Chordata	ANCESTRAL SPECIES																	ENSGT00940000160614 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000160614 #22
Gnathostomata	ANCESTRAL SPECIES	613												ENSGT00940000180153	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156941 #25
Euteleostomi	ANCESTRAL SPECIES	426												ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26
Sarcopterygii	ANCESTRAL SPECIES	26	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00950000182930.D	ENSGT00440000033720.b	ENSGT00940000159865
Tetrapoda	ANCESTRAL SPECIES	12	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00390000003197	ENSGT00390000001143
Amniota	ANCESTRAL SPECIES	13	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00390000003197	ENSGT00390000001143
Mammalia	ANCESTRAL SPECIES	7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00390000003197	ENSGT00390000001143
Theria	ANCESTRAL SPECIES	5	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00550000074917	ENSGT00940000153783.b.b.c.a	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00390000003197	ENSGT00390000001143
Eutheria	ANCESTRAL SPECIES	5	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000164826	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.a
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Primates	ANCESTRAL SPECIES	1	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980.p	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000156739.b.a
Bushbaby	MODERN SPECIES	281														FXR1 (ENSOGAG00000008751) #20	ENSOGAG00000008754 #21	SOX2 (ENSOGAG00000029165) #22	ATP11B (ENSOGAG00000005672) #23	DCUN1D1 (ENSOGAG00000000658) #24	MCCC1 (ENSOGAG00000000659) #25	ENSOGAG00000000661 #26	MCF2L2 (ENSOGAG00000000662) #27	B3GNT5 (ENSOGAG00000027145) #28	KLHL6 (ENSOGAG00000000666) #29	KLHL24 (ENSOGAG00000033529) #30	YEATS2 (ENSOGAG00000013954) #31	MAP6D1 (ENSOGAG00000030318) #32	PARL (ENSOGAG00000006126) #33	VPS53 (ENSOGAG00000001350) #34	TLCD3A (ENSOGAG00000001351) #35	GEMIN4 (ENSOGAG00000001353) #36	ENSOGAG00000032014 #37
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980.p	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a.g.a #21	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000164826	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Lemuriformes_a	ANCESTRAL SPECIES	9	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980.p	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a.g.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000164826	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000156739.b.a.a	ENSGT00940000156739.b.a.b
Greater bamboo lemur	MODERN SPECIES	177									ENSPSMG00000011929	ENSPSMG00000011919	ENSPSMG00000011908	ENSPSMG00000011886	FXR1 (ENSPSMG00000011829) #20	ENSPSMG00000011691 #21	ENSPSMG00000011678	SOX2 (ENSPSMG00000011661) #22	ENSPSMG00000011653
Coquerels sifaka	MODERN SPECIES	51														ENSPCOG00000016536	ENSPCOG00000012889	SOX2 (ENSPCOG00000012108) #22	ATP11B (ENSPCOG00000009904) #23	DCUN1D1 (ENSPCOG00000026616) #24	MCCC1 (ENSPCOG00000020095) #25	ENSPCOG00000009968 #26	MCF2L2 (ENSPCOG00000023043) #27	ENSPCOG00000025090	ENSPCOG00000025238	KLHL24 (ENSPCOG00000014525) #30	YEATS2 (ENSPCOG00000018918) #31	MAP6D1 (ENSPCOG00000027653) #32	PARL (ENSPCOG00000010637) #33	CYP2AB1 (ENSPCOG00000016717)	ABCC5 (ENSPCOG00000025758)	ENSPCOG00000015936	ENSPCOG00000027112
Mouse lemur	MODERN SPECIES		MFN1 (ENSMICG00000049257)	GNB4 (ENSMICG00000049251)	ACTL6A (ENSMICG00000049032)	MRPL47 (ENSMICG00000049377)	ENSMICG00000049551	USP13 (ENSMICG00000049124)	ENSMICG00000049219	PEX5L (ENSMICG00000048938)	TTC14 (ENSMICG00000049351)	CCDC39 (ENSMICG00000048849)	ENSMICG00000049410	ENSMICG00000048978 #20	ENSMICG00000049008 #21	ENSMICG00000049314	ENSMICG00000049506	SOX2 (ENSMICG00000049239) #22	ENSMICG00000048904	ATP11B (ENSMICG00000049475) #23	ENSMICG00000049045 #24	MCCC1 (ENSMICG00000048884) #25	ENSMICG00000049005 #26	MCF2L2 (ENSMICG00000049191) #27	B3GNT5 (ENSMICG00000049049) #28	ENSMICG00000049437	ENSMICG00000049467	KLHL24 (ENSMICG00000049481) #30	YEATS2 (ENSMICG00000049411) #31	MAP6D1 (ENSMICG00000049143) #32	PARL (ENSMICG00000049265) #33	CYP2AB1 (ENSMICG00000049184)	ABCC5 (ENSMICG00000049116)
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Platyrrhini	ANCESTRAL SPECIES	96															ENSGT00940000154384.h.a.d #21	ENSGT00940000160614 #22
Cebidae	ANCESTRAL SPECIES	14	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837.r	ENSGT00390000002837.q	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a.c.b.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.f #24	ENSGT00940000156941.j #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063.p #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.a	ENSGT00940000163899
Cebidae_a	ANCESTRAL SPECIES	14	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837.r	ENSGT00390000014814.a.b.a.a.b	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a.c.b.a.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.f #24	ENSGT00940000156941.j #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063.p #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.a	ENSGT00940000163899	ENSGT00510000047568
Capuchin	MODERN SPECIES	111	DGKG (ENSCCAG00000029064)	CRYGS (ENSCCAG00000024626)	TBCCD1 (ENSCCAG00000034607)	DNAJB11 (ENSCCAG00000036818)	AHSG (ENSCCAG00000035436)	FETUB (ENSCCAG00000023367)	HRG (ENSCCAG00000018171)	KNG1 (ENSCCAG00000031351)	ENSCCAG00000026259	ENSCCAG00000021313	EIF4A2 (ENSCCAG00000036268)	RFC4 (ENSCCAG00000029943)	ADIPOQ (ENSCCAG00000031131)	FXR1 (ENSCCAG00000025006) #20	ENSCCAG00000031123 #21	SOX2 (ENSCCAG00000020109) #22	TCF7L2 (ENSCCAG00000031432)	HABP2 (ENSCCAG00000031203)	NRAP (ENSCCAG00000022013)
Marmoset	MODERN SPECIES	6	MFN1 (ENSCJAG00000013155)	ACTL6A (ENSCJAG00000013036)	ENSCJAG00000013028	NDUFB5 (ENSCJAG00000013015)	ENSCJAG00000039957	USP13 (ENSCJAG00000012999)	ENSCJAG00000077201	PEX5L (ENSCJAG00000012957)	ENSCJAG00000081830	TTC14 (ENSCJAG00000012923)	CCDC39 (ENSCJAG00000012901)	FXR1 (ENSCJAG00000012802) #20	ENSCJAG00000012795 #21	ENSCJAG00000069793	ENSCJAG00000080211	SOX2 (ENSCJAG00000008401) #22	ENSCJAG00000070332	ENSCJAG00000076627	ENSCJAG00000072440	ENSCJAG00000076242	ATP11B (ENSCJAG00000005176) #23	DCUN1D1 (ENSCJAG00000005148) #24	MCCC1 (ENSCJAG00000005103) #25	ENSCJAG00000081113	MCF2L2 (ENSCJAG00000021205) #27	B3GNT5 (ENSCJAG00000059459) #28	KLHL6 (ENSCJAG00000021212) #29	KLHL24 (ENSCJAG00000082211) #30	YEATS2 (ENSCJAG00000021219) #31	PARL (ENSCJAG00000021241) #33	ABCC5 (ENSCJAG00000013172)
Mas night monkey	MODERN SPECIES	793														FXR1 (ENSANAG00000026001) #20	DNAJC19 (ENSANAG00000023901) #21	SOX2 (ENSANAG00000000047) #22	ENSANAG00000023464	ENSANAG00000018148	ATP11B (ENSANAG00000033054) #23	ENSANAG00000020880 #24	MCCC1 (ENSANAG00000028235) #25	LAMP3 (ENSANAG00000021411)	MCF2L2 (ENSANAG00000030096) #27	KLHL6 (ENSANAG00000034934) #29	KLHL24 (ENSANAG00000030957) #30	ENSANAG00000032967	YEATS2 (ENSANAG00000034729) #31	MAP6D1 (ENSANAG00000031904) #32	ENSANAG00000028369	ENSANAG00000032750 #33	ABCC5 (ENSANAG00000022138)
