Muroidea_A	ANCESTRAL SPECIES	17	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662 #14	ENSGT00940000160202 #15	ENSGT00500000044950 #16	ENSGT00950000183107.a.b.a #17	ENSGT00950000182802.A #18	ENSGT00390000008610.a.b.a.a.b #19	ENSGT00560000077266.b #20	ENSGT00940000159847 #21	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d #24	ENSGT00530000064267 #25	ENSGT00940000154678.a.a #26	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Murinae	ANCESTRAL SPECIES	13	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662 #14	ENSGT00940000160202 #15	ENSGT00500000044950 #16	ENSGT00950000183107.a.b.a #17	ENSGT00950000182802.A #18	ENSGT00390000008610.a.b.a.a.b #19	ENSGT00560000077266.b #20	ENSGT00940000159847 #21	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d #24	ENSGT00530000064267 #25	ENSGT00940000154678.a.a #26	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Mus	ANCESTRAL SPECIES	13	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662 #14	ENSGT00940000160202 #15	ENSGT00500000044950 #16	ENSGT00950000183107.a.b.a #17	ENSGT00950000182802.A #18	ENSGT00390000008610.a.b.a.a.b #19	ENSGT00560000077266.b #20	ENSGT00940000159847 #21	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d #24	ENSGT00530000064267 #25	ENSGT00940000154678.a.a #26	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Mus_A	ANCESTRAL SPECIES	18	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662 #14	ENSGT00940000160202 #15	ENSGT00500000044950 #16	ENSGT00950000183107.a.b.a #17	ENSGT00950000182802.A.u.b ##18	ENSGT00390000008610.a.b.a.a.b #19	ENSGT00560000077266.b #20	ENSGT00940000159847 #21	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d #24	ENSGT00530000064267 #25	ENSGT00940000154678.a.a #26	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Mus_B	ANCESTRAL SPECIES	18	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662 #14	ENSGT00940000160202 #15	ENSGT00500000044950 #16	ENSGT00950000183107.a.b.a #17	ENSGT00950000182802.A.u.a #18	ENSGT00390000008610.a.b.a.a.b #19	ENSGT00560000077266.b #20	ENSGT00940000159847 #21	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d #24	ENSGT00530000064267 #25	ENSGT00940000154678.a.a #26	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Mus_C	ANCESTRAL SPECIES	12	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662 #14	ENSGT00940000160202 #15	ENSGT00500000044950 #16	ENSGT00950000183107.a.b.a #17	ENSGT00950000182802.A.u.a #18	ENSGT00390000008610.a.b.a.a.b #19	ENSGT00560000077266.b #20	ENSGT00940000159847 #21	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d #24	ENSGT00530000064267 #25	ENSGT00940000154678.a.a #26	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Steppe mouse	MODERN SPECIES	3075								Erg (ENSMSIG00000015868) #14	Ets2 (ENSMSIG00000015834) #15	Psmg1 (ENSMSIG00000015643) #16	Brwd1 (ENSMSIG00000015168) #17	ENSMSIG00000015102 #18	ENSMSIG00000015019 #19	Lca5l (ENSMSIG00000014966) #20	Sh3bgr (ENSMSIG00000014902) #21	B3galt5 (ENSMSIG00000014879) #22	Igsf5 (ENSMSIG00000014791) #23	Itgb2l (ENSMSIG00000014689) #24	ENSMSIG00000014678 #25	Dscam (ENSMSIG00000014580) #26
