Percora_a	ANCESTRAL SPECIES	23	ENSGT00940000162035 #14	ENSGT00940000159045 #15	ENSGT00940000162855.a.b	ENSGT00940000160430	ENSGT00940000155594	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00940000163493.g.a	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472 #24	ENSGT00950000183140.a.a.m.a.b #25	ENSGT00940000161068 #26	ENSGT00940000162747 #27	ENSGT00940000153837.a.a #28	ENSGT00940000162943	ENSGT00940000163493.h	ENSGT00940000163360 #29	ENSGT00940000163493.g.b	ENSGT00940000153378.a.a ##33	ENSGT00940000154560.b #31	ENSGT00940000154560.a ##31	ENSGT00940000153378.b.b #33	ENSGT00940000161506 #34
Bovidae	ANCESTRAL SPECIES	22	ENSGT00940000162035 #14	ENSGT00940000159045 #15	ENSGT00940000162855.a.b	ENSGT00940000160430	ENSGT00940000155594	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00940000163493.g.a	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472 #24	ENSGT00950000183140.a.a.m.a.b #25	ENSGT00940000161068 #26	ENSGT00940000162747 #27	ENSGT00940000153837.a.a #28	ENSGT00940000162943	ENSGT00940000163493.h	ENSGT00940000163360 #29	ENSGT00940000163493.g.b	ENSGT00940000153378.a.a ##33	ENSGT00940000154560.b #31	ENSGT00940000154560.a ##31	ENSGT00940000153378.b.b #33	ENSGT00940000161506 #34
Caprinae	ANCESTRAL SPECIES	18	ENSGT01050000244890.a.a.a #13	ENSGT00940000162035 #14	ENSGT00940000159045 #15	ENSGT00940000162855.a.b	ENSGT00940000160430	ENSGT00940000155594	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472 #24	ENSGT00950000183140.a.a.m.a.b #25	ENSGT00940000161068 #26	ENSGT00940000162747 #27	ENSGT00940000153837.a.a #28	ENSGT00940000163493.h	ENSGT00940000163360 #29	ENSGT00940000153378.a.a ##33	ENSGT00940000154560.b #31	ENSGT00940000154560.a ##31	ENSGT00940000153378.b.b #33	ENSGT00940000161506.u #34	ENSGT00940000159966.A #35	ENSGT00940000161506.v #36
Goat	MODERN SPECIES	5	CYC1 (ENSCHIG00000017517) #7	GPAA1 (ENSCHIG00000015619) #8	EXOSC4 (ENSCHIG00000021121) #9	OPLAH (ENSCHIG00000016629) #10	ENSCHIG00000022139 #11	SPATC1 (ENSCHIG00000012865) #12	GRINA (ENSCHIG00000002881) #13	PARP10 (ENSCHIG00000008072) #14	PLEC (ENSCHIG00000022260) #15	MAPK15 (ENSCHIG00000022294) #16	ENSCHIG00000026180 #17	ZNF623 (ENSCHIG00000009581) #18	GFUS (ENSCHIG00000008339) #19	PYCR3 (ENSCHIG00000016380) #20	TIGD5 (ENSCHIG00000012655) #21	EEF1D (ENSCHIG00000011578) #22	NAPRT (ENSCHIG00000014486) #23	MROH6 (ENSCHIG00000014989) #24	GSDMD (ENSCHIG00000010774) #25	ZC3H3 (ENSCHIG00000018027) #26	MAFA (ENSCHIG00000005605) #27	RHPN1 (ENSCHIG00000024825) #28	GLI4 (ENSCHIG00000012546) #29	ENSCHIG00000012518 #30	LY6H (ENSCHIG00000016146) #31	ENSCHIG00000011049 #32	LY6E (ENSCHIG00000005488) #33	CYP11B1 (ENSCHIG00000012278) #34	GML (ENSCHIG00000015469) #35	ENSCHIG00000021920 #36	LYNX1 (ENSCHIG00000014052) #37
