Bovidae	ANCESTRAL SPECIES	22	ENSGT00940000162035 #9	ENSGT00940000159045 #10	ENSGT00940000162855.a.b #11	ENSGT00940000160430 #12	ENSGT00940000155594 #13	ENSGT00940000154025.a #14	ENSGT00390000010763	ENSGT00940000159342 #15	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00940000163493.g.a ##26	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472	ENSGT00950000183140.a.a.m.a.b #24	ENSGT00940000161068	ENSGT00940000162747 #25	ENSGT00940000153837.a.a	ENSGT00940000162943	ENSGT00940000163493.h #26	ENSGT00940000163360 #27	ENSGT00940000163493.g.b ##26	ENSGT00940000153378.a.a #28	ENSGT00940000154560.b #29	ENSGT00940000154560.a #30	ENSGT00940000153378.b.b #31	ENSGT00940000161506 #34
Caprinae	ANCESTRAL SPECIES	18	ENSGT01050000244890.a.a.a #8	ENSGT00940000162035 #9	ENSGT00940000159045 #10	ENSGT00940000162855.a.b #11	ENSGT00940000160430 #12	ENSGT00940000155594 #13	ENSGT00940000154025.a #14	ENSGT00390000010763	ENSGT00940000159342 #15	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472	ENSGT00950000183140.a.a.m.a.b #24	ENSGT00940000161068	ENSGT00940000162747 #25	ENSGT00940000153837.a.a	ENSGT00940000163493.h #26	ENSGT00940000163360 #27	ENSGT00940000153378.a.a #28	ENSGT00940000154560.b #29	ENSGT00940000154560.a #30	ENSGT00940000153378.b.b #31	ENSGT00940000161506.u #32	ENSGT00940000159966.A #33	ENSGT00940000161506.v #34
Rambouillet Sheep	MODERN SPECIES	25	SPATC1 (ENSOARG00020005912) #7	GRINA (ENSOARG00020006124) #8	PARP10 (ENSOARG00020006150) #9	PLEC (ENSOARG00020006299) #10	EPPK1 (ENSOARG00020008171) #11	NRBP2 (ENSOARG00020008343) #12	PUF60 (ENSOARG00020009796) #13	SCRIB (ENSOARG00020010125) #14	FAM83H (ENSOARG00020011357) #15	MAPK15 (ENSOARG00020011493) #16	ENSOARG00020011643 #17	ZNF623 (ENSOARG00020011670) #18	GFUS (ENSOARG00020011707) #19	ENSOARG00020011809 #20	TIGD5 (ENSOARG00020011847) #21	EEF1D (ENSOARG00020011880) #22	NAPRT (ENSOARG00020012136) #23	GSDMD (ENSOARG00020012485) #24	MAFA (ENSOARG00020012656) #25	ZNF696 (ENSOARG00020012704) #26	GLI4 (ENSOARG00020012749) #27	GPIHBP1 (ENSOARG00020012887) #28	LY6H (ENSOARG00020012951) #29	LY6L (ENSOARG00020013022) #30	LY6E (ENSOARG00020013083) #31	CYP11B1 (ENSOARG00020013254) #32	GML (ENSOARG00020013648) #33	ENSOARG00020013707 #34	LY6D (ENSOARG00020013889) #35	ENSOARG00020013946 #36	LYPD2 (ENSOARG00020013987) #37
Goat	MODERN SPECIES	5	CYC1 (ENSCHIG00000017517)	GPAA1 (ENSCHIG00000015619)	EXOSC4 (ENSCHIG00000021121)	OPLAH (ENSCHIG00000016629)	ENSCHIG00000022139	SPATC1 (ENSCHIG00000012865) #7	GRINA (ENSCHIG00000002881) #8	PARP10 (ENSCHIG00000008072) #9	PLEC (ENSCHIG00000022260) #10	MAPK15 (ENSCHIG00000022294) #16	ENSCHIG00000026180 #17	ZNF623 (ENSCHIG00000009581) #18	GFUS (ENSCHIG00000008339) #19	PYCR3 (ENSCHIG00000016380) #20	TIGD5 (ENSCHIG00000012655) #21	EEF1D (ENSCHIG00000011578) #22	NAPRT (ENSCHIG00000014486) #23	MROH6 (ENSCHIG00000014989)	GSDMD (ENSCHIG00000010774) #24	ZC3H3 (ENSCHIG00000018027)	MAFA (ENSCHIG00000005605) #25	RHPN1 (ENSCHIG00000024825)	GLI4 (ENSCHIG00000012546) #27	ENSCHIG00000012518	LY6H (ENSCHIG00000016146) #29	ENSCHIG00000011049	LY6E (ENSCHIG00000005488) #31	CYP11B1 (ENSCHIG00000012278) #32	GML (ENSCHIG00000015469) #33	ENSCHIG00000021920 #34	LYNX1 (ENSCHIG00000014052) #36
