Murinae	ANCESTRAL SPECIES	21	ENSGT00940000162796 #7	ENSGT00940000161160 #8	ENSGT00940000158553.b.b #9	ENSGT00940000157197 #10	ENSGT00940000160186 #11	ENSGT00910000144291 #12	ENSGT00390000003426 #13	ENSGT00940000160017 #14	ENSGT00390000000537 #15	ENSGT00940000153451.a.a.b #16	ENSGT00940000158129 #17	ENSGT00950000182938.a #18	ENSGT00940000158761 #19	ENSGT01030000234641.b.a.b.a.b #20	ENSGT00940000155857 #21	ENSGT00940000159824 #22	ENSGT00550000074872 #23	ENSGT00940000153947.A #24	ENSGT00940000160540 #25	ENSGT00940000157484 #26	ENSGT00940000159053 #27	ENSGT00940000158196 #28	ENSGT00950000182964.a.b.a #29	ENSGT00940000159594 #30	ENSGT00390000013795	ENSGT00490000043356.b #31	ENSGT00950000182971.C #32	ENSGT00950000182870.a.a.a.b #33	ENSGT01050000244887.A.b.b #34	ENSGT00940000161260 #35	ENSGT00950000182925.D.a.a.b.a #36
Mus	ANCESTRAL SPECIES	18	ENSGT00940000162796 #7	ENSGT00940000161160 #8	ENSGT00940000158553.b.b #9	ENSGT00940000157197 #10	ENSGT00940000160186 #11	ENSGT00910000144291 #12	ENSGT00390000003426 #13	ENSGT00940000160017 #14	ENSGT00390000000537 #15	ENSGT00940000153451.a.a.b #16	ENSGT00940000158129 #17	ENSGT00950000182938.a #18	ENSGT00940000158761 #19	ENSGT01030000234641.b.a.b.a.b #20	ENSGT00940000155857 #21	ENSGT00940000159824 #22	ENSGT00550000074872 #23	ENSGT00940000153947.A #24	ENSGT00940000160540 #25	ENSGT00940000157484 #26	ENSGT00940000159053 #27	ENSGT00940000158196 #28	ENSGT00950000182964.a.b.a #29	ENSGT00940000159594 #30	ENSGT00390000013795	ENSGT00490000043356.b #31	ENSGT00950000182971.C #32	ENSGT00950000182870.a.a.a.b #33	ENSGT01050000244887.A.b.b #34	ENSGT00940000161260 #35	ENSGT00950000182925.D.a.a.b.a #36
Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000162796 #7	ENSGT00940000161160 #8	ENSGT00940000158553.b.b #9	ENSGT00940000157197 #10	ENSGT00940000160186 #11	ENSGT00910000144291 #12	ENSGT00390000003426 #13	ENSGT00940000160017 #14	ENSGT00390000000537 #15	ENSGT00940000153451.a.a.b #16	ENSGT00940000158129 #17	ENSGT00950000182938.a #18	ENSGT00940000158761 #19	ENSGT01030000234641.b.a.b.a.b #20	ENSGT00940000155857 #21	ENSGT00940000159824 #22	ENSGT00550000074872 #23	ENSGT00940000153947.A #24	ENSGT00940000160540 #25	ENSGT00940000157484 #26	ENSGT00940000159053 #27	ENSGT00940000158196 #28	ENSGT00950000182964.a.b.a #29	ENSGT00940000159594 #30	ENSGT00390000013795	ENSGT00490000043356.b #31	ENSGT00950000182971.C #32	ENSGT00950000182870.a.a.a.b #33	ENSGT01050000244887.A.b.b #34	ENSGT00940000161260 #35	ENSGT00950000182925.D.a.a.b.a #36
