Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT01040000242059	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT01050000244890.a.b.a #32	ENSGT00940000158887 #31	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT01050000244848.A.a.h ##37
Glires	ANCESTRAL SPECIES	14	ENSGT01040000242059	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT01050000244890.a.b.a #32	ENSGT00940000158887 #31	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b
Rodentia	ANCESTRAL SPECIES	14	ENSGT01040000242059	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT01050000244890.a.b.a #32	ENSGT00940000158887 #31	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00940000163074 #22
Sciuridae	ANCESTRAL SPECIES																	ENSGT00940000163074 #22
Marmotini	ANCESTRAL SPECIES	2	ENSGT00950000182953.A #8	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00910000148620.e #29	ENSGT00940000154101.a #30	ENSGT00940000158887 #31	ENSGT01050000244890.a.b.a #32	ENSGT00530000065055 #33	ENSGT00940000153648.a.e #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37
Alpin marmot	MODERN SPECIES	8	CNPPD1 (ENSMMMG00000019961) #7	SLC23A3 (ENSMMMG00000019955) #8	NHEJ1 (ENSMMMG00000019945) #9	IHH (ENSMMMG00000019944) #10	CFAP65 (ENSMMMG00000019864) #11	CRYBA2 (ENSMMMG00000019854) #12	FEV (ENSMMMG00000019852) #13	WNT10A (ENSMMMG00000019849) #14	WNT6 (ENSMMMG00000019844) #15	PRKAG3 (ENSMMMG00000019814) #16	CYP27A1 (ENSMMMG00000019807) #17	TTLL4 (ENSMMMG00000019755) #18	STK36 (ENSMMMG00000019701) #19	RNF25 (ENSMMMG00000019685) #20	BCS1L (ENSMMMG00000019672) #21	ZNF142 (ENSMMMG00000019653) #22	PLCD4 (ENSMMMG00000019618) #23	CNOT9 (ENSMMMG00000019612) #24	USP37 (ENSMMMG00000019560) #25	VIL1 (ENSMMMG00000019546) #26	CTDSP1 (ENSMMMG00000019536) #27	SLC11A1 (ENSMMMG00000018412) #28	ENSMMMG00000018388 #29	CATIP (ENSMMMG00000018380) #30	PNKD (ENSMMMG00000018279) #31	TMBIM1 (ENSMMMG00000018243) #32	ENSMMMG00000018234 #33	ENSMMMG00000018213 #34	GPBAR1 (ENSMMMG00000018212) #35	ARPC2 (ENSMMMG00000018188) #36	CXCR1 (ENSMMMG00000018180) #37
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00930000151420	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT01050000244890.a.b.a #32	ENSGT00940000158887 #31	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00930000151420	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT01050000244890.a.b.a #32	ENSGT00940000158887 #31	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b
Muroidea	ANCESTRAL SPECIES	20	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00930000151420	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT01050000244890.a.b.a #32	ENSGT00940000158887 #31	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00930000151420	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT01050000244890.a.b.a #32	ENSGT00940000158887 #31	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b
