Glires	ANCESTRAL SPECIES	2	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000185720	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975	ENSGT00940000160131	ENSGT00940000162416	ENSGT00940000161334
Lagomorpha	ANCESTRAL SPECIES	636																ENSGT00940000160964 #22	ENSGT00940000163238 #23
Rabbit	MODERN SPECIES	760																B3GALT5 (ENSOCUG00000011766) #22	ENSOCUG00000006779 #23
Pika	MODERN SPECIES	6905																B3GALT5 (ENSOPRG00000009754) #22
Rodentia	ANCESTRAL SPECIES	2	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000185720	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975	ENSGT00940000160131	ENSGT00940000162416	ENSGT00940000161334
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000185720	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975	ENSGT00940000160131	ENSGT00940000162416	ENSGT00940000161334
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000185720	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975	ENSGT00940000160131	ENSGT00940000162416	ENSGT00940000161334
Marmotini	ANCESTRAL SPECIES	13	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000185720	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975	ENSGT00940000160131	ENSGT00940000162416	ENSGT00960000188749
Alpin marmot	MODERN SPECIES	4	TTC3 (ENSMMMG00000003016)	VPS26C (ENSMMMG00000003435)	DYRK1A (ENSMMMG00000003463)	KCNJ6 (ENSMMMG00000003548)	KCNJ15 (ENSMMMG00000003594)	ERG (ENSMMMG00000003632)	ETS2 (ENSMMMG00000004068)	PSMG1 (ENSMMMG00000004106)	ENSMMMG00000004110	BRWD1 (ENSMMMG00000004116)	HMGN1 (ENSMMMG00000004197)	GET1 (ENSMMMG00000004202)	LCA5L (ENSMMMG00000004259)	SH3BGR (ENSMMMG00000004305)	ENSMMMG00000004462	B3GALT5 (ENSMMMG00000004484) #22	ENSMMMG00000004498 #23	PCP4 (ENSMMMG00000004533)	DSCAM (ENSMMMG00000004573)	BACE2 (ENSMMMG00000004641)	FAM3B (ENSMMMG00000004645)	MX1 (ENSMMMG00000004765)	TMPRSS2 (ENSMMMG00000010132)	RIPK4 (ENSMMMG00000010156)	PRDM15 (ENSMMMG00000010191)	C2CD2 (ENSMMMG00000010233)	ENSMMMG00000010266	UMODL1 (ENSMMMG00000010282)	ABCG1 (ENSMMMG00000010456)	TFF3 (ENSMMMG00000010483)	ENSMMMG00000010491
Marmotini_b	ANCESTRAL SPECIES	30	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155686	ENSGT00950000183004.a.b.a.b	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975	ENSGT00940000160131	ENSGT00940000162416	ENSGT00960000188749