Bovinae	ANCESTRAL SPECIES	18	ENSGT00940000162035 #9	ENSGT00940000159045 #10	ENSGT00940000162855.a.b #11	ENSGT00940000160430 #12	ENSGT00940000155594 #13	ENSGT00940000154025.a #14	ENSGT00390000010763	ENSGT00940000159342 #15	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00940000163493.g.a ##26	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472	ENSGT00950000183140.a.a.m.a.b #24	ENSGT00940000161068	ENSGT00940000162747 #25	ENSGT00940000153837.a.a	ENSGT00940000162943	ENSGT00940000163493.h #26	ENSGT00940000163360 #27	ENSGT00940000163493.g.b ##26	ENSGT00940000153378.a.a #28	ENSGT00940000154560.b #29	ENSGT00940000154560.a #30	ENSGT00940000153378.b.b #31	ENSGT00940000161506 #34
Bos	ANCESTRAL SPECIES	21	ENSGT00940000162035 #9	ENSGT00940000159045 #10	ENSGT00940000162855.a.b #11	ENSGT00940000160430 #12	ENSGT00940000155594 #13	ENSGT00940000154025.a #14	ENSGT00390000010763	ENSGT00940000159342 #15	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00940000163493.g.a ##26	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472	ENSGT00950000183140.a.a.m.a.b #24	ENSGT00940000161068	ENSGT00940000162747 #25	ENSGT00940000153837.a.a	ENSGT00940000162943	ENSGT00940000163493.h #26	ENSGT00940000163360 #27	ENSGT00940000163493.g.b ##26	ENSGT00940000153378.a.a #28	ENSGT00940000154560.b #29	ENSGT00940000154560.a #30	ENSGT00940000153378.b.b #31	ENSGT00940000161506 #34
Bos_b	ANCESTRAL SPECIES	43	ENSGT00940000162035 #9	ENSGT00940000159045 #10	ENSGT00940000162855.a.b #11	ENSGT00940000160430 #12	ENSGT00940000155594 #13	ENSGT00940000154025.a #14	ENSGT00390000010763	ENSGT00940000159342 #15	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00940000163493.g.a ##26	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472	ENSGT00950000183140.a.a.m.a.b #24	ENSGT00940000161068	ENSGT00940000162747 #25	ENSGT00940000153837.a.a	ENSGT00940000162943	ENSGT00940000163493.h #26	ENSGT00940000163360 #27	ENSGT00940000163493.g.b ##26	ENSGT00940000153378.a.a #28	ENSGT00940000154560.b #29	ENSGT00940000154560.a #30	ENSGT00940000153378.b.b #31	ENSGT00940000161506.x #34
Cow	MODERN SPECIES	5	PARP10 (ENSBTAG00000009677) #9	PLEC (ENSBTAG00000011922) #10	EPPK1 (ENSBTAG00000045727) #11	NRBP2 (ENSBTAG00000008079) #12	PUF60 (ENSBTAG00000037493) #13	SCRIB (ENSBTAG00000008421) #14	IQANK1 (ENSBTAG00000048486)	FAM83H (ENSBTAG00000038682) #15	MAPK15 (ENSBTAG00000019864) #16	CCDC166 (ENSBTAG00000040360) #17	ZNF623 (ENSBTAG00000045791) #18	ENSBTAG00000052472 ##26	GFUS (ENSBTAG00000034691) #19	PYCR3 (ENSBTAG00000016810) #20	TIGD5 (ENSBTAG00000048160) #21	EEF1D (ENSBTAG00000014643) #22	NAPRT (ENSBTAG00000014642) #23	MROH6 (ENSBTAG00000034613)	GSDMD (ENSBTAG00000021474) #24	ZC3H3 (ENSBTAG00000021472)	MAFA (ENSBTAG00000026344) #25	RHPN1 (ENSBTAG00000002104)	TOP1MT (ENSBTAG00000053896)	ZNF696 (ENSBTAG00000049014) #26	GLI4 (ENSBTAG00000003606) #27	GPIHBP1 (ENSBTAG00000049125) #28	LY6H (ENSBTAG00000011939) #29	LY6E (ENSBTAG00000017040) #31	ENSBTAG00000004596 #34	GML (ENSBTAG00000004595) #33	CYP11B1 (ENSBTAG00000054126) #34