spretus	MODERN SPECIES	7	Hlcs (MGP_SPRETEiJ_G0021893)	Ripply3 (MGP_SPRETEiJ_G0021894)	MGP_SPRETEiJ_G0021895	Ttc3 (MGP_SPRETEiJ_G0021896)	Vps26c (MGP_SPRETEiJ_G0021897)	Dyrk1a (MGP_SPRETEiJ_G0021898)	Kcnj6 (MGP_SPRETEiJ_G0021899)	Kcnj15 (MGP_SPRETEiJ_G0021900)	Erg (MGP_SPRETEiJ_G0021901) #14	Ets2 (MGP_SPRETEiJ_G0021902) #15	Psmg1 (MGP_SPRETEiJ_G0021903) #16	Hmgn1 (MGP_SPRETEiJ_G0021905) ##18	MGP_SPRETEiJ_G0021906 #19	Lca5l (MGP_SPRETEiJ_G0021907) #20	MGP_SPRETEiJ_G0021908 #21	B3galt5 (MGP_SPRETEiJ_G0021909) #22	Igsf5 (MGP_SPRETEiJ_G0021910) #23	Itgb2l (MGP_SPRETEiJ_G0021911) #24	MGP_SPRETEiJ_G0021912 #25	Dscam (MGP_SPRETEiJ_G0021913) #26	Bace2 (MGP_SPRETEiJ_G0021914)	MGP_SPRETEiJ_G0021915	Fam3b (MGP_SPRETEiJ_G0021916)	Tmprss2 (MGP_SPRETEiJ_G0021917)	Ripk4 (MGP_SPRETEiJ_G0021918)	Prdm15 (MGP_SPRETEiJ_G0021919)	C2cd2 (MGP_SPRETEiJ_G0021920)	Zbtb21 (MGP_SPRETEiJ_G0021921)
Mouse	MODERN SPECIES	7	Ripply3 (ENSMUSG00000022941)	Pigp (ENSMUSG00000022940)	Ttc3 (ENSMUSG00000040785)	Vps26c (ENSMUSG00000022898)	Dyrk1a (ENSMUSG00000022897)	Kcnj6 (ENSMUSG00000043301)	Kcnj15 (ENSMUSG00000062609)	Erg (ENSMUSG00000040732) #14	Ets2 (ENSMUSG00000022895) #15	Psmg1 (ENSMUSG00000022913) #16	Brwd1 (ENSMUSG00000022914) #17	Hmgn1 (ENSMUSG00000040681) ##18	Get1 (ENSMUSG00000023147)	Lca5l (ENSMUSG00000045275) #20	Sh3bgr (ENSMUSG00000040666) #21	B3galt5 (ENSMUSG00000074892) #22	Igsf5 (ENSMUSG00000000159) #23	Gm49948 (ENSMUSG00000117081)	Itgb2l (ENSMUSG00000000157) #24	Pcp4 (ENSMUSG00000090223)	Dscam (ENSMUSG00000050272) #26	Bace2 (ENSMUSG00000040605)	Mx1 (ENSMUSG00000000386)	Fam3b (ENSMUSG00000022938)	Mx2 (ENSMUSG00000023341)	Tmprss2 (ENSMUSG00000000385)	Ripk4 (ENSMUSG00000005251)	Prdm15 (ENSMUSG00000014039)	C2cd2 (ENSMUSG00000045975)	Zbtb21 (ENSMUSG00000046962)	B230307C23Rik (ENSMUSG00000080717)
Ryukyu mouse	MODERN SPECIES	7	Ripply3 (MGP_CAROLIEiJ_G0020988)	MGP_CAROLIEiJ_G0020989	Ttc3 (MGP_CAROLIEiJ_G0020990)	Vps26c (MGP_CAROLIEiJ_G0020991)	Dyrk1a (MGP_CAROLIEiJ_G0020992)	Kcnj6 (MGP_CAROLIEiJ_G0020993)	Kcnj15 (MGP_CAROLIEiJ_G0020994)	Erg (MGP_CAROLIEiJ_G0020995) #14	Ets2 (MGP_CAROLIEiJ_G0020996) #15	Psmg1 (MGP_CAROLIEiJ_G0020997) #16	Brwd1 (MGP_CAROLIEiJ_G0020998) #17	MGP_CAROLIEiJ_G0020999 ##18	MGP_CAROLIEiJ_G0021000 #19	Lca5l (MGP_CAROLIEiJ_G0021001) #20	MGP_CAROLIEiJ_G0021002 #21	B3galt5 (MGP_CAROLIEiJ_G0021003) #22	Igsf5 (MGP_CAROLIEiJ_G0021004) #23	Itgb2l (MGP_CAROLIEiJ_G0021005) #24	MGP_CAROLIEiJ_G0021006 #25	Dscam (MGP_CAROLIEiJ_G0021007) #26	Bace2 (MGP_CAROLIEiJ_G0021008)	MGP_CAROLIEiJ_G0021009	Fam3b (MGP_CAROLIEiJ_G0021010)	MGP_CAROLIEiJ_G0008949	Ripk4 (MGP_CAROLIEiJ_G0021011)	Prdm15 (MGP_CAROLIEiJ_G0021012)	C2cd2 (MGP_CAROLIEiJ_G0021013)	Zbtb21 (MGP_CAROLIEiJ_G0021014)
