Mus	ANCESTRAL SPECIES	10	ENSGT00940000158712	ENSGT00940000158586 #7	ENSGT00390000012377 #8	ENSGT00730000111477 #9	ENSGT00700000106038.B #10	ENSGT00940000158296 #11	ENSGT00390000017718 #12	ENSGT00950000182767.b.b.d #13	ENSGT00730000111160 #15	ENSGT00390000012948.b #16	ENSGT00390000013814 #17	ENSGT00390000006916.d #18	ENSGT00930000151088 #19	ENSGT00940000161442 #20	ENSGT00940000161150 #21	ENSGT00940000162043 #22	ENSGT00390000017800 #23	ENSGT00950000182803.B.d.a.i.b #24	ENSGT00730000111119 #25	ENSGT00940000159896 #26	ENSGT00940000161610 #27	ENSGT00940000161107 #28	ENSGT00510000047831 #29	ENSGT00940000158921 #30	ENSGT00950000183139.B #31	ENSGT00940000162391 #32	ENSGT00950000182987.c.a.a.o.a #33	ENSGT00940000162733 #34	ENSGT00550000074807.d.t #35	ENSGT00390000002201 #36	ENSGT00940000155583
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000158712	ENSGT00940000158586 #7	ENSGT00390000012377 #8	ENSGT00730000111477 #9	ENSGT00700000106038.B #10	ENSGT00940000158296 #11	ENSGT00390000017718 #12	ENSGT00950000182767.b.b.d #13	ENSGT00730000111160 #15	ENSGT00390000012948.b #16	ENSGT00390000013814 #17	ENSGT00390000006916.d #18	ENSGT00930000151088 #19	ENSGT00940000161442 #20	ENSGT00940000161150 #21	ENSGT00940000162043 #22	ENSGT00390000017800 #23	ENSGT00950000182803.B.d.a.i.b #24	ENSGT00730000111119 #25	ENSGT00940000159896 #26	ENSGT00940000161610 #27	ENSGT00940000161107 #28	ENSGT00510000047831 #29	ENSGT00940000158921 #30	ENSGT00950000183139.B #31	ENSGT00940000162391 #32	ENSGT00950000182987.c.a.a.o.a #33	ENSGT00940000162733 #34	ENSGT00550000074807.d.t #35	ENSGT00390000002201 #36	ENSGT00940000155583
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000158712	ENSGT00940000158586 #7	ENSGT00390000012377 #8	ENSGT00730000111477 #9	ENSGT00700000106038.B #10	ENSGT00940000158296 #11	ENSGT00390000017718 #12	ENSGT00950000182767.b.b.d #13	ENSGT00730000111160 #15	ENSGT00390000012948.b #16	ENSGT00390000013814 #17	ENSGT00390000006916.d #18	ENSGT00930000151088 #19	ENSGT00940000161442 #20	ENSGT00940000161150 #21	ENSGT00940000162043 #22	ENSGT00390000017800 #23	ENSGT00950000182803.B.d.a.i.b #24	ENSGT00730000111119 #25	ENSGT00940000159896 #26	ENSGT00940000161610 #27	ENSGT00940000161107 #28	ENSGT00510000047831 #29	ENSGT00940000158921 #30	ENSGT00950000183139.B #31	ENSGT00940000162391 #32	ENSGT00950000182987.c.a.a.o.a #33	ENSGT00940000162733 #34	ENSGT00550000074807.d.t #35	ENSGT00390000002201 #36	ENSGT00940000155583
