Murinae	ANCESTRAL SPECIES	10	ENSGT00940000159045 #8	ENSGT00680000100508 #9	ENSGT00940000162855.a.b	ENSGT00940000160430 #10	ENSGT00940000155594 #11	ENSGT00940000154025.a #12	ENSGT00390000010763 #13	ENSGT00940000159342 #14	ENSGT00940000159758 #15	ENSGT00940000154427.B	ENSGT00940000164153 #17	ENSGT00940000163183 #18	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a.t #22	ENSGT00940000153456.a #23	ENSGT00940000162472 #24	ENSGT00950000183140.a.a.m.a.b #25	ENSGT00940000161068 #26	ENSGT00940000162747 #27	ENSGT00940000153837.a.a #28	ENSGT00940000162943 #29	ENSGT00940000163360	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #30	ENSGT00940000153378.a.a #31	ENSGT00940000154560.b #32	ENSGT00940000154560.a.b ##32	ENSGT00940000154560.a.a.a #33	ENSGT00940000153378.b.b #36	ENSGT00730000111801 #37
Mus	ANCESTRAL SPECIES	11	ENSGT00940000159045 #8	ENSGT00680000100508 #9	ENSGT00940000162855.a.b	ENSGT00940000160430 #10	ENSGT00940000155594 #11	ENSGT00940000154025.a #12	ENSGT00390000010763 #13	ENSGT00940000159342 #14	ENSGT00940000159758 #15	ENSGT00940000154427.B	ENSGT00940000164153 #17	ENSGT00940000163183 #18	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a.t #22	ENSGT00940000153456.a #23	ENSGT00940000162472 #24	ENSGT00950000183140.a.a.m.a.b #25	ENSGT00940000161068 #26	ENSGT00940000162747 #27	ENSGT00940000153837.a.a #28	ENSGT00940000162943 #29	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #30	ENSGT00940000153378.a.a #31	ENSGT00940000154560.b #32	ENSGT00940000154560.a.a.a.a.b #33	ENSGT00940000154560.a.a.a.a.a.a ##32	ENSGT00940000153378.b.b #36	ENSGT00730000111801 #37	ENSGT00940000161506.g
Shrew mouse	MODERN SPECIES	8	Parp10 (MGP_PahariEiJ_G0019924) #7	Plec (MGP_PahariEiJ_G0019923) #8	BC024139 (MGP_PahariEiJ_G0019922) #9	Nrbp2 (MGP_PahariEiJ_G0019921) #10	Puf60 (MGP_PahariEiJ_G0019920) #11	Scrib (MGP_PahariEiJ_G0019919) #12	MGP_PahariEiJ_G0019918 #13	Fam83h (MGP_PahariEiJ_G0019917) #14	Mapk15 (MGP_PahariEiJ_G0019916) #15	Ccdc166 (MGP_PahariEiJ_G0019915) #16	Zfp707 (MGP_PahariEiJ_G0019914) #17	Zfp623 (MGP_PahariEiJ_G0019913) #18	MGP_PahariEiJ_G0019912 #19	Pycrl (MGP_PahariEiJ_G0019911) #20	Tigd5 (MGP_PahariEiJ_G0019910) #21	Eef1d (MGP_PahariEiJ_G0019909) #22	Naprt (MGP_PahariEiJ_G0019908) #23	Mroh6 (MGP_PahariEiJ_G0019907) #24	Gsdmd (MGP_PahariEiJ_G0019906) #25	Zc3h3 (MGP_PahariEiJ_G0019905) #26	Mafa (MGP_PahariEiJ_G0019904) #27	Rhpn1 (MGP_PahariEiJ_G0019903) #28	Top1mt (MGP_PahariEiJ_G0019902) #29	Zfp41 (MGP_PahariEiJ_G0019901) #30	Gpihbp1 (MGP_PahariEiJ_G0019900) #31	Ly6h (MGP_PahariEiJ_G0019899) #32	MGP_PahariEiJ_G0019898 #33	Ly6g (MGP_PahariEiJ_G0019897) #34	MGP_PahariEiJ_G0019896 #35	Ly6e (MGP_PahariEiJ_G0019893) #36	Ly6m (MGP_PahariEiJ_G0019892) #37
