Mus_A	ANCESTRAL SPECIES	18	ENSGT00730000111429 #7	ENSGT00390000013771 #8	ENSGT00940000154465.C #9	ENSGT00950000183064.b #10	ENSGT00940000157408 #11	ENSGT01080000257365.b.a.b.a.a #12	ENSGT00990000203615.b.a.a.a.b #13	ENSGT00940000160662 #14	ENSGT00940000160202 #15	ENSGT00500000044950 #16	ENSGT00950000183107.a.b.a #17	ENSGT00950000182802.A.u.b ##18	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b #20	ENSGT00940000159847 #21	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d #25	ENSGT00530000064267	ENSGT00940000154678.a.a #27	ENSGT00940000159548 #28	ENSGT00940000155686.j #29	ENSGT00950000183004.a.b.a.b #30	ENSGT00940000155686.i #31	ENSGT00940000155207.a.b #32	ENSGT00940000159908 #33	ENSGT00940000157890 #34	ENSGT00530000063764.a #35	ENSGT00940000161028 #36
Mus_B	ANCESTRAL SPECIES	18	ENSGT00730000111429 #7	ENSGT00390000013771 #8	ENSGT00940000154465.C #9	ENSGT00950000183064.b #10	ENSGT00940000157408 #11	ENSGT01080000257365.b.a.b.a.a #12	ENSGT00990000203615.b.a.a.a.b #13	ENSGT00940000160662 #14	ENSGT00940000160202 #15	ENSGT00500000044950 #16	ENSGT00950000183107.a.b.a #17	ENSGT00950000182802.A.u.a ##18	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b #20	ENSGT00940000159847 #21	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d #25	ENSGT00530000064267	ENSGT00940000154678.a.a #27	ENSGT00940000159548 #28	ENSGT00940000155686.j #29	ENSGT00950000183004.a.b.a.b #30	ENSGT00940000155686.i #31	ENSGT00940000155207.a.b #32	ENSGT00940000159908 #33	ENSGT00940000157890 #34	ENSGT00530000063764.a #35	ENSGT00940000161028 #36
Mouse	MODERN SPECIES	7	Ripply3 (ENSMUSG00000022941) #7	Pigp (ENSMUSG00000022940) #8	Ttc3 (ENSMUSG00000040785) #9	Vps26c (ENSMUSG00000022898) #10	Dyrk1a (ENSMUSG00000022897) #11	Kcnj6 (ENSMUSG00000043301) #12	Kcnj15 (ENSMUSG00000062609) #13	Erg (ENSMUSG00000040732) #14	Ets2 (ENSMUSG00000022895) #15	Psmg1 (ENSMUSG00000022913) #16	Brwd1 (ENSMUSG00000022914) #17	Hmgn1 (ENSMUSG00000040681) #18	Get1 (ENSMUSG00000023147) #19	Lca5l (ENSMUSG00000045275) #20	Sh3bgr (ENSMUSG00000040666) #21	B3galt5 (ENSMUSG00000074892) #22	Igsf5 (ENSMUSG00000000159) #23	Gm49948 (ENSMUSG00000117081) #24	Itgb2l (ENSMUSG00000000157) #25	Pcp4 (ENSMUSG00000090223) #26	Dscam (ENSMUSG00000050272) #27	Bace2 (ENSMUSG00000040605) #28	Mx1 (ENSMUSG00000000386) #29	Fam3b (ENSMUSG00000022938) #30	Mx2 (ENSMUSG00000023341) #31	Tmprss2 (ENSMUSG00000000385) #32	Ripk4 (ENSMUSG00000005251) #33	Prdm15 (ENSMUSG00000014039) #34	C2cd2 (ENSMUSG00000045975) #35	Zbtb21 (ENSMUSG00000046962) #36	B230307C23Rik (ENSMUSG00000080717) #37
