Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316 #7	ENSGT00390000014785 #8	ENSGT01090000260082.d.a.a.a.a #9	ENSGT00390000001432 #11	ENSGT00940000158517 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00940000166108	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414 #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316 #7	ENSGT00390000014785 #8	ENSGT01090000260082.d.a.a.a.a #9	ENSGT00390000001432 #11	ENSGT00940000158517 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00940000166108	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414 #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35
Artiodactyla_b	ANCESTRAL SPECIES	19								ENSGT00940000153259.a.a.a #13	ENSGT00940000156229.k.b	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00940000166108	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414 #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35
Cetacea	ANCESTRAL SPECIES	19									ENSGT00940000153259.a.a.a #13	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414 #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35	ENSGT00940000154651 #36	ENSGT00940000167707 #37
Odontoceti	ANCESTRAL SPECIES	19									ENSGT00940000153259.a.a.a #13	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414 #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35	ENSGT00940000154651 #36	ENSGT00940000167707 #37
Sperm whale	MODERN SPECIES	13	ZC3H12B (ENSPCTG00005006026) #7	LAS1L (ENSPCTG00005006056) #8	MSN (ENSPCTG00005006123) #9	ENSPCTG00005006301 #10	VSIG4 (ENSPCTG00005006340) #11	HEPH (ENSPCTG00005006537) #12	EDA2R (ENSPCTG00005007035) #13	ENSPCTG00005007052 #14	AR (ENSPCTG00005007108) #15	ENSPCTG00005007403 #16	OPHN1 (ENSPCTG00005007453) #17	YIPF6 (ENSPCTG00005007673) #18	STARD8 (ENSPCTG00005007728) #19	EFNB1 (ENSPCTG00005007794) #20	PJA1 (ENSPCTG00005007814) #21	FAM155B (ENSPCTG00005007830) #22	EDA (ENSPCTG00005007846) #23	AWAT2 (ENSPCTG00005007938) #24	OTUD6A (ENSPCTG00005007970) #25	ENSPCTG00005007988 #26	DGAT2L6 (ENSPCTG00005008013) #27	P2RY4 (ENSPCTG00005008047) #28	ARR3 (ENSPCTG00005008081) #29	PDZD11 (ENSPCTG00005008292) #30	KIF4A (ENSPCTG00005008383) #31	ENSPCTG00005008588 #32	GDPD2 (ENSPCTG00005008628) #33	DLG3 (ENSPCTG00005008904) #34	TEX11 (ENSPCTG00005009500) #35	SLC7A3 (ENSPCTG00005009558) #36	ENSPCTG00005009683 #37
Odontoceti_a	ANCESTRAL SPECIES	28									ENSGT00940000153259.a.a.a #13	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414.hb #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35	ENSGT00940000154651 #36	ENSGT00940000153609.a
