154993.m.a.a #28	ENSGT00940000154993.m.a.b #30	ENSGT00940000154993.m.b #29	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00530000064839 #34	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a #27	ENSGT00940000154993.m.a.a #28	ENSGT00940000154993.m.a.b #30	ENSGT00940000154993.m.b #29	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00530000064839 #34	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566
Pan	ANCESTRAL SPECIES	5	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.b.a.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a #27	ENSGT00940000154993.m.a.b #30	ENSGT00940000154993.m.b #29	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00530000064839 #34	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b.w
Chimpanzee	MODERN SPECIES	19	RING1 (ENSPTRG00000018037) #7	HSD17B8 (ENSPTRG00000018036) #8	SLC39A7 (ENSPTRG00000018035) #9	RXRB (ENSPTRG00000018034) #10	COL11A2 (ENSPTRG00000018033) #11	HLA-DPB1 (ENSPTRG00000018030) #12	HLA-DPA1 (ENSPTRG00000018029) #13	HLA-DOA (ENSPTRG00000018028) #14	ENSPTRG00000018027 #15	BRD2 (ENSPTRG00000042676) #16	ENSPTRG00000018026 #17	PATR-DMB (ENSPTRG00000018025) #18	PSMB9 (ENSPTRG00000018024) #19	TAP1 (ENSPTRG00000018023) #20	PSMB8 (ENSPTRG00000018022) #21	TAP2 (ENSPTRG00000018021) #22	PATR-DOB (ENSPTRG00000018020) #23	HLA-DQB2 (ENSPTRG00000023404) #24	HLA-DQA2 (ENSPTRG00000034186) #25	HLA-DQB1 (ENSPTRG00000018018) #26	HLA-DQA1 (ENSPTRG00000018017) #27	PATR-DQB1 (ENSPTRG00000018001) #28	ENSPTRG00000051243 #29	PATR-DRB5 (ENSPTRG00000023735) #30	PATR-DRA (ENSPTRG00000018016) #31	BTNL2 (ENSPTRG00000043663) #32	ENSPTRG00000044399 #33	TSBP1 (ENSPTRG00000018014) #34	NOTCH4 (ENSPTRG00000034379) #35	GPSM3 (ENSPTRG00000023968) #36	PBX2 (ENSPTRG00000018012) #37
Bonobo	MODERN SPECIES	19	HSD17B8 (ENSPPAG00000032286) #8	SLC39A7 (ENSPPAG00000028225) #9	RXRB (ENSPPAG00000038590) #10	COL11A2 (ENSPPAG00000013099) #11	HLA-DPB1 (ENSPPAG00000041449) #12	HLA-DPA1 (ENSPPAG00000031863) #13	HLA-DOA (ENSPPAG00000036361) #14	BRD2 (ENSPPAG00000016843) #16	ENSPPAG00000027710 #15	HLA-DMA (ENSPPAG00000041639) #17	HLA-DMB (ENSPPAG00000037856) #18	ENSPPAG00000033020	PSMB9 (ENSPPAG00000038623) #19	TAP1 (ENSPPAG00000029436) #20	PSMB8 (ENSPPAG00000042377) #21	TAP2 (ENSPPAG00000033938) #22	HLA-DOB (ENSPPAG00000027428) #23	HLA-DQB2 (ENSPPAG00000041341) #24	HLA-DQA2 (ENSPPAG00000038014) #25	HLA-DQB1 (ENSPPAG00000041275) #26	ENSPPAG00000019881 #27	ENSPPAG00000039594 #30	ENSPPAG00000036652 #29	ENSPPAG00000029790 #29	HLA-DRA (ENSPPAG00000041818) #31	ENSPPAG00000038384 #32	ENSPPAG00000034948 #34	NOTCH4 (ENSPPAG00000030396) #35	GPSM3 (ENSPPAG00000035669) #36	PBX2 (ENSPPAG00000039908) #37	AGER (ENSPPAG00000028489)
Human	MODERN SPECIES	18	RING1 (ENSG00000204227) #7	HSD17B8 (ENSG00000204228) #8	SLC39A7 (ENSG00000112473) #9	RXRB (ENSG00000204231) #10	COL11A2 (ENSG00000204248) #11	HLA-DPB1 (ENSG00000223865) #12	HLA-DPA1 (ENSG00000231389) #13	HLA-DOA (ENSG00000204252) #14	BRD2 (ENSG00000204256) #16	HLA-DMA (ENSG00000204257) #17	ENSG00000248993	HLA-DMB (ENSG00000242574) #18	TAP1 (ENSG00000168394) #20	PSMB9 (ENSG00000240065) #19	PSMB8 (ENSG00000204264) #21	TAP2 (ENSG00000204267) #22	ENSG00000250264	HLA-DOB (ENSG00000241106) #23	HLA-DQB2 (ENSG00000232629) #24	HLA-DQA2 (ENSG00000237541) #25	HLA-DQB1 (ENSG00000179344) #26	HLA-DQA1 (ENSG00000196735) #27	HLA-DRB1 (ENSG00000196126) #28	HLA-DRB5 (ENSG00000198502) #30	HLA-DRA (ENSG00000204287) #31	BTNL2 (ENSG00000204290) #32	TSBP1 (ENSG00000204296) #34	NOTCH4 (ENSG00000204301) #35	GPSM3 (ENSG00000213654) #36	PBX2 (ENSG00000204304) #37	AGER (ENSG00000204305)
Gorilla	MODERN SPECIES	19	RING1 (ENSGGOG00000009842) #7	HSD17B8 (ENSGGOG00000009838) #8	SLC39A7 (ENSGGOG00000009830) #9	RXRB (ENSGGOG00000009823) #10	COL11A2 (ENSGGOG00000009799) #11	HLA-DPB1 (ENSGGOG00000013630) #12	HLA-DPA1 (ENSGGOG00000013625) #13	HLA-DOA (ENSGGOG00000010653) #14	ENSGGOG00000005838 #15	BRD2 (ENSGGOG00000043461) #16	ENSGGOG00000005835 #17	HLA-DMB (ENSGGOG00000022404) #18	PSMB9 (ENSGGOG00000010965) #19	TAP1 (ENSGGOG00000010958) #20	PSMB8 (ENSGGOG00000010953) #21	TAP2 (ENSGGOG00000010941) #22	HLA-DOB (ENSGGOG00000043194) #23	HLA-DQB2 (ENSGGOG00000014413) #24	ENSGGOG00000037744 #25	HLA-DQB1 (ENSGGOG00000004252) #26	HLA-DQA1 (ENSGGOG00000013538) #27	ENSGGOG00000000700 #29	HLA-DRB5 (ENSGGOG00000037929) #30	HLA-DRA (ENSGGOG00000009861) #31	BTNL2 (ENSGGOG00000009855) #32	TSBP1 (ENSGGOG00000040681) #34	NOTCH4 (ENSGGOG00000002332) #35	GPSM3 (ENSGGOG00000002329) #36	PBX2 (ENSGGOG00000002325) #37	AGER (ENSGGOG00000002323)	RNF5 (ENSGGOG00000002320)
Orangutan	MODERN SPECIES	19	RING1 (ENSPPYG00000017242) #7	HSD17B8 (ENSPPYG00000017241) #8	SLC39A7 (ENSPPYG00000017240) #9	RXRB (ENSPPYG00000017239) #10	COL11A2 (ENSPPYG00000017238) #11	HLA-DPA1 (ENSPPYG00000017229) #13	ENSPPYG00000029571 #12	HLA-DOA (ENSPPYG00000016495) #14	BRD2 (ENSPPYG00000017228) #16	ENSPPYG00000031820 #15	ENSPPYG00000017227 #17	HLA-DMB (ENSPPYG00000017226) #18	PSMB9 (ENSPPYG00000017225) #19	TAP1 (ENSPPYG00000017224) #20	PSMB8 (ENSPPYG00000017223) #21	TAP2 (ENSPPYG00000017222) #22	HLA-DOB (ENSPPYG00000017221) #23	HLA-DQB2 (ENSPPYG00000017220) #24	HLA-DQA2 (ENSPPYG00000017219) #25	ENSPPYG00000017216 #29	HLA-DRB1 (ENSPPYG00000016490) #28	HLA-DRA (ENSPPYG00000017234) #31	BTNL2 (ENSPPYG00000017215) #32	TSBP1 (ENSPPYG00000016489) #34	NOTCH4 (ENSPPYG00000016488) #35	GPSM3 (ENSPPYG00000016487) #36	PBX2 (ENSPPYG00000016486) #37	AGER (ENSPPYG00000016485)	RNF5 (ENSPPYG00000016484)	AGPAT1 (ENSPPYG00000016483)	EGFL8 (ENSPPYG00000041054)