Arctic ground squirrel	MODERN SPECIES	212			VPS26C (ENSUPAG00010020169)	DYRK1A (ENSUPAG00010020176)	KCNJ6 (ENSUPAG00010020183)	KCNJ15 (ENSUPAG00010020189)	ERG (ENSUPAG00010020197)	ETS2 (ENSUPAG00010020230)	BRWD1 (ENSUPAG00010020246)	ENSUPAG00010020321	ENSUPAG00010020326	ENSUPAG00010020344	LCA5L (ENSUPAG00010020362)	SH3BGR (ENSUPAG00010020382)	ENSUPAG00010020395	B3GALT5 (ENSUPAG00010020398) #22	ENSUPAG00010020403 #23	PCP4 (ENSUPAG00010020435)	DSCAM (ENSUPAG00010020438)	BACE2 (ENSUPAG00010020456)
Squirrel	MODERN SPECIES	100	HLCS (ENSSTOG00000015476)	ENSSTOG00000031463	PIGP (ENSSTOG00000010943)	ENSSTOG00000004274	ENSSTOG00000020762	DYRK1A (ENSSTOG00000016151)	KCNJ6 (ENSSTOG00000016154)	KCNJ15 (ENSSTOG00000000052)	ERG (ENSSTOG00000025814)	ETS2 (ENSSTOG00000024655)	PSMG1 (ENSSTOG00000007084)	BRWD1 (ENSSTOG00000027149)	HMGN1 (ENSSTOG00000030815)	GET1 (ENSSTOG00000012736)	SH3BGR (ENSSTOG00000020100)	B3GALT5 (ENSSTOG00000012749) #22	ENSSTOG00000002986 #23	PCP4 (ENSSTOG00000033674)	DSCAM (ENSSTOG00000004849)	BACE2 (ENSSTOG00000011669)	MX1 (ENSSTOG00000012846)	FAM3B (ENSSTOG00000006382)	TMPRSS2 (ENSSTOG00000012868)	RIPK4 (ENSSTOG00000020499)	PRDM15 (ENSSTOG00000000262)	C2CD2 (ENSSTOG00000015690)	ZBTB21 (ENSSTOG00000010003)	UMODL1 (ENSSTOG00000027158)	ABCG1 (ENSSTOG00000027580)	TFF3 (ENSSTOG00000000593)	TMPRSS3 (ENSSTOG00000024702)
Eurasian red squirrel	MODERN SPECIES	1	ENSSVLG00005020036	ENSSVLG00005019788	ENSSVLG00005019993	DYRK1A (ENSSVLG00005019571)	KCNJ6 (ENSSVLG00005019383)	KCNJ15 (ENSSVLG00005019329)	ERG (ENSSVLG00005018996)	ETS2 (ENSSVLG00005018858)	PSMG1 (ENSSVLG00005018720)	ENSSVLG00005018680	ENSSVLG00005018655	ENSSVLG00005018529	GET1 (ENSSVLG00005018408)	LCA5L (ENSSVLG00005018302)	SH3BGR (ENSSVLG00005018209)	B3GALT5 (ENSSVLG00005018186) #22	ENSSVLG00005018094 #23	PCP4 (ENSSVLG00005018045)	DSCAM (ENSSVLG00005017352)	BACE2 (ENSSVLG00005017213)	ENSSVLG00005016342	FAM3B (ENSSVLG00005016099)	ENSSVLG00005015978	TMPRSS2 (ENSSVLG00005015845)	RIPK4 (ENSSVLG00005015741)	PRDM15 (ENSSVLG00005015213)	C2CD2 (ENSSVLG00005015130)	ZBTB21 (ENSSVLG00005015081)	UMODL1 (ENSSVLG00005014644)	ABCG1 (ENSSVLG00005014331)	ENSSVLG00005014286
Hystricomorpha	ANCESTRAL SPECIES	18	ENSGT00730000111429	ENSGT00390000013771.bb	ENSGT00940000154465.C.w	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b.m	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23
Naked mole-rat female	MODERN SPECIES	11	KCNJ6 (ENSHGLG00000018429)	KCNJ15 (ENSHGLG00000046846)	ERG (ENSHGLG00000017640)	ENSHGLG00000042102	ETS2 (ENSHGLG00000017830)	ENSHGLG00000045422	PSMG1 (ENSHGLG00000017867)	ENSHGLG00000017831	ENSHGLG00000042854	ENSHGLG00000034155	ENSHGLG00000013690	GET1 (ENSHGLG00000012972)	ENSHGLG00000015714	ENSHGLG00000044589	SH3BGR (ENSHGLG00000015469)	ENSHGLG00000040175 #22	ENSHGLG00000015085 #23	ENSHGLG00000045024	ENSHGLG00000014926	ENSHGLG00000033972	ENSHGLG00000038478	ENSHGLG00000015303	ENSHGLG00000014759	ENSHGLG00000040770
Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT00730000111429	ENSGT00390000013771.bb	ENSGT00940000154465.C.w	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b.m	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT00390000011821.a	ENSGT00390000008490	ENSGT00940000154989	ENSGT00940000160159	ENSGT00950000183152.B.c.a	ENSGT00510000047027	ENSGT00940000159505.x	ENSGT00390000012196	ENSGT00390000012174	ENSGT00940000155587.a.b	ENSGT00940000159245	ENSGT00940000157240	ENSGT00940000160841	ENSGT00940000158589
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT00730000111429	ENSGT00390000013771.bb	ENSGT00940000154465.C.w	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b.m	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT00390000011821.a	ENSGT00390000008490	ENSGT00940000154989	ENSGT00940000160159	ENSGT00950000183152.B.c.a	ENSGT00510000047027	ENSGT00940000159505.x	ENSGT00390000012196	ENSGT00390000012174	ENSGT00940000155587.a.b	ENSGT00940000159245	ENSGT00940000157240	ENSGT00940000160841	ENSGT00940000158589
Long-tailed chinchilla	MODERN SPECIES	114	ENSCLAG00000008569	ENSCLAG00000009431	VPS26C (ENSCLAG00000010591)	DYRK1A (ENSCLAG00000011834)	KCNJ6 (ENSCLAG00000005671)	ENSCLAG00000008450	KCNJ15 (ENSCLAG00000007017)	ERG (ENSCLAG00000005608)	ETS2 (ENSCLAG00000005803)	PSMG1 (ENSCLAG00000006759)	ENSCLAG00000004395	HMGN1 (ENSCLAG00000005744)	GET1 (ENSCLAG00000005886)	SH3BGR (ENSCLAG00000008599)	ENSCLAG00000008933	B3GALT5 (ENSCLAG00000009203) #22	ENSCLAG00000006218 #23	ENSCLAG00000008829	RRP1B (ENSCLAG00000005622)	HSF2BP (ENSCLAG00000006525)	SIK1 (ENSCLAG00000004717)	CRYAA (ENSCLAG00000008715)	U2AF1 (ENSCLAG00000009589)	CBS (ENSCLAG00000012158)	PKNOX1 (ENSCLAG00000009292)	NDUFV3 (ENSCLAG00000010460)	WDR4 (ENSCLAG00000004584)	PDE9A (ENSCLAG00000005531)	SLC37A1 (ENSCLAG00000006046)	RSPH1 (ENSCLAG00000005001)	UBASH3A (ENSCLAG00000005633)
Guinea pig	MODERN SPECIES	90	ENSCPOG00000032684	ENSCPOG00000007158	VPS26C (ENSCPOG00000013144)	DYRK1A (ENSCPOG00000037211)	KCNJ6 (ENSCPOG00000009568)	KCNJ15 (ENSCPOG00000019502)	ERG (ENSCPOG00000007484)	ETS2 (ENSCPOG00000015014)	PSMG1 (ENSCPOG00000027117)	ENSCPOG00000010784	ENSCPOG00000039624	HMGN1 (ENSCPOG00000033135)	GET1 (ENSCPOG00000040238)	LCA5L (ENSCPOG00000021836)	SH3BGR (ENSCPOG00000003488)	B3GALT5 (ENSCPOG00000035318) #22	