Odontoceti_b	ANCESTRAL SPECIES	17							ENSGT00940000153259.a.a.a #13	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT01010000230188	ENSGT00940000154585.b #21	ENSGT00390000005254.i.a.b.d.a.a.a	ENSGT00940000161362 #22	ENSGT00390000002873.z.b.b	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414.hb #26	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35	ENSGT00940000154651 #36	ENSGT00940000153609.a	ENSGT00940000159334
Monodontidae	ANCESTRAL SPECIES	19							ENSGT00940000153259.a.a.a #13	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT01010000230188	ENSGT00940000154585.b #21	ENSGT00390000005254.i.a.b.d.a.a.a	ENSGT00940000161362 #22	ENSGT00390000002873.z.b.b	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414.hb #26	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35	ENSGT00940000154651 #36	ENSGT00940000153609.a	ENSGT00940000159334
Narwhal	MODERN SPECIES	309	ENSMMNG00015009307	ABITRAM (ENSMMNG00015009309)	ENSMMNG00015009316	ENSMMNG00015009322	ENSMMNG00015009327	ENSMMNG00015009330	ENSMMNG00015009336	EDA2R (ENSMMNG00015009344) #13	AR (ENSMMNG00015009371) #15	OPHN1 (ENSMMNG00015009417) #17	YIPF6 (ENSMMNG00015009448) #18	STARD8 (ENSMMNG00015009480) #19	EFNB1 (ENSMMNG00015009506) #20	PJA1 (ENSMMNG00015009520) #21	ENSMMNG00015009530	NALF2 (ENSMMNG00015009538) #22	ENSMMNG00015009543	EDA (ENSMMNG00015009555) #23	AWAT2 (ENSMMNG00015009580) #24	OTUD6A (ENSMMNG00015009597) #25	ENSMMNG00015009602 #26	P2RY4 (ENSMMNG00015009613) #28	ARR3 (ENSMMNG00015009631) #29	PDZD11 (ENSMMNG00015009657) #30	KIF4A (ENSMMNG00015009682) #31	GDPD2 (ENSMMNG00015009740) #33	DLG3 (ENSMMNG00015009786) #34	ENSMMNG00015009851	TEX11 (ENSMMNG00015009880) #35	SLC7A3 (ENSMMNG00015009926) #36	SNX12 (ENSMMNG00015009938)
Beluga whale	MODERN SPECIES	76					ENSDLEG00000014536	AR (ENSDLEG00000014573) #15	ENSDLEG00000014683 #16	OPHN1 (ENSDLEG00000014700) #17	YIPF6 (ENSDLEG00000014821) #18	STARD8 (ENSDLEG00000014834) #19	ENSDLEG00000014858 #20	ENSDLEG00000014876 #20	ENSDLEG00000014880	PJA1 (ENSDLEG00000014891) #21	ENSDLEG00000014895	FAM155B (ENSDLEG00000014915) #22	ENSDLEG00000014923	EDA (ENSDLEG00000014935) #23	AWAT2 (ENSDLEG00000014968) #24	OTUD6A (ENSDLEG00000015033) #25	ENSDLEG00000015058 #26	P2RY4 (ENSDLEG00000015071) #28	ARR3 (ENSDLEG00000015084) #29	PDZD11 (ENSDLEG00000015114) #30	KIF4A (ENSDLEG00000015138) #31	ENSDLEG00000015180 ##32	GDPD2 (ENSDLEG00000015195) #33	ENSDLEG00000015578 #34	TEX11 (ENSDLEG00000008003) #35	SLC7A3 (ENSDLEG00000008236) #36	SNX12 (ENSDLEG00000008272)