Gibbon	MODERN SPECIES	10	HSD17B8 (ENSNLEG00000006824) #8	SLC39A7 (ENSNLEG00000006815) #9	RXRB (ENSNLEG00000006809) #10	ENSNLEG00000030023 #11	HLA-DPB1 (ENSNLEG00000006801) #12	HLA-DPA1 (ENSNLEG00000034417) #13	ENSNLEG00000031675 #14	BRD2 (ENSNLEG00000006782) #16	ENSNLEG00000032110 #15	HLA-DMA (ENSNLEG00000006775) #17	HLA-DMB (ENSNLEG00000006770) #18	ENSNLEG00000032895	PSMB9 (ENSNLEG00000006757) #19	TAP1 (ENSNLEG00000006738) #20	PSMB8 (ENSNLEG00000006733) #21	TAP2 (ENSNLEG00000006714) #22	HLA-DOB (ENSNLEG00000027543) #23	HLA-DQB2 (ENSNLEG00000006713) #24	HLA-DQA2 (ENSNLEG00000027015) #25	HLA-DQB1 (ENSNLEG00000006693) #26	HLA-DQA1 (ENSNLEG00000032515) #27	ENSNLEG00000032832 #29	HLA-DRA (ENSNLEG00000006686) #31	BTNL2 (ENSNLEG00000006679) #32	ENSNLEG00000006667 #34	ENSNLEG00000006638	GPSM3 (ENSNLEG00000033153) #36	PBX2 (ENSNLEG00000006632) #37	AGER (ENSNLEG00000006604)	RNF5 (ENSNLEG00000027395)	AGPAT1 (ENSNLEG00000006594)
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a.b #27	ENSGT00940000154723.b.m.b ##24	ENSGT00940000162892.a.a.a #27	ENSGT00940000154993.m.a.b #30	ENSGT00940000154993.m.b #29	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997 #31	ENSGT00530000064839 #34	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.qc.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a.b #27	ENSGT00940000154993.m.a.a.a #28	ENSGT00940000154723.b.m.b ##24	ENSGT00940000162892.a.a.a #27	ENSGT00940000154993.m.a.b #30	ENSGT00940000154993.m.a.a.b.a.b #28	ENSGT00940000154993.m.b #29	ENSGT00940000154993.m.a.a.b.b #28	ENSGT00940000160997 #31	ENSGT00530000064839 #34	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.qc.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a.b #27	ENSGT00940000154993.m.a.a.a #28	ENSGT00940000154723.b.m.b ##24	ENSGT00940000162892.a.a.a #27	ENSGT00940000154993.m.a.b #30	ENSGT00940000154993.m.b.a.b #29	ENSGT00940000154993.m.a.a.b.b #28	ENSGT00940000160997 #31	ENSGT00530000064839 #34	ENSGT00950000183123.h.b ##33	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37
Macaca	ANCESTRAL SPECIES	9	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498.k #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.qc.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a.b #27	ENSGT00940000154993.m.a.a.a #28	ENSGT00940000154993.m.b.a.b #29	ENSGT00940000154993.m.a.a.b.b #28	ENSGT00940000160997 #31	ENSGT00530000064839 #34	ENSGT00950000183123.h.b ##33	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00390000012691.c.b.m.b	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160076 #9	ENSGT00940000160668 #8	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498.k #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.qc.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154993.m.a.b #30	ENSGT00940000160997 #31	ENSGT00530000064839 #34	ENSGT00950000183123.h.b ##33	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b	ENSGT00940000162975	ENSGT00940000155779.a.b	ENSGT00940000162382	ENSGT00920000149187
Crab-eating macaque	MODERN SPECIES	14	WDR46 (ENSMFAG00000000475)	B3GALT4 (ENSMFAG00000041942)	RPS18 (ENSMFAG00000032199)	COL11A2 (ENSMFAG00000017491) #11	RING1 (ENSMFAG00000002610) #7	SLC39A7 (ENSMFAG00000038848) #9	HSD17B8 (ENSMFAG00000037332) #8	RXRB (ENSMFAG00000003583) #10	HLA-DOA (ENSMFAG00000058905) #14	BRD2 (ENSMFAG00000037520) #16	ENSMFAG00000060572 #15	HLA-DMA (ENSMFAG00000042109) #17	HLA-DMB (ENSMFAG00000004018) #18	PSMB9 (ENSMFAG00000038128) #19	TAP1 (ENSMFAG00000041369) #20	TAP2 (ENSMFAG00000037139) #22	HLA-DOB (ENSMFAG00000003652) #23	HLA-DQA1 (ENSMFAG00000002949) #27	ENSMFAG00000054107	HLA-DRB5 (ENSMFAG00000000676) #30	ENSMFAG00000058962 ##28	HLA-DRA (ENSMFAG00000032157) #31	ENSMFAG00000033140 #34	ENSMFAG00000049929	ENSMFAG00000033054 #35	RNF5 (ENSMFAG00000033282)	ENSMFAG00000059430	GPSM3 (ENSMFAG00000044173) #36	PBX2 (ENSMFAG00000045367) #37	AGER (ENSMFAG00000038314)	AGPAT1 (ENSMFAG00000042426)
Rhesus	MODERN SPECIES	14	VPS52 (ENSMMUG00000003864)	ENSMMUG00000003867	RING1 (ENSMMUG00000003863) #7	SLC39A7 (ENSMMUG00000003859) #9	HSD17B8 (ENSMMUG00000003861) #8	RXRB (ENSMMUG00000003858) #10	COL11A2 (ENSMMUG00000003850) #11	ENSMMUG00000019371 #13	ENSMMUG00000041095	MAMU-DOA (ENSMMUG00000015734) #14	BRD2 (ENSMMUG00000023138) #16	MAMU-DMB (ENSMMUG00000022626) #18	ENSMMUG00000063291	PSMB9 (ENSMMUG00000011304) #19	PSMB8 (ENSMMUG00000011301) #20	MAMU-DOB (ENSMMUG00000011293) #22	ENSMMUG00000054826	MAMU-DRB1 (ENSMMUG00000029799) #30	MAMU-DRA (ENSMMUG00000039082) #31	TSBP1 (ENSMMUG00000018425) #34	ENSMMUG00000029402 ##33	NOTCH4 (ENSMMUG00000018461) #35	GPSM3 (ENSMMUG00000018459) #36	PBX2 (ENSMMUG00000018456) #37	AGER (ENSMMUG00000018442)	RNF5 (ENSMMUG00000018438)	AGPAT1 (ENSMMUG00000018434)	EGFL8 (ENSMMUG00000018432)	PRRT1 (ENSMMUG00000016647)	FKBPL (ENSMMUG00000015230)	ATF6B (ENSMMUG00000015229)
Pig-tailed macaque	MODERN SPECIES	528	RXRB (ENSMNEG00000034252) #10	COL11A2 (ENSMNEG00000022236) #11	ENSMNEG00000010287 #12	HLA-DPB1 (ENSMNEG00000029725) #12	HLA-DPA1 (ENSMNEG00000040889) #13	HLA-DOA (ENSMNEG00000008508) #14	BRD2 (ENSMNEG00000030743) #16	ENSMNEG00000039758 #15	HLA-DMA (ENSMNEG00000032904) #17	HLA-DMB (ENSMNEG00000044507) #18	ENSMNEG00000035658	ENSMNEG00000036723	PSMB9 (ENSMNEG00000038721) #19	TAP1 (ENSMNEG00000041518) #20	PSMB8 (ENSMNEG00000044942) #21	TAP2 (ENSMNEG00000041413) #22	HLA-DOB (ENSMNEG00000043598) #23	HLA-DQB1 (ENSMNEG00000027969) #26	HLA-DQA1 (ENSMNEG00000038603) #27	ENSMNEG00000044119 #28	ENSMNEG00000018617	ENSMNEG00000020869 ##28
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498.m #13	ENSGT00940000162498.n #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.qc.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353.h #23	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a.b #27	ENSGT00940000155046.t	ENSGT00390000015391	ENSGT00940000153251.b.a	ENSGT00530000064866	ENSGT00390000013322	ENSGT00730000111474	ENSGT00390000010291	ENSGT00960000186815	ENSGT00940000164570	ENSGT00940000164618	ENSGT00390000016847	ENSGT00390000011767