Murinae	ANCESTRAL SPECIES	9	ENSGT00950000182953.A #8	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT01050000244890.a.b.a #32	ENSGT00940000158887 #31	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b
Mus	ANCESTRAL SPECIES	5	ENSGT00950000182953.A #8	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT01050000244890.a.b.a #32	ENSGT00940000158887 #31	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b
Mus_A	ANCESTRAL SPECIES	5	ENSGT00950000182953.A #8	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT01050000244890.a.b.a #32	ENSGT00940000158887 #31	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b
Mus_B	ANCESTRAL SPECIES	7	ENSGT00950000182953.A #8	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT00940000158887 #31	ENSGT01050000244890.a.b.a #32	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b
Mus_C	ANCESTRAL SPECIES	1	ENSGT00950000182953.A #8	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT00940000158887 #31	ENSGT01050000244890.a.b.a #32	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b
Steppe mouse	MODERN SPECIES	3423	Slc23a3 (ENSMSIG00000018400) #8	Nhej1 (ENSMSIG00000018428) #9	Ihh (ENSMSIG00000018493) #10	Cfap65 (ENSMSIG00000018515) #11	Cryba2 (ENSMSIG00000018560) #12	Fev (ENSMSIG00000018578) #13	Cdk5r2 (ENSMSIG00000018589)	Wnt10a (ENSMSIG00000018596) #14	Wnt6 (ENSMSIG00000018613) #15	Cyp27a1 (ENSMSIG00000018644) #17	Prkag3 (ENSMSIG00000018678) #16	Ttll4 (ENSMSIG00000018759) #18	Stk36 (ENSMSIG00000018889) #19	Rnf25 (ENSMSIG00000019133) #20	Bcs1l (ENSMSIG00000019168) #21	Zfp142 (ENSMSIG00000019187) #22	Plcd4 (ENSMSIG00000019245) #23	Usp37 (ENSMSIG00000019436) #25	Cnot9 (ENSMSIG00000019555) #24	Vil1 (ENSMSIG00000019586) #26	ENSMSIG00000019634 #27	Slc11a1 (ENSMSIG00000019682) #28	Catip (ENSMSIG00000019768) #30	Pnkd (ENSMSIG00000019825) #31	ENSMSIG00000019882	ENSMSIG00000019883 #32	Aamp (ENSMSIG00000019900) #34	Gpbar1 (ENSMSIG00000019937) #35	Arpc2 (ENSMSIG00000019942) #36	Cxcr1 (ENSMSIG00000019993) #37	Cxcr2 (ENSMSIG00000020001) ##37
spretus	MODERN SPECIES		Slc23a3 (MGP_SPRETEiJ_G0015088) #8	MGP_SPRETEiJ_G0015087 #9	Ihh (MGP_SPRETEiJ_G0015086) #10	Cfap65 (MGP_SPRETEiJ_G0015085) #11	Cryba2 (MGP_SPRETEiJ_G0015084) #12	Fev (MGP_SPRETEiJ_G0015083) #13	Cdk5r2 (MGP_SPRETEiJ_G0015082)	Wnt10a (MGP_SPRETEiJ_G0015081) #14	Wnt6 (MGP_SPRETEiJ_G0015080) #15	Prkag3 (MGP_SPRETEiJ_G0015079) #16	Cyp27a1 (MGP_SPRETEiJ_G0015078) #17	Ttll4 (MGP_SPRETEiJ_G0015077) #18	Stk36 (MGP_SPRETEiJ_G0015076) #19	Rnf25 (MGP_SPRETEiJ_G0015075) #20	Bcs1l (MGP_SPRETEiJ_G0015074) #21	Zfp142 (MGP_SPRETEiJ_G0015073) #22	Plcd4 (MGP_SPRETEiJ_G0015072) #23	Cnot9 (MGP_SPRETEiJ_G0015071) #24	Usp37 (MGP_SPRETEiJ_G0015070) #25	Vil1 (MGP_SPRETEiJ_G0015069) #26	Ctdsp1 (MGP_SPRETEiJ_G0015068) #27	Slc11a1 (MGP_SPRETEiJ_G0015067) #28	Catip (MGP_SPRETEiJ_G0015066) #30	Tmbim1 (MGP_SPRETEiJ_G0015065) #32	Pnkd (MGP_SPRETEiJ_G0015064) #31	Aamp (MGP_SPRETEiJ_G0015063) #34	Gpbar1 (MGP_SPRETEiJ_G0015062) #35	Arpc2 (MGP_SPRETEiJ_G0015061) #36	MGP_SPRETEiJ_G0015060	Cxcr2 (MGP_SPRETEiJ_G0015059) ##37	Rufy4 (MGP_SPRETEiJ_G0015058)