Rambouillet Sheep	MODERN SPECIES	25	SPATC1 (ENSOARG00020005912) #12	GRINA (ENSOARG00020006124) #13	PARP10 (ENSOARG00020006150) #14	PLEC (ENSOARG00020006299) #15	EPPK1 (ENSOARG00020008171)	NRBP2 (ENSOARG00020008343)	PUF60 (ENSOARG00020009796)	SCRIB (ENSOARG00020010125)	FAM83H (ENSOARG00020011357)	MAPK15 (ENSOARG00020011493) #16	ENSOARG00020011643 #17	ZNF623 (ENSOARG00020011670) #18	GFUS (ENSOARG00020011707) #19	ENSOARG00020011809 #20	TIGD5 (ENSOARG00020011847) #21	EEF1D (ENSOARG00020011880) #22	NAPRT (ENSOARG00020012136) #23	GSDMD (ENSOARG00020012485) #25	MAFA (ENSOARG00020012656) #27	ZNF696 (ENSOARG00020012704)	GLI4 (ENSOARG00020012749) #29	GPIHBP1 (ENSOARG00020012887) ##33	LY6H (ENSOARG00020012951) #31	LY6L (ENSOARG00020013022) ##31	LY6E (ENSOARG00020013083) #33	CYP11B1 (ENSOARG00020013254) #34	GML (ENSOARG00020013648) #35	ENSOARG00020013707 #36	LY6D (ENSOARG00020013889)	ENSOARG00020013946 #37	LYPD2 (ENSOARG00020013987)
Bovinae	ANCESTRAL SPECIES	18	ENSGT00940000162035 #14	ENSGT00940000159045 #15	ENSGT00940000162855.a.b	ENSGT00940000160430	ENSGT00940000155594	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00940000163493.g.a	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472 #24	ENSGT00950000183140.a.a.m.a.b #25	ENSGT00940000161068 #26	ENSGT00940000162747 #27	ENSGT00940000153837.a.a #28	ENSGT00940000162943	ENSGT00940000163493.h	ENSGT00940000163360 #29	ENSGT00940000163493.g.b	ENSGT00940000153378.a.a ##33	ENSGT00940000154560.b #31	ENSGT00940000154560.a ##31	ENSGT00940000153378.b.b #33	ENSGT00940000161506 #34
Bos	ANCESTRAL SPECIES	21	ENSGT00940000162035 #14	ENSGT00940000159045 #15	ENSGT00940000162855.a.b	ENSGT00940000160430	ENSGT00940000155594	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00940000163493.g.a	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472 #24	ENSGT00950000183140.a.a.m.a.b #25	ENSGT00940000161068 #26	ENSGT00940000162747 #27	ENSGT00940000153837.a.a #28	ENSGT00940000162943	ENSGT00940000163493.h	ENSGT00940000163360 #29	ENSGT00940000163493.g.b	ENSGT00940000153378.a.a ##33	ENSGT00940000154560.b #31	ENSGT00940000154560.a ##31	ENSGT00940000153378.b.b #33	ENSGT00940000161506 #34
Bos_b	ANCESTRAL SPECIES	43	ENSGT00940000162035 #14	ENSGT00940000159045 #15	ENSGT00940000162855.a.b	ENSGT00940000160430	ENSGT00940000155594	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00940000163493.g.a	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472 #24	ENSGT00950000183140.a.a.m.a.b #25	ENSGT00940000161068 #26	ENSGT00940000162747 #27	ENSGT00940000153837.a.a #28	ENSGT00940000162943	ENSGT00940000163493.h	ENSGT00940000163360 #29	ENSGT00940000163493.g.b	ENSGT00940000153378.a.a ##33	ENSGT00940000154560.b #31	ENSGT00940000154560.a ##31	ENSGT00940000153378.b.b #33	ENSGT00940000161506.x #34