Olive baboon	MODERN SPECIES	16	RING1 (ENSPANG00000023635) #7	HSD17B8 (ENSPANG00000023634) #8	SLC39A7 (ENSPANG00000023633) #9	RXRB (ENSPANG00000018527) #10	COL11A2 (ENSPANG00000009194) #11	HLA-DPB1 (ENSPANG00000005764) #12	HLA-DPA1 (ENSPANG00000018967) #13	HLA-DOA (ENSPANG00000031879) #14	BRD2 (ENSPANG00000019626) #16	ENSPANG00000035618 #15	HLA-DMA (ENSPANG00000026492) #17	HLA-DMB (ENSPANG00000019593) #18	PSMB9 (ENSPANG00000033974) #19	TAP1 (ENSPANG00000024178) #20	PSMB8 (ENSPANG00000016588) #21	TAP2 (ENSPANG00000015103) #22	HLA-DOB (ENSPANG00000016388) #23	ENSPANG00000044498	ENSPANG00000007627	TCF19 (ENSPANG00000024035)	CCHCR1 (ENSPANG00000017010)	ENSPANG00000049186	PSORS1C2 (ENSPANG00000024487)	CDSN (ENSPANG00000047914)	C6orf15 (ENSPANG00000011097)	ENSPANG00000031147	ENSPANG00000009406	SFTA2 (ENSPANG00000030986)	VARS2 (ENSPANG00000018481)	GTF2H4 (ENSPANG00000026494)	DDR1 (ENSPANG00000024488)
Cercopithecinae_d	ANCESTRAL SPECIES	197					ENSGT00940000162390 #12	ENSGT00940000162498.n #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.qc.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353.h #23	ENSGT00940000154723.b.m.a #26	ENSGT00940000162892.a.a.b #27
Drill	MODERN SPECIES	1605						ENSMLEG00000035946 #13	HLA-DOA (ENSMLEG00000037836) #14	ENSMLEG00000042296 #16	ENSMLEG00000035779 #15	HLA-DMA (ENSMLEG00000039758) #17	HLA-DMB (ENSMLEG00000032921) #18	ENSMLEG00000033307	PSMB9 (ENSMLEG00000009919) #19	TAP1 (ENSMLEG00000042023) #20	PSMB8 (ENSMLEG00000028732) #21	TAP2 (ENSMLEG00000040111) #22	HLA-DOB (ENSMLEG00000044332) #23
Sooty mangabey	MODERN SPECIES	451					HLA-DPB1 (ENSCATG00000038170) #12	ENSCATG00000024393 #13	HLA-DOA (ENSCATG00000035917) #14	ENSCATG00000034965 #16	ENSCATG00000037729 #15	HLA-DMA (ENSCATG00000030669) #17	HLA-DMB (ENSCATG00000024024) #18	ENSCATG00000037243	PSMB9 (ENSCATG00000041856) #19	TAP1 (ENSCATG00000033980) #20	PSMB8 (ENSCATG00000024878) #21	TAP2 (ENSCATG00000038838) #22	ENSCATG00000036138 #23	HLA-DQB1 (ENSCATG00000030073) #26	HLA-DQA1 (ENSCATG00000012156) #27
Rhinopithecus	ANCESTRAL SPECIES	177							ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.nc #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.n #24	ENSGT00940000154723.b.m.b ##24	ENSGT00940000162892.a.a.a #27	ENSGT00940000154993.m.a.b #30	ENSGT00940000154993.m.b #29	ENSGT00940000154993.m.a.a #28	ENSGT00940000160997 #31	ENSGT00530000064839 #34	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b
Golden snub-nosed monkey	MODERN SPECIES	1416							HLA-DOA (ENSRROG00000000054) #14	ENSRROG00000012557 #16	ENSRROG00000034857 #15	HLA-DMA (ENSRROG00000037828) #17	HLA-DMB (ENSRROG00000039771) #18	ENSRROG00000012955	PSMB9 (ENSRROG00000005028) #19	TAP1 (ENSRROG00000021353) #20	PSMB8 (ENSRROG00000019326) #21	TAP2 (ENSRROG00000033497) #22
Black snub-nosed monkey	MODERN SPECIES	1396							HLA-DOA (ENSRBIG00000041291) #14	ENSRBIG00000044329 #16	ENSRBIG00000033102 #15	HLA-DMA (ENSRBIG00000027897) #17	HLA-DMB (ENSRBIG00000031730) #18	ENSRBIG00000031206	PSMB9 (ENSRBIG00000042419) #19	TAP1 (ENSRBIG00000038729) #20	PSMB8 (ENSRBIG00000032621) #21	TAP2 (ENSRBIG00000042752) #22	HLA-DOB (ENSRBIG00000039119) #23	ENSRBIG00000031872 ##24	HLA-DQA1 (ENSRBIG00000031838) #27
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.lc #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00390000004757.`b.a	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.l.b #24	ENSGT00940000162892.a.a.d #27	ENSGT00940000154723.b.l.a.b #24	ENSGT00940000162892.a.a.c #27	ENSGT00940000154993.n ##28	ENSGT00940000154723.b.k #24	ENSGT00940000162892.a.b #25	ENSGT00940000154723.b.l.a.a #24	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00530000064839 #34	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37
Cebidae	ANCESTRAL SPECIES	5	ENSGT00940000161022.b #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.lc #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.l.b #24	ENSGT00940000162892.a.a.d #27	ENSGT00940000154723.b.l.a.b #24	ENSGT00940000162892.a.a.c #27	ENSGT00940000154993.n.a ##28
Cebidae_a	ANCESTRAL SPECIES	25	ENSGT00940000161022.b #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b.lc #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b.l.b #24	ENSGT00940000162892.a.a.d #27	ENSGT00940000154723.b.l.a.b #24	ENSGT00940000162892.a.a.c #27	ENSGT00940000154993.n.a.b ##28
Bolivian squirrel monkey	MODERN SPECIES	59	LRRC1 (ENSSBOG00000035746)	KLHL31 (ENSSBOG00000033630)	GCLC (ENSSBOG00000023419)	ELOVL5 (ENSSBOG00000034870)	ENSSBOG00000021942	GCM1 (ENSSBOG00000005634)	FBXO9 (ENSSBOG00000019141)	CILK1 (ENSSBOG00000017283)	GSTA4 (ENSSBOG00000020856)	ENSSBOG00000025505	GSTA5 (ENSSBOG00000023195)	TMEM14A (ENSSBOG00000022452)	PSMB9 (ENSSBOG00000022067) #19	TAP1 (ENSSBOG00000027226) #20	PSMB8 (ENSSBOG00000026986) #21	TAP2 (ENSSBOG00000021205) #22	HLA-DOB (ENSSBOG00000029243) #23	ENSSBOG00000012276 #24	ENSSBOG00000035334 #27	ENSSBOG00000016392 #24	ENSSBOG00000021233 #27	ENSSBOG00000031743 ##28	ENSSBOG00000032160 ##28
Capuchin	MODERN SPECIES	24	VPS52 (ENSCCAG00000029806)	RING1 (ENSCCAG00000020672) #7	HSD17B8 (ENSCCAG00000034063) #8	SLC39A7 (ENSCCAG00000021481) #9	RXRB (ENSCCAG00000015878) #10	COL11A2 (ENSCCAG00000021086) #11	HLA-DPB1 (ENSCCAG00000036491) #12	HLA-DPA1 (ENSCCAG00000035048) #13	HLA-DOA (ENSCCAG00000024211) #14	ENSCCAG00000016930 #16	HLA-DMA (ENSCCAG00000031122) #17	HLA-DMB (ENSCCAG00000030904) #18	PSMB9 (ENSCCAG00000036808) #19	TAP1 (ENSCCAG00000024218) #20	PSMB8 (ENSCCAG00000026335) #21	TAP2 (ENSCCAG00000035497) #22	HLA-DOB (ENSCCAG00000034021) #23	ENSCCAG00000028168 #24	ENSCCAG00000023824 #27	ENSCCAG00000025088 #24	HLA-DQA2 (ENSCCAG00000023549) #25	HLA-DRB1 (ENSCCAG00000025004) #28	ENSCCAG00000024284 ##28	ENSCCAG00000033580 ##28	HLA-DRA (ENSCCAG00000027271) #31	BTNL2 (ENSCCAG00000037406) #32	TSBP1 (ENSCCAG00000034222) #34	ENSCCAG00000029507	GPSM3 (ENSCCAG00000026910) #36	NOTCH4 (ENSCCAG00000025076) #35	PBX2 (ENSCCAG00000034408) #37