Shrew mouse	MODERN SPECIES	3	Ripply3 (MGP_PahariEiJ_G0016693)	MGP_PahariEiJ_G0016694	MGP_PahariEiJ_G0016695	Vps26c (MGP_PahariEiJ_G0016696)	Dyrk1a (MGP_PahariEiJ_G0016697)	Kcnj6 (MGP_PahariEiJ_G0016698)	Kcnj15 (MGP_PahariEiJ_G0016699)	Erg (MGP_PahariEiJ_G0016700) #14	Ets2 (MGP_PahariEiJ_G0016701) #15	Psmg1 (MGP_PahariEiJ_G0016702) #16	MGP_PahariEiJ_G0016703 #17	MGP_PahariEiJ_G0016704	MGP_PahariEiJ_G0016705 #19	Lca5l (MGP_PahariEiJ_G0016706) #20	MGP_PahariEiJ_G0016707 #21	B3galt5 (MGP_PahariEiJ_G0016708) #22	Igsf5 (MGP_PahariEiJ_G0016709) #23	Itgb2l (MGP_PahariEiJ_G0016710) #24	MGP_PahariEiJ_G0016711 #25	Dscam (MGP_PahariEiJ_G0016712) #26	Bace2 (MGP_PahariEiJ_G0016713)	MGP_PahariEiJ_G0016714	Fam3b (MGP_PahariEiJ_G0016715)	MGP_PahariEiJ_G0008412	Tmprss2 (MGP_PahariEiJ_G0016716)	Ripk4 (MGP_PahariEiJ_G0016717)	Prdm15 (MGP_PahariEiJ_G0016718)	C2cd2 (MGP_PahariEiJ_G0016719)	Zbtb21 (MGP_PahariEiJ_G0016720)
Rat	MODERN SPECIES	2	Pigp (ENSRNOG00000039850)	Ttc3 (ENSRNOG00000001682)	Vps26c (ENSRNOG00000001681)	Dyrk1a (ENSRNOG00000001662)	Kcnj6 (ENSRNOG00000001658)	Kcnj15 (ENSRNOG00000062944)	Erg (ENSRNOG00000001652) #14	Ets2 (ENSRNOG00000001647) #15	Psmg1 (ENSRNOG00000001643) #16	Brwd1 (ENSRNOG00000001632) #17	ENSRNOG00000067977	Hmgn1 (ENSRNOG00000048226) #18	Get1 (ENSRNOG00000001629)	Lca5l (ENSRNOG00000028248) #20	Sh3bgr (ENSRNOG00000028238) #21	B3galt5 (ENSRNOG00000030983) #22	Igsf5 (ENSRNOG00000028216) #23	ENSRNOG00000063024	Pcp4 (ENSRNOG00000001628) #25	Dscam (ENSRNOG00000027992) #26	Bace2 (ENSRNOG00000001953)	Mx1 (ENSRNOG00000001959)	Fam3b (ENSRNOG00000001962)	Mx2 (ENSRNOG00000001963)	Tmprss2 (ENSRNOG00000001976)	Ripk4 (ENSRNOG00000001618)	Prdm15 (ENSRNOG00000001620)	C2cd2 (ENSRNOG00000001621)	Zbtb21 (ENSRNOG00000001623)	Nsun3 (ENSRNOG00000070121)	RGD1565472 (ENSRNOG00000046991)
Cricetidae	ANCESTRAL SPECIES	16	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662 #14	ENSGT00940000160202 #15	ENSGT00500000044950 #16	ENSGT00950000183107.a.b.a #17	ENSGT00950000182802.A #18	ENSGT00390000008610.a.b.a.a.b #19	ENSGT00560000077266.b #20	ENSGT00940000159847 #21	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d #24	ENSGT00530000064267 #25	ENSGT00940000154678.a.a #26	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Cricetinae	ANCESTRAL SPECIES	10	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662 #14	ENSGT00940000160202 #15	ENSGT00500000044950 #16	ENSGT00950000183107.a.b.a #17	ENSGT00950000182802.A #18	ENSGT00390000008610.a.b.a.a.b #19	ENSGT00560000077266.b #20	ENSGT00940000159847 #21	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT00530000064267 #25	ENSGT00940000154678.a.a #26	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028	ENSGT00940000153805.q.b.a.a.a.a.a.a.a.a.c.a.a