Mouse	MODERN SPECIES		Slc23a3 (ENSMUSG00000026205) #8	Nhej1 (ENSMUSG00000026162) #9	Ihh (ENSMUSG00000006538) #10	Cfap65 (ENSMUSG00000047021) #11	Cryba2 (ENSMUSG00000006546) #12	Fev (ENSMUSG00000055197) #13	Cdk5r2 (ENSMUSG00000090071)	Wnt10a (ENSMUSG00000026167) #14	Wnt6 (ENSMUSG00000033227) #15	Prkag3 (ENSMUSG00000006542) #16	Cyp27a1 (ENSMUSG00000026170) #17	Ttll4 (ENSMUSG00000033257) #18	Stk36 (ENSMUSG00000033276) #19	Rnf25 (ENSMUSG00000026171) #20	Bcs1l (ENSMUSG00000026172) #21	Zfp142 (ENSMUSG00000026135) #22	Plcd4 (ENSMUSG00000026173) #23	Cnot9 (ENSMUSG00000026174) #24	Usp37 (ENSMUSG00000033364) #25	Vil1 (ENSMUSG00000026175) #26	Ctdsp1 (ENSMUSG00000026176) #27	Slc11a1 (ENSMUSG00000026177) #28	Catip (ENSMUSG00000073650) #30	Tmbim1 (ENSMUSG00000006301) #32	Pnkd (ENSMUSG00000026179) #31	Aamp (ENSMUSG00000006299) #34	Gpbar1 (ENSMUSG00000064272) #35	Arpc2 (ENSMUSG00000006304) #36	Cxcr1 (ENSMUSG00000048480) #37	Cxcr2 (ENSMUSG00000026180) ##37	Rufy4 (ENSMUSG00000061815)
Ryukyu mouse	MODERN SPECIES		Slc23a3 (MGP_CAROLIEiJ_G0014282) #8	MGP_CAROLIEiJ_G0014281 #9	Ihh (MGP_CAROLIEiJ_G0014280) #10	Cfap65 (MGP_CAROLIEiJ_G0014279) #11	Cryba2 (MGP_CAROLIEiJ_G0014278) #12	Fev (MGP_CAROLIEiJ_G0014277) #13	Cdk5r2 (MGP_CAROLIEiJ_G0014276)	Wnt10a (MGP_CAROLIEiJ_G0014275) #14	Wnt6 (MGP_CAROLIEiJ_G0014274) #15	Prkag3 (MGP_CAROLIEiJ_G0014273) #16	Cyp27a1 (MGP_CAROLIEiJ_G0014272) #17	Ttll4 (MGP_CAROLIEiJ_G0014271) #18	Stk36 (MGP_CAROLIEiJ_G0014270) #19	Rnf25 (MGP_CAROLIEiJ_G0014269) #20	Bcs1l (MGP_CAROLIEiJ_G0014268) #21	Zfp142 (MGP_CAROLIEiJ_G0014267) #22	Plcd4 (MGP_CAROLIEiJ_G0014266) #23	Cnot9 (MGP_CAROLIEiJ_G0014265) #24	Usp37 (MGP_CAROLIEiJ_G0014264) #25	Vil1 (MGP_CAROLIEiJ_G0014263) #26	Ctdsp1 (MGP_CAROLIEiJ_G0014262) #27	Slc11a1 (MGP_CAROLIEiJ_G0014261) #28	Catip (MGP_CAROLIEiJ_G0014260) #30	Tmbim1 (MGP_CAROLIEiJ_G0014259) #32	Pnkd (MGP_CAROLIEiJ_G0014258) #31	Aamp (MGP_CAROLIEiJ_G0014257) #34	Gpbar1 (MGP_CAROLIEiJ_G0014256) #35	Arpc2 (MGP_CAROLIEiJ_G0014255) #36	Cxcr1 (MGP_CAROLIEiJ_G0014254) #37	Cxcr2 (MGP_CAROLIEiJ_G0014253) ##37	Rufy4 (MGP_CAROLIEiJ_G0014252)
Shrew mouse	MODERN SPECIES	18	Slc23a3 (MGP_PahariEiJ_G0027520) #8	MGP_PahariEiJ_G0027519 #9	Ihh (MGP_PahariEiJ_G0027518) #10	Cfap65 (MGP_PahariEiJ_G0027517) #11	Cryba2 (MGP_PahariEiJ_G0027516) #12	Fev (MGP_PahariEiJ_G0027515) #13	Cdk5r2 (MGP_PahariEiJ_G0027514)	Wnt10a (MGP_PahariEiJ_G0027513) #14	Wnt6 (MGP_PahariEiJ_G0027512) #15	Prkag3 (MGP_PahariEiJ_G0027511) #16	Cyp27a1 (MGP_PahariEiJ_G0027510) #17	Ttll4 (MGP_PahariEiJ_G0027509) #18	