Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00940000156641 #7	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00640000091672	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00950000182938.a #26	ENSGT00940000158129 #27	ENSGT00940000153451.a.a.b #28	ENSGT00390000000537 #29	ENSGT00940000160017 #30	ENSGT00390000003426 #31	ENSGT00910000144291 #32	ENSGT00940000160186 #33	ENSGT00940000157197 #34	ENSGT00940000158553.b.b #35	ENSGT00940000161160 #36	ENSGT00940000162796
Glires	ANCESTRAL SPECIES	7	ENSGT00940000156641 #7	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00640000091672	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00950000182938.a #26	ENSGT00940000158129 #27	ENSGT00940000153451.a.a.b #28	ENSGT00390000000537 #29	ENSGT00940000160017 #30	ENSGT00390000003426 #31	ENSGT00910000144291 #32	ENSGT00940000160186 #33	ENSGT00940000157197 #34	ENSGT00940000158553.b.b #35	ENSGT00940000161160 #36	ENSGT00940000162796
Lagomorpha	ANCESTRAL SPECIES	32	ENSGT00390000007501	ENSGT00940000156641 #7	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00950000182938.a #26	ENSGT00940000158129 #27	ENSGT00940000153451.a.a.b #28	ENSGT00390000000537 #29	ENSGT00940000160017 #30	ENSGT00390000003426 #31	ENSGT00910000144291 #32	ENSGT00940000160186 #33	ENSGT00940000157197 #34	ENSGT00940000158553.b.b #35	ENSGT00940000161160 #36	ENSGT00950000183175.B.a #37
Rabbit	MODERN SPECIES	14	UBTD2 (ENSOCUG00000005108) #7	ENSOCUG00000034187 #8	SH3PXD2B (ENSOCUG00000006784) #9	NEURL1B (ENSOCUG00000027790) #10	DUSP1 (ENSOCUG00000007999) #11	ERGIC1 (ENSOCUG00000029231) #12	RPL26L1 (ENSOCUG00000006172) #13	ATP6V0E1 (ENSOCUG00000006174) #14	CREBRF (ENSOCUG00000000038) #15	BNIP1 (ENSOCUG00000000040) #16	NKX2-5 (ENSOCUG00000000041) #17	STC2 (ENSOCUG00000007985) #18	ENSOCUG00000014283 #19	CPEB4 (ENSOCUG00000008971) #20	NSG2 (ENSOCUG00000038430) #21	MSX2 (ENSOCUG00000009161) #22	DRD1 (ENSOCUG00000004825) #23	SFXN1 (ENSOCUG00000004827) #24	HRH2 (ENSOCUG00000011627) #25	CPLX2 (ENSOCUG00000025615) #26	THOC3 (ENSOCUG00000016387) #27	SIMC1 (ENSOCUG00000012178) #28	KIAA1191 (ENSOCUG00000012191) #29	ENSOCUG00000016961 #30	NOP16 (ENSOCUG00000013171) #31	ENSOCUG00000032806 #32	CLTB (ENSOCUG00000014826) #33	FAF2 (ENSOCUG00000014822) #34	ENSOCUG00000027661 #35	CDHR2 (ENSOCUG00000011956) #36	ENSOCUG00000002510 #37
Pika	MODERN SPECIES	7029																MSX2 (ENSOPRG00000007719) #22
Rodentia	ANCESTRAL SPECIES	7	ENSGT00940000156641 #7	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00640000091672	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00950000182938.a #26	ENSGT00940000158129 #27	ENSGT00940000153451.a.a.b #28	ENSGT00390000000537 #29	ENSGT00940000160017 #30	ENSGT00390000003426 #31	ENSGT00910000144291 #32	ENSGT00940000160186 #33	ENSGT00940000157197 #34	ENSGT00940000158553.b.b #35	ENSGT00940000161160 #36	ENSGT00940000162796
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.a.b.b.b.q ##13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00640000091672	ENSGT00390000000483.a.a #21	ENSGT00940000167072	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00950000182938.a #26	ENSGT00940000158129 #27	ENSGT00940000153451.a.a.b #28	ENSGT00390000000537 #29	ENSGT00940000160017 #30	ENSGT00390000003426 #31	ENSGT00910000144291 #32	ENSGT00940000160186 #33	ENSGT00940000157197 #34	ENSGT00940000158553.b.b #35	ENSGT00940000161160 #36	ENSGT00940000162796
Kangaroo rat	MODERN SPECIES	348								ENSDORG00000015744 #10	Dusp1 (ENSDORG00000023398) #11	Ergic1 (ENSDORG00000005547) #12	Atp6v0e (ENSDORG00000029864) #14	ENSDORG00000025737 #15	Bnip1 (ENSDORG00000023237) #16	Stc2 (ENSDORG00000004431) #18	ENSDORG00000029006	Msx2 (ENSDORG00000008104) #22	Drd1 (ENSDORG00000024953) #23	Sfxn1 (ENSDORG00000007979) #24	Hrh2 (ENSDORG00000029617) #25	Cplx2 (ENSDORG00000007090) #26	Thoc3 (ENSDORG00000014084) #27	ENSDORG00000023760 #28	ENSDORG00000028803	ENSDORG00000023592 #30	Nop16 (ENSDORG00000008872) #31	Higd2a (ENSDORG00000028196) #32	Cltb (ENSDORG00000008875) #33	Faf2 (ENSDORG00000008675) #34	ENSDORG00000013551 #35	Cdhr2 (ENSDORG00000024062) #36	Sncb (ENSDORG00000006368) #37