Chinese hamster chok1gshd	MODERN SPECIES	382	ENSCGRG00001016611	Ttc3 (ENSCGRG00001022857)	Vps26c (ENSCGRG00001014527)	Dyrk1a (ENSCGRG00001000504)	Kcnj6 (ENSCGRG00001008563)	Kcnj15 (ENSCGRG00001014785)	Erg (ENSCGRG00001005751) #14	Ets2 (ENSCGRG00001019241) #15	Psmg1 (ENSCGRG00001023463) #16	Brwd1 (ENSCGRG00001019901) #17	Hmgn1 (ENSCGRG00001006425) #18	ENSCGRG00001015026 #19	ENSCGRG00001008454	Lca5l (ENSCGRG00001001508) #20	ENSCGRG00001018634 #21	B3galt5 (ENSCGRG00001003465) #22	Igsf5 (ENSCGRG00001017358) #23	ENSCGRG00001011223 #25	Dscam (ENSCGRG00001020907) #26	Bace2 (ENSCGRG00001006826)	Mx1 (ENSCGRG00001009938)	Fam3b (ENSCGRG00001021679)	Mx2 (ENSCGRG00001004304)	Tmprss2 (ENSCGRG00001008718)	ENSCGRG00001011892	Ripk4 (ENSCGRG00001021625)	Prdm15 (ENSCGRG00001012883)	C2cd2 (ENSCGRG00001018582)	Zbtb21 (ENSCGRG00001012061)	ENSCGRG00001016488
Cricetidae_B	ANCESTRAL SPECIES	13	ENSGT00730000111429	ENSGT00390000013771	ENSGT00940000154465.C	ENSGT00950000183064.b	ENSGT00940000157408	ENSGT01080000257365.b.a.b.a.a	ENSGT00990000203615.b.a.a.a.b	ENSGT00940000160662 #14	ENSGT00940000160202 #15	ENSGT00500000044950 #16	ENSGT00950000183107.a.b.a #17	ENSGT00950000182802.A #18	ENSGT00390000008610.a.b.a.a.b #19	ENSGT00560000077266.b #20	ENSGT00940000159847 #21	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d #24	ENSGT00530000064267 #25	ENSGT00940000154678.a.a #26	ENSGT00940000159548	ENSGT00940000155686.j	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.i	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00940000161028
Northern American deer mouse	MODERN SPECIES	3	Pigp (ENSPEMG00000014214)	Ttc3 (ENSPEMG00000024827)	Vps26c (ENSPEMG00000016213)	Dyrk1a (ENSPEMG00000017620)	Kcnj6 (ENSPEMG00000000223)	Kcnj15 (ENSPEMG00000001507)	Erg (ENSPEMG00000008582) #14	Ets2 (ENSPEMG00000012273) #15	ENSPEMG00000031015	Psmg1 (ENSPEMG00000010416) #16	Brwd1 (ENSPEMG00000014898) #17	ENSPEMG00000020156 #18	ENSPEMG00000027492 #19	Lca5l (ENSPEMG00000020214) #20	ENSPEMG00000003252 #21	B3galt5 (ENSPEMG00000006922) #22	Igsf5 (ENSPEMG00000007617) #23	Itgb2l (ENSPEMG00000009654) #24	ENSPEMG00000029164 #25	Dscam (ENSPEMG00000013979) #26	Bace2 (ENSPEMG00000015582)	ENSPEMG00000015989	Fam3b (ENSPEMG00000017357)	ENSPEMG00000014739	ENSPEMG00000027181	ENSPEMG00000024660	ENSPEMG00000027256	Tmprss2 (ENSPEMG00000007177)	Ripk4 (ENSPEMG00000016616)	Prdm15 (ENSPEMG00000011962)	C2cd2 (ENSPEMG00000014730)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	265																ENSMOCG00000013011 #22
Prairie vole	MODERN SPECIES	7	Ttc3 (ENSMOCG00000016472)	Vps26c (ENSMOCG00000001783)	Dyrk1a (ENSMOCG00000021125)	Kcnj6 (ENSMOCG00000021427)	Kcnj15 (ENSMOCG00000022139)	Erg (ENSMOCG00000016605) #14	Ets2 (ENSMOCG00000011500) #15	Psmg1 (ENSMOCG00000019906) #16	ENSMOCG00000017915 #17	ENSMOCG00000005141 #17	ENSMOCG00000016951	ENSMOCG00000018055 #18	ENSMOCG00000016062 #19	Lca5l (ENSMOCG00000008785) #20	ENSMOCG00000000644 #21	ENSMOCG00000012887 #22	Or4c117 (ENSMOCG00000022094)	ENSMOCG00000007303	Or4a2 (ENSMOCG00000009982)	Or4a68 (ENSMOCG00000003063)	Or4a72 (ENSMOCG00000003943)	Parp9 (ENSMOCG00000015450)	Kpna1 (ENSMOCG00000006140)	Golgb1 (ENSMOCG00000009516)	Iqcb1 (ENSMOCG00000018317)	Eaf2 (ENSMOCG00000015355)	ENSMOCG00000010965	Ildr1 (ENSMOCG00000020672)	Cd86 (ENSMOCG00000018575)	Casr (ENSMOCG00000010550)	ENSMOCG00000004379