Marmoset	MODERN SPECIES	16	B3GALT4 (ENSCJAG00000043225)	ENSCJAG00000021650	VPS52 (ENSCJAG00000021644)	RING1 (ENSCJAG00000081691) #7	ENSCJAG00000021632 #8	SLC39A7 (ENSCJAG00000021622) #9	RXRB (ENSCJAG00000021619) #10	COL11A2 (ENSCJAG00000021577) #11	HLA-DPB1 (ENSCJAG00000021575) #12	HLA-DPA1 (ENSCJAG00000057301) #13	HLA-DOA (ENSCJAG00000021571) #14	ENSCJAG00000021566 #16	HLA-DMA (ENSCJAG00000021558) #17	PSMB9 (ENSCJAG00000021553) #19	TAP1 (ENSCJAG00000021552) #20	TAP2 (ENSCJAG00000021550) #22	HLA-DOB (ENSCJAG00000035217) #23	ENSCJAG00000045515 #27	ENSCJAG00000021548 #24	ENSCJAG00000072040	ENSCJAG00000043141	ENSCJAG00000073641	ENSCJAG00000082318	ENSCJAG00000046350	ENSCJAG00000044447	ENSCJAG00000042232	ENSCJAG00000072632	ENSCJAG00000047812	ENSCJAG00000083244	ENSCJAG00000010588	ENSCJAG00000082116
Mas night monkey	MODERN SPECIES	1006				HLA-DPA1 (ENSANAG00000025586) #13	ENSANAG00000021916	ENSANAG00000020251	HLA-DOA (ENSANAG00000023738) #14	BRD2 (ENSANAG00000025054) #16	ENSANAG00000022510 #15	HLA-DMA (ENSANAG00000024515) #17	HLA-DMB (ENSANAG00000031322) #18	ENSANAG00000029686	PSMB9 (ENSANAG00000018195) #19	TAP1 (ENSANAG00000025374) #20	PSMB8 (ENSANAG00000023214) #21	TAP2 (ENSANAG00000023266) #22	HLA-DQB2 (ENSANAG00000025105) #24	HLA-DQA2 (ENSANAG00000023973) #25	ENSANAG00000023444 #24	ENSANAG00000025439 ##25
Tarsier	MODERN SPECIES	6430											HLA-DMA (ENSTSYG00000013575) #17	HLA-DMB (ENSTSYG00000013568) #18	PSMB9 (ENSTSYG00000007747) #19	TAP1 (ENSTSYG00000007737) #20	PSMB8 (ENSTSYG00000007730) #21	TAP2 (ENSTSYG00000029149) #22	HLA-DOB (ENSTSYG00000007697) #23
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993 #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00940000162450	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b	ENSGT00940000162975
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000161821	ENSGT00940000154993 #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b	ENSGT00940000162975
Mouse lemur	MODERN SPECIES	28	PFDN6 (ENSMICG00000000922)	RGL2 (ENSMICG00000000926)	TAPBP (ENSMICG00000042293)	DAXX (ENSMICG00000000933)	ENSMICG00000033163	KIFC1 (ENSMICG00000005648)	PHF1 (ENSMICG00000005660)	CUTA (ENSMICG00000005673)	SYNGAP1 (ENSMICG00000005678)	SFTA2 (ENSMICG00000030909)	ENSMICG00000035395	ENSMICG00000031166	PSMB9 (ENSMICG00000015307) #19	TAP1 (ENSMICG00000015264) #20	PSMB8 (ENSMICG00000015254) #21	TAP2 (ENSMICG00000015245) #22	HLA-DOB (ENSMICG00000034483) #23	ENSMICG00000031829 #24	ENSMICG00000044751	ENSMICG00000003714 #24	ENSMICG00000028538	ENSMICG00000036984 #28	ENSMICG00000035687	HLA-DRA (ENSMICG00000006228) #31	ENSMICG00000037923	TREML2 (ENSMICG00000027522)	ENSMICG00000041702	TREM2 (ENSMICG00000009719)	TREML1 (ENSMICG00000035283)	NFYA (ENSMICG00000009686)	ENSMICG00000038280
Lemuriformes_a	ANCESTRAL SPECIES	76						ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00860000136081 #15	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000154993 #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b	ENSGT00940000162975	ENSGT00940000155779.a.b
Coquerels sifaka	MODERN SPECIES	872						HLA-DPA1 (ENSPCOG00000015236) #13	HLA-DOA (ENSPCOG00000014372) #14	ENSPCOG00000018880	ENSPCOG00000018456 #16	ENSPCOG00000016191 #15	HLA-DMA (ENSPCOG00000022072) #17	HLA-DMB (ENSPCOG00000018934) #18	PSMB9 (ENSPCOG00000017686) #19	TAP1 (ENSPCOG00000019389) #20	PSMB8 (ENSPCOG00000028091) #21	TAP2 (ENSPCOG00000014799) #22	HLA-DOB (ENSPCOG00000022286) #23	HLA-DQB1 (ENSPCOG00000014494) #24
Greater bamboo lemur	MODERN SPECIES	650					ENSPSMG00000009792 #13	HLA-DPB1 (ENSPSMG00000009639) #12	HLA-DPA1 (ENSPSMG00000009402) #13	HLA-DOA (ENSPSMG00000009261) #14	ENSPSMG00000009252	BRD2 (ENSPSMG00000009223) #16	HLA-DMA (ENSPSMG00000009171) #17	HLA-DMB (ENSPSMG00000009134) #18	PSMB9 (ENSPSMG00000009117) #19	TAP1 (ENSPSMG00000009102) #20	PSMB8 (ENSPSMG00000009083) #21	TAP2 (ENSPSMG00000008940) #22	HLA-DOB (ENSPSMG00000008851) #23	HLA-DQB1 (ENSPSMG00000008743) #24	ENSPSMG00000008349 #25	ENSPSMG00000007912	HLA-DRA (ENSPSMG00000007272) #31	ENSPSMG00000007226 #32	ENSPSMG00000007220
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	146	B3GALT4 (ENSOGAG00000006228)	RPS18 (ENSOGAG00000006225)	VPS52 (ENSOGAG00000006222)	RING1 (ENSOGAG00000006220) #7	HSD17B8 (ENSOGAG00000006214) #8	SLC39A7 (ENSOGAG00000030006) #9	RXRB (ENSOGAG00000011689) #10	COL11A2 (ENSOGAG00000025975) #11	ENSOGAG00000034269	ENSOGAG00000016138 #12	HLA-DPA1 (ENSOGAG00000006476) #13	HLA-DOA (ENSOGAG00000014685) #14	BRD2 (ENSOGAG00000006473) #16	HLA-DMA (ENSOGAG00000006029) #17	HLA-DMB (ENSOGAG00000032749) #18	ENSOGAG00000013823 #22	PSMB9 (ENSOGAG00000013846) #19	TAP1 (ENSOGAG00000013836) #20	PSMB8 (ENSOGAG00000013830) #21	ENSOGAG00000031343 #22	HLA-DQB1 (ENSOGAG00000005662) #24	ENSOGAG00000008401	ENSOGAG00000030012	ENSOGAG00000009732 #28	HLA-DRA (ENSOGAG00000008398) #31	BTNL2 (ENSOGAG00000008396) #32	ENSOGAG00000025050	ENSOGAG00000013069 #28	ENSOGAG00000025825	NOTCH4 (ENSOGAG00000010193) #35	GPSM3 (ENSOGAG00000032276) #36