Myomorpha	ANCESTRAL SPECIES																	ENSGT00940000159824 #22
Muroidea	ANCESTRAL SPECIES	48	ENSGT00940000162796	ENSGT00940000161160 #36	ENSGT00940000158553.b.b #35	ENSGT00940000157197 #34	ENSGT00940000160186 #33	ENSGT00910000144291 #32	ENSGT00390000003426 #31	ENSGT00940000160017 #30	ENSGT00390000000537 #29	ENSGT00940000153451.a.a.b #28	ENSGT00940000158129 #27	ENSGT00950000182938.a #26	ENSGT00940000158761 #25	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000155857 #23	ENSGT00940000159824 #22	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540	ENSGT00940000157484	ENSGT00940000159053	ENSGT00940000158196	ENSGT00950000182964.a.b.a	ENSGT00940000159594	ENSGT00390000013795	ENSGT00490000043356.b	ENSGT00950000182971.C	ENSGT00950000182870.a.a.a.b	ENSGT01050000244887.A.b.b	ENSGT00940000161260	ENSGT00950000182925.D.a.a.b.a
Muroidea_A	ANCESTRAL SPECIES	14	ENSGT00940000162796	ENSGT00940000161160 #36	ENSGT00940000158553.b.b #35	ENSGT00940000157197 #34	ENSGT00940000160186 #33	ENSGT00910000144291 #32	ENSGT00390000003426 #31	ENSGT00940000160017 #30	ENSGT00390000000537 #29	ENSGT00940000153451.a.a.b #28	ENSGT00940000158129 #27	ENSGT00950000182938.a #26	ENSGT00940000158761 #25	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000155857 #23	ENSGT00940000159824 #22	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540	ENSGT00940000157484	ENSGT00940000159053	ENSGT00940000158196	ENSGT00950000182964.a.b.a	ENSGT00940000159594	ENSGT00390000013795	ENSGT00490000043356.b	ENSGT00950000182971.C	ENSGT00950000182870.a.a.a.b	ENSGT01050000244887.A.b.b	ENSGT00940000161260	ENSGT00950000182925.D.a.a.b.a
Cricetidae	ANCESTRAL SPECIES	22	ENSGT00940000162796	ENSGT00940000161160 #36	ENSGT00940000158553.b.b #35	ENSGT00940000157197 #34	ENSGT00940000160186 #33	ENSGT00910000144291 #32	ENSGT00390000003426 #31	ENSGT00940000160017 #30	ENSGT00390000000537 #29	ENSGT00940000153451.a.a.b #28	ENSGT00940000158129 #27	ENSGT00950000182938.a #26	ENSGT00940000158761 #25	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000155857 #23	ENSGT00940000159824 #22	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540	ENSGT00940000157484	ENSGT00940000159053	ENSGT00940000158196	ENSGT00950000182964.a.b.a	ENSGT00940000159594	ENSGT00390000013795	ENSGT00490000043356.b	ENSGT00950000182971.C	ENSGT00950000182870.a.a.a.b	ENSGT01050000244887.A.b.b	ENSGT00940000161260	ENSGT00950000182925.D.a.a.b.a
Cricetinae	ANCESTRAL SPECIES	20	ENSGT00940000162796	ENSGT00940000161160 #36	ENSGT00940000158553.b.b #35	ENSGT00940000157197 #34	ENSGT00940000160186 #33	ENSGT00910000144291 #32	ENSGT00390000003426 #31	ENSGT00940000160017 #30	ENSGT00390000000537 #29	ENSGT00940000153451.a.a.b #28	ENSGT00940000158129 #27	ENSGT00950000182938.a #26	ENSGT00940000158761 #25	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000155857 #23	ENSGT00940000159824 #22	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540	ENSGT00940000157484	ENSGT00940000159053	ENSGT00940000158196	ENSGT00950000182964.a.b.a	ENSGT00940000159594	ENSGT00390000013795	ENSGT00490000043356.b	ENSGT00950000182971.C	ENSGT00950000182870.a.a.a.b	ENSGT01050000244887.A.b.b	ENSGT00940000161260	ENSGT00950000182925.D.a.a.b.a
Chinese hamster chok1gshd	MODERN SPECIES	317	Gprin1 (ENSCGRG00001015027)	Cdhr2 (ENSCGRG00001017189) #36	Rnf44 (ENSCGRG00001023365) #35	Faf2 (ENSCGRG00001017510) #34	Cltb (ENSCGRG00001022634) #33	Higd2a (ENSCGRG00001018479) #32	Nop16 (ENSCGRG00001004259) #31	ENSCGRG00001022470 #30	4833439L19Rik (ENSCGRG00001017120) #29	ENSCGRG00001015440 #28	Thoc3 (ENSCGRG00001022944) #27	Cplx2 (ENSCGRG00001001516) #26	Hrh2 (ENSCGRG00001018186) #25	Sfxn1 (ENSCGRG00001015346) #24	Drd1 (ENSCGRG00001002155) #23	Msx2 (ENSCGRG00001010113) #22	SPTLC1 (ENSCGRG00001000731)	Ror2 (ENSCGRG00001015097)	Nfil3 (ENSCGRG00001011593)	Auh (ENSCGRG00001015522)	Syk (ENSCGRG00001023272)	Diras2 (ENSCGRG00001007707)	Gadd45g (ENSCGRG00001021226)	Sema4d (ENSCGRG00001007580)	ENSCGRG00001000519	Secisbp2 (ENSCGRG00001013930)	ENSCGRG00001018773	ENSCGRG00001016284	Shc3 (ENSCGRG00001009638)	S1pr3 (ENSCGRG00001006335)	ENSCGRG00001000473