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00940000154639.n.a	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00910000147149	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00940000154639.n.a	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00910000147149	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Hominidae	ANCESTRAL SPECIES	2	ENSGT00530000063564.b.e.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00940000154639.n.a	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00910000147149	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00940000154639.n.a	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000154942.h.q.b	ENSGT00940000158890.q	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00910000147149	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000154037.A.m
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00940000154639.n.a	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000154942.h.q.b	ENSGT00940000158890.q	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000154037.A.m	ENSGT00940000156739.b.b.a
Pan	ANCESTRAL SPECIES	2	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00940000154639.n.a	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000154942.h.q.b	ENSGT00940000158890.q	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00910000147572	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000154037.A.m
Chimpanzee	MODERN SPECIES	16	GNB4 (ENSPTRG00000015646)	ENSPTRG00000050962	ACTL6A (ENSPTRG00000023973)	MRPL47 (ENSPTRG00000015648)	NDUFB5 (ENSPTRG00000015649)	USP13 (ENSPTRG00000015650)	PEX5L (ENSPTRG00000015651)	ENSPTRG00000049028	TTC14 (ENSPTRG00000015652)	CCDC39 (ENSPTRG00000015653)	ENSPTRG00000052129	ENSPTRG00000045151	ENSPTRG00000015656 #20	DNAJC19 (ENSPTRG00000030046) #21	ENSPTRG00000047311	SOX2 (ENSPTRG00000030045) #22	ENSPTRG00000050568	ENSPTRG00000047631	ATP11B (ENSPTRG00000015660) #23	DCUN1D1 (ENSPTRG00000015661) #24	MCCC1 (ENSPTRG00000015662) #25	LAMP3 (ENSPTRG00000015663)	MCF2L2 (ENSPTRG00000015665) #27	B3GNT5 (ENSPTRG00000015666) #28	KLHL6 (ENSPTRG00000015667) #29	KLHL24 (ENSPTRG00000015669) #30	YEATS2 (ENSPTRG00000015670) #31	MAP6D1 (ENSPTRG00000015672) #32	PARL (ENSPTRG00000015673) #33	ENSPTRG00000048232	ABCC5 (ENSPTRG00000050934)
Bonobo	MODERN SPECIES	16	GNB4 (ENSPPAG00000043825)	ENSPPAG00000031844	ACTL6A (ENSPPAG00000031814)	MRPL47 (ENSPPAG00000028033)	NDUFB5 (ENSPPAG00000032519)	USP13 (ENSPPAG00000001256)	PEX5L (ENSPPAG00000036179)	ENSPPAG00000001167	TTC14 (ENSPPAG00000040361)	CCDC39 (ENSPPAG00000027438)	ENSPPAG00000015512	ENSPPAG00000043783	ENSPPAG00000037630 #20	DNAJC19 (ENSPPAG00000019978) #21	ENSPPAG00000027884	SOX2 (ENSPPAG00000041083) #22	ENSPPAG00000036037	ENSPPAG00000039113	ATP11B (ENSPPAG00000039428) #23	DCUN1D1 (ENSPPAG00000029981) #24	MCCC1 (ENSPPAG00000036167) #25	LAMP3 (ENSPPAG00000027592)	MCF2L2 (ENSPPAG00000032914) #27	B3GNT5 (ENSPPAG00000000714) #28	KLHL6 (ENSPPAG00000028141) #29	KLHL24 (ENSPPAG00000034331) #30	YEATS2 (ENSPPAG00000015640) #31	PARL (ENSPPAG00000037739) #33	ENSPPAG00000032200	ABCC5 (ENSPPAG00000029506)	ENSPPAG00000035283
Human	MODERN SPECIES	15	ZMAT3 (ENSG00000172667)	PIK3CA (ENSG00000121879)	KCNMB3 (ENSG00000171121)	ZNF639 (ENSG00000121864)	MFN1 (ENSG00000171109)	GNB4 (ENSG00000114450)	ACTL6A (ENSG00000136518)	MRPL47 (ENSG00000136522)	NDUFB5 (ENSG00000136521)	USP13 (ENSG00000058056)	PEX5L (ENSG00000114757)	TTC14 (ENSG00000163728)	CCDC39 (ENSG00000284862)	FXR1 (ENSG00000114416) #20	DNAJC19 (ENSG00000205981) #21	SOX2 (ENSG00000181449) #22	ATP11B (ENSG00000058063) #23	DCUN1D1 (ENSG00000043093) #24	MCCC1 (ENSG00000078070) #25	LAMP3 (ENSG00000078081)	MCF2L2 (ENSG00000053524) #27	B3GNT5 (ENSG00000176597) #28	KLHL6 (ENSG00000172578) #29	KLHL24 (ENSG00000114796) #30	YEATS2 (ENSG00000163872) #31	ENSG00000283765	MAP6D1 (ENSG00000180834) #32	PARL (ENSG00000175193) #33	ABCC5 (ENSG00000114770)	HTR3D (ENSG00000186090)	HTR3C (ENSG00000178084)
Orangutan	MODERN SPECIES	16	ENSPPYG00000034294	KCNMB3 (ENSPPYG00000014316)	ZNF639 (ENSPPYG00000031916)	MFN1 (ENSPPYG00000014318)	GNB4 (ENSPPYG00000040073)	ENSPPYG00000040586	ACTL6A (ENSPPYG00000014320)	MRPL47 (ENSPPYG00000014321)	NDUFB5 (ENSPPYG00000037815)	USP13 (ENSPPYG00000014322)	PEX5L (ENSPPYG00000014323)	ENSPPYG00000014324	CCDC39 (ENSPPYG00000014325)	FXR1 (ENSPPYG00000014327) #20	DNAJC19 (ENSPPYG00000014328) #21	SOX2 (ENSPPYG00000014330) #22	ENSPPYG00000031318	ATP11B (ENSPPYG00000029655) #23	ENSPPYG00000029837 #24	MCCC1 (ENSPPYG00000014331) #25	LAMP3 (ENSPPYG00000014332)	MCF2L2 (ENSPPYG00000014333) #27	B3GNT5 (ENSPPYG00000032259) #28	KLHL6 (ENSPPYG00000029418) #29	KLHL24 (ENSPPYG00000014335) #30	YEATS2 (ENSPPYG00000014336) #31	MAP6D1 (ENSPPYG00000035906) #32	PARL (ENSPPYG00000014338) #33	ABCC5 (ENSPPYG00000014339)	ENSPPYG00000014340	HTR3C (ENSPPYG00000014341)
Gibbon	MODERN SPECIES	1	ZNF639 (ENSNLEG00000005744)	MFN1 (ENSNLEG00000005745)	GNB4 (ENSNLEG00000005751)	ENSNLEG00000035220	ACTL6A (ENSNLEG00000035913)	MRPL47 (ENSNLEG00000005831)	NDUFB5 (ENSNLEG00000034646)	USP13 (ENSNLEG00000005851)	PEX5L (ENSNLEG00000005874)	ENSNLEG00000030368	TTC14 (ENSNLEG00000005900)	CCDC39 (ENSNLEG00000005916)	ENSNLEG00000033880	FXR1 (ENSNLEG00000005928) #20	DNAJC19 (ENSNLEG00000033702) #21	SOX2 (ENSNLEG00000018940) #22	ENSNLEG00000032218	ENSNLEG00000030225	ENSNLEG00000032897	ATP11B (ENSNLEG00000005959) #23	DCUN1D1 (ENSNLEG00000005983) #24	MCCC1 (ENSNLEG00000005989) #25	LAMP3 (ENSNLEG00000006034)	MCF2L2 (ENSNLEG00000006037) #27	B3GNT5 (ENSNLEG00000018942) #28	ENSNLEG00000006063	KLHL24 (ENSNLEG00000006066) #30	YEATS2 (ENSNLEG00000006070) #31	ENSNLEG00000034670	PARL (ENSNLEG00000006072) #33	ABCC5 (ENSNLEG00000006079)
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00910000147799	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00940000154639.n.a	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00910000147149	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00390000013727.d	ENSGT00910000147799	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00910000147149	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00910000147799	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837.m	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00940000154639.n.a	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00910000147139	ENSGT00910000147149	ENSGT00530000063947.B #32	ENSGT00390000013063 #33
Macaca	ANCESTRAL SPECIES	5	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156000.o.b	ENSGT00940000156305	ENSGT00390000002837.m	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00940000154639.n.a	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00910000147139	ENSGT00910000147149	ENSGT00530000063947.B #32	ENSGT00390000013063 #33