Bushbaby	MODERN SPECIES	146	HSD17B8 (ENSOGAG00000006214) #8	SLC39A7 (ENSOGAG00000030006) #9	RXRB (ENSOGAG00000011689) #10	COL11A2 (ENSOGAG00000025975) #11	ENSOGAG00000034269	ENSOGAG00000016138 #12	HLA-DPA1 (ENSOGAG00000006476) #13	HLA-DOA (ENSOGAG00000014685) #14	BRD2 (ENSOGAG00000006473) #16	HLA-DMA (ENSOGAG00000006029) #17	HLA-DMB (ENSOGAG00000032749) #18	ENSOGAG00000013823 #22	PSMB9 (ENSOGAG00000013846) #19	TAP1 (ENSOGAG00000013836) #20	PSMB8 (ENSOGAG00000013830) #21	ENSOGAG00000031343 #22	HLA-DQB1 (ENSOGAG00000005662) #24	ENSOGAG00000008401	ENSOGAG00000030012	ENSOGAG00000009732 #28	HLA-DRA (ENSOGAG00000008398) #31	BTNL2 (ENSOGAG00000008396) #32	ENSOGAG00000025050	ENSOGAG00000013069 #28	ENSOGAG00000025825	NOTCH4 (ENSOGAG00000010193) #35	GPSM3 (ENSOGAG00000032276) #36	PBX2 (ENSOGAG00000016303) #37	AGER (ENSOGAG00000030141)	RNF5 (ENSOGAG00000031466)	AGPAT1 (ENSOGAG00000010187)
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000154993 #28	ENSGT00940000155371	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566
Tree shrew	MODERN SPECIES	5171															PSMB8 (ENSTBEG00000007794) #21	ENSTBEG00000007418 #22	ENSTBEG00000007262 #23
Glires	ANCESTRAL SPECIES	5	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821	ENSGT00940000154723.b #24	ENSGT00940000162892 #25	ENSGT00940000154993 #28	ENSGT00940000155371	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566
Rodentia	ANCESTRAL SPECIES	6	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00940000162450	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000162892 #25	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00940000162450	ENSGT00980000198621	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	42	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00940000162450	ENSGT00980000198621	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000155371	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00940000162450	ENSGT00980000198621	ENSGT00940000154993.k.a #28	ENSGT00940000154993.k.b #28	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b
Long-tailed chinchilla	MODERN SPECIES	144	VPS52 (ENSCLAG00000008115)	RING1 (ENSCLAG00000009149) #7	HSD17B8 (ENSCLAG00000007885) #8	SLC39A7 (ENSCLAG00000014475) #9	RXRB (ENSCLAG00000013699) #10	COL11A2 (ENSCLAG00000007783) #11	HLA-DPA1 (ENSCLAG00000010668) #13	HLA-DPB1 (ENSCLAG00000013126) #12	HLA-DOA (ENSCLAG00000011531) #14	BRD2 (ENSCLAG00000009750) #16	HLA-DMA (ENSCLAG00000014679) #17	HLA-DMB (ENSCLAG00000008468) #18	PSMB9 (ENSCLAG00000007918) #19	TAP1 (ENSCLAG00000008052) #20	PSMB8 (ENSCLAG00000006990) #21	TAP2 (ENSCLAG00000012654) #22	HLA-DOB (ENSCLAG00000011735) #23	HLA-DQB2 (ENSCLAG00000011869) #24	ENSCLAG00000009507	ENSCLAG00000016042	ENSCLAG00000013098	HLA-DRA (ENSCLAG00000009768) #31	BTNL2 (ENSCLAG00000007142) #32	ENSCLAG00000015677	ENSCLAG00000011744	ENSCLAG00000009141	GPSM3 (ENSCLAG00000007406) #36	PBX2 (ENSCLAG00000007051) #37	AGER (ENSCLAG00000013330)	RNF5 (ENSCLAG00000009576)	ENSCLAG00000008617
Degu	MODERN SPECIES	46	WDR46 (ENSODEG00000017342)	B3GALT4 (ENSODEG00000017281)	ENSODEG00000017344	VPS52 (ENSODEG00000017744)	RING1 (ENSODEG00000017691) #7	HSD17B8 (ENSODEG00000017486) #8	SLC39A7 (ENSODEG00000017361) #9	RXRB (ENSODEG00000017146) #10	COL11A2 (ENSODEG00000017513) #11	HLA-DPA1 (ENSODEG00000017716) #13	HLA-DOA (ENSODEG00000017569) #14	BRD2 (ENSODEG00000017239) #16	ENSODEG00000017381 #17	HLA-DMB (ENSODEG00000017802) #18	PSMB8 (ENSODEG00000017662) #21	TAP2 (ENSODEG00000017797) #22	PSMB9 (ENSODEG00000017656) #19	TAP1 (ENSODEG00000017484) #20	HLA-DOB (ENSODEG00000017495) #23	ENSODEG00000017249 #24	ENSODEG00000017510	ENSODEG00000017402 #28	ENSODEG00000017435 #28	ENSODEG00000017398	ENSODEG00000017414 #32	ENSODEG00000017401	ENSODEG00000017653	ENSODEG00000017483 #36	PBX2 (ENSODEG00000017449) #37	ENSODEG00000017466	ENSODEG00000017614
Guinea pig	MODERN SPECIES	15	HSD17B8 (ENSCPOG00000013940) #8	SLC39A7 (ENSCPOG00000023790) #9	RXRB (ENSCPOG00000013936) #10	COL11A2 (ENSCPOG00000020466) #11	ENSCPOG00000035477 #13	ENSCPOG00000024142 #12	ENSCPOG00000032859 #12	ENSCPOG00000002427 #13	HLA-DOA (ENSCPOG00000012562) #14	BRD2 (ENSCPOG00000002811) #16	HLA-DMA (ENSCPOG00000015044) #17	HLA-DMB (ENSCPOG00000002810) #18	PSMB9 (ENSCPOG00000002121) #19	TAP1 (ENSCPOG00000026988) #20	PSMB8 (ENSCPOG00000000729) #21	TAP2 (ENSCPOG00000038951) #22	HLA-DOB (ENSCPOG00000033895) #23	HLA-DQB2 (ENSCPOG00000038606) #24	ENSCPOG00000014463 #25	ENSCPOG00000040083 #28	ENSCPOG00000003574 #28	ENSCPOG00000036465	HLA-DRA (ENSCPOG00000012309) #31	BTNL2 (ENSCPOG00000004277) #32	ENSCPOG00000023019	ENSCPOG00000000591	PBX2 (ENSCPOG00000037281) #37	AGER (ENSCPOG00000000590)	RNF5 (ENSCPOG00000030132)	AGPAT1 (ENSCPOG00000037644)	EGFL8 (ENSCPOG00000040046)
Naked mole-rat female	MODERN SPECIES	4	VPS52 (ENSHGLG00000017226)	RING1 (ENSHGLG00000019474) #7	HSD17B8 (ENSHGLG00000019497) #8	SLC39A7 (ENSHGLG00000018434) #9	RXRB (ENSHGLG00000018456) #10	COL11A2 (ENSHGLG00000018531) #11	HLA-DPB1 (ENSHGLG00000019389) #12	HLA-DPA1 (ENSHGLG00000019266) #13	HLA-DOA (ENSHGLG00000019255) #14	BRD2 (ENSHGLG00000019334) #16	HLA-DMA (ENSHGLG00000017048) #17	HLA-DMB (ENSHGLG00000017060) #18	PSMB9 (ENSHGLG00000036914) #19	TAP1 (ENSHGLG00000017081) #20	PSMB8 (ENSHGLG00000017087) #21	TAP2 (ENSHGLG00000019356) #22	HLA-DOB (ENSHGLG00000016652) #23	HLA-DQB2 (ENSHGLG00000038840) #24	ENSHGLG00000043086	ENSHGLG00000011398 #25	ENSHGLG00000011613 #28	ENSHGLG00000011873 #28	ENSHGLG00000012074 #28	HLA-DRA (ENSHGLG00000012243) #31	GPSM3 (ENSHGLG00000012807) #36	ENSHGLG00000013320 #37	AGER (ENSHGLG00000013559)	ENSHGLG00000048713	AGPAT1 (ENSHGLG00000013956)	EGFL8 (ENSHGLG00000014379)	PPT2 (ENSHGLG00000016656)
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00940000162450	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566