Golden Hamster	MODERN SPECIES	623																Msx2 (ENSMAUG00000011757) #22	ENSMAUG00000012346	Sptlc1 (ENSMAUG00000014497)	Ror2 (ENSMAUG00000002294)	Nfil3 (ENSMAUG00000008018)	Auh (ENSMAUG00000009561)	Syk (ENSMAUG00000019080)	Diras2 (ENSMAUG00000019617)	Gadd45g (ENSMAUG00000020102)	Sema4d (ENSMAUG00000018331)	ENSMAUG00000008086	Secisbp2 (ENSMAUG00000008659)	Cks2 (ENSMAUG00000010312)	Shc3 (ENSMAUG00000010478)	S1pr3 (ENSMAUG00000013844)	Nxnl2 (ENSMAUG00000014236)
Cricetidae_B	ANCESTRAL SPECIES	22	ENSGT00940000162796	ENSGT00940000161160 #36	ENSGT00940000158553.b.b #35	ENSGT00940000157197 #34	ENSGT00940000160186 #33	ENSGT00910000144291 #32	ENSGT00390000003426 #31	ENSGT00940000160017 #30	ENSGT00390000000537 #29	ENSGT00940000153451.a.a.b #28	ENSGT00940000158129 #27	ENSGT00950000182938.a #26	ENSGT00940000158761 #25	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000155857 #23	ENSGT00940000159824 #22	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540	ENSGT00940000157484	ENSGT00940000159053	ENSGT00940000158196	ENSGT00950000182964.a.b.a	ENSGT00940000159594	ENSGT00390000013795	ENSGT00490000043356.b	ENSGT00950000182971.C	ENSGT00950000182870.a.a.a.b	ENSGT01050000244887.A.b.b	ENSGT00940000161260	ENSGT00950000182925.D.a.a.b.a
Northern American deer mouse	MODERN SPECIES	18	Gprin1 (ENSPEMG00000020019)	Cdhr2 (ENSPEMG00000020109) #36	Rnf44 (ENSPEMG00000020162) #35	Faf2 (ENSPEMG00000020218) #34	Cltb (ENSPEMG00000020248) #33	Higd2a (ENSPEMG00000029522) #32	ENSPEMG00000020268 #31	Arl10 (ENSPEMG00000025962) #30	ENSPEMG00000000174 #29	Simc1 (ENSPEMG00000000546) #28	Thoc3 (ENSPEMG00000003118) #27	Cplx2 (ENSPEMG00000026608) #26	Hrh2 (ENSPEMG00000005710) #25	Sfxn1 (ENSPEMG00000007184) #24	Drd1 (ENSPEMG00000024996) #23	Msx2 (ENSPEMG00000026392) #22	Sptlc1 (ENSPEMG00000008860)	Ror2 (ENSPEMG00000011104)	Nfil3 (ENSPEMG00000026759)	ENSPEMG00000009874	Auh (ENSPEMG00000012682)	Syk (ENSPEMG00000020058)	Diras2 (ENSPEMG00000028522)	ENSPEMG00000012673	Gadd45g (ENSPEMG00000020132)	Sema4d (ENSPEMG00000020153)	ENSPEMG00000020182	Secisbp2 (ENSPEMG00000020212)	Cks2 (ENSPEMG00000029632)	Shc3 (ENSPEMG00000025591)	S1pr3 (ENSPEMG00000000430)
Prairie vole	MODERN SPECIES	3	Sncb (ENSMOCG00000000915) #37	Cdhr2 (ENSMOCG00000002152) #36	Rnf44 (ENSMOCG00000006523) #35	Faf2 (ENSMOCG00000009059) #34	Cltb (ENSMOCG00000016261) #33	Higd2a (ENSMOCG00000013069) #32	Nop16 (ENSMOCG00000020788) #31	Arl10 (ENSMOCG00000017185) #30	ENSMOCG00000014160	Simc1 (ENSMOCG00000006572) #28	Thoc3 (ENSMOCG00000015290) #27	Cplx2 (ENSMOCG00000013635) #26	Hrh2 (ENSMOCG00000008866) #25	Sfxn1 (ENSMOCG00000021338) #24	DRD1A (ENSMOCG00000017186) #23	Msx2 (ENSMOCG00000014346) #22	Sptlc1 (ENSMOCG00000015960)	Ror2 (ENSMOCG00000022154)	Nfil3 (ENSMOCG00000014931)	Auh (ENSMOCG00000013707)	Syk (ENSMOCG00000009978)	Diras2 (ENSMOCG00000016630)	Iars (ENSMOCG00000022610)	ENSMOCG00000008757	Ogn (ENSMOCG00000000784)	Omd (ENSMOCG00000016728)	Aspn (ENSMOCG00000005160)	Ecm2 (ENSMOCG00000021149)	Cenpp (ENSMOCG00000017249)	Ippk (ENSMOCG00000017343)	Bicd2 (ENSMOCG00000006497)
Murinae	ANCESTRAL SPECIES	21	ENSGT00940000162796	ENSGT00940000161160 #36	ENSGT00940000158553.b.b #35	ENSGT00940000157197 #34	ENSGT00940000160186 #33	ENSGT00910000144291 #32	ENSGT00390000003426 #31	ENSGT00940000160017 #30	ENSGT00390000000537 #29	ENSGT00940000153451.a.a.b #28	ENSGT00940000158129 #27	ENSGT00950000182938.a #26	ENSGT00940000158761 #25	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000155857 #23	ENSGT00940000159824 #22	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540	ENSGT00940000157484	ENSGT00940000159053	ENSGT00940000158196	ENSGT00950000182964.a.b.a	ENSGT00940000159594	ENSGT00390000013795	ENSGT00490000043356.b	ENSGT00950000182971.C	ENSGT00950000182870.a.a.a.b	ENSGT01050000244887.A.b.b	ENSGT00940000161260	ENSGT00950000182925.D.a.a.b.a