Stk36 (MGP_PahariEiJ_G0027508) #19	Rnf25 (MGP_PahariEiJ_G0027507) #20	Bcs1l (MGP_PahariEiJ_G0027506) #21	Zfp142 (MGP_PahariEiJ_G0027505) #22	Plcd4 (MGP_PahariEiJ_G0027504) #23	Cnot9 (MGP_PahariEiJ_G0027503) #24	Usp37 (MGP_PahariEiJ_G0027502) #25	Vil1 (MGP_PahariEiJ_G0027501) #26	Ctdsp1 (MGP_PahariEiJ_G0027500) #27	Slc11a1 (MGP_PahariEiJ_G0027499) #28	MGP_PahariEiJ_G0027498 #30	Tmbim1 (MGP_PahariEiJ_G0027497) #32	Pnkd (MGP_PahariEiJ_G0027496) #31	Aamp (MGP_PahariEiJ_G0027495) #34	Gpbar1 (MGP_PahariEiJ_G0027494) #35	Arpc2 (MGP_PahariEiJ_G0027493) #36	Cxcr1 (MGP_PahariEiJ_G0027492) #37	Cxcr2 (MGP_PahariEiJ_G0027491) ##37	Rufy4 (MGP_PahariEiJ_G0027490)
Rat	MODERN SPECIES	19	Ihh (ENSRNOG00000018059) #10	Cfap65 (ENSRNOG00000056996) #11	Cryba2 (ENSRNOG00000017996) #12	Fev (ENSRNOG00000017856) #13	Cdk5r2 (ENSRNOG00000037793)	AC132020.1 (ENSRNOG00000017757)	Wnt10a (ENSRNOG00000052510) #14	Wnt6 (ENSRNOG00000017409) #15	ENSRNOG00000067128	Prkag3 (ENSRNOG00000017248) #16	Cyp27a1 (ENSRNOG00000017188) #17	Ttll4 (ENSRNOG00000017129) #18	Stk36 (ENSRNOG00000016913) #19	Rnf25 (ENSRNOG00000016886) #20	Bcs1l (ENSRNOG00000016754) #21	Zfp142 (ENSRNOG00000022414) #22	Plcd4 (ENSRNOG00000016361) #23	Cnot9 (ENSRNOG00000016034) #24	Usp37 (ENSRNOG00000022720) #25	Vil1 (ENSRNOG00000015408) #26	Ctdsp1 (ENSRNOG00000015295) #27	Slc11a1 (ENSRNOG00000014956) #28	Catip (ENSRNOG00000037835) #30	Tmbim1 (ENSRNOG00000014797) #32	ENSRNOG00000062745	Pnkd (ENSRNOG00000014806) #31	Aamp (ENSRNOG00000014399) #34	Gpbar1 (ENSRNOG00000058260) #35	Arpc2 (ENSRNOG00000014289) #36	Cxcr1 (ENSRNOG00000048239) #37	Cxcr2 (ENSRNOG00000063618) ##37
Cricetidae	ANCESTRAL SPECIES																	ENSGT00940000163074 #22
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00390000008812.a	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00930000151420	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT01040000240451.a.a #27	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT00940000158887 #31	ENSGT01050000244890.a.b.a.a #32	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b
Northern American deer mouse	MODERN SPECIES	4	ENSPEMG00000030620	ENSPEMG00000013096 #9	Ihh (ENSPEMG00000029231) #10	Cfap65 (ENSPEMG00000000225) #11	Cryba2 (ENSPEMG00000012049) #12	Fev (ENSPEMG00000030849) #13	ENSPEMG00000026703	Wnt10a (ENSPEMG00000026915) #14	Wnt6 (ENSPEMG00000013371) #15	Prkag3 (ENSPEMG00000015508) #16	Cyp27a1 (ENSPEMG00000016775) #17	Ttll4 (ENSPEMG00000015183) #18	Stk36 (ENSPEMG00000025017) #19	Rnf25 (ENSPEMG00000013432) #20	Bcs1l (ENSPEMG00000009977) #21	Zfp142 (ENSPEMG00000000784) #22	Plcd4 (ENSPEMG00000016923) #23	Cnot9 (ENSPEMG00000014045) #24	Usp37 (ENSPEMG00000002989) #25	Vil1 (ENSPEMG00000012484) #26	Ctdsp1 (ENSPEMG00000025369) #27	Slc11a1 (ENSPEMG00000000568) #28	ENSPEMG00000031268	Pnkd (ENSPEMG00000010689) #31	Tmbim1 (ENSPEMG00000009661) #32	Aamp (ENSPEMG00000013785) #34	Gpbar1 (ENSPEMG00000007092) #35	Arpc2 (ENSPEMG00000013064) #36	Cxcr1 (ENSPEMG00000014090) #37	ENSPEMG00000024826	ENSPEMG00000014345