Vaquita	MODERN SPECIES	34	ZC3H12B (ENSPSNG00000020301) #7	LAS1L (ENSPSNG00000020353) #8	MSN (ENSPSNG00000020415) #9	VSIG4 (ENSPSNG00000020471) #11	ENSPSNG00000020637	HEPH (ENSPSNG00000020688) #12	EDA2R (ENSPSNG00000020846) #13	AR (ENSPSNG00000013551) #15	OPHN1 (ENSPSNG00000014060) #17	YIPF6 (ENSPSNG00000014380) #18	STARD8 (ENSPSNG00000014521) #19	EFNB1 (ENSPSNG00000014578) #20	ENSPSNG00000014632	PJA1 (ENSPSNG00000014701) #21	ENSPSNG00000014751	NALF2 (ENSPSNG00000014821) #22	ENSPSNG00000014880	EDA (ENSPSNG00000014912) #23	AWAT2 (ENSPSNG00000015304) #24	OTUD6A (ENSPSNG00000015527) #25	ENSPSNG00000015550 #26	P2RY4 (ENSPSNG00000015732) #28	ARR3 (ENSPSNG00000015831) #29	PDZD11 (ENSPSNG00000016382) #30	KIF4A (ENSPSNG00000016454) #31	GDPD2 (ENSPSNG00000016544) #33	DLG3 (ENSPSNG00000016885) #34	ENSPSNG00000017458	TEX11 (ENSPSNG00000017527) #35	SLC7A3 (ENSPSNG00000017602) #36	SNX12 (ENSPSNG00000017640)
Dolphin	MODERN SPECIES	245																NALF2 (ENSTTRG00000000525) #22
Blue whale	MODERN SPECIES	40	ZC4H2 (ENSBMSG00010016215)	ZC3H12B (ENSBMSG00010016325) #7	LAS1L (ENSBMSG00010016351) #8	MSN (ENSBMSG00010016394) #9	VSIG4 (ENSBMSG00010016469) #11	HEPH (ENSBMSG00010016714) #12	ENSBMSG00010017291	ENSBMSG00010017314	EDA2R (ENSBMSG00010017338) #13	AR (ENSBMSG00010017403) #15	ENSBMSG00010017616 #17	YIPF6 (ENSBMSG00010017661) #18	STARD8 (ENSBMSG00010017725) #19	EFNB1 (ENSBMSG00010017761) #20	PJA1 (ENSBMSG00010017812) #21	NALF2 (ENSBMSG00010017839) #22	EDA (ENSBMSG00010017861) #23	AWAT2 (ENSBMSG00010017987) #24	ENSBMSG00010018011	OTUD6A (ENSBMSG00010018026) #25	DGAT2L6 (ENSBMSG00010018039) #27	P2RY4 (ENSBMSG00010018084) #28	ARR3 (ENSBMSG00010018119) #29	PDZD11 (ENSBMSG00010018341) #30	KIF4A (ENSBMSG00010018369) #31	GDPD2 (ENSBMSG00010018409) #33	DLG3 (ENSBMSG00010018530) #34	ENSBMSG00010019038	SLC7A3 (ENSBMSG00010019048) #36	ENSBMSG00010019077 #37	SNX12 (ENSBMSG00010019093)
Pecora	ANCESTRAL SPECIES	27	ENSGT00390000003022	ENSGT00390000014995	ENSGT00940000158722	ENSGT00940000158262	ENSGT00960000192921	ENSGT00940000153460.c.a	ENSGT00940000162231	ENSGT00940000153259.a.a.a #13	ENSGT00940000156229.k.b	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00940000166108	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414.kb #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35
Percora_a	ANCESTRAL SPECIES	22	ENSGT00390000003022	ENSGT00390000014995	ENSGT00940000158722	ENSGT00940000158262	ENSGT00960000192921	ENSGT00940000153460.c.a	ENSGT00940000162231	ENSGT00940000153259.a.a.a #13	ENSGT00940000156229.k.b	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00940000166108	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414.kb #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35
Bovidae	ANCESTRAL SPECIES	23	ENSGT00390000003022	ENSGT00390000014995	ENSGT00940000158722	ENSGT00940000158262	ENSGT00960000192921	ENSGT00940000153460.c.a	ENSGT00940000162231	ENSGT00940000153259.a.a.a #13	ENSGT00940000156229.k.b	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00940000166108	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414.kb #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35