Mus	ANCESTRAL SPECIES	18	ENSGT00940000162796	ENSGT00940000161160 #36	ENSGT00940000158553.b.b #35	ENSGT00940000157197 #34	ENSGT00940000160186 #33	ENSGT00910000144291 #32	ENSGT00390000003426 #31	ENSGT00940000160017 #30	ENSGT00390000000537 #29	ENSGT00940000153451.a.a.b #28	ENSGT00940000158129 #27	ENSGT00950000182938.a #26	ENSGT00940000158761 #25	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000155857 #23	ENSGT00940000159824 #22	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540	ENSGT00940000157484	ENSGT00940000159053	ENSGT00940000158196	ENSGT00950000182964.a.b.a	ENSGT00940000159594	ENSGT00390000013795	ENSGT00490000043356.b	ENSGT00950000182971.C	ENSGT00950000182870.a.a.a.b	ENSGT01050000244887.A.b.b	ENSGT00940000161260	ENSGT00950000182925.D.a.a.b.a
Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000162796	ENSGT00940000161160 #36	ENSGT00940000158553.b.b #35	ENSGT00940000157197 #34	ENSGT00940000160186 #33	ENSGT00910000144291 #32	ENSGT00390000003426 #31	ENSGT00940000160017 #30	ENSGT00390000000537 #29	ENSGT00940000153451.a.a.b #28	ENSGT00940000158129 #27	ENSGT00950000182938.a #26	ENSGT00940000158761 #25	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000155857 #23	ENSGT00940000159824 #22	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540	ENSGT00940000157484	ENSGT00940000159053	ENSGT00940000158196	ENSGT00950000182964.a.b.a	ENSGT00940000159594	ENSGT00390000013795	ENSGT00490000043356.b	ENSGT00950000182971.C	ENSGT00950000182870.a.a.a.b	ENSGT01050000244887.A.b.b	ENSGT00940000161260	ENSGT00950000182925.D.a.a.b.a
Mus_B	ANCESTRAL SPECIES	13	ENSGT00940000162796	ENSGT00940000161160 #36	ENSGT00940000158553.b.b #35	ENSGT00940000157197 #34	ENSGT00940000160186 #33	ENSGT00910000144291 #32	ENSGT00390000003426 #31	ENSGT00940000160017 #30	ENSGT00390000000537 #29	ENSGT00940000153451.a.a.b #28	ENSGT00940000158129 #27	ENSGT00950000182938.a #26	ENSGT00940000158761 #25	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000155857 #23	ENSGT00940000159824 #22	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540	ENSGT00940000157484	ENSGT00940000159053	ENSGT00940000158196	ENSGT00950000182964.a.b.a	ENSGT00940000159594	ENSGT00390000013795	ENSGT00490000043356.b	ENSGT00950000182971.C	ENSGT00950000182870.a.a.a.b	ENSGT01050000244887.A.b.b	ENSGT00940000161260	ENSGT00950000182925.D.a.a.b.a.c
Mouse	MODERN SPECIES	4	Gprin1 (ENSMUSG00000069227)	Cdhr2 (ENSMUSG00000034918) #36	Rnf44 (ENSMUSG00000034928) #35	Faf2 (ENSMUSG00000025873) #34	Cltb (ENSMUSG00000047547) #33	Higd2a (ENSMUSG00000025868) #32	Nop16 (ENSMUSG00000025869) #31	Arl10 (ENSMUSG00000025870) #30	4833439L19Rik (ENSMUSG00000025871) #29	Simc1 (ENSMUSG00000043183) #28	Thoc3 (ENSMUSG00000025872) #27	Cplx2 (ENSMUSG00000025867) #26	Hrh2 (ENSMUSG00000034987) #25	Sfxn1 (ENSMUSG00000021474) #24	Drd1 (ENSMUSG00000021478) #23	Msx2 (ENSMUSG00000021469) #22	Sptlc1 (ENSMUSG00000021468)	Ror2 (ENSMUSG00000021464)	Nfil3 (ENSMUSG00000056749)	Auh (ENSMUSG00000021460)	Syk (ENSMUSG00000021457)	Diras2 (ENSMUSG00000047842)	Gadd45g (ENSMUSG00000021453)	Sema4d (ENSMUSG00000021451)	Secisbp2 (ENSMUSG00000035139)	Cks2 (ENSMUSG00000062248)	Shc3 (ENSMUSG00000021448)	S1pr3 (ENSMUSG00000067586)	Nxnl2 (ENSMUSG00000021396)	Spin1 (ENSMUSG00000021395)	Gm8765 (ENSMUSG00000094918)
Mus_C	ANCESTRAL SPECIES	10	ENSGT00940000162796	ENSGT00940000161160 #36	ENSGT00940000158553.b.b #35	ENSGT00940000157197 #34	ENSGT00940000160186 #33	ENSGT00910000144291 #32	ENSGT00390000003426 #31	ENSGT00940000160017 #30	ENSGT00390000000537.o #29	ENSGT00940000153451.a.a.b #28	ENSGT00940000158129 #27	ENSGT00950000182938.a #26	ENSGT00940000158761 #25	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000155857 #23	ENSGT00940000159824 #22	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540	ENSGT00940000157484	ENSGT00940000159053	ENSGT00940000158196	ENSGT00950000182964.a.b.a	ENSGT00940000159594	ENSGT00390000013795	ENSGT00490000043356.b	ENSGT00950000182971.C	ENSGT00950000182870.a.a.a.b	ENSGT01050000244887.A.b.b	ENSGT00940000161260	ENSGT00950000182925.D.a.a.b.a.c