Cow	MODERN SPECIES	5	PARP10 (ENSBTAG00000009677) #14	PLEC (ENSBTAG00000011922) #15	EPPK1 (ENSBTAG00000045727)	NRBP2 (ENSBTAG00000008079)	PUF60 (ENSBTAG00000037493)	SCRIB (ENSBTAG00000008421)	IQANK1 (ENSBTAG00000048486)	FAM83H (ENSBTAG00000038682)	MAPK15 (ENSBTAG00000019864) #16	CCDC166 (ENSBTAG00000040360) #17	ZNF623 (ENSBTAG00000045791) #18	ENSBTAG00000052472	GFUS (ENSBTAG00000034691) #19	PYCR3 (ENSBTAG00000016810) #20	TIGD5 (ENSBTAG00000048160) #21	EEF1D (ENSBTAG00000014643) #22	NAPRT (ENSBTAG00000014642) #23	MROH6 (ENSBTAG00000034613) #24	GSDMD (ENSBTAG00000021474) #25	ZC3H3 (ENSBTAG00000021472) #26	MAFA (ENSBTAG00000026344) #27	RHPN1 (ENSBTAG00000002104) #28	TOP1MT (ENSBTAG00000053896)	ZNF696 (ENSBTAG00000049014)	GLI4 (ENSBTAG00000003606) #29	GPIHBP1 (ENSBTAG00000049125) ##33	LY6H (ENSBTAG00000011939) #31	LY6E (ENSBTAG00000017040) #33	ENSBTAG00000004596 #34	GML (ENSBTAG00000004595) #35	CYP11B1 (ENSBTAG00000054126) #34
Hybrid Bos Indicus	MODERN SPECIES	5	PLEC (ENSBIXG00005006765) #15	ENSBIXG00005029794	ENSBIXG00005029811	ENSBIXG00005029820	ENSBIXG00005029835	PUF60 (ENSBIXG00005029853)	SCRIB (ENSBIXG00005029884)	FAM83H (ENSBIXG00005029924)	ENSBIXG00005029936 #16	ENSBIXG00005029950 #17	ZNF623 (ENSBIXG00005029955) #18	ENSBIXG00005029964	GFUS (ENSBIXG00005029985) #19	PYCR3 (ENSBIXG00005030011) #20	TIGD5 (ENSBIXG00005030024) #21	ENSBIXG00005030062 #22	NAPRT (ENSBIXG00005030133) #23	MROH6 (ENSBIXG00005030160) #24	GSDMD (ENSBIXG00005030192) #25	ZC3H3 (ENSBIXG00005030225) #26	MAFA (ENSBIXG00005030239) #27	RHPN1 (ENSBIXG00005030249) #28	ENSBIXG00005030263	ENSBIXG00005030272	ZNF696 (ENSBIXG00005030285)	GLI4 (ENSBIXG00005030297) #29	ENSBIXG00005030310	ENSBIXG00005030330 ##33	LY6H (ENSBIXG00005030344) #31	LY6L (ENSBIXG00005030354) ##31	ENSBIXG00005030371 #34
Bos_a	ANCESTRAL SPECIES	43	ENSGT01050000244890.a.a.a #13	ENSGT00940000162035 #14	ENSGT00940000159045 #15	ENSGT00940000160430	ENSGT00940000155594	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342	ENSGT00940000159758 #16	ENSGT00940000154427.B #17	ENSGT00940000163183 #18	ENSGT00940000163493.g.a	ENSGT00390000004681 #19	ENSGT00950000183044.a.b #20	ENSGT00940000154420.C.i #21	ENSGT00950000183014.f.b.a.a #22	ENSGT00940000153456.a #23	ENSGT00940000162472 #24	ENSGT00950000183140.a.a.m.a.b #25	ENSGT00940000161068 #26	ENSGT00940000162747 #27	ENSGT00940000153837.a.a #28	ENSGT00940000163493.h	ENSGT00940000163360 #29	ENSGT00940000163493.g.b	ENSGT00910000147678	ENSGT00960000190596 #30	ENSGT00940000154560.b #31	ENSGT00940000154560.a ##31	ENSGT00940000153378.b.b #33	ENSGT00940000159966.A #35