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00940000156335.o	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156000.o.b	ENSGT00940000156305	ENSGT00390000002837.m	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT01100000263509.a.a.b.b.a.b.a.a.a.a	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000154345.b #29	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.a	ENSGT00940000163899
Crab-eating macaque	MODERN SPECIES	11	ENSMFAG00000030517	ENSMFAG00000065242	ENSMFAG00000054257	ACTL6A (ENSMFAG00000030153)	ENSMFAG00000053669	NDUFB5 (ENSMFAG00000042220)	USP13 (ENSMFAG00000042834)	ENSMFAG00000061892	PEX5L (ENSMFAG00000036976)	ENSMFAG00000053927	TTC14 (ENSMFAG00000046249)	CCDC39 (ENSMFAG00000002267)	FXR1 (ENSMFAG00000040264) #20	DNAJC19 (ENSMFAG00000034041) #21	ENSMFAG00000058781	SOX2 (ENSMFAG00000027781) #22	ENSMFAG00000003633	ATP11B (ENSMFAG00000035388) #23	MCCC1 (ENSMFAG00000000043) #25	LAMP3 (ENSMFAG00000042658)	ENSMFAG00000050998	MCF2L2 (ENSMFAG00000036484) #27	B3GNT5 (ENSMFAG00000011168) #28	ENSMFAG00000035316	YEATS2 (ENSMFAG00000045323) #31	MAP6D1 (ENSMFAG00000064027) #32	PARL (ENSMFAG00000036652) #33	ABCC5 (ENSMFAG00000038091)	HTR3C (ENSMFAG00000042002)	HTR3E (ENSMFAG00000001496)	EIF2B5 (ENSMFAG00000045589)
Pig-tailed macaque	MODERN SPECIES	563											TTC14 (ENSMNEG00000044800)	CCDC39 (ENSMNEG00000033311)	ENSMNEG00000041132	FXR1 (ENSMNEG00000031733) #20	DNAJC19 (ENSMNEG00000037111) #21	SOX2 (ENSMNEG00000026232) #22	ENSMNEG00000023089	ENSMNEG00000031959	ENSMNEG00000041253	ATP11B (ENSMNEG00000044870) #23	DCUN1D1 (ENSMNEG00000034646) #24	MCCC1 (ENSMNEG00000017163) #25	LAMP3 (ENSMNEG00000039831)	ENSMNEG00000023945	MCF2L2 (ENSMNEG00000028315) #27	B3GNT5 (ENSMNEG00000027097) #28	KLHL6 (ENSMNEG00000022023) #29	KLHL24 (ENSMNEG00000039455) #30	YEATS2 (ENSMNEG00000042931) #31	ENSMNEG00000009930	MAP6D1 (ENSMNEG00000024173) #32
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00390000013727.d	ENSGT00910000147799	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837.m	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00910000147139	ENSGT00910000147149	ENSGT00530000063947.B #32	ENSGT00390000013063 #33
Cercopithecinae_d	ANCESTRAL SPECIES	52											ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b.g.a #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00910000147139	ENSGT00910000147149	ENSGT00530000063947.B #32	ENSGT00390000013063 #33
Sooty mangabey	MODERN SPECIES	292											TTC14 (ENSCATG00000031048)	CCDC39 (ENSCATG00000039842)	ENSCATG00000032808	FXR1 (ENSCATG00000040925) #20	DNAJC19 (ENSCATG00000035477) #21	SOX2 (ENSCATG00000016562) #22	ENSCATG00000016756	ENSCATG00000035017	ATP11B (ENSCATG00000038132) #23	DCUN1D1 (ENSCATG00000036712) #24	MCCC1 (ENSCATG00000037699) #25	LAMP3 (ENSCATG00000044257)	MCF2L2 (ENSCATG00000012769) #27	B3GNT5 (ENSCATG00000023620) #28
Vervet Monkey	MODERN SPECIES	6	PIK3CA (ENSCSAG00000012948)	KCNMB3 (ENSCSAG00000012962)	ZNF639 (ENSCSAG00000012977)	MFN1 (ENSCSAG00000012988)	GNB4 (ENSCSAG00000012993)	ACTL6A (ENSCSAG00000013017)	ENSCSAG00000013046	NDUFB5 (ENSCSAG00000013080)	USP13 (ENSCSAG00000013094)	PEX5L (ENSCSAG00000013101)	TTC14 (ENSCSAG00000013105)	CCDC39 (ENSCSAG00000013137)	ENSCSAG00000013166	FXR1 (ENSCSAG00000013179) #20	DNAJC19 (ENSCSAG00000013183) #21	SOX2 (ENSCSAG00000018883) #22	ATP11B (ENSCSAG00000013201) #23	DCUN1D1 (ENSCSAG00000013212) #24	MCCC1 (ENSCSAG00000013226) #25	ENSCSAG00000013232 #26	B3GNT5 (ENSCSAG00000018882) #28	MCF2L2 (ENSCSAG00000013245) #27	KLHL6 (ENSCSAG00000013258) #29	KLHL24 (ENSCSAG00000013266) #30	YEATS2 (ENSCSAG00000013383) #31	MAP6D1 (ENSCSAG00000013437) #32	PARL (ENSCSAG00000013473) #33	ABCC5 (ENSCSAG00000013503)	HTR3D (ENSCSAG00000013515)	HTR3C (ENSCSAG00000013533)	HTR3E (ENSCSAG00000013540)
Rhinopithecus	ANCESTRAL SPECIES	202	ENSGT00940000156335.o	ENSGT00390000013727.d	ENSGT00910000147799	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.s	ENSGT00940000157401	ENSGT00940000155931	ENSGT00940000154639.n.a	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00910000146924	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a	ENSGT00940000162645	ENSGT00910000146913	ENSGT00940000163645
Golden snub-nosed monkey	MODERN SPECIES	1098																SOX2 (ENSRROG00000010755) #22	ENSRROG00000032008	ENSRROG00000038555
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Glires	ANCESTRAL SPECIES	2	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Rodentia	ANCESTRAL SPECIES	2	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00510000047568
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00510000047568
Myomorpha	ANCESTRAL SPECIES	38	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00940000153661.b.b
Muroidea	ANCESTRAL SPECIES	83	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00940000153661.b.b
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487	ENSGT00940000156842
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701.g.a	ENSGT00390000013701.g.b	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C.d	ENSGT00940000155988	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487	ENSGT00940000156842	ENSGT00390000003555
Cricetidae_B	ANCESTRAL SPECIES	55	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701.g.a	ENSGT00390000013701.g.b	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00940000153661.b.b	ENSGT00940000157312	ENSGT00950000183169.C.d
Northern American deer mouse	MODERN SPECIES	19	Pik3ca (ENSPEMG00000018399)	Kcnmb3 (ENSPEMG00000015081)	Zfp639 (ENSPEMG00000011611)	Mfn1 (ENSPEMG00000010348)	Gnb4 (ENSPEMG00000028778)	Actl6a (ENSPEMG00000015742)	Mrpl47 (ENSPEMG00000026294)	Ndufb5 (ENSPEMG00000018635)	Usp13 (ENSPEMG00000001021)	Pex5l (ENSPEMG00000006300)	Ttc14 (ENSPEMG00000013671)	Ccdc39 (ENSPEMG00000017829)	Fxr1 (ENSPEMG00000012962) #20	ENSPEMG00000006887 #21	ENSPEMG00000026113	Sox2 (ENSPEMG00000013974) #22	ENSPEMG00000024881	Atp11b (ENSPEMG00000001656) #23	ENSPEMG00000018868 #24	Mccc1 (ENSPEMG00000014164) #25	ENSPEMG00000011597	Acad9 (ENSPEMG00000010549)	Zfp267 (ENSPEMG00000028230)	Qrfpr (ENSPEMG00000000133)	ENSPEMG00000001402	ENSPEMG00000026454	Anxa5 (ENSPEMG00000015439)	ENSPEMG00000025311	ENSPEMG00000008579	ENSPEMG00000013052	ENSPEMG00000025409
Prairie vole	MODERN SPECIES		Pik3ca (ENSMOCG00000013980)	Kcnmb3 (ENSMOCG00000016804)	Zfp639 (ENSMOCG00000020301)	Mfn1 (ENSMOCG00000019248)	Gnb4 (ENSMOCG00000015281)	Actl6a (ENSMOCG00000014148)	ENSMOCG00000007933	ENSMOCG00000019293	Usp13 (ENSMOCG00000015377)	Pex5l (ENSMOCG00000014372)	ENSMOCG00000020574	ENSMOCG00000012924	Ccdc39 (ENSMOCG00000018440)	Fxr1 (ENSMOCG00000017707) #20	Dnajc19 (ENSMOCG00000004841) ##21	Sox2 (ENSMOCG00000008169) #22	ENSMOCG00000011558	Atp11b (ENSMOCG00000013153) #23	ENSMOCG00000005771 #24	Mccc1 (ENSMOCG00000003671) #25	ENSMOCG00000009970	Acad9 (ENSMOCG00000013263)	Zfp267 (ENSMOCG00000020503)	Scfd1 (ENSMOCG00000017239)	G2e3 (ENSMOCG00000012420)	Prkd1 (ENSMOCG00000021339)	Foxg1 (ENSMOCG00000008016)	ENSMOCG00000007728	Nova1 (ENSMOCG00000006277)	Stxbp6 (ENSMOCG00000008146)	Nrcam (ENSMOCG00000016008)