spretus	MODERN SPECIES	4	Cdhr2 (MGP_SPRETEiJ_G0019423) #36	Rnf44 (MGP_SPRETEiJ_G0019422) #35	Faf2 (MGP_SPRETEiJ_G0019421) #34	Cltb (MGP_SPRETEiJ_G0019420) #33	Higd2a (MGP_SPRETEiJ_G0019419) #32	Nop16 (MGP_SPRETEiJ_G0019418) #31	Arl10 (MGP_SPRETEiJ_G0019417) #30	4833439L19Rik (MGP_SPRETEiJ_G0019416) #29	Simc1 (MGP_SPRETEiJ_G0019415) #28	Thoc3 (MGP_SPRETEiJ_G0019414) #27	Cplx2 (MGP_SPRETEiJ_G0019413) #26	Hrh2 (MGP_SPRETEiJ_G0019412) #25	Sfxn1 (MGP_SPRETEiJ_G0019411) #24	Drd1 (MGP_SPRETEiJ_G0019410) #23	MGP_SPRETEiJ_G0019409	Msx2 (MGP_SPRETEiJ_G0019408) #22	Sptlc1 (MGP_SPRETEiJ_G0019407)	Ror2 (MGP_SPRETEiJ_G0019406)	Nfil3 (MGP_SPRETEiJ_G0019405)	Auh (MGP_SPRETEiJ_G0019404)	Syk (MGP_SPRETEiJ_G0019403)	Gadd45g (MGP_SPRETEiJ_G0019402)	Sema4d (MGP_SPRETEiJ_G0019401)	MGP_SPRETEiJ_G0019400	Secisbp2 (MGP_SPRETEiJ_G0019399)	Cks2 (MGP_SPRETEiJ_G0019398)	MGP_SPRETEiJ_G0019397	S1pr3 (MGP_SPRETEiJ_G0019396)	Nxnl2 (MGP_SPRETEiJ_G0019395)	Spin1 (MGP_SPRETEiJ_G0019394)	Nutm2 (MGP_SPRETEiJ_G0019393)
Steppe mouse	MODERN SPECIES	3336	Cdhr2 (ENSMSIG00000008108) #36	Rnf44 (ENSMSIG00000008024) #35	Faf2 (ENSMSIG00000007971) #34	Cltb (ENSMSIG00000007939) #33	Higd2a (ENSMSIG00000007929) #32	Nop16 (ENSMSIG00000007912) #31	Arl10 (ENSMSIG00000007895) #30	ENSMSIG00000007873 #29	Simc1 (ENSMSIG00000007664) #28	Thoc3 (ENSMSIG00000007644) #27	Cplx2 (ENSMSIG00000007612) #26	Hrh2 (ENSMSIG00000007573) #25	Sfxn1 (ENSMSIG00000007545) #24	Drd1 (ENSMSIG00000007538) #23	ENSMSIG00000007505	Msx2 (ENSMSIG00000007490) #22	ENSMSIG00000007482	ENSMSIG00000007478	Sptlc1 (ENSMSIG00000007451)	ENSMSIG00000007411	Nfil3 (ENSMSIG00000007395)	Auh (ENSMSIG00000007255)	Syk (ENSMSIG00000007089)	Diras2 (ENSMSIG00000007070)	ENSMSIG00000007046	Sema4d (ENSMSIG00000006940)	Secisbp2 (ENSMSIG00000006822)	Cks2 (ENSMSIG00000006808)	ENSMSIG00000006791	ENSMSIG00000006695	S1pr3 (ENSMSIG00000006680)
Ryukyu mouse	MODERN SPECIES	4	Cdhr2 (MGP_CAROLIEiJ_G0018543) #36	MGP_CAROLIEiJ_G0018542	Faf2 (MGP_CAROLIEiJ_G0018541) #34	Cltb (MGP_CAROLIEiJ_G0018540) #33	Higd2a (MGP_CAROLIEiJ_G0018539) #32	Nop16 (MGP_CAROLIEiJ_G0018538) #31	Arl10 (MGP_CAROLIEiJ_G0018537) #30	MGP_CAROLIEiJ_G0018536	Simc1 (MGP_CAROLIEiJ_G0018535) #28	Thoc3 (MGP_CAROLIEiJ_G0018534) #27	Cplx2 (MGP_CAROLIEiJ_G0018533) #26	Hrh2 (MGP_CAROLIEiJ_G0018532) #25	Sfxn1 (MGP_CAROLIEiJ_G0018531) #24	Drd1 (MGP_CAROLIEiJ_G0018530) #23	MGP_CAROLIEiJ_G0018529	Msx2 (MGP_CAROLIEiJ_G0018528) #22	Sptlc1 (MGP_CAROLIEiJ_G0018527)	Ror2 (MGP_CAROLIEiJ_G0018526)	Nfil3 (MGP_CAROLIEiJ_G0018525)	Auh (MGP_CAROLIEiJ_G0018524)	Syk (MGP_CAROLIEiJ_G0018523)	Diras2 (MGP_CAROLIEiJ_G0018522)	Gadd45g (MGP_CAROLIEiJ_G0018521)	Sema4d (MGP_CAROLIEiJ_G0018520)	MGP_CAROLIEiJ_G0018519	Secisbp2 (MGP_CAROLIEiJ_G0018518)	Cks2 (MGP_CAROLIEiJ_G0018517)	MGP_CAROLIEiJ_G0018516	S1pr3 (MGP_CAROLIEiJ_G0018515)	Nxnl2 (MGP_CAROLIEiJ_G0018514)	Spin1 (MGP_CAROLIEiJ_G0018513)
Shrew mouse	MODERN SPECIES	7	Gprin1 (MGP_PahariEiJ_G0019609)	Cdhr2 (MGP_PahariEiJ_G0019608) #36	Rnf44 (MGP_PahariEiJ_G0019607) #35	MGP_PahariEiJ_G0019606 #34	Cltb (MGP_PahariEiJ_G0019605) #33	Higd2a (MGP_PahariEiJ_G0019604) #32	Nop16 (MGP_PahariEiJ_G0019603) #31	Arl10 (MGP_PahariEiJ_G0019602) #30	MGP_PahariEiJ_G0019601	MGP_PahariEiJ_G0019600 #28	Thoc3 (MGP_PahariEiJ_G0019599) #27	Cplx2 (MGP_PahariEiJ_G0019598) #26	Hrh2 (MGP_PahariEiJ_G0019597) #25	Sfxn1 (MGP_PahariEiJ_G0019596) #24	Drd1 (MGP_PahariEiJ_G0019595) #23	Msx2 (MGP_PahariEiJ_G0019594) #22	Sptlc1 (MGP_PahariEiJ_G0019593)	Ror2 (MGP_PahariEiJ_G0019592)	Nfil3 (MGP_PahariEiJ_G0019591)	Auh (MGP_PahariEiJ_G0019590)	Syk (MGP_PahariEiJ_G0019589)	Diras2 (MGP_PahariEiJ_G0019588)	Gadd45g (MGP_PahariEiJ_G0019587)	Sema4d (MGP_PahariEiJ_G0019586)	MGP_PahariEiJ_G0019585	Secisbp2 (MGP_PahariEiJ_G0019584)	Cks2 (MGP_PahariEiJ_G0019583)	MGP_PahariEiJ_G0019582	S1pr3 (MGP_PahariEiJ_G0019581)	Nxnl2 (MGP_PahariEiJ_G0019580)	Spin1 (MGP_PahariEiJ_G0019579)