Mus_B	ANCESTRAL SPECIES	13	ENSGT00940000162796 #7	ENSGT00940000161160 #8	ENSGT00940000158553.b.b #9	ENSGT00940000157197 #10	ENSGT00940000160186 #11	ENSGT00910000144291 #12	ENSGT00390000003426 #13	ENSGT00940000160017 #14	ENSGT00390000000537 #15	ENSGT00940000153451.a.a.b #16	ENSGT00940000158129 #17	ENSGT00950000182938.a #18	ENSGT00940000158761 #19	ENSGT01030000234641.b.a.b.a.b #20	ENSGT00940000155857 #21	ENSGT00940000159824 #22	ENSGT00550000074872 #23	ENSGT00940000153947.A #24	ENSGT00940000160540 #25	ENSGT00940000157484 #26	ENSGT00940000159053 #27	ENSGT00940000158196 #28	ENSGT00950000182964.a.b.a #29	ENSGT00940000159594 #30	ENSGT00390000013795	ENSGT00490000043356.b #31	ENSGT00950000182971.C #32	ENSGT00950000182870.a.a.a.b #33	ENSGT01050000244887.A.b.b #34	ENSGT00940000161260 #35	ENSGT00950000182925.D.a.a.b.a.c #36
Mouse	MODERN SPECIES	4	Gprin1 (ENSMUSG00000069227) #7	Cdhr2 (ENSMUSG00000034918) #8	Rnf44 (ENSMUSG00000034928) #9	Faf2 (ENSMUSG00000025873) #10	Cltb (ENSMUSG00000047547) #11	Higd2a (ENSMUSG00000025868) #12	Nop16 (ENSMUSG00000025869) #13	Arl10 (ENSMUSG00000025870) #14	4833439L19Rik (ENSMUSG00000025871) #15	Simc1 (ENSMUSG00000043183) #16	Thoc3 (ENSMUSG00000025872) #17	Cplx2 (ENSMUSG00000025867) #18	Hrh2 (ENSMUSG00000034987) #19	Sfxn1 (ENSMUSG00000021474) #20	Drd1 (ENSMUSG00000021478) #21	Msx2 (ENSMUSG00000021469) #22	Sptlc1 (ENSMUSG00000021468) #23	Ror2 (ENSMUSG00000021464) #24	Nfil3 (ENSMUSG00000056749) #25	Auh (ENSMUSG00000021460) #26	Syk (ENSMUSG00000021457) #27	Diras2 (ENSMUSG00000047842) #28	Gadd45g (ENSMUSG00000021453) #29	Sema4d (ENSMUSG00000021451) #30	Secisbp2 (ENSMUSG00000035139) #31	Cks2 (ENSMUSG00000062248) #32	Shc3 (ENSMUSG00000021448) #33	S1pr3 (ENSMUSG00000067586) #34	Nxnl2 (ENSMUSG00000021396) #35	Spin1 (ENSMUSG00000021395) #36	Gm8765 (ENSMUSG00000094918) #37
Mus_C	ANCESTRAL SPECIES	10	ENSGT00940000162796 #7	ENSGT00940000161160 #8	ENSGT00940000158553.b.b #9	ENSGT00940000157197 #10	ENSGT00940000160186 #11	ENSGT00910000144291 #12	ENSGT00390000003426 #13	ENSGT00940000160017 #14	ENSGT00390000000537.o #15	ENSGT00940000153451.a.a.b #16	ENSGT00940000158129 #17	ENSGT00950000182938.a #18	ENSGT00940000158761 #19	ENSGT01030000234641.b.a.b.a.b #20	ENSGT00940000155857 #21	ENSGT00940000159824 #22	ENSGT00550000074872 #23	ENSGT00940000153947.A #24	ENSGT00940000160540 #25	ENSGT00940000157484 #26	ENSGT00940000159053 #27	ENSGT00940000158196 #28	ENSGT00950000182964.a.b.a #29	ENSGT00940000159594 #30	ENSGT00390000013795	ENSGT00490000043356.b #31	ENSGT00950000182971.C #32	ENSGT00950000182870.a.a.a.b #33	ENSGT01050000244887.A.b.b #34	ENSGT00940000161260 #35	ENSGT00950000182925.D.a.a.b.a.c #36