Caprinae	ANCESTRAL SPECIES	50											ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000161362 #22	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414.kb #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35	ENSGT00940000154651 #36	ENSGT00940000153609.a
Rambouillet Sheep	MODERN SPECIES	205	CHST7 (ENSOARG00020019529)	ENSOARG00020019548	ENSOARG00020019579	EDA2R (ENSOARG00020019617) #13	ENSOARG00020019764	ENSOARG00020019802	ENSOARG00020019814	ENSOARG00020019836	AR (ENSOARG00020019886) #15	ENSOARG00020020168	ENSOARG00020020194	OPHN1 (ENSOARG00020020275) #17	YIPF6 (ENSOARG00020021042) #18	STARD8 (ENSOARG00020021176) #19	EFNB1 (ENSOARG00020021287) #20	NALF2 (ENSOARG00020021401) #22	EDA (ENSOARG00020021437) #23	OTUD6A (ENSOARG00020021612) #25	ENSOARG00020021633 #26	P2RY4 (ENSOARG00020021790) #28	ARR3 (ENSOARG00020021819) #29	PDZD11 (ENSOARG00020022029) #30	KIF4A (ENSOARG00020022063) #31	DLG3 (ENSOARG00020022301) #34	TEX11 (ENSOARG00020022951) #35	SLC7A3 (ENSOARG00020023234) #36	ENSOARG00020023285	ENSOARG00020023309	FOXO4 (ENSOARG00020023355)	CXorf65 (ENSOARG00020023392)	IL2RG (ENSOARG00020023444)
Goat	MODERN SPECIES	29	ENSCHIG00000011877	ENSCHIG00000020347	ENSCHIG00000017637	ENSCHIG00000006759	BMP15 (ENSCHIG00000015206)	ENSCHIG00000019459	ENSCHIG00000019129	MAGED1 (ENSCHIG00000016796)	ENSCHIG00000003303	AR (ENSCHIG00000021567) #15	OPHN1 (ENSCHIG00000019770) #17	YIPF6 (ENSCHIG00000019783) #18	STARD8 (ENSCHIG00000015274) #19	PJA1 (ENSCHIG00000004788) #21	ENSCHIG00000015812	NALF2 (ENSCHIG00000025396) #22	CDX4 (ENSCHIG00000014825)	EDA (ENSCHIG00000010851) #23	AWAT2 (ENSCHIG00000019668) #24	OTUD6A (ENSCHIG00000019562) #25	ENSCHIG00000011293 #26	DGAT2L6 (ENSCHIG00000002575) #27	AWAT1 (ENSCHIG00000003708) ##27	P2RY4 (ENSCHIG00000024021) #28	ARR3 (ENSCHIG00000019764) #29	ENSCHIG00000020300 #30	KIF4A (ENSCHIG00000017710) #31	GDPD2 (ENSCHIG00000024876) #33	DLG3 (ENSCHIG00000017006) #34	SLC7A3 (ENSCHIG00000012862) #36	ENSCHIG00000021613
Bovinae	ANCESTRAL SPECIES	38	ENSGT00390000003022	ENSGT00390000014995	ENSGT00940000158722	ENSGT00940000158262	ENSGT00960000192921	ENSGT00940000153460.c.a	ENSGT00940000162231	ENSGT00940000153259.a.a.a #13	ENSGT00940000156229.k.b	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00940000166108	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414.kb #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35
Bos	ANCESTRAL SPECIES	30	ENSGT00940000158722	ENSGT01100000263991	ENSGT00940000158262	ENSGT00960000192921	ENSGT00940000153460.c.a	ENSGT00940000162231	ENSGT01100000263480.a.a.a.a.b.b.b.a.a.a.b	ENSGT00940000153259.a.a.a #13	ENSGT00940000156229.k.b	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00940000166108	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414.kb #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35