Rat	MODERN SPECIES	8	Cdhr2 (ENSRNOG00000017917) #36	Rnf44 (ENSRNOG00000017641) #35	Faf2 (ENSRNOG00000017607) #34	Cltb (ENSRNOG00000017506) #33	Higd2a (ENSRNOG00000017372) #32	Nop16 (ENSRNOG00000017284) #31	Arl10 (ENSRNOG00000045948) #30	LOC306766 (ENSRNOG00000017133) #29	Simc1 (ENSRNOG00000016932) #28	Thoc3 (ENSRNOG00000000104) #27	Cplx2 (ENSRNOG00000000105) #26	Hrh2 (ENSRNOG00000018260) #25	LOC108348509 (ENSRNOG00000033625)	Sfxn1 (ENSRNOG00000018279) #24	Drd1 (ENSRNOG00000023688) #23	Msx2 (ENSRNOG00000018355) #22	ENSRNOG00000063656	Sptlc1 (ENSRNOG00000010882)	Uqcc1-ps1 (ENSRNOG00000028997)	ENSRNOG00000068509	Ror2 (ENSRNOG00000053232)	Nfil3 (ENSRNOG00000011668)	Auh (ENSRNOG00000011684)	Syk (ENSRNOG00000012160)	Diras2 (ENSRNOG00000062731)	Gadd45g (ENSRNOG00000013090)	Sema4d (ENSRNOG00000013679)	Secisbp2 (ENSRNOG00000013773)	Shc3 (ENSRNOG00000014366)	S1pr3 (ENSRNOG00000014524)	Nxnl2 (ENSRNOG00000014538)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1377	Rnf44 (ENSNGAG00000013720) #35	Faf2 (ENSNGAG00000019765) #34	ENSNGAG00000019059	Cltb (ENSNGAG00000004247) #33	Higd2a (ENSNGAG00000017723) #32	Nop16 (ENSNGAG00000018045) #31	Arl10 (ENSNGAG00000005101) #30	4833439L19Rik (ENSNGAG00000014894) #29	ENSNGAG00000016790 #28	ENSNGAG00000010934 #27	Cplx2 (ENSNGAG00000012588) #26	Hrh2 (ENSNGAG00000018742) #25	Sfxn1 (ENSNGAG00000000768) #24	Drd1 (ENSNGAG00000001196) #23	ENSNGAG00000010559	Msx2 (ENSNGAG00000016909) #22	Sptlc1 (ENSNGAG00000017674)	Ror2 (ENSNGAG00000011169)	Nfil3 (ENSNGAG00000004631)	Auh (ENSNGAG00000010932)	Syk (ENSNGAG00000020221)	Diras2 (ENSNGAG00000011341)	ENSNGAG00000021970
Lesser Egyptian jerboa	MODERN SPECIES	116	Lcp2 (ENSJJAG00000007933)	Kcnmb1 (ENSJJAG00000019472)	Kcnip1 (ENSJJAG00000022582)	Gabrp (ENSJJAG00000024063)	Ranbp17 (ENSJJAG00000004292)	Tlx3 (ENSJJAG00000010676)	ENSJJAG00000014455	Fgf18 (ENSJJAG00000016780)	Smim23 (ENSJJAG00000017456)	ENSJJAG00000021804	Stk10 (ENSJJAG00000023041)	Efcab9 (ENSJJAG00000009458)	Ubtd2 (ENSJJAG00000010668) #7	Sh3pxd2b (ENSJJAG00000013982) #9	Neurl1b (ENSJJAG00000016269) #10	Msx2 (ENSJJAG00000016806) #22	Nsg2 (ENSJJAG00000020822) #21	Cpeb4 (ENSJJAG00000021518) #20	Bod1 (ENSJJAG00000007832) #19	Stc2 (ENSJJAG00000012335) #18	Nkx2-5 (ENSJJAG00000015156) #17	ENSJJAG00000016444 #16	ENSJJAG00000016719 #15	ENSJJAG00000017400 #15	ENSJJAG00000017961 #14	Ergic1 (ENSJJAG00000006842) #12	Dusp1 (ENSJJAG00000010442) #11	Drd1 (ENSJJAG00000014282) #23	ENSJJAG00000011748 #24	Hrh2 (ENSJJAG00000021498) #25	Cplx2 (ENSJJAG00000010083) #26
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000156641 #7	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00640000091672	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00950000182938.a #26	ENSGT00940000158129 #27	ENSGT00940000153451.a.a.b #28	ENSGT00390000000537 #29	ENSGT00940000160017 #30	ENSGT00390000003426 #31	ENSGT00910000144291 #32	ENSGT00940000160186 #33	ENSGT00940000157197 #34	ENSGT00940000158553.b.b #35	ENSGT00940000161160 #36	ENSGT00940000162796
Sciuridae	ANCESTRAL SPECIES	33	ENSGT00940000156641 #7	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00640000091672	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00940000161175	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00390000018500.a	ENSGT00570000079564	ENSGT00940000162246	ENSGT01090000260018.C.a	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT01090000260045.C.e.a.b	ENSGT00730000111648	ENSGT00390000010671	ENSGT01090000259995.a.a.a	ENSGT01090000260018.A.a.a.b.a
Marmotini	ANCESTRAL SPECIES	38	ENSGT00940000156641 #7	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00640000091672	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00940000161175	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00390000018500.a	ENSGT01090000259995.b.b.b	ENSGT00940000162246	ENSGT01090000260045.C.e.a.b	ENSGT00730000111648	ENSGT00390000010671	ENSGT01090000259995.a.a.a	ENSGT01090000259995.a.a.b.a.b.b	ENSGT01090000260018.A.a.a.b.a	ENSGT01100000263570.A.r.c.b