Hybrid Bos Indicus	MODERN SPECIES	5	PLEC (ENSBIXG00005006765) #10	ENSBIXG00005029794	ENSBIXG00005029811 #11	ENSBIXG00005029820 #12	ENSBIXG00005029835 #12	PUF60 (ENSBIXG00005029853) #13	SCRIB (ENSBIXG00005029884) #14	FAM83H (ENSBIXG00005029924) #15	ENSBIXG00005029936 #16	ENSBIXG00005029950 #17	ZNF623 (ENSBIXG00005029955) #18	ENSBIXG00005029964 ##26	GFUS (ENSBIXG00005029985) #19	PYCR3 (ENSBIXG00005030011) #20	TIGD5 (ENSBIXG00005030024) #21	ENSBIXG00005030062 #22	NAPRT (ENSBIXG00005030133) #23	MROH6 (ENSBIXG00005030160)	GSDMD (ENSBIXG00005030192) #24	ZC3H3 (ENSBIXG00005030225)	MAFA (ENSBIXG00005030239) #25	RHPN1 (ENSBIXG00005030249)	ENSBIXG00005030263	ENSBIXG00005030272	ZNF696 (ENSBIXG00005030285) #26	GLI4 (ENSBIXG00005030297) #27	ENSBIXG00005030310 ##26	ENSBIXG00005030330 #28	LY6H (ENSBIXG00005030344) #29	LY6L (ENSBIXG00005030354) #30	ENSBIXG00005030371 #34
Bos_a	ANCESTRAL SPECIES	43	ENSGT01050000244890.a.a.a #8	ENSGT00940000162035 #9	ENSGT00940000159045 #10	ENSGT00940000160430 #12	ENSGT00940000155594 #13	ENSGT00940000154025.a #14	ENSGT00390000010763	ENSGT00940000159342 #15	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00940000163493.g.a ##26	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472	ENSGT00950000183140.a.a.m.a.b #24	ENSGT00940000161068	ENSGT00940000162747 #25	ENSGT00940000153837.a.a	ENSGT00940000163493.h #26	ENSGT00940000163360 #27	ENSGT00940000163493.g.b ##26	ENSGT00910000147678	ENSGT00960000190596	ENSGT00940000154560.b #29	ENSGT00940000154560.a #30	ENSGT00940000153378.b.b #31	ENSGT00940000159966.A #33
Wild yak	MODERN SPECIES	168						PUF60 (ENSBMUG00000012511) #13	SCRIB (ENSBMUG00000013981) #14	IQANK1 (ENSBMUG00000015402)	FAM83H (ENSBMUG00000015418) #15	MAPK15 (ENSBMUG00000015448) #16	ENSBMUG00000015473 #17	ZNF623 (ENSBMUG00000015485) #18	ENSBMUG00000015500 ##26	GFUS (ENSBMUG00000015516) #19	ENSBMUG00000015526 #20	EEF1D (ENSBMUG00000015575) #22	NAPRT (ENSBMUG00000015595) #23	GSDMD (ENSBMUG00000015651) #24	ZC3H3 (ENSBMUG00000015678)	RHPN1 (ENSBMUG00000015761)	ZNF696 (ENSBMUG00000015806) #26	ENSBMUG00000015811	ENSBMUG00000015841	LY6H (ENSBMUG00000015851) #29	LY6L (ENSBMUG00000015869) #30	LY6E (ENSBMUG00000015897) #31
Domestic yak	MODERN SPECIES	9	ENSBGRG00000010528	SPATC1 (ENSBGRG00000010414) #7	GRINA (ENSBGRG00000010363) #8	PARP10 (ENSBGRG00000010159) #9	PLEC (ENSBGRG00000007959) #10	ENSBGRG00000007510 #12	ENSBGRG00000007392 #12	PUF60 (ENSBGRG00000007018) #13	FAM83H (ENSBGRG00000005952) #15	MAPK15 (ENSBGRG00000005786) #16	ZNF623 (ENSBGRG00000005671) #18	GFUS (ENSBGRG00000005617) #19	ENSBGRG00000005589 #20	TIGD5 (ENSBGRG00000005583) #21	ENSBGRG00000005570	ENSBGRG00000005433 #22	NAPRT (ENSBGRG00000005281) #23	MROH6 (ENSBGRG00000005185)	GSDMD (ENSBGRG00000005118) #24	ZC3H3 (ENSBGRG00000005085)	MAFA (ENSBGRG00000005073) #25	RHPN1 (ENSBGRG00000005027)	ZNF696 (ENSBGRG00000004992) #26	GLI4 (ENSBGRG00000004935) #27	ENSBGRG00000004913 ##26	ENSBGRG00000004901	LY6H (ENSBGRG00000004864) #29	LY6L (ENSBGRG00000004838) #30	LY6E (ENSBGRG00000004776) #31	GML (ENSBGRG00000004405) #33	ENSBGRG00000004382 ##33
American bison	MODERN SPECIES	1509																ENSBBBG00000000473 #22	ENSBBBG00000023108 #23