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000158712	ENSGT00940000158586 #7	ENSGT00390000012377 #8	ENSGT00730000111477 #9	ENSGT00700000106038.B #10	ENSGT00940000158296 #11	ENSGT00390000017718 #12	ENSGT00950000182767.b.b.d #13	ENSGT00730000111160 #15	ENSGT00390000012948.b #16	ENSGT00390000013814 #17	ENSGT00390000006916.d #18	ENSGT00930000151088 #19	ENSGT00940000161442 #20	ENSGT00940000161150 #21	ENSGT00940000162043 #22	ENSGT00390000017800 #23	ENSGT00950000182803.B.d.a.i.b #24	ENSGT00730000111119 #25	ENSGT00940000159896 #26	ENSGT00940000161610 #27	ENSGT00940000161107 #28	ENSGT00510000047831 #29	ENSGT00940000158921 #30	ENSGT00950000183139.B #31	ENSGT00940000162391 #32	ENSGT00950000182987.c.a.a.o.a #33	ENSGT00940000162733 #34	ENSGT00550000074807.d.t #35	ENSGT00390000002201 #36	ENSGT00940000155583
spretus	MODERN SPECIES	3	Klhl28 (MGP_SPRETEiJ_G0018632) #7	Gm527 (MGP_SPRETEiJ_G0018631) #8	Fscb (MGP_SPRETEiJ_G0018630) #9	MGP_SPRETEiJ_G0018629 #10	Lrfn5 (MGP_SPRETEiJ_G0018628) #11	Fbxo33 (MGP_SPRETEiJ_G0018627) #12	MGP_SPRETEiJ_G0018626 #13	MGP_SPRETEiJ_G0018625 #14	Pnn (MGP_SPRETEiJ_G0018624) #15	Trappc6b (MGP_SPRETEiJ_G0018623) #16	Gemin2 (MGP_SPRETEiJ_G0018622) #17	Sec23a (MGP_SPRETEiJ_G0018621) #18	Clec14a (MGP_SPRETEiJ_G0018620) #19	Sstr1 (MGP_SPRETEiJ_G0018619) #20	Ttc6 (MGP_SPRETEiJ_G0018618) #21	Foxa1 (MGP_SPRETEiJ_G0018617) #22	Mipol1 (MGP_SPRETEiJ_G0018616) #23	MGP_SPRETEiJ_G0018615 #24	Slc25a21 (MGP_SPRETEiJ_G0018614) #25	Pax9 (MGP_SPRETEiJ_G0018613) #26	Nkx2-9 (MGP_SPRETEiJ_G0018612) #27	Nkx2-1 (MGP_SPRETEiJ_G0018611) #28	Mbip (MGP_SPRETEiJ_G0018610) #29	Brms1l (MGP_SPRETEiJ_G0018609) #30	MGP_SPRETEiJ_G0018608 #31	Insm2 (MGP_SPRETEiJ_G0018607) #32	Aldoart2 (MGP_SPRETEiJ_G0018606) #33	Nfkbia (MGP_SPRETEiJ_G0018605) #34	Psma6 (MGP_SPRETEiJ_G0018604) #35	MGP_SPRETEiJ_G0018603 #36	Fam177a2 (MGP_SPRETEiJ_G0018602) #37
Steppe mouse	MODERN SPECIES	3093				ENSMSIG00000006404	Fbxo33 (ENSMSIG00000006382) #12	Mia2 (ENSMSIG00000004657) #13	ENSMSIG00000004612	Pnn (ENSMSIG00000004589) #15	Trappc6b (ENSMSIG00000004504) #16	Gemin2 (ENSMSIG00000004461) #17	Sec23a (ENSMSIG00000004324) #18	Clec14a (ENSMSIG00000004305) #19	Sstr1 (ENSMSIG00000004290) #20	ENSMSIG00000004260	Ttc6 (ENSMSIG00000004114) #21	Foxa1 (ENSMSIG00000004077) #22	ENSMSIG00000004065	Mipol1 (ENSMSIG00000003863) #23
Mouse	MODERN SPECIES	3	Prpf39 (ENSMUSG00000035597)	Togaram1 (ENSMUSG00000035614)	Klhl28 (ENSMUSG00000020948) #7	Gm527 (ENSMUSG00000047227) #8	Fscb (ENSMUSG00000043060) #9	Lrfn5 (ENSMUSG00000035653) #11	Fbxo33 (ENSMUSG00000035329) #12	Mia2 (ENSMUSG00000021000) #13	Pnn (ENSMUSG00000020994) #15	Trappc6b (ENSMUSG00000020993) #16	Gemin2 (ENSMUSG00000060121) #17	Sec23a (ENSMUSG00000020986) #18	Clec14a (ENSMUSG00000045930) #19	Sstr1 (ENSMUSG00000035431) #20	Ttc6 (ENSMUSG00000046782) #21	Foxa1 (ENSMUSG00000035451) #22	