Marmotini	ANCESTRAL SPECIES	18	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353.i #23	ENSGT00940000161821.l.a	ENSGT00940000154723.b #24	ENSGT00940000161821.k	ENSGT00940000154993.k.a #28	ENSGT00940000154993.k.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00940000162450.b.a	ENSGT00940000163287 #35	ENSGT00980000198621	ENSGT00390000002471 #36	ENSGT00940000160293 #37
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353.i #23
Arctic ground squirrel	MODERN SPECIES	1178													PSMB9 (ENSUPAG00010005439) #19	TAP1 (ENSUPAG00010004755) #20	PSMB8 (ENSUPAG00010004745) #21	TAP2 (ENSUPAG00010004733) #22	ENSUPAG00010004730 #23
Squirrel	MODERN SPECIES	76	VPS52 (ENSSTOG00000002397)	RING1 (ENSSTOG00000026166) #7	HSD17B8 (ENSSTOG00000020853) #8	SLC39A7 (ENSSTOG00000014304) #9	RXRB (ENSSTOG00000027099) #10	COL11A2 (ENSSTOG00000003578) #11	HLA-DPB1 (ENSSTOG00000003567) #12	HLA-DPA1 (ENSSTOG00000003558) #13	HLA-DOA (ENSSTOG00000010820) #14	BRD2 (ENSSTOG00000010807) #16	HLA-DMA (ENSSTOG00000009246) #17	HLA-DMB (ENSSTOG00000019821) #18	PSMB9 (ENSSTOG00000003475) #19	TAP1 (ENSSTOG00000003451) #20	PSMB8 (ENSSTOG00000019724) #21	TAP2 (ENSSTOG00000003413) #22	ENSSTOG00000030715	HLA-DOB (ENSSTOG00000003405) #23	ENSSTOG00000028098
Alpin marmot	MODERN SPECIES	20	VPS52 (ENSMMMG00000024234)	RING1 (ENSMMMG00000024233) #7	HSD17B8 (ENSMMMG00000024232) #8	SLC39A7 (ENSMMMG00000024231) #9	RXRB (ENSMMMG00000024230) #10	COL11A2 (ENSMMMG00000024229) #11	HLA-DPB1 (ENSMMMG00000024228) #12	HLA-DPA1 (ENSMMMG00000024227) #13	HLA-DOA (ENSMMMG00000024226) #14	BRD2 (ENSMMMG00000024225) #16	HLA-DMA (ENSMMMG00000024224) #17	HLA-DMB (ENSMMMG00000024223) #18	PSMB9 (ENSMMMG00000024222) #19	TAP1 (ENSMMMG00000024221) #20	PSMB8 (ENSMMMG00000024220) #21	TAP2 (ENSMMMG00000024218) #22	HLA-DOB (ENSMMMG00000024217) #23	ENSMMMG00000024215	ENSMMMG00000024056 #24	ENSMMMG00000020395	ENSMMMG00000018808 #24	ENSMMMG00000018797	ENSMMMG00000018785	ENSMMMG00000018780 #28	ENSMMMG00000018777 #28	HLA-DRA (ENSMMMG00000018744) #31	BTNL2 (ENSMMMG00000018734) #32	ENSMMMG00000018723	ENSMMMG00000018720	ENSMMMG00000018661	ENSMMMG00000018655
Eurasian red squirrel	MODERN SPECIES	16	ENSSVLG00005004778	RING1 (ENSSVLG00005004804) #7	HSD17B8 (ENSSVLG00005004902) #8	SLC39A7 (ENSSVLG00005004925) #9	RXRB (ENSSVLG00005004952) #10	COL11A2 (ENSSVLG00005005202) #11	HLA-DPB1 (ENSSVLG00005006269) #12	HLA-DPA1 (ENSSVLG00005006304) #13	HLA-DOA (ENSSVLG00005006335) #14	BRD2 (ENSSVLG00005006374) #16	HLA-DMA (ENSSVLG00005006465) #17	HLA-DMB (ENSSVLG00005006515) #18	PSMB9 (ENSSVLG00005006563) #19	TAP1 (ENSSVLG00005006618) #20	PSMB8 (ENSSVLG00005006647) #21	TAP2 (ENSSVLG00005006696) #22	HLA-DOB (ENSSVLG00005006746) #23	ENSSVLG00005006864 #24	ENSSVLG00005007173	HLA-DQB2 (ENSSVLG00005007368) #24	ENSSVLG00005007455	ENSSVLG00005007482 #28	ENSSVLG00005007511	ENSSVLG00005007546 #28	HLA-DRA (ENSSVLG00005007588) #31	BTNL2 (ENSSVLG00005007627) #32	ENSSVLG00005007707	ENSSVLG00005007731	ENSSVLG00005007751	ENSSVLG00005008664	NOTCH4 (ENSSVLG00005008720) #35
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #28	ENSGT00940000154993.l #28	ENSGT00940000155371	ENSGT00940000154993.k.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450	ENSGT00940000163287 #35	ENSGT00390000002471 #36
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37
Muroidea	ANCESTRAL SPECIES	15	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450	ENSGT00980000198621	ENSGT00940000163287 #35	ENSGT00390000002471 #36
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.b	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00940000162450	ENSGT00980000198621	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b
Cricetinae	ANCESTRAL SPECIES	43		ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.k.b.b #28	ENSGT00940000154993.k.a #28	ENSGT00940000155371	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00940000162450	ENSGT00980000198621	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b
Golden Hamster	MODERN SPECIES	856					Ring1 (ENSMAUG00000012254) #7	Hsd17b8 (ENSMAUG00000013407) #8	Slc39a7 (ENSMAUG00000015255) #9	Rxrb (ENSMAUG00000009043) #10	Col11a2 (ENSMAUG00000021348) #11	Brd2 (ENSMAUG00000006799) #16	H2-DMa (ENSMAUG00000000861) #17	ENSMAUG00000008923 #18	Psmb9 (ENSMAUG00000007584) #19	Tap1 (ENSMAUG00000017718) #20	Psmb8 (ENSMAUG00000003396) #21	Tap2 (ENSMAUG00000015081) #22	H2-Ob (ENSMAUG00000007698) #23	H2-Ab1 (ENSMAUG00000020395) #24	H2-Aa (ENSMAUG00000003363)	H2-Eb2 (ENSMAUG00000018151) #28	Btnl2 (ENSMAUG00000003530) #32	Btnl1 (ENSMAUG00000016817)	ENSMAUG00000015609	ENSMAUG00000009410	Notch4 (ENSMAUG00000015895)	Gpsm3 (ENSMAUG00000013374) #36	Pbx2 (ENSMAUG00000003275) #37	Ager (ENSMAUG00000001006)	Rnf5 (ENSMAUG00000000684)	Agpat1 (ENSMAUG00000011278)	Egfl8 (ENSMAUG00000013647)
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00390000008815	ENSGT00980000198488.m.a.b.a.b.a.a.a.f.a.b.b.a	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000154993.l #28	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00940000162450	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b	ENSGT00390000008726.h.b
Prairie vole	MODERN SPECIES	352	Vps52 (ENSMOCG00000004229)	ENSMOCG00000014473	Ring1 (ENSMOCG00000020973) #7	Hsd17b8 (ENSMOCG00000001695) #8	Slc39a7 (ENSMOCG00000019993) #9	Rxrb (ENSMOCG00000000374) #10	Col11a2 (ENSMOCG00000016852) #11	ENSMOCG00000010963 #13	H2-Oa (ENSMOCG00000020236) #14	Brd2 (ENSMOCG00000016368) #16	H2-DMa (ENSMOCG00000002744) #17	ENSMOCG00000022309 #18	Psmb9 (ENSMOCG00000005369) #19	Tap1 (ENSMOCG00000019762) #20	Psmb8 (ENSMOCG00000014719) #21	Tap2 (ENSMOCG00000022898) #22	H2-Ob (ENSMOCG00000008562) #23	H2-Ab1 (ENSMOCG00000008439) #24	ENSMOCG00000013355	ENSMOCG00000017941 #28	ENSMOCG00000019721	H2-Ea (ENSMOCG00000008786) #31	Btnl2 (ENSMOCG00000014437) #32	Btnl1 (ENSMOCG00000018715)	ENSMOCG00000011431	Rnf39 (ENSMOCG00000015333)	Ppp1r11 (ENSMOCG00000002207)	Polr1h (ENSMOCG00000008537)	Polr1has (ENSMOCG00000015745)	H2-M5 (ENSMOCG00000004410)	Mog (ENSMOCG00000019437)