ENSCPOG00000004718 #23	RRP1B (ENSCPOG00000002396)	HSF2BP (ENSCPOG00000002394)	SIK1 (ENSCPOG00000026214)	Cryaa (ENSCPOG00000004350)	U2AF1 (ENSCPOG00000004893)	CBS (ENSCPOG00000007817)	PKNOX1 (ENSCPOG00000039252)	ENSCPOG00000035722	WDR4 (ENSCPOG00000037037)	PDE9A (ENSCPOG00000014197)	SLC37A1 (ENSCPOG00000011616)	RSPH1 (ENSCPOG00000002266)	UBASH3A (ENSCPOG00000013429)	TMPRSS3 (ENSCPOG00000012057)
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975	ENSGT00940000160131	ENSGT00940000162416	ENSGT00940000161334
Kangaroo rat	MODERN SPECIES	422								Ets2 (ENSDORG00000006046)	Psmg1 (ENSDORG00000024369)	ENSDORG00000028290	ENSDORG00000023919	Hmgn1 (ENSDORG00000024516)	ENSDORG00000023446	Lca5l (ENSDORG00000016061)	ENSDORG00000010100	B3galt5 (ENSDORG00000027270) #22	Igsf5 (ENSDORG00000005042) #23	ENSDORG00000007355	ENSDORG00000025922	Dscam (ENSDORG00000002348)	ENSDORG00000030205	Bace2 (ENSDORG00000010948)	ENSDORG00000027605	Fam3b (ENSDORG00000011095)	ENSDORG00000003337	Tmprss2 (ENSDORG00000003340)	Ripk4 (ENSDORG00000008414)	Prdm15 (ENSDORG00000009748)	C2cd2 (ENSDORG00000000978)	ENSDORG00000028102	Zbtb21 (ENSDORG00000000981)
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975	ENSGT00940000160131	ENSGT00940000162416
Muroidea	ANCESTRAL SPECIES	11	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155686	ENSGT00950000183004.a.b.a.b	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000159975	ENSGT00940000160131	ENSGT00940000162416
Muroidea_A	ANCESTRAL SPECIES	17	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Cricetidae	ANCESTRAL SPECIES	16	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Cricetinae	ANCESTRAL SPECIES	10	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000153805.q.b.a.a.a.a.a.a.a.a.c.a.a
Chinese hamster chok1gshd	MODERN SPECIES	382	ENSCGRG00001016611	Ttc3 (ENSCGRG00001022857)	Vps26c (ENSCGRG00001014527)	Dyrk1a (ENSCGRG00001000504)	Kcnj6 (ENSCGRG00001008563)	Kcnj15 (ENSCGRG00001014785)	Erg (ENSCGRG00001005751)	Ets2 (ENSCGRG00001019241)	Psmg1 (ENSCGRG00001023463)	Brwd1 (ENSCGRG00001019901)	Hmgn1 (ENSCGRG00001006425)	ENSCGRG00001015026	ENSCGRG00001008454	Lca5l (ENSCGRG00001001508)	ENSCGRG00001018634	B3galt5 (ENSCGRG00001003465) #22	Igsf5 (ENSCGRG00001017358) #23	ENSCGRG00001011223	Dscam (ENSCGRG00001020907)	Bace2 (ENSCGRG00001006826)	Mx1 (ENSCGRG00001009938)	Fam3b (ENSCGRG00001021679)	Mx2 (ENSCGRG00001004304)	Tmprss2 (ENSCGRG00001008718)	ENSCGRG00001011892	Ripk4 (ENSCGRG00001021625)	Prdm15 (ENSCGRG00001012883)	C2cd2 (ENSCGRG00001018582)	Zbtb21 (ENSCGRG00001012061)	ENSCGRG00001016488