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701.g.a	ENSGT00390000013701.g.b	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C.d	ENSGT01070000253744.a.b	ENSGT00940000155988	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487	ENSGT00940000156842	ENSGT00390000003555
Chinese hamster chok1gshd	MODERN SPECIES	352	Zmat3 (ENSCGRG00001012339)	Pik3ca (ENSCGRG00001019897)	Kcnmb3 (ENSCGRG00001008742)	ENSCGRG00001021748	ENSCGRG00001022585	Gnb4 (ENSCGRG00001021439)	Actl6a (ENSCGRG00001013395)	Mrpl47 (ENSCGRG00001015111)	Ndufb5 (ENSCGRG00001005505)	Usp13 (ENSCGRG00001017123)	Pex5l (ENSCGRG00001018482)	Ttc14 (ENSCGRG00001021605)	Ccdc39 (ENSCGRG00001018347)	Fxr1 (ENSCGRG00001024795) #20	ENSCGRG00001000090 #21	Sox2 (ENSCGRG00001008732) #22	Atp11b (ENSCGRG00001021308) #23	ENSCGRG00001013592	ENSCGRG00001019778 #24	Mccc1 (ENSCGRG00001012469) #25	ENSCGRG00001017668	Acad9 (ENSCGRG00001017444)	Zfp267 (ENSCGRG00001019794)	Qrfpr (ENSCGRG00001015065)	Anxa5 (ENSCGRG00001011395)	Exosc9 (ENSCGRG00001023030)	Ccna2 (ENSCGRG00001021415)	Bbs7 (ENSCGRG00001022476)	Trpc3 (ENSCGRG00001021196)	Bltp1 (ENSCGRG00001009244)	Adad1 (ENSCGRG00001010493)
Golden Hamster	MODERN SPECIES	636	Zmat3 (ENSMAUG00000001986)	Pik3ca (ENSMAUG00000019874)	Kcnmb3 (ENSMAUG00000005213)	Mfn1 (ENSMAUG00000010778)	Gnb4 (ENSMAUG00000011589)	ENSMAUG00000018855	Mrpl47 (ENSMAUG00000010772)	Ndufb5 (ENSMAUG00000017888)	Usp13 (ENSMAUG00000008996)	Pex5l (ENSMAUG00000011108)	ENSMAUG00000009258	ENSMAUG00000000140	Ccdc39 (ENSMAUG00000009369)	Fxr1 (ENSMAUG00000001188) #20	ENSMAUG00000011285 #21	Sox2 (ENSMAUG00000017052) #22	Atp11b (ENSMAUG00000000325) #23	ENSMAUG00000018021 #24	ENSMAUG00000019275	Mccc1 (ENSMAUG00000018926) #25	ENSMAUG00000000987	ENSMAUG00000011985	Acad9 (ENSMAUG00000013695)	Zfp267 (ENSMAUG00000000240)	Qrfpr (ENSMAUG00000016873)	Anxa5 (ENSMAUG00000014445)	Exosc9 (ENSMAUG00000008629)	Ccna2 (ENSMAUG00000018247)	Bbs7 (ENSMAUG00000001973)	ENSMAUG00000009808	Bltp1 (ENSMAUG00000017326)
Murinae	ANCESTRAL SPECIES	5	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487	ENSGT00940000156842	ENSGT00390000003555
Mus	ANCESTRAL SPECIES	7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT00860000136163	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487	ENSGT00940000156842
Mus_A	ANCESTRAL SPECIES	9	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837.y	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT00860000136163	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487
Ryukyu mouse	MODERN SPECIES	12	Zmat3 (MGP_CAROLIEiJ_G0024914)	Pik3ca (MGP_CAROLIEiJ_G0024915)	Kcnmb3 (MGP_CAROLIEiJ_G0024916)	Zfp639 (MGP_CAROLIEiJ_G0024917)	MGP_CAROLIEiJ_G0024918	Gnb4 (MGP_CAROLIEiJ_G0024919)	Actl6a (MGP_CAROLIEiJ_G0024920)	Mrpl47 (MGP_CAROLIEiJ_G0024921)	Ndufb5 (MGP_CAROLIEiJ_G0024922)	Usp13 (MGP_CAROLIEiJ_G0024923)	Pex5l (MGP_CAROLIEiJ_G0024924)	Ttc14 (MGP_CAROLIEiJ_G0024925)	Ccdc39 (MGP_CAROLIEiJ_G0024926)	Fxr1 (MGP_CAROLIEiJ_G0024927) #20	MGP_CAROLIEiJ_G0024928 ##21	Sox2 (MGP_CAROLIEiJ_G0024929) #22	Atp11b (MGP_CAROLIEiJ_G0024930) #23	MGP_CAROLIEiJ_G0024931 #24	Mccc1 (MGP_CAROLIEiJ_G0024932) #25	MGP_CAROLIEiJ_G0024933	MGP_CAROLIEiJ_G0024934	Zfp267 (MGP_CAROLIEiJ_G0024935)	Qrfpr (MGP_CAROLIEiJ_G0024936)	Anxa5 (MGP_CAROLIEiJ_G0024937)	MGP_CAROLIEiJ_G0024938	Exosc9 (MGP_CAROLIEiJ_G0024939)	Ccna2 (MGP_CAROLIEiJ_G0024940)	Bbs7 (MGP_CAROLIEiJ_G0024941)	Trpc3 (MGP_CAROLIEiJ_G0024942)	Bltp1 (MGP_CAROLIEiJ_G0024943)	Adad1 (MGP_CAROLIEiJ_G0024944)
Mus_B	ANCESTRAL SPECIES	8	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837.y	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT00860000136163	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487	ENSGT00940000156842
Mouse	MODERN SPECIES	12	Zmat3 (ENSMUSG00000027663)	Pik3ca (ENSMUSG00000027665)	Kcnmb3 (ENSMUSG00000091091)	Zfp639 (ENSMUSG00000027667)	Mfn1 (ENSMUSG00000027668)	Gnb4 (ENSMUSG00000027669)	Actl6a (ENSMUSG00000027671)	Mrpl47 (ENSMUSG00000037531)	Ndufb5 (ENSMUSG00000027673)	Usp13 (ENSMUSG00000056900)	Pex5l (ENSMUSG00000027674)	Ttc14 (ENSMUSG00000027677)	Ccdc39 (ENSMUSG00000027676)	Fxr1 (ENSMUSG00000027680) #20	Dnajc19 (ENSMUSG00000027679) ##21	Sox2 (ENSMUSG00000074637) #22	Atp11b (ENSMUSG00000037400) #23	Dcun1d1 (ENSMUSG00000027708) #24	Mccc1 (ENSMUSG00000027709) #25	Ccdc144b (ENSMUSG00000047696)	Acad9 (ENSMUSG00000027710)	Zfp267 (ENSMUSG00000033883)	Qrfpr (ENSMUSG00000058400)	Anxa5 (ENSMUSG00000027712)	1810062G17Rik (ENSMUSG00000027713)	Smim43 (ENSMUSG00000085007)	Exosc9 (ENSMUSG00000027714)	Ccna2 (ENSMUSG00000027715)	Bbs7 (ENSMUSG00000037325)	Trpc3 (ENSMUSG00000027716)	Bltp1 (ENSMUSG00000037270)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837.y	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C	ENSGT00940000155988	ENSGT00860000136163	ENSGT01010000222815	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487	ENSGT00940000156842
spretus	MODERN SPECIES	12	Zmat3 (MGP_SPRETEiJ_G0025848)	Pik3ca (MGP_SPRETEiJ_G0025849)	Kcnmb3 (MGP_SPRETEiJ_G0025850)	Zfp639 (MGP_SPRETEiJ_G0025851)	Mfn1 (MGP_SPRETEiJ_G0025852)	Gnb4 (MGP_SPRETEiJ_G0025853)	Actl6a (MGP_SPRETEiJ_G0025854)	Mrpl47 (MGP_SPRETEiJ_G0025855)	Ndufb5 (MGP_SPRETEiJ_G0025856)	Usp13 (MGP_SPRETEiJ_G0025857)	Pex5l (MGP_SPRETEiJ_G0025858)	Ttc14 (MGP_SPRETEiJ_G0025859)	Ccdc39 (MGP_SPRETEiJ_G0025860)	Fxr1 (MGP_SPRETEiJ_G0025861) #20	Dnajc19 (MGP_SPRETEiJ_G0025862) ##21	Sox2 (MGP_SPRETEiJ_G0025863) #22	Atp11b (MGP_SPRETEiJ_G0025864) #23	MGP_SPRETEiJ_G0025865 #24	Mccc1 (MGP_SPRETEiJ_G0025866) #25	MGP_SPRETEiJ_G0025867	Acad9 (MGP_SPRETEiJ_G0025868)	Zfp267 (MGP_SPRETEiJ_G0025869)	Qrfpr (MGP_SPRETEiJ_G0025870)	Anxa5 (MGP_SPRETEiJ_G0025871)	MGP_SPRETEiJ_G0025872	Exosc9 (MGP_SPRETEiJ_G0025873)	Ccna2 (MGP_SPRETEiJ_G0025874)	Bbs7 (MGP_SPRETEiJ_G0025875)	Trpc3 (MGP_SPRETEiJ_G0025876)	MGP_SPRETEiJ_G0025877	MGP_SPRETEiJ_G0025878
Shrew mouse	MODERN SPECIES	17	Kcnmb2 (MGP_PahariEiJ_G0026358)	Zmat3 (MGP_PahariEiJ_G0026359)	Pik3ca (MGP_PahariEiJ_G0026360)	Kcnmb3 (MGP_PahariEiJ_G0026361)	Zfp639 (MGP_PahariEiJ_G0026362)	Mfn1 (MGP_PahariEiJ_G0026363)	Gnb4 (MGP_PahariEiJ_G0026364)	Actl6a (MGP_PahariEiJ_G0026365)	Mrpl47 (MGP_PahariEiJ_G0026366)	Ndufb5 (MGP_PahariEiJ_G0026367)	Usp13 (MGP_PahariEiJ_G0026368)	Pex5l (MGP_PahariEiJ_G0026369)	MGP_PahariEiJ_G0026370	Fxr1 (MGP_PahariEiJ_G0026371) #20	Dnajc19 (MGP_PahariEiJ_G0026372) ##21	Sox2 (MGP_PahariEiJ_G0026373) #22	MGP_PahariEiJ_G0026374 #24	Zfp267 (MGP_PahariEiJ_G0026375)	Qrfpr (MGP_PahariEiJ_G0026376)	Anxa5 (MGP_PahariEiJ_G0026377)	MGP_PahariEiJ_G0026378	Exosc9 (MGP_PahariEiJ_G0026379)	Ccna2 (MGP_PahariEiJ_G0026380)	Bbs7 (MGP_PahariEiJ_G0026381)	Trpc3 (MGP_PahariEiJ_G0026382)	Bltp1 (MGP_PahariEiJ_G0026383)	Adad1 (MGP_PahariEiJ_G0026384)	Il2 (MGP_PahariEiJ_G0026385)	Il21 (MGP_PahariEiJ_G0026386)	Cetn4 (MGP_PahariEiJ_G0026387)	Bbs12 (MGP_PahariEiJ_G0026388)