Mipol1 (ENSMUSG00000047022) #23	Prps1l3 (ENSMUSG00000079104) ##24	Slc25a21 (ENSMUSG00000035472) #25	Pax9 (ENSMUSG00000001497) #26	Nkx2-9 (ENSMUSG00000058669) #27	Nkx2-1 (ENSMUSG00000001496) #28	Mbip (ENSMUSG00000021028) #29	Brms1l (ENSMUSG00000012076) #30	Ralgapa1 (ENSMUSG00000021027) #31	Insm2 (ENSMUSG00000045440) #32	Aldoart2 (ENSMUSG00000063129) #33	Nfkbia (ENSMUSG00000021025) #34	Psma6 (ENSMUSG00000021024) #35	Prorp (ENSMUSG00000021023) #36	Ppp2r3c (ENSMUSG00000021022)
Ryukyu mouse	MODERN SPECIES	3	Klhl28 (MGP_CAROLIEiJ_G0017787) #7	Gm527 (MGP_CAROLIEiJ_G0017786) #8	MGP_CAROLIEiJ_G0017785 #9	MGP_CAROLIEiJ_G0017784 #10	Lrfn5 (MGP_CAROLIEiJ_G0017783) #11	Fbxo33 (MGP_CAROLIEiJ_G0017782) #12	MGP_CAROLIEiJ_G0017781 #13	MGP_CAROLIEiJ_G0017780 #13	Pnn (MGP_CAROLIEiJ_G0017779) #15	Trappc6b (MGP_CAROLIEiJ_G0017778) #16	Gemin2 (MGP_CAROLIEiJ_G0017777) #17	Sec23a (MGP_CAROLIEiJ_G0017776) #18	Clec14a (MGP_CAROLIEiJ_G0017775) #19	Sstr1 (MGP_CAROLIEiJ_G0017774) #20	Ttc6 (MGP_CAROLIEiJ_G0017773) #21	Foxa1 (MGP_CAROLIEiJ_G0017772) #22	Mipol1 (MGP_CAROLIEiJ_G0017771) #23	MGP_CAROLIEiJ_G0017770 #24	Slc25a21 (MGP_CAROLIEiJ_G0017769) #25	Pax9 (MGP_CAROLIEiJ_G0017768) #26	Nkx2-9 (MGP_CAROLIEiJ_G0017767) #27	Nkx2-1 (MGP_CAROLIEiJ_G0017766) #28	Mbip (MGP_CAROLIEiJ_G0017765) #29	Brms1l (MGP_CAROLIEiJ_G0017764) #30	MGP_CAROLIEiJ_G0017763 #31	Insm2 (MGP_CAROLIEiJ_G0017762) #32	Aldoart2 (MGP_CAROLIEiJ_G0017761) #33	Nfkbia (MGP_CAROLIEiJ_G0017760) #34	Psma6 (MGP_CAROLIEiJ_G0017759) #35	Prorp (MGP_CAROLIEiJ_G0017758) #36	Ppp2r3c (MGP_CAROLIEiJ_G0017757)
Shrew mouse	MODERN SPECIES	20	Klhl28 (MGP_PahariEiJ_G0029543) #7	Gm527 (MGP_PahariEiJ_G0029542) #8	MGP_PahariEiJ_G0029541 #9	MGP_PahariEiJ_G0029540 #10	Lrfn5 (MGP_PahariEiJ_G0029539) #11	Fbxo33 (MGP_PahariEiJ_G0029538) #12	MGP_PahariEiJ_G0029537 #13	MGP_PahariEiJ_G0029536 #13	Pnn (MGP_PahariEiJ_G0029535) #15	Trappc6b (MGP_PahariEiJ_G0029534) #16	Gemin2 (MGP_PahariEiJ_G0029533) #17	Sec23a (MGP_PahariEiJ_G0029532) #18	Clec14a (MGP_PahariEiJ_G0029531) #19	Sstr1 (MGP_PahariEiJ_G0029530) #20	MGP_PahariEiJ_G0029529	Foxa1 (MGP_PahariEiJ_G0029528) #22	Mipol1 (MGP_PahariEiJ_G0029527) #23	MGP_PahariEiJ_G0029526 #24	Slc25a21 (MGP_PahariEiJ_G0029525) #25	Pax9 (MGP_PahariEiJ_G0029524) #26	Nkx2-9 (MGP_PahariEiJ_G0029523) #27	Nkx2-1 (MGP_PahariEiJ_G0029522) #28	Mbip (MGP_PahariEiJ_G0029521) #29	Brms1l (MGP_PahariEiJ_G0029520) #30	MGP_PahariEiJ_G0029519 #31	Insm2 (MGP_PahariEiJ_G0029518) #32	Aldoart2 (MGP_PahariEiJ_G0029517) #33	Nfkbia (MGP_PahariEiJ_G0029516) #34	Psma6 (MGP_PahariEiJ_G0029515) #35	Prorp (MGP_PahariEiJ_G0029514) #36	Ppp2r3c (MGP_PahariEiJ_G0029513)