Lesser Egyptian jerboa	MODERN SPECIES	95	Slc23a3 (ENSJJAG00000014948) #8	ENSJJAG00000021485 #9	Ihh (ENSJJAG00000005159) #10	Cfap65 (ENSJJAG00000021817) #11	Cryba2 (ENSJJAG00000012188) #12	Fev (ENSJJAG00000014165) #13	ENSJJAG00000018657	Wnt10a (ENSJJAG00000019142) #14	Wnt6 (ENSJJAG00000020656) #15	Cyp27a1 (ENSJJAG00000016498) #17	Ttll4 (ENSJJAG00000022044) #18	ENSJJAG00000022770	ENSJJAG00000011828 #19	ENSJJAG00000015098 #20	Bcs1l (ENSJJAG00000015901) #21	Zfp142 (ENSJJAG00000021558) #22	Plcd4 (ENSJJAG00000015778) #23	ENSJJAG00000001130 #24	Usp37 (ENSJJAG00000012891) #25	Vil1 (ENSJJAG00000017015) #26	Slc11a1 (ENSJJAG00000018654) #28	ENSJJAG00000000751 #30	Pnkd (ENSJJAG00000023559) #31	Gpbar1 (ENSJJAG00000000711) #35	ENSJJAG00000018352 #36	Cxcr2 (ENSJJAG00000002215) ##37	Tns1 (ENSJJAG00000016129)	Tnp1 (ENSJJAG00000015724)	Igfbp5 (ENSJJAG00000017561)	Igfbp2 (ENSJJAG00000022294)	Smarcal1 (ENSJJAG00000016407)
Lagomorpha	ANCESTRAL SPECIES	13	ENSGT00390000000862 #7	ENSGT00390000009940 #9	ENSGT00940000159207 #10	ENSGT00430000031142 #11	ENSGT00940000160306 #12	ENSGT00940000161562 #13	ENSGT00940000160299 #14	ENSGT00940000159281 #15	ENSGT00950000183019.f.b.b #16	ENSGT00950000182905.a.a.a.a.b #17	ENSGT00940000157916 #18	ENSGT00940000158375 #19	ENSGT00390000001557 #20	ENSGT00390000005415.b #21	ENSGT00940000163279	ENSGT00940000163074 #22	ENSGT00940000156180 #23	ENSGT00390000001225 #24	ENSGT00940000158091 #25	ENSGT00940000160544 #26	ENSGT00940000160799 #28	ENSGT00940000154101.a #30	ENSGT01050000244890.a.b.a #32	ENSGT00940000158887 #31	ENSGT00940000153648.a #34	ENSGT00390000010256 #35	ENSGT00390000016794.b #36	ENSGT01050000244848.A.a.g.b #37	ENSGT01050000244848.A.a.g.a ##37	ENSGT00940000154044.a.b	ENSGT00940000155400.B
Pika	MODERN SPECIES	2762													TTLL4 (ENSOPRG00000006068) #18	STK36 (ENSOPRG00000006039) #19	RNF25 (ENSOPRG00000006026) #20	ZNF142 (ENSOPRG00000005998) #22	PLCD4 (ENSOPRG00000005972) #23	CNOT9 (ENSOPRG00000005958) #24	USP37 (ENSOPRG00000005934) #25	VIL1 (ENSOPRG00000005918) #26	SLC11A1 (ENSOPRG00000005901) #28	ENSOPRG00000005879 #30	TMBIM1 (ENSOPRG00000005851) #32	ENSOPRG00000018377	PNKD (ENSOPRG00000005828) #31	AAMP (ENSOPRG00000005805) #34	ARPC2 (ENSOPRG00000005762) #36	CXCR1 (ENSOPRG00000005754) #37
Tree shrew	MODERN SPECIES	1206										PRKAG3 (ENSTBEG00000014203) #16	CYP27A1 (ENSTBEG00000013927) #17	TTLL4 (ENSTBEG00000012900) #18	STK36 (ENSTBEG00000012469) #19	RNF25 (ENSTBEG00000012303) #20	BCS1L (ENSTBEG00000011958) #21	ZNF142 (ENSTBEG00000011385) #22	ENSTBEG00000011256 #23	CNOT9 (ENSTBEG00000011140) #24	USP37 (ENSTBEG00000010258) #25	VIL1 (ENSTBEG00000017096) #26