Rat	MODERN SPECIES	11	Zmat3 (ENSRNOG00000063864)	Pik3ca (ENSRNOG00000056371)	Kcnmb3 (ENSRNOG00000027836)	Zfp639 (ENSRNOG00000043053)	Mfn1 (ENSRNOG00000011057)	Gnb4 (ENSRNOG00000011070)	Actl6a (ENSRNOG00000011553)	Mrpl47 (ENSRNOG00000011639)	Ndufb5 (ENSRNOG00000011949)	Usp13 (ENSRNOG00000030639)	Pex5l (ENSRNOG00000011211)	Ttc14 (ENSRNOG00000011261)	Ccdc39 (ENSRNOG00000011440)	Fxr1 (ENSRNOG00000051480) #20	Dnajc19 (ENSRNOG00000049819) ##21	Sox2 (ENSRNOG00000012199) #22	Atp11b (ENSRNOG00000052116) #23	Dcun1d1 (ENSRNOG00000012734) #24	Mccc1 (ENSRNOG00000013293) #25	Ccdc144b (ENSRNOG00000056177)	ENSRNOG00000065565	Acad9 (ENSRNOG00000014178)	Zfp267 (ENSRNOG00000042283)	ENSRNOG00000066024	Arsl (ENSRNOG00000028350)	Qrfpr (ENSRNOG00000014414)	Anxa5 (ENSRNOG00000014453)	Smim43 (ENSRNOG00000070831)	Exosc9 (ENSRNOG00000014674)	Ccna2 (ENSRNOG00000015423)	Bbs7 (ENSRNOG00000015816)
Upper Galilee mountains blind mole rat	MODERN SPECIES	917																Sox2 (ENSNGAG00000002034) #22
Lesser Egyptian jerboa	MODERN SPECIES	47	Zmat3 (ENSJJAG00000004288)	Pik3ca (ENSJJAG00000021453)	Kcnmb3 (ENSJJAG00000023050)	ENSJJAG00000024013	Mfn1 (ENSJJAG00000019731)	ENSJJAG00000023681	Actl6a (ENSJJAG00000017810)	Mrpl47 (ENSJJAG00000020002)	Ndufb5 (ENSJJAG00000012502)	Usp13 (ENSJJAG00000018696)	Pex5l (ENSJJAG00000000620)	ENSJJAG00000023040	Ccdc39 (ENSJJAG00000016989)	Fxr1 (ENSJJAG00000019175) #20	ENSJJAG00000015744 #21	Sox2 (ENSJJAG00000002483) #22	Atp11b (ENSJJAG00000018460) #23	ENSJJAG00000019826 #24	Mccc1 (ENSJJAG00000003543) #25	ENSJJAG00000016856	Ptpdc1 (ENSJJAG00000015386)	Barx1 (ENSJJAG00000012954)	ENSJJAG00000016156	Phf2 (ENSJJAG00000019075)	Fam120a (ENSJJAG00000010692)	Wnk2 (ENSJJAG00000019510)	ENSJJAG00000015723	Card19 (ENSJJAG00000018218)	Susd3 (ENSJJAG00000023422)	Fgd3 (ENSJJAG00000014922)	Bicd2 (ENSJJAG00000015772)
Kangaroo rat	MODERN SPECIES	481																Sox2 (ENSDORG00000007481) #22	Atp11b (ENSDORG00000009378) #23	ENSDORG00000023700 #24	Mccc1 (ENSDORG00000000473) #25	ENSDORG00000000477	B3gnt5 (ENSDORG00000014358) #28	ENSDORG00000000027	Klhl24 (ENSDORG00000025427) #30	Yeats2 (ENSDORG00000014924) #31	Parl (ENSDORG00000014935) #33	Cyp2ab1 (ENSDORG00000026348)	Abcc5 (ENSDORG00000014941)	Eif2b5 (ENSDORG00000005107)	Dvl3 (ENSDORG00000004638)	Ap2m1 (ENSDORG00000004640)	Abcf3 (ENSDORG00000024153)
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b.f ##21	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00510000047568
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.a.a.a ##24	ENSGT00940000156941 #25	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658	ENSGT00730000111453	ENSGT00730000110943.C	ENSGT00940000160853	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000044219	GNB4 (ENSHGLG00000012880)	ACTL6A (ENSHGLG00000013350)	MRPL47 (ENSHGLG00000033799)	NDUFB5 (ENSHGLG00000014377)	USP13 (ENSHGLG00000014472)	PEX5L (ENSHGLG00000016946)	ENSHGLG00000016952	TTC14 (ENSHGLG00000016959)	CCDC39 (ENSHGLG00000016969)	ENSHGLG00000039606	FXR1 (ENSHGLG00000018814) #20	ENSHGLG00000014387 #21	ENSHGLG00000050891	ENSHGLG00000032116	SOX2 (ENSHGLG00000046210) #22	ATP11B (ENSHGLG00000014553) #23	ENSHGLG00000014589 ##24	ENSHGLG00000041896	ENSHGLG00000014650 #25	ENSHGLG00000014676	RPL35A (ENSHGLG00000046416)	IQCG (ENSHGLG00000018834)	LRCH3 (ENSHGLG00000019171)	ENSHGLG00000035747	ENSHGLG00000019355	ENSHGLG00000017149	ENSHGLG00000025225	ENSHGLG00000047329	TNK2 (ENSHGLG00000017162)	Tfrc (ENSHGLG00000017167)
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b.f ##21	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.a.a.a ##24	ENSGT00940000156941 #25	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658	ENSGT00940000160853	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000170892	ENSGT00940000156941 #25	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658	ENSGT00940000160853	ENSGT01030000234598.a.a.a	ENSGT00940000161784	ENSGT00940000160780	ENSGT00940000157384	ENSGT00940000160019
Degu	MODERN SPECIES	244																SOX2 (ENSODEG00000020013) #22	ENSODEG00000013084	ENSODEG00000013066	ENSODEG00000020056	ATP11B (ENSODEG00000014170) #23	ENSODEG00000012228	ENSODEG00000013129 #24	ENSODEG00000020145	ENSODEG00000020304	MCCC1 (ENSODEG00000012286) #25	LMLN (ENSODEG00000013287)	ENSODEG00000012656	IQCG (ENSODEG00000012008)	ENSODEG00000011786	LRCH3 (ENSODEG00000012839)	ENSODEG00000012844
Long-tailed chinchilla	MODERN SPECIES	127	ZMAT3 (ENSCLAG00000013464)	PIK3CA (ENSCLAG00000015135)	KCNMB3 (ENSCLAG00000014741)	ZNF639 (ENSCLAG00000011168)	MFN1 (ENSCLAG00000015912)	GNB4 (ENSCLAG00000015522)	ACTL6A (ENSCLAG00000012251)	ENSCLAG00000015039	ENSCLAG00000014903	USP13 (ENSCLAG00000015308)	PEX5L (ENSCLAG00000014042)	TTC14 (ENSCLAG00000013302)	CCDC39 (ENSCLAG00000012683)	FXR1 (ENSCLAG00000014182) #20	DNAJC19 (ENSCLAG00000011246) #21	SOX2 (ENSCLAG00000017978) #22	ATP11B (ENSCLAG00000012551) #23	ENSCLAG00000014207	MCCC1 (ENSCLAG00000014174) #25	LMLN (ENSCLAG00000011520)	ENSCLAG00000012348	IQCG (ENSCLAG00000013851)	LRCH3 (ENSCLAG00000015543)	ENSCLAG00000012210	RUBCN (ENSCLAG00000013495)	TNK2 (ENSCLAG00000012555)	TFRC (ENSCLAG00000014371)	ZDHHC19 (ENSCLAG00000010728)	SLC51A (ENSCLAG00000011171)	PCYT1A (ENSCLAG00000011331)	DYNLT2B (ENSCLAG00000014593)
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980.k	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00510000047568
Marmotini	ANCESTRAL SPECIES	59	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980.k	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000161734 #27
Alpin marmot	MODERN SPECIES	37	GNB4 (ENSMMMG00000004203)	ACTL6A (ENSMMMG00000004175)	MRPL47 (ENSMMMG00000004133)	ENSMMMG00000004120	NDUFB5 (ENSMMMG00000004098)	USP13 (ENSMMMG00000004025)	PEX5L (ENSMMMG00000003637)	ENSMMMG00000003599	ENSMMMG00000003524	ENSMMMG00000003512	CCDC39 (ENSMMMG00000003487)	ENSMMMG00000003471	FXR1 (ENSMMMG00000003158) #20	ENSMMMG00000003137 ##21	ENSMMMG00000003124	SOX2 (ENSMMMG00000003111) #22	ENSMMMG00000003075	ATP11B (ENSMMMG00000003020) #23	DCUN1D1 (ENSMMMG00000003003) #24	MCCC1 (ENSMMMG00000002969) #25	ENSMMMG00000002953 #26	B3GNT5 (ENSMMMG00000002941) #28	MCF2L2 (ENSMMMG00000002829) #27	ENSMMMG00000002795	ENSMMMG00000002779
Marmotini_b	ANCESTRAL SPECIES	149	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000015224.c.b.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.k	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000154384.h.b.f ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552.b #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000161734 #27
Squirrel	MODERN SPECIES	166	KCNMB3 (ENSSTOG00000013715)	ZNF639 (ENSSTOG00000001442)	MFN1 (ENSSTOG00000005167)	GNB4 (ENSSTOG00000005210)	ENSSTOG00000033903	ACTL6A (ENSSTOG00000010540)	MRPL47 (ENSSTOG00000032487)	NDUFB5 (ENSSTOG00000010557)	USP13 (ENSSTOG00000002367)	PEX5L (ENSSTOG00000002383)	TTC14 (ENSSTOG00000003827)	ENSSTOG00000003847	ENSSTOG00000011392	FXR1 (ENSSTOG00000010612) #20	ENSSTOG00000011508 ##21	SOX2 (ENSSTOG00000011011) #22	ATP11B (ENSSTOG00000016462) #23	DCUN1D1 (ENSSTOG00000016465) #24	MCCC1 (ENSSTOG00000010361) #25	ENSSTOG00000010372 #26	B3GNT5 (ENSSTOG00000010399) #28	ENSSTOG00000029916	MCF2L2 (ENSSTOG00000010382) #27