Northern American deer mouse	MODERN SPECIES	13	ENSPEMG00000024622	Ring1 (ENSPEMG00000019238) #7	Hsd17b8 (ENSPEMG00000012925) #8	Slc39a7 (ENSPEMG00000003403) #9	Rxrb (ENSPEMG00000018454) #10	Col11a2 (ENSPEMG00000016918) #11	ENSPEMG00000026148 #12	ENSPEMG00000015442 #13	H2-Oa (ENSPEMG00000011158) #14	Brd2 (ENSPEMG00000018138) #16	H2-DMa (ENSPEMG00000013203) #17	ENSPEMG00000018040 #18	Psmb9 (ENSPEMG00000009609) #19	Tap1 (ENSPEMG00000012461) #20	Psmb8 (ENSPEMG00000012170) #21	Tap2 (ENSPEMG00000010503) #22	H2-Ob (ENSPEMG00000001796) #23	ENSPEMG00000012719 #24	ENSPEMG00000007095	ENSPEMG00000015401 #24	ENSPEMG00000012679	H2-Eb1 (ENSPEMG00000002889)	H2-Eb2 (ENSPEMG00000006456) #28	H2-Ea (ENSPEMG00000008261) #31	Btnl2 (ENSPEMG00000007431) #32	Btnl1 (ENSPEMG00000008094)	ENSPEMG00000028515 #28	ENSPEMG00000011748	ENSPEMG00000026840	ENSPEMG00000026496	Notch4 (ENSPEMG00000015181)
Murinae	ANCESTRAL SPECIES	18	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162390 #12	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450	ENSGT00940000163287 #35	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566
Mus	ANCESTRAL SPECIES	16	ENSGT00390000008815	ENSGT00980000198488.m.a.b.a.b.a.a.a.c	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450.f	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000008815	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381.h #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450.f	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566	ENSGT00390000014107.a.b.c.a
Mus_B	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.b.b.a.a.a	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381.g #18	ENSGT00940000160381.h #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450.e	ENSGT00940000162450.f	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566
Mus_C	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.a.a.c.a.a	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #13	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381.g #18	ENSGT00940000160381.h #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00860000136204	ENSGT00940000162353 #23	ENSGT00940000154723.b #24	ENSGT00940000161821	ENSGT00940000155371	ENSGT00940000154993.k.b.b #28	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000162079	ENSGT00530000064839 #34	ENSGT00940000162450.e	ENSGT00940000162450.f	ENSGT00390000002471 #36	ENSGT00940000160293 #37	ENSGT00890000139566
Steppe mouse	MODERN SPECIES	2564	ENSMSIG00000012243	Ring1 (ENSMSIG00000012190) #7	ENSMSIG00000012153 #8	Slc39a7 (ENSMSIG00000012137) #9	Rxrb (ENSMSIG00000012091) #10	Col11a2 (ENSMSIG00000011347) #11	ENSMSIG00000011214 #13	H2-Oa (ENSMSIG00000011198) #14	Brd2 (ENSMSIG00000011118) #16	H2-DMa (ENSMSIG00000011088) #17	H2-DMb1 (ENSMSIG00000011055) #18	Psmb9 (ENSMSIG00000011042) #19	ENSMSIG00000011012 #20	Psmb8 (ENSMSIG00000010986) #21	ENSMSIG00000010972	Tap2 (ENSMSIG00000010919) #22	H2-Ob (ENSMSIG00000010868) #23	ENSMSIG00000010843 #24	H2-Aa (ENSMSIG00000010823)	ENSMSIG00000010807	H2-Eb2 (ENSMSIG00000010788) #28	H2-Ea (ENSMSIG00000010776) #31	Btnl2 (ENSMSIG00000010760) #32	Btnl1 (ENSMSIG00000010748)	ENSMSIG00000010738	Tsbp1 (ENSMSIG00000010478) #34	Btnl4 (ENSMSIG00000010440)	ENSMSIG00000010410
spretus	MODERN SPECIES	8	B3galt4 (MGP_SPRETEiJ_G0022339)	MGP_SPRETEiJ_G0022340	Ring1 (MGP_SPRETEiJ_G0022342) #7	Hsd17b8 (MGP_SPRETEiJ_G0022343) #8	Slc39a7 (MGP_SPRETEiJ_G0022344) #9	Rxrb (MGP_SPRETEiJ_G0022345) #10	Col11a2 (MGP_SPRETEiJ_G0022346) #11	H2-Oa (MGP_SPRETEiJ_G0022347) #14	Brd2 (MGP_SPRETEiJ_G0022348) #16	H2-DMa (MGP_SPRETEiJ_G0022349) #17	MGP_SPRETEiJ_G0022350 #18	H2-DMb2 (MGP_SPRETEiJ_G0022351) #18	Psmb9 (MGP_SPRETEiJ_G0022352) #19	Tap1 (MGP_SPRETEiJ_G0022353) #20	Psmb8 (MGP_SPRETEiJ_G0022354) #21	Tap2 (MGP_SPRETEiJ_G0022355) #22	MGP_SPRETEiJ_G0022356	H2-Ob (MGP_SPRETEiJ_G0022357) #23	H2-Ab1 (MGP_SPRETEiJ_G0022358) #24	H2-Aa (MGP_SPRETEiJ_G0022359)	MGP_SPRETEiJ_G0022360	H2-Eb2 (MGP_SPRETEiJ_G0022361) #28	Btnl2 (MGP_SPRETEiJ_G0022362) #32	Btnl1 (MGP_SPRETEiJ_G0022363)	Tsbp1 (MGP_SPRETEiJ_G0022364) #34	MGP_SPRETEiJ_G0022366	Notch4 (MGP_SPRETEiJ_G0022367)	Gpsm3 (MGP_SPRETEiJ_G0022368) #36	Pbx2 (MGP_SPRETEiJ_G0022369) #37	Ager (MGP_SPRETEiJ_G0022370)	Rnf5 (MGP_SPRETEiJ_G0022371)
Mouse	MODERN SPECIES	8	Vps52 (ENSMUSG00000024319)	H2-K1 (ENSMUSG00000061232)	Ring1 (ENSMUSG00000024325) #7	Hsd17b8 (ENSMUSG00000073422) #8	Slc39a7 (ENSMUSG00000024327) #9	Rxrb (ENSMUSG00000039656) #10	Col11a2 (ENSMUSG00000024330) #11	H2-Oa (ENSMUSG00000024334) #14	Brd2 (ENSMUSG00000024335) #16	H2-DMa (ENSMUSG00000037649) #17	H2-DMb2 (ENSMUSG00000037548) #18	H2-DMb1 (ENSMUSG00000079547) #18	Psmb9 (ENSMUSG00000096727) #19	Tap1 (ENSMUSG00000037321) #20	Psmb8 (ENSMUSG00000024338) #21	Tap2 (ENSMUSG00000024339) #22	H2-Ob (ENSMUSG00000041538) #23	H2-Ab1 (ENSMUSG00000073421) #24	H2-Aa (ENSMUSG00000036594)	H2-Eb1 (ENSMUSG00000060586)	H2-Eb2 (ENSMUSG00000067341) #28	H2-Ea (ENSMUSG00000036322) #31	Btnl2 (ENSMUSG00000024340) #32	Btnl1 (ENSMUSG00000062638)	Tsbp1 (ENSMUSG00000057246) #34	Btnl4 (ENSMUSG00000058435)	Btnl6 (ENSMUSG00000092618)	Notch4 (ENSMUSG00000015468)	Gpsm3 (ENSMUSG00000034786) #36	Pbx2 (ENSMUSG00000034673) #37	Ager (ENSMUSG00000015452)