Mus_A	ANCESTRAL SPECIES	13	ENSGT00940000159045 #8	ENSGT00680000100508 #9	ENSGT00940000162855.a.b	ENSGT00940000160430 #10	ENSGT00940000155594 #11	ENSGT00940000154025.a #12	ENSGT00390000010763 #13	ENSGT00940000159342 #14	ENSGT00940000159758 #15	ENSGT00940000154427.B	ENSGT00940000164153 #17	ENSGT00940000163183 #18	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a.t #22	ENSGT00940000153456.a #23	ENSGT00940000162472 #24	ENSGT00950000183140.a.a.m.a.b #25	ENSGT00940000161068 #26	ENSGT00940000162747 #27	ENSGT00940000153837.a.a #28	ENSGT00940000162943 #29	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #30	ENSGT00940000153378.a.a #31	ENSGT00940000154560.b #32	ENSGT00940000154560.a.b ##32	ENSGT00940000154560.a.a.a.a.a.a.a.a ##32	ENSGT00940000154560.a.a.a.a.a.b #34	ENSGT00940000154560.a.a.a.b #35	ENSGT00940000153378.b.b #36
Mus_B	ANCESTRAL SPECIES	12	ENSGT00940000159045 #8	ENSGT00680000100508 #9	ENSGT00940000162855.a.b	ENSGT00940000160430 #10	ENSGT00940000155594 #11	ENSGT00940000154025.a #12	ENSGT00390000010763 #13	ENSGT00940000159342 #14	ENSGT00940000159758 #15	ENSGT00940000154427.B	ENSGT00940000164153 #17	ENSGT00940000163183 #18	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a.t #22	ENSGT00940000153456.a #23	ENSGT00940000162472 #24	ENSGT00950000183140.a.a.m.a.b #25	ENSGT00940000161068 #26	ENSGT00940000162747 #27	ENSGT00940000153837.a.a #28	ENSGT00940000162943 #29	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #30	ENSGT00940000153378.a.a #31	ENSGT00940000154560.b #32	ENSGT00940000154560.a.b ##32	ENSGT00940000154560.a.a.a.a.a.a.a.a ##32	ENSGT00940000154560.a.a.a.a.a.b #34	ENSGT00940000154560.a.a.a.b.a #35	ENSGT00940000154560.a.a.a.a.a.a.a.b ##32
Mus_C	ANCESTRAL SPECIES	17	ENSGT00940000162035 #7	ENSGT00940000159045 #8	ENSGT00680000100508 #9	ENSGT00940000160430 #10	ENSGT00940000155594 #11	ENSGT00940000154025.a #12	ENSGT00390000010763 #13	ENSGT00940000159342 #14	ENSGT00940000159758 #15	ENSGT00940000154427.B	ENSGT00940000164153 #17	ENSGT00940000163183 #18	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a.t #22	ENSGT00940000153456.a #23	ENSGT00940000162472 #24	ENSGT00950000183140.a.a.m.a.b #25	ENSGT00940000161068 #26	ENSGT00940000162747 #27	ENSGT00940000153837.a.a #28	ENSGT00940000162943 #29	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #30	ENSGT00940000153378.a.a #31	ENSGT00940000154560.b #32	ENSGT00940000154560.a.b ##32	ENSGT00940000154560.a.a.a.a.a.a.a.a ##32	ENSGT00940000154560.a.a.a.a.a.b #34	ENSGT00940000154560.a.a.a.b.a #35	ENSGT00940000154560.a.a.a.a.a.a.a.b ##32