Eurasian red squirrel	MODERN SPECIES	1	ENSSVLG00005007788	MFN1 (ENSSVLG00005007726)	GNB4 (ENSSVLG00005007689)	ENSSVLG00005007595	MRPL47 (ENSSVLG00005007505)	ENSSVLG00005007458	USP13 (ENSSVLG00005007303)	ENSSVLG00005007236	PEX5L (ENSSVLG00005006552)	ENSSVLG00005006293	TTC14 (ENSSVLG00005006262)	CCDC39 (ENSSVLG00005006018)	ENSSVLG00005005952	FXR1 (ENSSVLG00005005627) #20	ENSSVLG00005005504 ##21	SOX2 (ENSSVLG00005005486) #22	ENSSVLG00005005467	ATP11B (ENSSVLG00005005419) #23	DCUN1D1 (ENSSVLG00005005371) #24	MCCC1 (ENSSVLG00005005194) #25	ENSSVLG00005005088	ENSSVLG00005005061	B3GNT5 (ENSSVLG00005005047) #28	MCF2L2 (ENSSVLG00005005015) #27	KLHL6 (ENSSVLG00005004948) #29	KLHL24 (ENSSVLG00005004913) #30	YEATS2 (ENSSVLG00005004883) #31	MAP6D1 (ENSSVLG00005004847) #32	PARL (ENSSVLG00005004781) #33	ENSSVLG00005004738	ABCC5 (ENSSVLG00005004668)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000164015	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Cetacea	ANCESTRAL SPECIES	10	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Dolphin	MODERN SPECIES	6355																SOX2 (ENSTTRG00000004853) #22
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00940000155531.b	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000155453.k.b	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00390000018829.g.b.c.a.a	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00390000001413.d	ENSGT00990000211790	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00530000064222.b	ENSGT00390000011854	ENSGT00940000159561	ENSGT00940000158237	ENSGT00950000183050.b.a	ENSGT00390000013544	ENSGT00940000155014	ENSGT00940000154663.q	ENSGT00390000012837	ENSGT00390000006191	ENSGT00390000005665	ENSGT00390000001071	ENSGT00390000008727.a.b	ENSGT00390000012816	ENSGT00910000144250	ENSGT00940000160614 #22	ENSGT00390000018829.g.b.c.a.a	ENSGT00940000156162.C.k #23	ENSGT00390000001413.d	ENSGT00940000154552 #24	ENSGT00990000211790	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a.i #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497
Beluga whale	MODERN SPECIES	111	ZNF639 (ENSDLEG00000014693)	MFN1 (ENSDLEG00000014635)	GNB4 (ENSDLEG00000014597)	ENSDLEG00000014581	ACTL6A (ENSDLEG00000014465)	MRPL47 (ENSDLEG00000014407)	ENSDLEG00000014388	USP13 (ENSDLEG00000014351)	PEX5L (ENSDLEG00000012327)	TTC14 (ENSDLEG00000012062)	CCDC39 (ENSDLEG00000011994)	ENSDLEG00000011974	FXR1 (ENSDLEG00000011932) #20	ENSDLEG00000011911 ##21	ENSDLEG00000011882	SOX2 (ENSDLEG00000011877) #22	ENSDLEG00000011867	ATP11B (ENSDLEG00000011729) #23	ENSDLEG00000011713	DCUN1D1 (ENSDLEG00000011699) #24	ENSDLEG00000011686	ENSDLEG00000011678	MCCC1 (ENSDLEG00000011656) #25	B3GNT5 (ENSDLEG00000011651) #28	LAMP3 (ENSDLEG00000011466) #27	KLHL6 (ENSDLEG00000011412) #29	KLHL24 (ENSDLEG00000011392) #30	YEATS2 (ENSDLEG00000011294) #31	MAP6D1 (ENSDLEG00000011273) #32	PARL (ENSDLEG00000011263) #33	ENSDLEG00000011228
Narwhal	MODERN SPECIES	297	ENSMMNG00015001952	ENSMMNG00015001936	MFN1 (ENSMMNG00015001899)	GNB4 (ENSMMNG00015001871)	ENSMMNG00015001853	ACTL6A (ENSMMNG00015001826)	MRPL47 (ENSMMNG00015001795)	ENSMMNG00015001756	USP13 (ENSMMNG00015001699)	PEX5L (ENSMMNG00015001374)	TTC14 (ENSMMNG00015001171)	CCDC39 (ENSMMNG00015001064)	FXR1 (ENSMMNG00015000882) #20	ENSMMNG00015000810 ##21	ENSMMNG00015000787	SOX2 (ENSMMNG00015000779) #22	ENSMMNG00015000768	ATP11B (ENSMMNG00015000694) #23	ENSMMNG00015000676	DCUN1D1 (ENSMMNG00015000639) #24	ENSMMNG00015000610	MCCC1 (ENSMMNG00015000549) #25	ENSMMNG00015000494 #26	B3GNT5 (ENSMMNG00015000474) #28	MCF2L2 (ENSMMNG00015000373) #27	KLHL6 (ENSMMNG00015000283) #29	ENSMMNG00015000255 #30	YEATS2 (ENSMMNG00015000154) #31	MAP6D1 (ENSMMNG00015004521) #32	PARL (ENSMMNG00015004493) #33	ABCC5 (ENSMMNG00015004426)
Vaquita	MODERN SPECIES	15	ZNF639 (ENSPSNG00000000337)	MFN1 (ENSPSNG00000000400)	GNB4 (ENSPSNG00000000439)	ACTL6A (ENSPSNG00000000482)	ENSPSNG00000000504	MRPL47 (ENSPSNG00000000528)	NDUFB5 (ENSPSNG00000000597)	USP13 (ENSPSNG00000000641)	PEX5L (ENSPSNG00000000991)	ENSPSNG00000001427	TTC14 (ENSPSNG00000001461)	CCDC39 (ENSPSNG00000001552)	ENSPSNG00000001620	FXR1 (ENSPSNG00000001732) #20	ENSPSNG00000001824 ##21	SOX2 (ENSPSNG00000001850) #22	ENSPSNG00000001868	ENSPSNG00000001895	ENSPSNG00000001911 #23	ENSPSNG00000001934 #23	ENSPSNG00000001973 #23	DCUN1D1 (ENSPSNG00000001998) #24	ENSPSNG00000002009	ENSPSNG00000002025	MCCC1 (ENSPSNG00000002070) #25	LAMP3 (ENSPSNG00000002153)	MCF2L2 (ENSPSNG00000002227) #27	B3GNT5 (ENSPSNG00000002266) #28	ENSPSNG00000002280	KLHL6 (ENSPSNG00000002317) #29	KLHL24 (ENSPSNG00000002350) #30
Sperm whale	MODERN SPECIES		PIK3CA (ENSPCTG00005002544)	ZNF639 (ENSPCTG00005002565)	MFN1 (ENSPCTG00005002577)	GNB4 (ENSPCTG00005002602)	ACTL6A (ENSPCTG00005002626)	MRPL47 (ENSPCTG00005002655)	NDUFB5 (ENSPCTG00005002691)	USP13 (ENSPCTG00005002736)	PEX5L (ENSPCTG00005002908)	ENSPCTG00005003697	ENSPCTG00005003702	TTC14 (ENSPCTG00005003714)	CCDC39 (ENSPCTG00005003737)	FXR1 (ENSPCTG00005003785) #20	ENSPCTG00005003919 ##21	SOX2 (ENSPCTG00005003937) #22	ENSPCTG00005003941	ENSPCTG00005003956	ATP11B (ENSPCTG00005004005) #23	ENSPCTG00005005564	DCUN1D1 (ENSPCTG00005005589) #24	ENSPCTG00005005649	MCCC1 (ENSPCTG00005005715) #25	LAMP3 (ENSPCTG00005005882)	MCF2L2 (ENSPCTG00005005943) #27	B3GNT5 (ENSPCTG00005005989) #28	KLHL6 (ENSPCTG00005006059) #29	YEATS2 (ENSPCTG00005006122) #31	MAP6D1 (ENSPCTG00005006390) #32	PARL (ENSPCTG00005006429) #33	ENSPCTG00005006473
Blue whale	MODERN SPECIES	15	CRYGA (ENSBMSG00010003714)	ENSBMSG00010003722	ZNF639 (ENSBMSG00010003730)	MFN1 (ENSBMSG00010003738)	GNB4 (ENSBMSG00010003748)	ENSBMSG00010003758	MRPL47 (ENSBMSG00010003775)	NDUFB5 (ENSBMSG00010003799)	USP13 (ENSBMSG00010003825)	ENSBMSG00010003863	PEX5L (ENSBMSG00010003978)	TTC14 (ENSBMSG00010004833)	CCDC39 (ENSBMSG00010004860)	ENSBMSG00010004914 #20	ENSBMSG00010004956 ##21	SOX2 (ENSBMSG00010004972) #22	ATP11B (ENSBMSG00010006023) #23	DCUN1D1 (ENSBMSG00010006245) #24	ENSBMSG00010006269	ENSBMSG00010006280	MCCC1 (ENSBMSG00010006304) #25	LAMP3 (ENSBMSG00010006362)	MCF2L2 (ENSBMSG00010006391) #27	B3GNT5 (ENSBMSG00010006443) #28	KLHL6 (ENSBMSG00010006477) #29	KLHL24 (ENSBMSG00010006493) #30	YEATS2 (ENSBMSG00010006529) #31	MAP6D1 (ENSBMSG00010006549) #32	ENSBMSG00010006580 #33	ENSBMSG00010006644	ABCC5 (ENSBMSG00010006752)
Pecora	ANCESTRAL SPECIES	8	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Percora_a	ANCESTRAL SPECIES	7	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Bovidae	ANCESTRAL SPECIES	9	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Caprinae	ANCESTRAL SPECIES	8	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000173300	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.b.b