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021434	MGP_CAROLIEiJ_G0021435	Ring1 (MGP_CAROLIEiJ_G0021436) #7	Hsd17b8 (MGP_CAROLIEiJ_G0021437) #8	Slc39a7 (MGP_CAROLIEiJ_G0021438) #9	Rxrb (MGP_CAROLIEiJ_G0021439) #10	Col11a2 (MGP_CAROLIEiJ_G0021440) #11	H2-Oa (MGP_CAROLIEiJ_G0021441) #14	Brd2 (MGP_CAROLIEiJ_G0021442) #16	H2-DMa (MGP_CAROLIEiJ_G0021443) #17	MGP_CAROLIEiJ_G0021444 #18	MGP_CAROLIEiJ_G0021445 #18	Psmb9 (MGP_CAROLIEiJ_G0021446) #19	Tap1 (MGP_CAROLIEiJ_G0021447) #20	Psmb8 (MGP_CAROLIEiJ_G0021448) #21	Tap2 (MGP_CAROLIEiJ_G0021449) #22	MGP_CAROLIEiJ_G0021450	H2-Ob (MGP_CAROLIEiJ_G0021451) #23	H2-Ab1 (MGP_CAROLIEiJ_G0021452) #24	H2-Aa (MGP_CAROLIEiJ_G0021453)	MGP_CAROLIEiJ_G0021454	H2-Eb2 (MGP_CAROLIEiJ_G0021455) #28	Btnl2 (MGP_CAROLIEiJ_G0021456) #32	Btnl1 (MGP_CAROLIEiJ_G0021457)	Tsbp1 (MGP_CAROLIEiJ_G0021458) #34	Btnl6 (MGP_CAROLIEiJ_G0021459)	MGP_CAROLIEiJ_G0021460	Notch4 (MGP_CAROLIEiJ_G0021461)	Gpsm3 (MGP_CAROLIEiJ_G0021462) #36	Pbx2 (MGP_CAROLIEiJ_G0021463) #37	Ager (MGP_CAROLIEiJ_G0021464)
Shrew mouse	MODERN SPECIES	9	Pfdn6 (MGP_PahariEiJ_G0020430)	Wdr46 (MGP_PahariEiJ_G0020431)	B3galt4 (MGP_PahariEiJ_G0020432)	MGP_PahariEiJ_G0020433	Ring1 (MGP_PahariEiJ_G0020434) #7	Hsd17b8 (MGP_PahariEiJ_G0020435) #8	Slc39a7 (MGP_PahariEiJ_G0020436) #9	Rxrb (MGP_PahariEiJ_G0020437) #10	Col11a2 (MGP_PahariEiJ_G0020438) #11	H2-Oa (MGP_PahariEiJ_G0020439) #14	Brd2 (MGP_PahariEiJ_G0020440) #16	H2-DMa (MGP_PahariEiJ_G0020441) #17	Psmb9 (MGP_PahariEiJ_G0020442) #19	Tap1 (MGP_PahariEiJ_G0020443) #20	Psmb8 (MGP_PahariEiJ_G0020444) #21	Tap2 (MGP_PahariEiJ_G0020445) #22	MGP_PahariEiJ_G0020446	H2-Ob (MGP_PahariEiJ_G0020447) #23	H2-Ab1 (MGP_PahariEiJ_G0020448) #24	H2-Aa (MGP_PahariEiJ_G0020449)	MGP_PahariEiJ_G0020450	H2-Eb2 (MGP_PahariEiJ_G0020451) #28	Btnl2 (MGP_PahariEiJ_G0020452) #32	Btnl1 (MGP_PahariEiJ_G0020453)	Tsbp1 (MGP_PahariEiJ_G0020454) #34	MGP_PahariEiJ_G0020455	Notch4 (MGP_PahariEiJ_G0020456)	Gpsm3 (MGP_PahariEiJ_G0020457) #36	Pbx2 (MGP_PahariEiJ_G0020458) #37	Ager (MGP_PahariEiJ_G0020459)	Agpat1 (MGP_PahariEiJ_G0020461)
Rat	MODERN SPECIES	12	Vps52 (ENSRNOG00000000470)	Ring1 (ENSRNOG00000000467) #7	Hsd17b8 (ENSRNOG00000000466) #8	Slc39a7 (ENSRNOG00000000465) #9	Rxrb (ENSRNOG00000000464) #10	Col11a2 (ENSRNOG00000000463) #11	RT1-Hb-ps1 (ENSRNOG00000061936) #12	RT1-Ha (ENSRNOG00000045908) #13	RT1-DOa (ENSRNOG00000026762) #14	Brd2 (ENSRNOG00000000461) #16	RT1-DMa (ENSRNOG00000066773) #17	RT1-DMb (ENSRNOG00000049491) #18	Psmb9 (ENSRNOG00000000459) #19	Tap1 (ENSRNOG00000000457) #20	Psmb8 (ENSRNOG00000000456) #21	Tap2 (ENSRNOG00000000455) #22	RT1-DOb (ENSRNOG00000000454) #23	RT1-Bb (ENSRNOG00000032708) #24	RT1-Ba (ENSRNOG00000000451)	RT1-Db1 (ENSRNOG00000033215)	RT1-Db2 (ENSRNOG00000030431)	RT1-Da (ENSRNOG00000032844) #31	Btnl2 (ENSRNOG00000028541) #32	Btnl3 (ENSRNOG00000039396)	Tsbp1 (ENSRNOG00000039398) #34	Btn3a2 (ENSRNOG00000068592)	Btnl5 (ENSRNOG00000047304)	AABR07044388.4 (ENSRNOG00000052710)	Btnl7 (ENSRNOG00000000446)	Btnl8 (ENSRNOG00000064738)	Btnl4 (ENSRNOG00000068088)
Lesser Egyptian jerboa	MODERN SPECIES	41	Rps18 (ENSJJAG00000018899)	Vps52 (ENSJJAG00000020884)	Ring1 (ENSJJAG00000022246) #7	Hsd17b8 (ENSJJAG00000021794) #8	Slc39a7 (ENSJJAG00000014121) #9	Rxrb (ENSJJAG00000004710) #10	Col11a2 (ENSJJAG00000010448) #11	ENSJJAG00000023713 #12	H2-Oa (ENSJJAG00000000542) #14	Brd2 (ENSJJAG00000010183) #16	H2-DMa (ENSJJAG00000012555) #17	ENSJJAG00000004664 #18	Psmb9 (ENSJJAG00000022884) #19	Tap1 (ENSJJAG00000022861) #20	Psmb8 (ENSJJAG00000023598) #21	Tap2 (ENSJJAG00000004300) #22	ENSJJAG00000003836	H2-Ob (ENSJJAG00000022338) #23
Kangaroo rat	MODERN SPECIES	519	Vps52 (ENSDORG00000013822)	Ring1 (ENSDORG00000013820) #7	Hsd17b8 (ENSDORG00000013819) #8	Slc39a7 (ENSDORG00000013818) #9	Rxrb (ENSDORG00000013816) #10	Col11a2 (ENSDORG00000013815) #11	ENSDORG00000024606 #12	ENSDORG00000004500 #13	H2-Oa (ENSDORG00000004499) #14	Brd2 (ENSDORG00000004497) #16	ENSDORG00000005173 #17	ENSDORG00000005172 #18	Psmb9 (ENSDORG00000006231) #19	Tap1 (ENSDORG00000029698) #20	Psmb8 (ENSDORG00000028592) #21	Tap2 (ENSDORG00000008311) #22	ENSDORG00000008310 #23	ENSDORG00000011904	ENSDORG00000006991 #28	ENSDORG00000029602 #28	ENSDORG00000024908	H2-Ea (ENSDORG00000014782) #31	ENSDORG00000028297	ENSDORG00000009936	Gpsm3 (ENSDORG00000025609) #36	Pbx2 (ENSDORG00000009932) #37	ENSDORG00000009930	Rnf5 (ENSDORG00000023271)	Agpat1 (ENSDORG00000009925)	Egfl8 (ENSDORG00000019824)	Ppt2 (ENSDORG00000029200)
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00390000008815	ENSGT00940000161022 #7	ENSGT00940000160668 #8	ENSGT00940000160076 #9	ENSGT00940000159208.B #10	ENSGT00940000159762 #11	ENSGT00940000162498 #13	ENSGT00940000162390 #12	ENSGT00940000162112 #14	ENSGT00940000153385.b.a.b #16	ENSGT00940000161157 #17	ENSGT00940000160381 #18	ENSGT00940000159897 #19	ENSGT00940000159023 #20	ENSGT00940000157293 #21	ENSGT00940000160499 #22	ENSGT00940000162353 #23	ENSGT00940000161821	ENSGT00940000154993 #28	ENSGT00940000154723.b #24	ENSGT00940000155371	ENSGT00940000160997 #31	ENSGT00940000162484 #32	ENSGT00940000164957
Rabbit	MODERN SPECIES	3	B3GALT4 (ENSOCUG00000010550)	ENSOCUG00000010546	VPS52 (ENSOCUG00000010533)	HSD17B8 (ENSOCUG00000020995) #8	SLC39A7 (ENSOCUG00000011598) #9	RXRB (ENSOCUG00000011590) #10	COL11A2 (ENSOCUG00000016497) #11	HLA-DPB1 (ENSOCUG00000008721) #12	ENSOCUG00000003319 #14	BRD2 (ENSOCUG00000003097) #16	HLA-DMA (ENSOCUG00000022573) #17	HLA-DMB (ENSOCUG00000026567) #18	ENSOCUG00000002139 #19	TAP1 (ENSOCUG00000002135) #20	PSMB8 (ENSOCUG00000002131) #21	TAP2 (ENSOCUG00000002489) #22	HLA-DOB (ENSOCUG00000029437) #23	ENSOCUG00000002480	HLA-DQB1 (ENSOCUG00000002485) #24	ENSOCUG00000030453	ENSOCUG00000029731 #28	HLA-DRA (ENSOCUG00000009103) #31	ENSOCUG00000025822	ENSOCUG00000006769 #32	ENSOCUG00000021762	SFTA2 (ENSOCUG00000035950)	GTF2H4 (ENSOCUG00000021496)	DDR1 (ENSOCUG00000016487)	IER3 (ENSOCUG00000016451)	FLOT1 (ENSOCUG00000017308)	TUBB (ENSOCUG00000002187)
Pika	MODERN SPECIES	4582																ENSOPRG00000001644 #22	ENSOPRG00000001634 #23