spretus	MODERN SPECIES	4	Cdhr2 (MGP_SPRETEiJ_G0019423) #8	Rnf44 (MGP_SPRETEiJ_G0019422) #9	Faf2 (MGP_SPRETEiJ_G0019421) #10	Cltb (MGP_SPRETEiJ_G0019420) #11	Higd2a (MGP_SPRETEiJ_G0019419) #12	Nop16 (MGP_SPRETEiJ_G0019418) #13	Arl10 (MGP_SPRETEiJ_G0019417) #14	4833439L19Rik (MGP_SPRETEiJ_G0019416) #15	Simc1 (MGP_SPRETEiJ_G0019415) #16	Thoc3 (MGP_SPRETEiJ_G0019414) #17	Cplx2 (MGP_SPRETEiJ_G0019413) #18	Hrh2 (MGP_SPRETEiJ_G0019412) #19	Sfxn1 (MGP_SPRETEiJ_G0019411) #20	Drd1 (MGP_SPRETEiJ_G0019410) #21	MGP_SPRETEiJ_G0019409	Msx2 (MGP_SPRETEiJ_G0019408) #22	Sptlc1 (MGP_SPRETEiJ_G0019407) #23	Ror2 (MGP_SPRETEiJ_G0019406) #24	Nfil3 (MGP_SPRETEiJ_G0019405) #25	Auh (MGP_SPRETEiJ_G0019404) #26	Syk (MGP_SPRETEiJ_G0019403) #27	Gadd45g (MGP_SPRETEiJ_G0019402) #29	Sema4d (MGP_SPRETEiJ_G0019401) #30	MGP_SPRETEiJ_G0019400	Secisbp2 (MGP_SPRETEiJ_G0019399) #31	Cks2 (MGP_SPRETEiJ_G0019398) #32	MGP_SPRETEiJ_G0019397 #33	S1pr3 (MGP_SPRETEiJ_G0019396) #34	Nxnl2 (MGP_SPRETEiJ_G0019395) #35	Spin1 (MGP_SPRETEiJ_G0019394) #36	Nutm2 (MGP_SPRETEiJ_G0019393)
Steppe mouse	MODERN SPECIES	3336	Cdhr2 (ENSMSIG00000008108) #8	Rnf44 (ENSMSIG00000008024) #9	Faf2 (ENSMSIG00000007971) #10	Cltb (ENSMSIG00000007939) #11	Higd2a (ENSMSIG00000007929) #12	Nop16 (ENSMSIG00000007912) #13	Arl10 (ENSMSIG00000007895) #14	ENSMSIG00000007873 #15	Simc1 (ENSMSIG00000007664) #16	Thoc3 (ENSMSIG00000007644) #17	Cplx2 (ENSMSIG00000007612) #18	Hrh2 (ENSMSIG00000007573) #19	Sfxn1 (ENSMSIG00000007545) #20	Drd1 (ENSMSIG00000007538) #21	ENSMSIG00000007505	Msx2 (ENSMSIG00000007490) #22	ENSMSIG00000007482 ##37	ENSMSIG00000007478	Sptlc1 (ENSMSIG00000007451) #23	ENSMSIG00000007411 #24	Nfil3 (ENSMSIG00000007395) #25	Auh (ENSMSIG00000007255) #26	Syk (ENSMSIG00000007089) #27	Diras2 (ENSMSIG00000007070) #28	ENSMSIG00000007046 #29	Sema4d (ENSMSIG00000006940) #30	Secisbp2 (ENSMSIG00000006822) #31	Cks2 (ENSMSIG00000006808) #32	ENSMSIG00000006791	ENSMSIG00000006695 #33	S1pr3 (ENSMSIG00000006680) #34
Ryukyu mouse	MODERN SPECIES	4	Cdhr2 (MGP_CAROLIEiJ_G0018543) #8	MGP_CAROLIEiJ_G0018542	Faf2 (MGP_CAROLIEiJ_G0018541) #10	Cltb (MGP_CAROLIEiJ_G0018540) #11	Higd2a (MGP_CAROLIEiJ_G0018539) #12	Nop16 (MGP_CAROLIEiJ_G0018538) #13	Arl10 (MGP_CAROLIEiJ_G0018537) #14	MGP_CAROLIEiJ_G0018536	Simc1 (MGP_CAROLIEiJ_G0018535) #16	Thoc3 (MGP_CAROLIEiJ_G0018534) #17	Cplx2 (MGP_CAROLIEiJ_G0018533) #18	Hrh2 (MGP_CAROLIEiJ_G0018532) #19	Sfxn1 (MGP_CAROLIEiJ_G0018531) #20	Drd1 (MGP_CAROLIEiJ_G0018530) #21	MGP_CAROLIEiJ_G0018529	Msx2 (MGP_CAROLIEiJ_G0018528) #22	