Rambouillet Sheep	MODERN SPECIES		ZMAT3 (ENSOARG00020000075)	PIK3CA (ENSOARG00020010030)	ENSOARG00020009952	ZNF639 (ENSOARG00020009893)	MFN1 (ENSOARG00020009679)	GNB4 (ENSOARG00020009587)	ACTL6A (ENSOARG00020009394)	MRPL47 (ENSOARG00020009272)	NDUFB5 (ENSOARG00020009071)	USP13 (ENSOARG00020008860)	PEX5L (ENSOARG00020007531)	CCDC39 (ENSOARG00020006964)	TTC14 (ENSOARG00020006723)	FXR1 (ENSOARG00020005863) #20	DNAJC19 (ENSOARG00020005775) ##21	SOX2 (ENSOARG00020005758) #22	ENSOARG00020005742	ATP11B (ENSOARG00020005548) #23	DCUN1D1 (ENSOARG00020005500) #24	MCCC1 (ENSOARG00020005367) #25	ENSOARG00020005267 #26	B3GNT5 (ENSOARG00020005246) #28	MCF2L2 (ENSOARG00020005175) #27	KLHL6 (ENSOARG00020005141)	KLHL24 (ENSOARG00020005097) #30	YEATS2 (ENSOARG00020004961) #31	MAP6D1 (ENSOARG00020004912) #32	PARL (ENSOARG00020004881) #33	ABCC5 (ENSOARG00020004748)	ENSOARG00020004672	ENSOARG00020004585
Goat	MODERN SPECIES		ZNF639 (ENSCHIG00000025519)	MFN1 (ENSCHIG00000021326)	GNB4 (ENSCHIG00000011036)	ACTL6A (ENSCHIG00000017016)	MRPL47 (ENSCHIG00000013922)	NDUFB5 (ENSCHIG00000024994)	USP13 (ENSCHIG00000020163)	ENSCHIG00000017176	PEX5L (ENSCHIG00000021885)	TTC14 (ENSCHIG00000013993)	CCDC39 (ENSCHIG00000025334)	ENSCHIG00000002251	ENSCHIG00000025304	FXR1 (ENSCHIG00000017202) #20	ENSCHIG00000022989 ##21	SOX2 (ENSCHIG00000011126) #22	ENSCHIG00000018528	ENSCHIG00000026896	ATP11B (ENSCHIG00000006700) #23	DCUN1D1 (ENSCHIG00000012704) #24	MCCC1 (ENSCHIG00000025794) #25	ENSCHIG00000012113 #26	B3GNT5 (ENSCHIG00000007874) #28	MCF2L2 (ENSCHIG00000012229) #27	ENSCHIG00000023082	KLHL24 (ENSCHIG00000021673) #30	ENSCHIG00000010607	MAP6D1 (ENSCHIG00000017564) #32	YEATS2 (ENSCHIG00000013530) #31	PARL (ENSCHIG00000026220) #33	ABCC5 (ENSCHIG00000024341)
Bovinae	ANCESTRAL SPECIES	6	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000153525.g.b.a.n	ENSGT00940000164015	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
American bison	MODERN SPECIES	3281	ZMAT3 (ENSBBBG00000016883)	PIK3CA (ENSBBBG00000016857)	KCNMB3 (ENSBBBG00000016801)	ZNF639 (ENSBBBG00000016766)	MFN1 (ENSBBBG00000016746)	GNB4 (ENSBBBG00000000725)	ACTL6A (ENSBBBG00000004132)	MRPL47 (ENSBBBG00000016656)	NDUFB5 (ENSBBBG00000016629)	USP13 (ENSBBBG00000016615)	PEX5L (ENSBBBG00000016549)	TTC14 (ENSBBBG00000016091)	CCDC39 (ENSBBBG00000016047)	FXR1 (ENSBBBG00000016010) #20	ENSBBBG00000015808 ##21	SOX2 (ENSBBBG00000015767) #22	ATP11B (ENSBBBG00000015744) #23	DCUN1D1 (ENSBBBG00000002643) #24	MCCC1 (ENSBBBG00000015686) #25	LAMP3 (ENSBBBG00000003901)	MCF2L2 (ENSBBBG00000003450) #27	B3GNT5 (ENSBBBG00000007365) #28	ENSBBBG00000007417	KLHL6 (ENSBBBG00000003863) #29	KLHL24 (ENSBBBG00000003862) #30	ENSBBBG00000015498	YEATS2 (ENSBBBG00000002697) #31	PARL (ENSBBBG00000003851) #33	ENSBBBG00000015445	ENSBBBG00000015439	ABCC5 (ENSBBBG00000015427)
Siberian musk deer	MODERN SPECIES	139	PIK3CA (ENSMMSG00000003505)	KCNMB3 (ENSMMSG00000003476)	ZNF639 (ENSMMSG00000003462)	MFN1 (ENSMMSG00000003440)	GNB4 (ENSMMSG00000003419)	ACTL6A (ENSMMSG00000003389)	MRPL47 (ENSMMSG00000003361)	NDUFB5 (ENSMMSG00000003341)	USP13 (ENSMMSG00000003298)	PEX5L (ENSMMSG00000001803)	TTC14 (ENSMMSG00000001675)	CCDC39 (ENSMMSG00000001595)	ENSMMSG00000001203 #20	ENSMMSG00000001124 ##21	ENSMMSG00000001107	SOX2 (ENSMMSG00000001102) #22	ATP11B (ENSMMSG00000000997) #23	DCUN1D1 (ENSMMSG00000000928) #24	MCCC1 (ENSMMSG00000000836) #25	ENSMMSG00000000791 #26	B3GNT5 (ENSMMSG00000000777) #28	KLHL6 (ENSMMSG00000000728) #29	KLHL24 (ENSMMSG00000000711) #30	YEATS2 (ENSMMSG00000000661) #31	MAP6D1 (ENSMMSG00000000647) #32	PARL (ENSMMSG00000000606) #33	ABCC5 (ENSMMSG00000000523)	ENSMMSG00000000472	ENSMMSG00000000406	ENSMMSG00000000331	HTR3E (ENSMMSG00000000244)
Camelidae	ANCESTRAL SPECIES		ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.g ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b	ENSGT00940000156739.b.b.b
Alpaca	MODERN SPECIES	2305																SOX2 (ENSVPAG00000010334) #22	ATP11B (ENSVPAG00000010336) #23
Suina	ANCESTRAL SPECIES	1	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000163715.a	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000163497	ENSGT00940000155470.b
Pig	MODERN SPECIES	4	ENSSSCG00000031922	ZNF639 (ENSSSCG00000038443)	MFN1 (ENSSSCG00000039285)	GNB4 (ENSSSCG00000037583)	ACTL6A (ENSSSCG00000011762)	MRPL47 (ENSSSCG00000011763)	NDUFB5 (ENSSSCG00000011764)	USP13 (ENSSSCG00000011765)	PEX5L (ENSSSCG00000011766)	TTC14 (ENSSSCG00000011767)	CCDC39 (ENSSSCG00000011768)	FXR1 (ENSSSCG00000011769) #20	DNAJC19 (ENSSSCG00000011770) #21	ENSSSCG00000043321	ENSSSCG00000052379	SOX2 (ENSSSCG00000062993) #22	ENSSSCG00000062332	ENSSSCG00000061239	ENSSSCG00000055503	ATP11B (ENSSSCG00000011772) #23	ENSSSCG00000036881	MCCC1 (ENSSSCG00000025942) #25	MCF2L2 (ENSSSCG00000021749) #27	B3GNT5 (ENSSSCG00000024393) #28	ENSSSCG00000034204	ENSSSCG00000031476	KLHL24 (ENSSSCG00000011775) #30	ENSSSCG00000057693	YEATS2 (ENSSSCG00000011776) #31	MAP6D1 (ENSSSCG00000032328) #32	PARL (ENSSSCG00000033424) #33
Chacoan peccary	MODERN SPECIES	944	KCNMB3 (ENSCWAG00000013862)	ZNF639 (ENSCWAG00000014049)	MFN1 (ENSCWAG00000014074)	GNB4 (ENSCWAG00000014110)	ACTL6A (ENSCWAG00000014148)	MRPL47 (ENSCWAG00000014208)	ENSCWAG00000014342	ENSCWAG00000014364	USP13 (ENSCWAG00000014441)	ENSCWAG00000014493	PEX5L (ENSCWAG00000014594)	TTC14 (ENSCWAG00000018170)	CCDC39 (ENSCWAG00000018221)	FXR1 (ENSCWAG00000010854) #20	DNAJC19 (ENSCWAG00000011201) ##21	SOX2 (ENSCWAG00000011284) #22	ENSCWAG00000011322	ATP11B (ENSCWAG00000011359) #23	DCUN1D1 (ENSCWAG00000011613) #24	MCCC1 (ENSCWAG00000011692) #25	LAMP3 (ENSCWAG00000011926)	MCF2L2 (ENSCWAG00000012097) #27	B3GNT5 (ENSCWAG00000012261) #28	KLHL6 (ENSCWAG00000012291) #29	KLHL24 (ENSCWAG00000012354) #30	ENSCWAG00000012399	YEATS2 (ENSCWAG00000012459) #31	MAP6D1 (ENSCWAG00000012551) #32	PARL (ENSCWAG00000012639) #33	ENSCWAG00000012805	ABCC5 (ENSCWAG00000012877)
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.b.b	ENSGT00940000156739.a
Carnivora	ANCESTRAL SPECIES	10	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000164959	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b
Felidae	ANCESTRAL SPECIES	9	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000172992	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000164959	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.b.b
Panthera	ANCESTRAL SPECIES	12	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000172992	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000164959	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.b.b
Panthera_a	ANCESTRAL SPECIES	17	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00950000182802.B.a.a.a.b.a.b	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00940000172992	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000164959	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000153305.c.f.a
leopard	MODERN SPECIES	41	GNB4 (ENSPPRG00000001295)	ENSPPRG00000022425	ACTL6A (ENSPPRG00000000310)	MRPL47 (ENSPPRG00000000050)	ENSPPRG00000022339	NDUFB5 (ENSPPRG00000023717)	USP13 (ENSPPRG00000023982)	ENSPPRG00000022239	PEX5L (ENSPPRG00000012577)	ENSPPRG00000006521	TTC14 (ENSPPRG00000006127)	CCDC39 (ENSPPRG00000005599)	ENSPPRG00000005376	FXR1 (ENSPPRG00000004943) #20	DNAJC19 (ENSPPRG00000002612) #21	SOX2 (ENSPPRG00000021752) #22	ENSPPRG00000002170	ENSPPRG00000001643	ATP11B (ENSPPRG00000001539) #23	DCUN1D1 (ENSPPRG00000000834) #24	MCCC1 (ENSPPRG00000000127) #25	LAMP3 (ENSPPRG00000023853)	MCF2L2 (ENSPPRG00000024122) #27	B3GNT5 (ENSPPRG00000021466) #28	ENSPPRG00000013180	KLHL6 (ENSPPRG00000011045) #29	KLHL24 (ENSPPRG00000011024) #30	YEATS2 (ENSPPRG00000010510) #31	MAP6D1 (ENSPPRG00000010302) #32	PARL (ENSPPRG00000010103) #33	ABCC5 (ENSPPRG00000009156)