Cricetidae_B	ANCESTRAL SPECIES	13	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Northern American deer mouse	MODERN SPECIES	3	Pigp (ENSPEMG00000014214)	Ttc3 (ENSPEMG00000024827)	Vps26c (ENSPEMG00000016213)	Dyrk1a (ENSPEMG00000017620)	Kcnj6 (ENSPEMG00000000223)	Kcnj15 (ENSPEMG00000001507)	Erg (ENSPEMG00000008582)	Ets2 (ENSPEMG00000012273)	ENSPEMG00000031015	Psmg1 (ENSPEMG00000010416)	Brwd1 (ENSPEMG00000014898)	ENSPEMG00000020156	ENSPEMG00000027492	Lca5l (ENSPEMG00000020214)	ENSPEMG00000003252	B3galt5 (ENSPEMG00000006922) #22	Igsf5 (ENSPEMG00000007617) #23	Itgb2l (ENSPEMG00000009654)	ENSPEMG00000029164	Dscam (ENSPEMG00000013979)	Bace2 (ENSPEMG00000015582)	ENSPEMG00000015989	Fam3b (ENSPEMG00000017357)	ENSPEMG00000014739	ENSPEMG00000027181	ENSPEMG00000024660	ENSPEMG00000027256	Tmprss2 (ENSPEMG00000007177)	Ripk4 (ENSPEMG00000016616)	Prdm15 (ENSPEMG00000011962)	C2cd2 (ENSPEMG00000014730)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	265																ENSMOCG00000013011 #22
Prairie vole	MODERN SPECIES	7	Ttc3 (ENSMOCG00000016472)	Vps26c (ENSMOCG00000001783)	Dyrk1a (ENSMOCG00000021125)	Kcnj6 (ENSMOCG00000021427)	Kcnj15 (ENSMOCG00000022139)	Erg (ENSMOCG00000016605)	Ets2 (ENSMOCG00000011500)	Psmg1 (ENSMOCG00000019906)	ENSMOCG00000017915	ENSMOCG00000005141	ENSMOCG00000016951	ENSMOCG00000018055	ENSMOCG00000016062	Lca5l (ENSMOCG00000008785)	ENSMOCG00000000644	ENSMOCG00000012887 #22	Or4c117 (ENSMOCG00000022094)	ENSMOCG00000007303	Or4a2 (ENSMOCG00000009982)	Or4a68 (ENSMOCG00000003063)	Or4a72 (ENSMOCG00000003943)	Parp9 (ENSMOCG00000015450)	Kpna1 (ENSMOCG00000006140)	Golgb1 (ENSMOCG00000009516)	Iqcb1 (ENSMOCG00000018317)	Eaf2 (ENSMOCG00000015355)	ENSMOCG00000010965	Ildr1 (ENSMOCG00000020672)	Cd86 (ENSMOCG00000018575)	Casr (ENSMOCG00000010550)	ENSMOCG00000004379
Murinae	ANCESTRAL SPECIES	13	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Mus	ANCESTRAL SPECIES	13	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Mus_A	ANCESTRAL SPECIES	18	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A.u.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Mus_B	ANCESTRAL SPECIES	18	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A.u.