Bos_a	ANCESTRAL SPECIES	19											ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414.kb #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35	ENSGT00940000154651 #36
Wild yak	MODERN SPECIES	790															EFNB1 (ENSBMUG00000016218) #20	ENSBMUG00000016249 #22	EDA (ENSBMUG00000016296) #23	AWAT2 (ENSBMUG00000016343) #24	OTUD6A (ENSBMUG00000016357) #25	ENSBMUG00000016361 #26	ENSBMUG00000016381	DGAT2L6 (ENSBMUG00000016400) #27
Domestic yak	MODERN SPECIES	69	RP2 (ENSBGRG00000010488)	ENSBGRG00000010392	ENSBGRG00000010361	SLC9A7 (ENSBGRG00000010277)	CHST7 (ENSBGRG00000010248)	ENSBGRG00000010164	EDA2R (ENSBGRG00000010071) #13	AR (ENSBGRG00000010012) #15	ENSBGRG00000009995	ENSBGRG00000009984	OPHN1 (ENSBGRG00000009900) #17	YIPF6 (ENSBGRG00000009673) #18	STARD8 (ENSBGRG00000009592) #19	EFNB1 (ENSBGRG00000009492) #20	PJA1 (ENSBGRG00000009436) #21	NALF2 (ENSBGRG00000009407) #22	EDA (ENSBGRG00000009159) #23	AWAT2 (ENSBGRG00000009086) #24	OTUD6A (ENSBGRG00000009074) #25	DGAT2L6 (ENSBGRG00000008939) #27	AWAT1 (ENSBGRG00000008836) ##27	P2RY4 (ENSBGRG00000008823) #28	ARR3 (ENSBGRG00000008581) #29	ENSBGRG00000008523	PDZD11 (ENSBGRG00000008468) #30	KIF4A (ENSBGRG00000008356) #31	GDPD2 (ENSBGRG00000008136) #33	ENSBGRG00000008066 #34	DLG3 (ENSBGRG00000007926) #34	TEX11 (ENSBGRG00000007261) #35	SLC7A3 (ENSBGRG00000007140) #36
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000158722	ENSGT01100000263991	ENSGT00940000158262	ENSGT00960000192921	ENSGT00940000153460.c.a	ENSGT00940000162231	ENSGT01100000263480.a.a.a.a.b.b.b.a.a.a.b	ENSGT00940000153259.a.a.a #13	ENSGT00940000156229.k.b	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00940000166108	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414.kb #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35
Cow	MODERN SPECIES	177	ENSBTAG00000048907	SLC9A7 (ENSBTAG00000003290)	CHST7 (ENSBTAG00000007654)	ENSBTAG00000047411	ENSBTAG00000050199	EDA2R (ENSBTAG00000047326) #13	ENSBTAG00000054703	AR (ENSBTAG00000022255) #15	ENSBTAG00000049792	ENSBTAG00000052786	OPHN1 (ENSBTAG00000055120) #17	YIPF6 (ENSBTAG00000001977) #18	STARD8 (ENSBTAG00000033702) #19	EFNB1 (ENSBTAG00000015801) #20	PJA1 (ENSBTAG00000021026) #21	NALF2 (ENSBTAG00000011310) #22	ENSBTAG00000022278	EDA (ENSBTAG00000012543) #23	AWAT2 (ENSBTAG00000012281) #24	ENSBTAG00000054566 #25	IGBP1 (ENSBTAG00000007797) #26	DGAT2L6 (ENSBTAG00000007798) #27	AWAT1 (ENSBTAG00000018839) ##27	P2RY4 (ENSBTAG00000040541) #28	ARR3 (ENSBTAG00000012856) #29	ENSBTAG00000054409	PDZD11 (ENSBTAG00000012860) #30	KIF4A (ENSBTAG00000012861) #31	GDPD2 (ENSBTAG00000012863) #33	DLG3 (ENSBTAG00000011291) #34	TEX11 (ENSBTAG00000016272) #35