Mus_C	ANCESTRAL SPECIES	12	ENSGT00730000111429 #7	ENSGT00390000013771 #8	ENSGT00940000154465.C #9	ENSGT00950000183064.b #10	ENSGT00940000157408 #11	ENSGT01080000257365.b.a.b.a.a #12	ENSGT00990000203615.b.a.a.a.b #13	ENSGT00940000160662 #14	ENSGT00940000160202 #15	ENSGT00500000044950 #16	ENSGT00950000183107.a.b.a #17	ENSGT00950000182802.A.u.a ##18	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b #20	ENSGT00940000159847 #21	ENSGT00940000160964 #22	ENSGT00940000163238 #23	ENSGT01090000259987.a.a.a.d #25	ENSGT00530000064267	ENSGT00940000154678.a.a #27	ENSGT00940000159548 #28	ENSGT00940000155686.j #29	ENSGT00950000183004.a.b.a.b #30	ENSGT00940000155686.i #31	ENSGT00940000155207.a.b #32	ENSGT00940000159908 #33	ENSGT00940000157890 #34	ENSGT00530000063764.a #35	ENSGT00940000161028 #36
Steppe mouse	MODERN SPECIES	3075								Erg (ENSMSIG00000015868) #14	Ets2 (ENSMSIG00000015834) #15	Psmg1 (ENSMSIG00000015643) #16	Brwd1 (ENSMSIG00000015168) #17	ENSMSIG00000015102 ##18	ENSMSIG00000015019	Lca5l (ENSMSIG00000014966) #20	Sh3bgr (ENSMSIG00000014902) #21	B3galt5 (ENSMSIG00000014879) #22	Igsf5 (ENSMSIG00000014791) #23	Itgb2l (ENSMSIG00000014689) #25	ENSMSIG00000014678	Dscam (ENSMSIG00000014580) #27
spretus	MODERN SPECIES	7	Hlcs (MGP_SPRETEiJ_G0021893)	Ripply3 (MGP_SPRETEiJ_G0021894) #7	MGP_SPRETEiJ_G0021895 #8	Ttc3 (MGP_SPRETEiJ_G0021896) #9	Vps26c (MGP_SPRETEiJ_G0021897) #10	Dyrk1a (MGP_SPRETEiJ_G0021898) #11	Kcnj6 (MGP_SPRETEiJ_G0021899) #12	Kcnj15 (MGP_SPRETEiJ_G0021900) #13	Erg (MGP_SPRETEiJ_G0021901) #14	Ets2 (MGP_SPRETEiJ_G0021902) #15	Psmg1 (MGP_SPRETEiJ_G0021903) #16	Hmgn1 (MGP_SPRETEiJ_G0021905) #18	MGP_SPRETEiJ_G0021906	Lca5l (MGP_SPRETEiJ_G0021907) #20	MGP_SPRETEiJ_G0021908 #21	B3galt5 (MGP_SPRETEiJ_G0021909) #22	Igsf5 (MGP_SPRETEiJ_G0021910) #23	Itgb2l (MGP_SPRETEiJ_G0021911) #25	MGP_SPRETEiJ_G0021912	Dscam (MGP_SPRETEiJ_G0021913) #27	Bace2 (MGP_SPRETEiJ_G0021914) #28	MGP_SPRETEiJ_G0021915 #29	Fam3b (MGP_SPRETEiJ_G0021916) #30	Tmprss2 (MGP_SPRETEiJ_G0021917) #32	Ripk4 (MGP_SPRETEiJ_G0021918) #33	Prdm15 (MGP_SPRETEiJ_G0021919) #34	C2cd2 (MGP_SPRETEiJ_G0021920) #35	Zbtb21 (MGP_SPRETEiJ_G0021921) #36
Ryukyu mouse	MODERN SPECIES	7	Ripply3 (MGP_CAROLIEiJ_G0020988) #7	MGP_CAROLIEiJ_G0020989 #8	Ttc3 (MGP_CAROLIEiJ_G0020990) #9	Vps26c (MGP_CAROLIEiJ_G0020991) #10	Dyrk1a (MGP_CAROLIEiJ_G0020992) #11	Kcnj6 (MGP_CAROLIEiJ_G0020993) #12	Kcnj15 (MGP_CAROLIEiJ_G0020994) #13	Erg (MGP_CAROLIEiJ_G0020995) #14	Ets2 (MGP_CAROLIEiJ_G0020996) #15	Psmg1 (MGP_CAROLIEiJ_G0020997) #16	Brwd1 (MGP_CAROLIEiJ_G0020998) #17	MGP_CAROLIEiJ_G0020999 ##18	MGP_CAROLIEiJ_G0021000	Lca5l (MGP_CAROLIEiJ_G0021001) #20	MGP_CAROLIEiJ_G0021002 #21	B3galt5 (MGP_CAROLIEiJ_G0021003) #22	Igsf5 (MGP_CAROLIEiJ_G0021004) #23	Itgb2l (MGP_CAROLIEiJ_G0021005) #25	MGP_CAROLIEiJ_G0021006	Dscam (MGP_CAROLIEiJ_G0021007) #27	Bace2 (MGP_CAROLIEiJ_G0021008) #28	MGP_CAROLIEiJ_G0021009 #29	Fam3b (MGP_CAROLIEiJ_G0021010) #30	MGP_CAROLIEiJ_G0008949 #31	Ripk4 (MGP_CAROLIEiJ_G0021011) #33	Prdm15 (MGP_CAROLIEiJ_G0021012) #34	C2cd2 (MGP_CAROLIEiJ_G0021013) #35	Zbtb21 (MGP_CAROLIEiJ_G0021014) #36