Marmotini_b	ANCESTRAL SPECIES	127	ENSGT00940000156641 #7	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00640000091672	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00940000161175	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00390000018500.a	ENSGT00390000010671	ENSGT01090000259995.a.a.a
Squirrel	MODERN SPECIES	209	EFCAB9 (ENSSTOG00000020218)	UBTD2 (ENSSTOG00000014298) #7	SH3PXD2B (ENSSTOG00000028124) #9	NEURL1B (ENSSTOG00000025420) #10	DUSP1 (ENSSTOG00000023698) #11	ERGIC1 (ENSSTOG00000025246) #12	RPL26L1 (ENSSTOG00000026876) #13	ATP6V0E1 (ENSSTOG00000025255) #14	CREBRF (ENSSTOG00000004368) #15	BNIP1 (ENSSTOG00000004393) #16	NKX2-5 (ENSSTOG00000004407) #17	STC2 (ENSSTOG00000004413) #18	ENSSTOG00000030887 #19	CPEB4 (ENSSTOG00000020645) #20	NSG2 (ENSSTOG00000011148) #21	MSX2 (ENSSTOG00000000399) #22	DRD1 (ENSSTOG00000029229) #23	SFXN1 (ENSSTOG00000028251) #24	HRH2 (ENSSTOG00000007422) #25	ZNF692 (ENSSTOG00000023210)	ENSSTOG00000027630	SH3BP5L (ENSSTOG00000022558)	ENSSTOG00000026307	ENSSTOG00000034328	ENSSTOG00000027395	ENSSTOG00000025133	ENSSTOG00000023132	ENSSTOG00000026543	ENSSTOG00000027260	ENSSTOG00000028591	ENSSTOG00000024525
Arctic ground squirrel	MODERN SPECIES	783																MSX2 (ENSUPAG00010005415) #22	ENSUPAG00010005411	ENSUPAG00010005401
Alpin marmot	MODERN SPECIES	31	STK10 (ENSMMMG00000010286)	ENSMMMG00000010272	UBTD2 (ENSMMMG00000010264) #7	SH3PXD2B (ENSMMMG00000010235) #9	NEURL1B (ENSMMMG00000010222) #10	ENSMMMG00000010217 #11	ERGIC1 (ENSMMMG00000010202) #12	RPL26L1 (ENSMMMG00000010196) #13	CREBRF (ENSMMMG00000010165) #15	BNIP1 (ENSMMMG00000010131) #16	NKX2-5 (ENSMMMG00000010122) #17	STC2 (ENSMMMG00000010105) #18	ENSMMMG00000010091 #19	CPEB4 (ENSMMMG00000010044) #20	NSG2 (ENSMMMG00000009989) #21	MSX2 (ENSMMMG00000009968) #22	DRD1 (ENSMMMG00000009915) #23	SFXN1 (ENSMMMG00000009889) #24	HRH2 (ENSMMMG00000009886) #25	ZNF692 (ENSMMMG00000009869)	ENSMMMG00000009866	SH3BP5L (ENSMMMG00000009857)	OR2AJ1 (ENSMMMG00000009826)	ENSMMMG00000009785	ENSMMMG00000009765	ENSMMMG00000009757	ENSMMMG00000009753	ENSMMMG00000009740	ENSMMMG00000009704	ENSMMMG00000009679	ENSMMMG00000009674
Eurasian red squirrel	MODERN SPECIES	15	UBTD2 (ENSSVLG00005013934) #7	SH3PXD2B (ENSSVLG00005013894) #9	NEURL1B (ENSSVLG00005013785) #10	DUSP1 (ENSSVLG00005013587) #11	ERGIC1 (ENSSVLG00005013430) #12	RPL26L1 (ENSSVLG00005013228) #13	ATP6V0E1 (ENSSVLG00005013162) #14	CREBRF (ENSSVLG00005013005) #15	BNIP1 (ENSSVLG00005012932) #16	NKX2-5 (ENSSVLG00005012867) #17	STC2 (ENSSVLG00005012797) #18	ENSSVLG00005012611 #19	CPEB4 (ENSSVLG00005012332) #20	C5orf47 (ENSSVLG00005012218)	NSG2 (ENSSVLG00005012146) #21	MSX2 (ENSSVLG00005012101) #22	DRD1 (ENSSVLG00005012085) #23	ENSSVLG00005011926 #24	HRH2 (ENSSVLG00005011848) #25	ZNF692 (ENSSVLG00005011774)	ZNF672 (ENSSVLG00005011715)	SH3BP5L (ENSSVLG00005011666)	LYPD8 (ENSSVLG00005011575)	ENSSVLG00005011500	ENSSVLG00005011447	ENSSVLG00005011420	ENSSVLG00005011399	ENSSVLG00005011330	ENSSVLG00005011257	ENSSVLG00005011237	ENSSVLG00005011194
Hystricomorpha	ANCESTRAL SPECIES	30	ENSGT00390000007501	ENSGT00940000156641 #7	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00950000182938.a #26	ENSGT00940000158129 #27	ENSGT00940000153451.a.a.b.e #28	ENSGT00390000000537 #29	ENSGT00940000160017 #30	ENSGT00390000003426 #31	ENSGT00910000144291 #32	ENSGT00940000160186 #33	ENSGT00940000157197 #34	ENSGT00940000158553.b.b #35	ENSGT00940000161160 #36	ENSGT00940000162796
Hystricomorpha_a	ANCESTRAL SPECIES	28	ENSGT00390000007501	ENSGT00940000156641 #7	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00950000182938.a #26	ENSGT00940000158129 #27	ENSGT00940000153451.a.a.b.e #28	ENSGT00390000000537 #29	ENSGT00940000160017 #30	ENSGT00390000003426 #31	ENSGT00910000144291 #32	ENSGT00940000160186 #33	ENSGT00940000157197 #34	ENSGT00940000158553.b.b #35	ENSGT00940000161160 #36	ENSGT00940000162796