Hybrid Bos Indicus	MODERN SPECIES	315	ENSBIXG00005029612	ENSBIXG00005029626	ENSBIXG00005029633	ENSBIXG00005029640	EDA2R (ENSBIXG00005029663) #13	ENSBIXG00005029675	AR (ENSBIXG00005029714) #15	OPHN1 (ENSBIXG00005029783) #17	ENSBIXG00005029804	ENSBIXG00005029812	YIPF6 (ENSBIXG00005029178) #18	ENSBIXG00005029160	STARD8 (ENSBIXG00005029139) #19	EFNB1 (ENSBIXG00005001944) #20	PJA1 (ENSBIXG00005029035) #21	NALF2 (ENSBIXG00005029021) #22	ENSBIXG00005002069	EDA (ENSBIXG00005028984) #23	AWAT2 (ENSBIXG00005002108) #24	OTUD6A (ENSBIXG00005028976) #25	ENSBIXG00005028971 #26	DGAT2L6 (ENSBIXG00005028948) #27	AWAT1 (ENSBIXG00005028944) ##27	P2RY4 (ENSBIXG00005028925) #28	ARR3 (ENSBIXG00005028912) #29	ENSBIXG00005005007	PDZD11 (ENSBIXG00005002331) #30	KIF4A (ENSBIXG00005028782) #31	GDPD2 (ENSBIXG00005002361) #33	DLG3 (ENSBIXG00005028642) #34	TEX11 (ENSBIXG00005004874) #35
Siberian musk deer	MODERN SPECIES	237	RP2 (ENSMMSG00000000292)	ENSMMSG00000000307	SLC9A7 (ENSMMSG00000000330)	CHST7 (ENSMMSG00000000398)	ENSMMSG00000000418	EDA2R (ENSMMSG00000000426) #13	ENSMMSG00000000444	ENSMMSG00000000463	ENSMMSG00000000494	AR (ENSMMSG00000000530) #15	OPHN1 (ENSMMSG00000000663) #17	YIPF6 (ENSMMSG00000000899) #18	STARD8 (ENSMMSG00000000955) #19	EFNB1 (ENSMMSG00000000987) #20	ENSMMSG00000001019	NALF2 (ENSMMSG00000001030) #22	ENSMMSG00000001041	EDA (ENSMMSG00000001059) #23	AWAT2 (ENSMMSG00000001128) #24	OTUD6A (ENSMMSG00000001154) #25	ENSMMSG00000001165 #26	DGAT2L6 (ENSMMSG00000001184) #27	AWAT1 (ENSMMSG00000001211) ##27	P2RY4 (ENSMMSG00000001232) #28	ARR3 (ENSMMSG00000001258) #29	PDZD11 (ENSMMSG00000001350) #30	KIF4A (ENSMMSG00000001377) #31	GDPD2 (ENSMMSG00000001434) #33	DLG3 (ENSMMSG00000001507) #34	TEX11 (ENSMMSG00000001756) #35	SLC7A3 (ENSMMSG00000001897) #36
Camelidae	ANCESTRAL SPECIES	43	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00390000018389	ENSGT00940000159316 #7	ENSGT00390000014785 #8	ENSGT01090000260082.d.a.a.a.a #9	ENSGT00390000001432 #11	ENSGT00940000158517 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000161362 #22	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414 #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT00950000182887.C.b.b #29	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35	ENSGT00940000154651 #36	ENSGT00940000159334
Arabian camel	MODERN SPECIES	204	AMER1 (ENSCDRG00005012630)	ASB12 (ENSCDRG00005012646)	ENSCDRG00005012714	ZC4H2 (ENSCDRG00005012961)	ZC3H12B (ENSCDRG00005013044) #7	LAS1L (ENSCDRG00005013086) #8	ENSCDRG00005013163 #9	VSIG4 (ENSCDRG00005013180) #11	HEPH (ENSCDRG00005013323) #12	EDA2R (ENSCDRG00005013728) #13	AR (ENSCDRG00005013801) #15	OPHN1 (ENSCDRG00005014282) #17	YIPF6 (ENSCDRG00005014453) #18	STARD8 (ENSCDRG00005014577) #19	EFNB1 (ENSCDRG00005014695) #20	NALF2 (ENSCDRG00005014800) #22	EDA (ENSCDRG00005014849) #23	AWAT2 (ENSCDRG00005014987) #24	OTUD6A (ENSCDRG00005015044) #25	ENSCDRG00005015071 #26	DGAT2L6 (ENSCDRG00005015145) #27	AWAT1 (ENSCDRG00005015201) ##27	ARR3 (ENSCDRG00005015277) #29	PDZD11 (ENSCDRG00005015506) #30	KIF4A (ENSCDRG00005015536) #31	GDPD2 (ENSCDRG00005015607) #33	DLG3 (ENSCDRG00005015796) #34	TEX11 (ENSCDRG00005015952) #35	SLC7A3 (ENSCDRG00005016266) #36	FOXO4 (ENSCDRG00005016475)	ENSCDRG00005016579
Suina	ANCESTRAL SPECIES	7	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316 #7	ENSGT00390000014785 #8	ENSGT01090000260082.d.a.a.a.a #9	ENSGT00390000001432 #11	ENSGT00940000158517 #12	ENSGT00940000155516 #15	ENSGT00940000160157 #17	ENSGT00940000153168.A #18	ENSGT00950000183061.a.a.a.a.b #19	ENSGT00940000160128 #20	ENSGT00940000154585.b #21	ENSGT00940000161362 #22	ENSGT00730000111220 #23	ENSGT01030000234582.f.a.a.a.b #24	ENSGT00940000163556 #25	ENSGT00390000002414 #26	ENSGT01030000234582.f.a.a.a.a #27	ENSGT01030000234582.f.a.a.b ##27	ENSGT01030000234621.C.a.a.a #28	ENSGT00950000182887.C.b.b #29	ENSGT00940000153222.a.b.b.b.b #30	ENSGT00940000158195 #31	ENSGT00940000159625 #33	ENSGT00940000159565 #34	ENSGT00390000006492 #35	ENSGT00940000154651 #36	ENSGT00940000153609.a
Chacoan peccary	MODERN SPECIES	22																NALF2 (ENSCWAG00000000983) #22	ENSCWAG00000000974	ENSCWAG00000000965	EDA (ENSCWAG00000000948) #23	AWAT2 (ENSCWAG00000000928) #24	OTUD6A (ENSCWAG00000000917) #25	ENSCWAG00000000889 #26	DGAT2L6 (ENSCWAG00000000857) #27	AWAT1 (ENSCWAG00000000839) ##27	P2RY4 (ENSCWAG00000000824) #28	ARR3 (ENSCWAG00000000733) #29	PDZD11 (ENSCWAG00000000652) #30	KIF4A (ENSCWAG00000000592) #31	GDPD2 (ENSCWAG00000000531) #33	DLG3 (ENSCWAG00000000266) #34	TEX11 (ENSCWAG00000000107) #35
Pig	MODERN SPECIES	300	ZC4H2 (ENSSSCG00000027657)	ZC3H12B (ENSSSCG00000012367) #7	LAS1L (ENSSSCG00000012366) #8	MSN (ENSSSCG00000012365) #9	VSIG4 (ENSSSCG00000035170) #11	HEPH (ENSSSCG00000012363) #12	ENSSSCG00000052154	AR (ENSSSCG00000012371) #15	OPHN1 (ENSSSCG00000022676) #17	ENSSSCG00000044044	YIPF6 (ENSSSCG00000028336) #18	STARD8 (ENSSSCG00000012828) #19	EFNB1 (ENSSSCG00000032728) #20	PJA1 (ENSSSCG00000024463) #21	ENSSSCG00000040612	NALF2 (ENSSSCG00000012386) #22	EDA (ENSSSCG00000021647) #23	ENSSSCG00000063210	AWAT2 (ENSSSCG00000012384) #24	OTUD6A (ENSSSCG00000012383) #25	ENSSSCG00000012382 #26	DGAT2L6 (ENSSSCG00000012381) #27	P2RY4 (ENSSSCG00000012380) #28	ARR3 (ENSSSCG00000012379) #29	PDZD11 (ENSSSCG00000012378) #30	KIF4A (ENSSSCG00000012377) #31	GDPD2 (ENSSSCG00000012376) #33	DLG3 (ENSSSCG00000012375) #34	TEX11 (ENSSSCG00000030850) #35	ENSSSCG00000025388	SLC7A3 (ENSSSCG00000024346) #36