Sptlc1 (MGP_CAROLIEiJ_G0018527) #23	Ror2 (MGP_CAROLIEiJ_G0018526) #24	Nfil3 (MGP_CAROLIEiJ_G0018525) #25	Auh (MGP_CAROLIEiJ_G0018524) #26	Syk (MGP_CAROLIEiJ_G0018523) #27	Diras2 (MGP_CAROLIEiJ_G0018522) #28	Gadd45g (MGP_CAROLIEiJ_G0018521) #29	Sema4d (MGP_CAROLIEiJ_G0018520) #30	MGP_CAROLIEiJ_G0018519	Secisbp2 (MGP_CAROLIEiJ_G0018518) #31	Cks2 (MGP_CAROLIEiJ_G0018517) #32	MGP_CAROLIEiJ_G0018516 #33	S1pr3 (MGP_CAROLIEiJ_G0018515) #34	Nxnl2 (MGP_CAROLIEiJ_G0018514) #35	Spin1 (MGP_CAROLIEiJ_G0018513) #36
Shrew mouse	MODERN SPECIES	7	Gprin1 (MGP_PahariEiJ_G0019609) #7	Cdhr2 (MGP_PahariEiJ_G0019608) #8	Rnf44 (MGP_PahariEiJ_G0019607) #9	MGP_PahariEiJ_G0019606 #10	Cltb (MGP_PahariEiJ_G0019605) #11	Higd2a (MGP_PahariEiJ_G0019604) #12	Nop16 (MGP_PahariEiJ_G0019603) #13	Arl10 (MGP_PahariEiJ_G0019602) #14	MGP_PahariEiJ_G0019601	MGP_PahariEiJ_G0019600 #16	Thoc3 (MGP_PahariEiJ_G0019599) #17	Cplx2 (MGP_PahariEiJ_G0019598) #18	Hrh2 (MGP_PahariEiJ_G0019597) #19	Sfxn1 (MGP_PahariEiJ_G0019596) #20	Drd1 (MGP_PahariEiJ_G0019595) #21	Msx2 (MGP_PahariEiJ_G0019594) #22	Sptlc1 (MGP_PahariEiJ_G0019593) #23	Ror2 (MGP_PahariEiJ_G0019592) #24	Nfil3 (MGP_PahariEiJ_G0019591) #25	Auh (MGP_PahariEiJ_G0019590) #26	Syk (MGP_PahariEiJ_G0019589) #27	Diras2 (MGP_PahariEiJ_G0019588) #28	Gadd45g (MGP_PahariEiJ_G0019587) #29	Sema4d (MGP_PahariEiJ_G0019586) #30	MGP_PahariEiJ_G0019585	Secisbp2 (MGP_PahariEiJ_G0019584) #31	Cks2 (MGP_PahariEiJ_G0019583) #32	MGP_PahariEiJ_G0019582 #33	S1pr3 (MGP_PahariEiJ_G0019581) #34	Nxnl2 (MGP_PahariEiJ_G0019580) #35	Spin1 (MGP_PahariEiJ_G0019579) #36
Rat	MODERN SPECIES	8	Cdhr2 (ENSRNOG00000017917) #8	Rnf44 (ENSRNOG00000017641) #9	Faf2 (ENSRNOG00000017607) #10	Cltb (ENSRNOG00000017506) #11	Higd2a (ENSRNOG00000017372) #12	Nop16 (ENSRNOG00000017284) #13	Arl10 (ENSRNOG00000045948) #14	LOC306766 (ENSRNOG00000017133) #15	Simc1 (ENSRNOG00000016932) #16	Thoc3 (ENSRNOG00000000104) #17	Cplx2 (ENSRNOG00000000105) #18	Hrh2 (ENSRNOG00000018260) #19	LOC108348509 (ENSRNOG00000033625)	Sfxn1 (ENSRNOG00000018279) #20	Drd1 (ENSRNOG00000023688) #21	Msx2 (ENSRNOG00000018355) #22	ENSRNOG00000063656	Sptlc1 (ENSRNOG00000010882) #23	Uqcc1-ps1 (ENSRNOG00000028997)	ENSRNOG00000068509	Ror2 (ENSRNOG00000053232) #24	Nfil3 (ENSRNOG00000011668) #25	Auh (ENSRNOG00000011684) #26	Syk (ENSRNOG00000012160) #27	Diras2 (ENSRNOG00000062731) #28	Gadd45g (ENSRNOG00000013090) #29	Sema4d (ENSRNOG00000013679) #30	Secisbp2 (ENSRNOG00000013773) #31	Shc3 (ENSRNOG00000014366) #33	S1pr3 (ENSRNOG00000014524) #34	Nxnl2 (ENSRNOG00000014538) #35