Wild yak	MODERN SPECIES	168						PUF60 (ENSBMUG00000012511)	SCRIB (ENSBMUG00000013981)	IQANK1 (ENSBMUG00000015402)	FAM83H (ENSBMUG00000015418)	MAPK15 (ENSBMUG00000015448) #16	ENSBMUG00000015473 #17	ZNF623 (ENSBMUG00000015485) #18	ENSBMUG00000015500	GFUS (ENSBMUG00000015516) #19	ENSBMUG00000015526 #20	EEF1D (ENSBMUG00000015575) #22	NAPRT (ENSBMUG00000015595) #23	GSDMD (ENSBMUG00000015651) #25	ZC3H3 (ENSBMUG00000015678) #26	RHPN1 (ENSBMUG00000015761) #28	ZNF696 (ENSBMUG00000015806)	ENSBMUG00000015811	ENSBMUG00000015841 #30	LY6H (ENSBMUG00000015851) #31	LY6L (ENSBMUG00000015869) ##31	LY6E (ENSBMUG00000015897) #33
Domestic yak	MODERN SPECIES	9	ENSBGRG00000010528 #11	SPATC1 (ENSBGRG00000010414) #12	GRINA (ENSBGRG00000010363) #13	PARP10 (ENSBGRG00000010159) #14	PLEC (ENSBGRG00000007959) #15	ENSBGRG00000007510	ENSBGRG00000007392	PUF60 (ENSBGRG00000007018)	FAM83H (ENSBGRG00000005952)	MAPK15 (ENSBGRG00000005786) #16	ZNF623 (ENSBGRG00000005671) #18	GFUS (ENSBGRG00000005617) #19	ENSBGRG00000005589 #20	TIGD5 (ENSBGRG00000005583) #21	ENSBGRG00000005570	ENSBGRG00000005433 #22	NAPRT (ENSBGRG00000005281) #23	MROH6 (ENSBGRG00000005185) #24	GSDMD (ENSBGRG00000005118) #25	ZC3H3 (ENSBGRG00000005085) #26	MAFA (ENSBGRG00000005073) #27	RHPN1 (ENSBGRG00000005027) #28	ZNF696 (ENSBGRG00000004992)	GLI4 (ENSBGRG00000004935) #29	ENSBGRG00000004913	ENSBGRG00000004901 #30	LY6H (ENSBGRG00000004864) #31	LY6L (ENSBGRG00000004838) ##31	LY6E (ENSBGRG00000004776) #33	GML (ENSBGRG00000004405) #35	ENSBGRG00000004382 ##35
American bison	MODERN SPECIES	1509																ENSBBBG00000000473 #22	ENSBBBG00000023108 #23
Siberian musk deer	MODERN SPECIES	1204	OPLAH (ENSMMSG00000020069) #10	ENSMMSG00000020029 #11	SPATC1 (ENSMMSG00000019996) #12	GRINA (ENSMMSG00000019971) #13	PARP10 (ENSMMSG00000019945) #14	NRBP2 (ENSMMSG00000019766)	PUF60 (ENSMMSG00000019612)	SCRIB (ENSMMSG00000019258)	FAM83H (ENSMMSG00000019157)	MAPK15 (ENSMMSG00000019099) #16	ENSMMSG00000019073 #17	ZNF623 (ENSMMSG00000019059) #18	GFUS (ENSMMSG00000019014) #19	PYCR3 (ENSMMSG00000018935) #20	TIGD5 (ENSMMSG00000018919) #21	ENSMMSG00000018709 #22	NAPRT (ENSMMSG00000018644) #23	MROH6 (ENSMMSG00000018575) #24	GSDMD (ENSMMSG00000018522) #25	ZC3H3 (ENSMMSG00000018484) #26	MAFA (ENSMMSG00000018472) #27	RHPN1 (ENSMMSG00000018400) #28	ENSMMSG00000018346	ZNF696 (ENSMMSG00000018336)	GLI4 (ENSMMSG00000018300) #29	ENSMMSG00000018257 ##33	LY6H (ENSMMSG00000018217) #31	LY6L (ENSMMSG00000014617) ##31	LY6E (ENSMMSG00000014580) #33	GML (ENSMMSG00000014555) #35	ENSMMSG00000014506