Sciuridae	ANCESTRAL SPECIES	33	ENSGT00940000156641 #8	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00640000091672	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00940000161175 #26	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00390000018500.a #28	ENSGT00570000079564	ENSGT00940000162246	ENSGT01090000260018.C.a ##29	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT01090000260045.C.e.a.b	ENSGT00730000111648	ENSGT00390000010671 #30	ENSGT01090000259995.a.a.a #31	ENSGT01090000260018.A.a.a.b.a #34
Marmotini	ANCESTRAL SPECIES	38	ENSGT00940000156641 #8	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00640000091672	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00940000161175 #26	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00390000018500.a #28	ENSGT01090000259995.b.b.b ##31	ENSGT00940000162246	ENSGT01090000260045.C.e.a.b	ENSGT00730000111648	ENSGT00390000010671 #30	ENSGT01090000259995.a.a.a #31	ENSGT01090000259995.a.a.b.a.b.b #33	ENSGT01090000260018.A.a.a.b.a #34	ENSGT01100000263570.A.r.c.b ##35
Marmotini_b	ANCESTRAL SPECIES	127	ENSGT00940000156641 #8	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00640000091672	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00940000161175 #26	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00390000018500.a #28	ENSGT00390000010671 #30	ENSGT01090000259995.a.a.a #31
Squirrel	MODERN SPECIES	209	EFCAB9 (ENSSTOG00000020218) #7	UBTD2 (ENSSTOG00000014298) #8	SH3PXD2B (ENSSTOG00000028124) #9	NEURL1B (ENSSTOG00000025420) #10	DUSP1 (ENSSTOG00000023698) #11	ERGIC1 (ENSSTOG00000025246) #12	RPL26L1 (ENSSTOG00000026876) #13	ATP6V0E1 (ENSSTOG00000025255) #14	CREBRF (ENSSTOG00000004368) #15	BNIP1 (ENSSTOG00000004393) #16	NKX2-5 (ENSSTOG00000004407) #17	STC2 (ENSSTOG00000004413) #18	ENSSTOG00000030887 #19	CPEB4 (ENSSTOG00000020645) #20	NSG2 (ENSSTOG00000011148) #21	MSX2 (ENSSTOG00000000399) #22	DRD1 (ENSSTOG00000029229) #23	SFXN1 (ENSSTOG00000028251) #24	HRH2 (ENSSTOG00000007422) #25	ZNF692 (ENSSTOG00000023210) #26	ENSSTOG00000027630 #27	SH3BP5L (ENSSTOG00000022558) #28	ENSSTOG00000026307 #29	ENSSTOG00000034328 #30	ENSSTOG00000027395 #31	ENSSTOG00000025133 #32	ENSSTOG00000023132 #33	ENSSTOG00000026543 #34	ENSSTOG00000027260 #35	ENSSTOG00000028591 #36	ENSSTOG00000024525 #37
Arctic ground squirrel	MODERN SPECIES	783																MSX2 (ENSUPAG00010005415) #22	ENSUPAG00010005411	ENSUPAG00010005401
Alpin marmot	MODERN SPECIES	31	STK10 (ENSMMMG00000010286)	ENSMMMG00000010272 #7	UBTD2 (ENSMMMG00000010264) #8	SH3PXD2B (ENSMMMG00000010235) #9	NEURL1B (ENSMMMG00000010222) #10	ENSMMMG00000010217 #11	ERGIC1 (ENSMMMG00000010202) #12	RPL26L1 (ENSMMMG00000010196) #13	CREBRF (ENSMMMG00000010165) #15	BNIP1 (ENSMMMG00000010131) #16	NKX2-5 (ENSMMMG00000010122) #17	STC2 (ENSMMMG00000010105) #18	ENSMMMG00000010091 #19	CPEB4 (ENSMMMG00000010044) #20	NSG2 (ENSMMMG00000009989) #21	MSX2 (ENSMMMG00000009968) #22	DRD1 (ENSMMMG00000009915) #23	SFXN1 (ENSMMMG00000009889) #24	HRH2 (ENSMMMG00000009886) #25	ZNF692 (ENSMMMG00000009869) #26	ENSMMMG00000009866 #27	SH3BP5L (ENSMMMG00000009857) #28	OR2AJ1 (ENSMMMG00000009826) ##31	ENSMMMG00000009785	ENSMMMG00000009765 ##29	ENSMMMG00000009757	ENSMMMG00000009753	ENSMMMG00000009740	ENSMMMG00000009704 ##29	ENSMMMG00000009679	ENSMMMG00000009674
Eurasian red squirrel	MODERN SPECIES	15	UBTD2 (ENSSVLG00005013934) #8	SH3PXD2B (ENSSVLG00005013894) #9	NEURL1B (ENSSVLG00005013785) #10	DUSP1 (ENSSVLG00005013587) #11	ERGIC1 (ENSSVLG00005013430) #12	RPL26L1 (ENSSVLG00005013228) #13	ATP6V0E1 (ENSSVLG00005013162) #14	CREBRF (ENSSVLG00005013005) #15	BNIP1 (ENSSVLG00005012932) #16	NKX2-5 (ENSSVLG00005012867) #17	STC2 (ENSSVLG00005012797) #18	ENSSVLG00005012611 #19	CPEB4 (ENSSVLG00005012332) #20	C5orf47 (ENSSVLG00005012218)	NSG2 (ENSSVLG00005012146) #21	MSX2 (ENSSVLG00005012101) #22	DRD1 (ENSSVLG00005012085) #23	ENSSVLG00005011926 #24	HRH2 (ENSSVLG00005011848) #25	ZNF692 (ENSSVLG00005011774) #26	ZNF672 (ENSSVLG00005011715)	SH3BP5L (ENSSVLG00005011666) #28	LYPD8 (ENSSVLG00005011575)	ENSSVLG00005011500 #30	ENSSVLG00005011447 #31	ENSSVLG00005011420 #34	ENSSVLG00005011399 #35	ENSSVLG00005011330	ENSSVLG00005011257 #35	ENSSVLG00005011237 #35	ENSSVLG00005011194