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Mouse	MODERN SPECIES	7	Ripply3 (ENSMUSG00000022941)	Pigp (ENSMUSG00000022940)	Ttc3 (ENSMUSG00000040785)	Vps26c (ENSMUSG00000022898)	Dyrk1a (ENSMUSG00000022897)	Kcnj6 (ENSMUSG00000043301)	Kcnj15 (ENSMUSG00000062609)	Erg (ENSMUSG00000040732)	Ets2 (ENSMUSG00000022895)	Psmg1 (ENSMUSG00000022913)	Brwd1 (ENSMUSG00000022914)	Hmgn1 (ENSMUSG00000040681)	Get1 (ENSMUSG00000023147)	Lca5l (ENSMUSG00000045275)	Sh3bgr (ENSMUSG00000040666)	B3galt5 (ENSMUSG00000074892) #22	Igsf5 (ENSMUSG00000000159) #23	Gm49948 (ENSMUSG00000117081)	Itgb2l (ENSMUSG00000000157)	Pcp4 (ENSMUSG00000090223)	Dscam (ENSMUSG00000050272)	Bace2 (ENSMUSG00000040605)	Mx1 (ENSMUSG00000000386)	Fam3b (ENSMUSG00000022938)	Mx2 (ENSMUSG00000023341)	Tmprss2 (ENSMUSG00000000385)	Ripk4 (ENSMUSG00000005251)	Prdm15 (ENSMUSG00000014039)	C2cd2 (ENSMUSG00000045975)	Zbtb21 (ENSMUSG00000046962)	B230307C23Rik (ENSMUSG00000080717)
Mus_C	ANCESTRAL SPECIES	12	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662	ENSGT00940000160202	ENSGT00500000044950	ENSGT00950000183107.a.b.a	ENSGT00950000182802.A.u.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Steppe mouse	MODERN SPECIES	3075								Erg (ENSMSIG00000015868)	Ets2 (ENSMSIG00000015834)	Psmg1 (ENSMSIG00000015643)	Brwd1 (ENSMSIG00000015168)	ENSMSIG00000015102	ENSMSIG00000015019	Lca5l (ENSMSIG00000014966)	Sh3bgr (ENSMSIG00000014902)	B3galt5 (ENSMSIG00000014879) #22	Igsf5 (ENSMSIG00000014791) #23	Itgb2l (ENSMSIG00000014689)	ENSMSIG00000014678	Dscam (ENSMSIG00000014580)
spretus	MODERN SPECIES	7	Hlcs (MGP_SPRETEiJ_G0021893)	Ripply3 (MGP_SPRETEiJ_G0021894)	MGP_SPRETEiJ_G0021895	Ttc3 (MGP_SPRETEiJ_G0021896)	Vps26c (MGP_SPRETEiJ_G0021897)	Dyrk1a (MGP_SPRETEiJ_G0021898)	Kcnj6 (MGP_SPRETEiJ_G0021899)	Kcnj15 (MGP_SPRETEiJ_G0021900)	Erg (MGP_SPRETEiJ_G0021901)	Ets2 (MGP_SPRETEiJ_G0021902)	Psmg1 (MGP_SPRETEiJ_G0021903)	Hmgn1 (MGP_SPRETEiJ_G0021905)	MGP_SPRETEiJ_G0021906	Lca5l (MGP_SPRETEiJ_G0021907)	MGP_SPRETEiJ_G0021908	B3galt5 (MGP_SPRETEiJ_G0021909) #22	Igsf5 (MGP_SPRETEiJ_G0021910) #23	Itgb2l (MGP_SPRETEiJ_G0021911)	MGP_SPRETEiJ_G0021912	Dscam (MGP_SPRETEiJ_G0021913)	Bace2 (MGP_SPRETEiJ_G0021914)	MGP_SPRETEiJ_G0021915	Fam3b (MGP_SPRETEiJ_G0021916)	Tmprss2 (MGP_SPRETEiJ_G0021917)	Ripk4 (MGP_SPRETEiJ_G0021918)	Prdm15 (MGP_SPRETEiJ_G0021919)	C2cd2 (MGP_SPRETEiJ_G0021920)	Zbtb21 (MGP_SPRETEiJ_G0021921)
Ryukyu mouse	MODERN SPECIES	7	Ripply3 (MGP_CAROLIEiJ_G0020988)	MGP_CAROLIEiJ_G0020989	Ttc3 (MGP_CAROLIEiJ_G0020990)	Vps26c (MGP_CAROLIEiJ_G0020991)	Dyrk1a (MGP_CAROLIEiJ_G0020992)	Kcnj6 (MGP_CAROLIEiJ_G0020993)	Kcnj15 (MGP_CAROLIEiJ_G0020994)	Erg (MGP_CAROLIEiJ_G0020995)	Ets2 (MGP_CAROLIEiJ_G0020996)	Psmg1 (MGP_CAROLIEiJ_G0020997)	Brwd1 (MGP_CAROLIEiJ_G0020998)	MGP_CAROLIEiJ_G0020999	MGP_CAROLIEiJ_G0021000	Lca5l (MGP_CAROLIEiJ_G0021001)	MGP_CAROLIEiJ_G0021002	B3galt5 (MGP_CAROLIEiJ_G0021003) #22	Igsf5 (MGP_CAROLIEiJ_G0021004) #23	Itgb2l (MGP_CAROLIEiJ_G0021005)	MGP_CAROLIEiJ_G0021006	Dscam (MGP_CAROLIEiJ_G0021007)	Bace2 (MGP_CAROLIEiJ_G0021008)	MGP_CAROLIEiJ_G0021009	Fam3b (MGP_CAROLIEiJ_G0021010)	MGP_CAROLIEiJ_G0008949	Ripk4 (MGP_CAROLIEiJ_G0021011)	Prdm15 (MGP_CAROLIEiJ_G0021012)	C2cd2 (MGP_CAROLIEiJ_G0021013)	Zbtb21 (MGP_CAROLIEiJ_G0021014)
Shrew mouse	MODERN SPECIES	3	Ripply3 (MGP_PahariEiJ_G0016693)	MGP_PahariEiJ_G0016694	MGP_PahariEiJ_G0016695	Vps26c (MGP_PahariEiJ_G0016696)	Dyrk1a (MGP_PahariEiJ_G0016697)	Kcnj6 (MGP_PahariEiJ_G0016698)	Kcnj15 (MGP_PahariEiJ_G0016699)	Erg (MGP_PahariEiJ_G0016700)	Ets2 (MGP_PahariEiJ_G0016701)	Psmg1 (MGP_PahariEiJ_G0016702)	MGP_PahariEiJ_G0016703	MGP_PahariEiJ_G0016704	MGP_PahariEiJ_G0016705	Lca5l (MGP_PahariEiJ_G0016706)	MGP_PahariEiJ_G0016707	B3galt5 (MGP_PahariEiJ_G0016708) #22	Igsf5 (MGP_PahariEiJ_G0016709) #23	Itgb2l (MGP_PahariEiJ_G0016710)	MGP_PahariEiJ_G0016711	Dscam (MGP_PahariEiJ_G0016712)	Bace2 (MGP_PahariEiJ_G0016713)	MGP_PahariEiJ_G0016714	Fam3b (MGP_PahariEiJ_G0016715)	MGP_PahariEiJ_G0008412	Tmprss2 (MGP_PahariEiJ_G0016716)	Ripk4 (MGP_PahariEiJ_G0016717)	Prdm15 (MGP_PahariEiJ_G0016718)	C2cd2 (MGP_PahariEiJ_G0016719)	Zbtb21 (MGP_PahariEiJ_G0016720)
Rat	MODERN SPECIES	2	Pigp (ENSRNOG00000039850)	Ttc3 (ENSRNOG00000001682)	Vps26c (ENSRNOG00000001681)	Dyrk1a (ENSRNOG00000001662)	Kcnj6 (ENSRNOG00000001658)	Kcnj15 (ENSRNOG00000062944)	Erg (ENSRNOG00000001652)	Ets2 (ENSRNOG00000001647)	Psmg1 (ENSRNOG00000001643)	Brwd1 (ENSRNOG00000001632)	ENSRNOG00000067977	Hmgn1 (ENSRNOG00000048226)	Get1 (ENSRNOG00000001629)	Lca5l (ENSRNOG00000028248)	Sh3bgr (ENSRNOG00000028238)	B3galt5 (ENSRNOG00000030983) #22	Igsf5 (ENSRNOG00000028216) #23	ENSRNOG00000063024	Pcp4 (ENSRNOG00000001628)	Dscam (ENSRNOG00000027992)	Bace2 (ENSRNOG00000001953)	Mx1 (ENSRNOG00000001959)	Fam3b (ENSRNOG00000001962)	Mx2 (ENSRNOG00000001963)	Tmprss2 (ENSRNOG00000001976)	Ripk4 (ENSRNOG00000001618)	Prdm15 (ENSRNOG00000001620)	C2cd2 (ENSRNOG00000001621)	Zbtb21 (ENSRNOG00000001623)	Nsun3 (ENSRNOG00000070121)	RGD1565472 (ENSRNOG00000046991)
Upper Galilee mountains blind mole rat	MODERN SPECIES	531						Kcnj15 (ENSNGAG00000012200)	Erg (ENSNGAG00000019090)	Ets2 (ENSNGAG00000017753)	Psmg1 (ENSNGAG00000018513)	ENSNGAG00000000424	ENSNGAG00000001381	Hmgn1 (ENSNGAG00000004731)	ENSNGAG00000009726	Lca5l (ENSNGAG00000013269)	ENSNGAG00000001301	B3galt5 (ENSNGAG00000004051) #22	Igsf5 (ENSNGAG00000008533) #23	ENSNGAG00000016455	Dscam (ENSNGAG00000019173)