Hystricomorpha_b	ANCESTRAL SPECIES	19	ENSGT00390000007501	ENSGT00940000156641 #7	ENSGT00940000158396 #9	ENSGT00940000157079.a #10	ENSGT00940000159044 #11	ENSGT00530000063113.C #12	ENSGT00390000014165.c.b #13	ENSGT00940000156866 #14	ENSGT00390000007125.b #15	ENSGT00390000014412 #16	ENSGT00940000158996 #17	ENSGT00390000005989.a #18	ENSGT00940000154979 #19	ENSGT00940000154998.a.a #20	ENSGT00390000000483.a.a #21	ENSGT00940000159824 #22	ENSGT00940000155857 #23	ENSGT01030000234641.b.a.b.a.b #24	ENSGT00940000158761 #25	ENSGT00950000182938.a #26	ENSGT00940000158129 #27	ENSGT00940000153451.a.a.b.e #28	ENSGT00390000000537 #29	ENSGT00940000160017 #30	ENSGT00390000003426 #31	ENSGT00910000144291 #32	ENSGT00940000160186 #33	ENSGT00940000157197 #34	ENSGT00940000158553.b.b #35	ENSGT00940000161160 #36	ENSGT00940000162796
Long-tailed chinchilla	MODERN SPECIES	115	UBTD2 (ENSCLAG00000015134) #7	SH3PXD2B (ENSCLAG00000015389) #9	NEURL1B (ENSCLAG00000014210) #10	DUSP1 (ENSCLAG00000013473) #11	ERGIC1 (ENSCLAG00000014304) #12	RPL26L1 (ENSCLAG00000014524) #13	ATP6V0E1 (ENSCLAG00000014664) #14	CREBRF (ENSCLAG00000014588) #15	BNIP1 (ENSCLAG00000015919) #16	NKX2-5 (ENSCLAG00000013992) #17	STC2 (ENSCLAG00000013045) #18	ENSCLAG00000014408	ENSCLAG00000016125 #19	CPEB4 (ENSCLAG00000013156) #20	NSG2 (ENSCLAG00000014316) #21	MSX2 (ENSCLAG00000014001) #22	DRD1 (ENSCLAG00000014757) #23	SFXN1 (ENSCLAG00000016110) #24	HRH2 (ENSCLAG00000015189) #25	CPLX2 (ENSCLAG00000013505) #26	THOC3 (ENSCLAG00000015924) #27	ENSCLAG00000014990	ENSCLAG00000013733 #28	KIAA1191 (ENSCLAG00000013315) #29	ARL10 (ENSCLAG00000015048) #30	NOP16 (ENSCLAG00000015405) #31	ENSCLAG00000011930 #32	CLTB (ENSCLAG00000012751) #33	FAF2 (ENSCLAG00000013738) #34	RNF44 (ENSCLAG00000014006) #35	CDHR2 (ENSCLAG00000016212) #36
Degu	MODERN SPECIES	253	SH3PXD2B (ENSODEG00000001294) #9	ENSODEG00000001166	NEURL1B (ENSODEG00000001134) #10	DUSP1 (ENSODEG00000001126) #11	ERGIC1 (ENSODEG00000001101) #12	ATP6V0E1 (ENSODEG00000001083) #14	CREBRF (ENSODEG00000002364) #15	BNIP1 (ENSODEG00000002196) #16	NKX2-5 (ENSODEG00000002184) #17	STC2 (ENSODEG00000002102) #18	ENSODEG00000018739	ENSODEG00000002042	ENSODEG00000001973 #19	CPEB4 (ENSODEG00000001934) #20	NSG2 (ENSODEG00000001862) #21	MSX2 (ENSODEG00000001847) #22
Guinea pig	MODERN SPECIES	17	EFCAB9 (ENSCPOG00000026758)	UBTD2 (ENSCPOG00000034425) #7	SH3PXD2B (ENSCPOG00000039072) #9	NEURL1B (ENSCPOG00000040777) #10	DUSP1 (ENSCPOG00000013344) #11	ERGIC1 (ENSCPOG00000012183) #12	RPL26L1 (ENSCPOG00000012188) #13	ATP6V0E1 (ENSCPOG00000040227) #14	CREBRF (ENSCPOG00000014384) #15	BNIP1 (ENSCPOG00000006752) #16	NKX2-5 (ENSCPOG00000026347) #17	STC2 (ENSCPOG00000034039) #18	ENSCPOG00000026033 #19	CPEB4 (ENSCPOG00000015530) #20	NSG2 (ENSCPOG00000037038) #21	MSX2 (ENSCPOG00000038944) #22	DRD1 (ENSCPOG00000039492) #23	SFXN1 (ENSCPOG00000010321) #24	HRH2 (ENSCPOG00000003473) #25	CPLX2 (ENSCPOG00000033149) #26	THOC3 (ENSCPOG00000025805) #27	ENSCPOG00000023337 #28	KIAA1191 (ENSCPOG00000039242) #29	ARL10 (ENSCPOG00000001642) #30	NOP16 (ENSCPOG00000026072) #31	ENSCPOG00000034924 #32	CLTB (ENSCPOG00000035873) #33	FAF2 (ENSCPOG00000009319) #34	RNF44 (ENSCPOG00000023346) #35	CDHR2 (ENSCPOG00000026608) #36	GPRIN1 (ENSCPOG00000036169)
Naked mole-rat female	MODERN SPECIES	23	DUSP1 (ENSHGLG00000012633) #11	ERGIC1 (ENSHGLG00000050911) #12	ENSHGLG00000017100	ENSHGLG00000018219 #14	ENSHGLG00000021190	ENSHGLG00000017817 #15	BNIP1 (ENSHGLG00000018031) #16	NKX2-5 (ENSHGLG00000017269) #17	STC2 (ENSHGLG00000017592) #18	ENSHGLG00000041881 #19	CPEB4 (ENSHGLG00000008897) #20	C5orf47 (ENSHGLG00000040572)	ENSHGLG00000049916	ENSHGLG00000041184	NSG2 (ENSHGLG00000006062) #21	MSX2 (ENSHGLG00000017569) #22	ENSHGLG00000049074	ENSHGLG00000036934	DRD1 (ENSHGLG00000016781) #23	SFXN1 (ENSHGLG00000045847) #24	HRH2 (ENSHGLG00000018733) #25	CPLX2 (ENSHGLG00000033963) #26	THOC3 (ENSHGLG00000008773) #27	ENSHGLG00000034727	ENSHGLG00000036140	ENSHGLG00000006385 #28	ENSHGLG00000040734 #28	ENSHGLG00000005591 #29	ARL10 (ENSHGLG00000005509) #30	NOP16 (ENSHGLG00000045329) #31	HIGD2A (ENSHGLG00000038701) #32
Tree shrew	MODERN SPECIES	853																MSX2 (ENSTBEG00000014273) #22