spretus	MODERN SPECIES	6	Plec (MGP_SPRETEiJ_G0020816) #8	BC024139 (MGP_SPRETEiJ_G0020815) #9	MGP_SPRETEiJ_G0020814	MGP_SPRETEiJ_G0020813 #10	Puf60 (MGP_SPRETEiJ_G0020812) #11	Scrib (MGP_SPRETEiJ_G0020811) #12	MGP_SPRETEiJ_G0020810 #13	Fam83h (MGP_SPRETEiJ_G0020809) #14	Mapk15 (MGP_SPRETEiJ_G0020808) #15	Ccdc166 (MGP_SPRETEiJ_G0020807) #16	Zfp707 (MGP_SPRETEiJ_G0020806) #17	Zfp623 (MGP_SPRETEiJ_G0020805) #18	MGP_SPRETEiJ_G0020804 #19	Pycrl (MGP_SPRETEiJ_G0020803) #20	Tigd5 (MGP_SPRETEiJ_G0020802) #21	Eef1d (MGP_SPRETEiJ_G0020801) #22	Naprt (MGP_SPRETEiJ_G0020800) #23	Mroh6 (MGP_SPRETEiJ_G0020799) #24	Gsdmd (MGP_SPRETEiJ_G0020798) #25	Zc3h3 (MGP_SPRETEiJ_G0020797) #26	Mafa (MGP_SPRETEiJ_G0020796) #27	Rhpn1 (MGP_SPRETEiJ_G0020795) #28	Top1mt (MGP_SPRETEiJ_G0020794) #29	Zfp41 (MGP_SPRETEiJ_G0020793) #30	Gpihbp1 (MGP_SPRETEiJ_G0020792) #31	Ly6h (MGP_SPRETEiJ_G0020791) #32	Ly6l (MGP_SPRETEiJ_G0020790) ##32	MGP_SPRETEiJ_G0020789	Ly6g2 (MGP_SPRETEiJ_G0020788) ##32	MGP_SPRETEiJ_G0020787 #34	MGP_SPRETEiJ_G0020785 #34
Steppe mouse	MODERN SPECIES	2988	Parp10 (ENSMSIG00000023344) #7	Plec (ENSMSIG00000022620) #8	ENSMSIG00000022591	BC024139 (ENSMSIG00000022558) #9	Nrbp2 (ENSMSIG00000022514) #10	Puf60 (ENSMSIG00000022454) #11	ENSMSIG00000021768 #12	Fam83h (ENSMSIG00000021720) #14	Mapk15 (ENSMSIG00000021708) #15	ENSMSIG00000021702	Zfp707 (ENSMSIG00000021670) #17	Zfp623 (ENSMSIG00000021664) #18	ENSMSIG00000021506 #19	Pycrl (ENSMSIG00000021499) #20	Tigd5 (ENSMSIG00000021495) #21	Eef1d (ENSMSIG00000021333) #22	Naprt (ENSMSIG00000021307) #23	Mroh6 (ENSMSIG00000021287) #24	Gsdmd (ENSMSIG00000021268) #25	Zc3h3 (ENSMSIG00000021237) #26	Mafa (ENSMSIG00000021226) #27	Rhpn1 (ENSMSIG00000021180) #28	Top1mt (ENSMSIG00000021154) #29	ENSMSIG00000021147	Zfp41 (ENSMSIG00000021141) #30	Gpihbp1 (ENSMSIG00000021118) #31	Ly6h (ENSMSIG00000021100) #32	Ly6l (ENSMSIG00000021075) ##32
Mouse	MODERN SPECIES	6	Plec (ENSMUSG00000022565) #8	BC024139 (ENSMUSG00000044361) #9	Eppk1 (ENSMUSG00000118671)	Nrbp2 (ENSMUSG00000075590) #10	Puf60 (ENSMUSG00000002524) #11	Scrib (ENSMUSG00000022568) #12	Iqank1 (ENSMUSG00000102018) #13	Fam83h (ENSMUSG00000046761) #14	Mapk15 (ENSMUSG00000063704) #15	Ccdc166 (ENSMUSG00000098176) #16	Zfp707 (ENSMUSG00000034429) #17	Zfp623 (ENSMUSG00000050846) #18	Gfus (ENSMUSG00000022570) #19	Pycrl (ENSMUSG00000022571) #20	Tigd5 (ENSMUSG00000103906) #21	Eef1d (ENSMUSG00000055762) #22	Naprt (ENSMUSG00000022574) #23	Mroh6 (ENSMUSG00000098678) #24	Gsdmd (ENSMUSG00000022575) #25	Zc3h3 (ENSMUSG00000075600) #26	Mafa (ENSMUSG00000047591) #27	Rhpn1 (ENSMUSG00000022580) #28	Top1mt (ENSMUSG00000000934) #29	Zfp41 (ENSMUSG00000047003) #30	Gpihbp1 (ENSMUSG00000022579) #31	Ly6h (ENSMUSG00000022577) #32	Ly6l (ENSMUSG00000093626) ##32	Ly6f (ENSMUSG00000022583) #33	Ly6g2 (ENSMUSG00000047728) ##32	Ly6g (ENSMUSG00000022582) #34	Ly6c2 (ENSMUSG00000022584) #35
Ryukyu mouse	MODERN SPECIES	6	Spatc1 (MGP_CAROLIEiJ_G0019916)	Grina (MGP_CAROLIEiJ_G0019915)	Parp10 (MGP_CAROLIEiJ_G0019914) #7	Plec (MGP_CAROLIEiJ_G0019913) #8	BC024139 (MGP_CAROLIEiJ_G0019912) #9	Nrbp2 (MGP_CAROLIEiJ_G0019911) #10	Puf60 (MGP_CAROLIEiJ_G0019910) #11	Scrib (MGP_CAROLIEiJ_G0019909) #12	MGP_CAROLIEiJ_G0019908 #13	Fam83h (MGP_CAROLIEiJ_G0019907) #14	Mapk15 (MGP_CAROLIEiJ_G0019906) #15	Zfp623 (MGP_CAROLIEiJ_G0019905) #18	MGP_CAROLIEiJ_G0019904 #19	Pycrl (MGP_CAROLIEiJ_G0019903) #20	Tigd5 (MGP_CAROLIEiJ_G0019902) #21	Eef1d (MGP_CAROLIEiJ_G0019901) #22	Naprt (MGP_CAROLIEiJ_G0019900) #23	Mroh6 (MGP_CAROLIEiJ_G0019899) #24	Gsdmd (MGP_CAROLIEiJ_G0019898) #25	Zc3h3 (MGP_CAROLIEiJ_G0019897) #26	Mafa (MGP_CAROLIEiJ_G0019896) #27	Rhpn1 (MGP_CAROLIEiJ_G0019895) #28	Top1mt (MGP_CAROLIEiJ_G0019894) #29	Zfp41 (MGP_CAROLIEiJ_G0019893) #30	Gpihbp1 (MGP_CAROLIEiJ_G0019892) #31	Ly6h (MGP_CAROLIEiJ_G0019891) #32	Ly6g2 (MGP_CAROLIEiJ_G0019890) ##32	MGP_CAROLIEiJ_G0019888 #34	MGP_CAROLIEiJ_G0019887 ##32	Ly6e (MGP_CAROLIEiJ_G0019886) #36	Ly6m (MGP_CAROLIEiJ_G0019885) #37
Rat	MODERN SPECIES	17	Parp10 (ENSRNOG00000004361) #7	Plec (ENSRNOG00000023781) #8	LOC680875 (ENSRNOG00000023828) #9	Eppk1 (ENSRNOG00000068431)	Nrbp2 (ENSRNOG00000029535) #10	Puf60 (ENSRNOG00000009960) #11	Scrib (ENSRNOG00000032574) #12	Iqank1 (ENSRNOG00000063360) #13	Fam83h (ENSRNOG00000030264) #14	Mapk15 (ENSRNOG00000009336) #15	Ccdc166 (ENSRNOG00000047521)	Zfp707l1 (ENSRNOG00000057901) #17	Zfp623 (ENSRNOG00000009302) #18	Gfus (ENSRNOG00000009020) #19	Tigd5 (ENSRNOG00000008686)	Pycr3 (ENSRNOG00000021638) #22	Naprt (ENSRNOG00000007939) #23	Mroh6 (ENSRNOG00000032231) #24	Gsdmd (ENSRNOG00000007728) #25	Zc3h3 (ENSRNOG00000007684) #26	Mafa (ENSRNOG00000007668) #27	Rhpn1 (ENSRNOG00000007597) #28	Top1mt (ENSRNOG00000007500) #29	Gli4 (ENSRNOG00000021765)	Zfp41 (ENSRNOG00000007489) #30	Gpihbp1 (ENSRNOG00000064680) #31	Ly6h (ENSRNOG00000007334) #32	Ly6al (ENSRNOG00000037374) #33	Ly6l (ENSRNOG00000048148) ##32	Ly6i (ENSRNOG00000007137) #33	LOC300024 (ENSRNOG00000048850) #33