lion	MODERN SPECIES	9	PIK3CA (ENSPLOG00000014416)	KCNMB3 (ENSPLOG00000014563)	ZNF639 (ENSPLOG00000014743)	MFN1 (ENSPLOG00000014785)	GNB4 (ENSPLOG00000014871)	ACTL6A (ENSPLOG00000014922)	MRPL47 (ENSPLOG00000015006)	ENSPLOG00000015221	NDUFB5 (ENSPLOG00000015246)	USP13 (ENSPLOG00000015359)	PEX5L (ENSPLOG00000015604)	TTC14 (ENSPLOG00000016608)	CCDC39 (ENSPLOG00000016889)	ENSPLOG00000017262 #20	DNAJC19 (ENSPLOG00000017942) #21	SOX2 (ENSPLOG00000018057) #22	ENSPLOG00000018071	ATP11B (ENSPLOG00000018137) #23	DCUN1D1 (ENSPLOG00000018397) #24	MCCC1 (ENSPLOG00000018464) #25	LAMP3 (ENSPLOG00000018830)	MCF2L2 (ENSPLOG00000018925) #27	B3GNT5 (ENSPLOG00000019335) #28	ENSPLOG00000019346	MB21D2 (ENSPLOG00000019380)	FGF12 (ENSPLOG00000019425)	ENSPLOG00000019518	CCDC50 (ENSPLOG00000019549)	UTS2B (ENSPLOG00000019582)	OSTN (ENSPLOG00000019626)	GMNC (ENSPLOG00000019676)
Caniformia	ANCESTRAL SPECIES		ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00960000193213	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000164959	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00390000006548.b.j.b	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.z	ENSGT00940000157401	ENSGT00960000193213	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000164959	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00390000006548.b.j.b	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b
Mustelinae	ANCESTRAL SPECIES	20	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.z	ENSGT00940000157401	ENSGT00960000193213	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000154502.`b.b.b	ENSGT00940000160614 #22	ENSGT00940000164959	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000154345.b #29	ENSGT00390000006548.b.j.b	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
American mink	MODERN SPECIES	118	KCNMB3 (ENSNVIG00000018086)	ZNF639 (ENSNVIG00000018071)	MFN1 (ENSNVIG00000018002)	GNB4 (ENSNVIG00000017705)	ACTL6A (ENSNVIG00000017593)	MRPL47 (ENSNVIG00000017553)	NDUFB5 (ENSNVIG00000017522)	USP13 (ENSNVIG00000017445)	ENSNVIG00000017429	E9PH97 (ENSNVIG00000016959)	TTC14 (ENSNVIG00000016897)	CCDC39 (ENSNVIG00000016850)	FXR1 (ENSNVIG00000016628) #20	ENSNVIG00000016582 #21	ENSNVIG00000016571	SOX2 (ENSNVIG00000016538) #22	ENSNVIG00000016527	ATP11B (ENSNVIG00000016435) #23	DCUN1D1 (ENSNVIG00000016385) #24	MCCA (ENSNVIG00000016260) #25	LAMP3 (ENSNVIG00000016242)	B3GNT5 (ENSNVIG00000016238) #28	ENSNVIG00000016235	MF2L2 (ENSNVIG00000016107) #27	KLHL6 (ENSNVIG00000016052) #29	ENSNVIG00000016043	KLH24 (ENSNVIG00000016026) #30	YEATS2 (ENSNVIG00000015940) #31	MAP6D1 (ENSNVIG00000015917) #32	PARL (ENSNVIG00000015862) #33	ABCC5 (ENSNVIG00000015808)
Ursidae	ANCESTRAL SPECIES	1	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.z	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b.kb	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.b.b
Giant Panda	MODERN SPECIES		ZMAT3 (ENSAMEG00000010742)	PIK3CA (ENSAMEG00000010753)	KCNMB3 (ENSAMEG00000010807)	ZNF639 (ENSAMEG00000010809)	MFN1 (ENSAMEG00000010816)	GNB4 (ENSAMEG00000010842)	ACTL6A (ENSAMEG00000010856)	MRPL47 (ENSAMEG00000010876)	NDUFB5 (ENSAMEG00000023963)	USP13 (ENSAMEG00000010896)	PEX5L (ENSAMEG00000010981)	TTC14 (ENSAMEG00000011013)	CCDC39 (ENSAMEG00000011032)	FXR1 (ENSAMEG00000012185) #20	ENSAMEG00000029101	Sox2 (ENSAMEG00000011029) #22	ATP11B (ENSAMEG00000015884) #23	DCUN1D1 (ENSAMEG00000015937) #24	MCCC1 (ENSAMEG00000015967) #25	LAMP3 (ENSAMEG00000015997)	B3GNT5 (ENSAMEG00000019887) #28	KLHL6 (ENSAMEG00000017427) #27	KLHL24 (ENSAMEG00000017409) #30	YEATS2 (ENSAMEG00000017390) #31	MAP6D1 (ENSAMEG00000017388) #32	PARL (ENSAMEG00000017375) #33	ABCC5 (ENSAMEG00000017331)	ENSAMEG00000017325	ENSAMEG00000028286	ENSAMEG00000028299	ENSAMEG00000017308
Ursus	ANCESTRAL SPECIES	22	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.z	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b.kb	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.b.b
Polar bear	MODERN SPECIES	270	PIK3CA (ENSUMAG00000007616)	KCNMB3 (ENSUMAG00000007593)	ZNF639 (ENSUMAG00000007588)	MFN1 (ENSUMAG00000007570)	GNB4 (ENSUMAG00000007558)	ACTL6A (ENSUMAG00000007556)	MRPL47 (ENSUMAG00000007554)	NDUFB5 (ENSUMAG00000007550)	USP13 (ENSUMAG00000007534)	PEX5L (ENSUMAG00000007206)	ENSUMAG00000007106	ENSUMAG00000007101	CCDC39 (ENSUMAG00000007079)	FXR1 (ENSUMAG00000007061) #20	ENSUMAG00000007051 #21	SOX2 (ENSUMAG00000007022) #22	ATP11B (ENSUMAG00000006982) #23	DCUN1D1 (ENSUMAG00000006934) #24	MCCC1 (ENSUMAG00000006927) #25	LAMP3 (ENSUMAG00000006918)	B3GNT5 (ENSUMAG00000006915) #28	ENSUMAG00000006910	MCF2L2 (ENSUMAG00000006845) #27	KLHL6 (ENSUMAG00000006797) #29	KLHL24 (ENSUMAG00000006792) #30	YEATS2 (ENSUMAG00000006587) #31	PARL (ENSUMAG00000006500) #33	ENSUMAG00000006485	ENSUMAG00000006482	ENSUMAG00000006476	ENSUMAG00000006466
American black bear	MODERN SPECIES	5197																SOX2 (ENSUAMG00000018369) #22
Canidae	ANCESTRAL SPECIES	43	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.w	ENSGT00940000157401	ENSGT00960000193213	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000164959	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000154345.b #29	ENSGT00390000006548.b.j.b	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a
Canis_lupus	ANCESTRAL SPECIES	41	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.w	ENSGT00940000157401	ENSGT00960000193213	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000154345.b #29	ENSGT00390000006548.b.j.b	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.b.b
Dingo	MODERN SPECIES	159	ZNF639 (ENSCAFG00020023113)	MFN1 (ENSCAFG00020023114)	GNB4 (ENSCAFG00020023115)	ACTL6A (ENSCAFG00020023126)	MRPL47 (ENSCAFG00020023127)	ENSCAFG00020023129	ENSCAFG00020023130	ENSCAFG00020023131	USP13 (ENSCAFG00020023133)	ENSCAFG00020023137	PEX5L (ENSCAFG00020023148)	TTC14 (ENSCAFG00020023505)	CCDC39 (ENSCAFG00020023514)	FXR1 (ENSCAFG00020023527) #20	ENSCAFG00020023532 #21	SOX2 (ENSCAFG00020023541) #22	ENSCAFG00020023545	ATP11B (ENSCAFG00020000213) #23	DCUN1D1 (ENSCAFG00020000986) #24	MCCC1 (ENSCAFG00020001000) #25	ENSCAFG00020001021 #26	MCF2L2 (ENSCAFG00020001083) #27	B3GNT5 (ENSCAFG00020001231) #28	KLHL6 (ENSCAFG00020001252) #29	ENSCAFG00020001264	KLHL24 (ENSCAFG00020001271) #30	YEATS2 (ENSCAFG00020001349) #31	MAP6D1 (ENSCAFG00020002085) #32	PARL (ENSCAFG00020002113) #33	ENSCAFG00020002122	ENSCAFG00020002167
Red fox	MODERN SPECIES	63	ZNF639 (ENSVVUG00000004762)	MFN1 (ENSVVUG00000004780)	GNB4 (ENSVVUG00000004802)	ACTL6A (ENSVVUG00000004812)	MRPL47 (ENSVVUG00000004837)	NDUFB5 (ENSVVUG00000004849)	USP13 (ENSVVUG00000004881)	PEX5L (ENSVVUG00000004951)	TTC14 (ENSVVUG00000006305)	CCDC39 (ENSVVUG00000006637)	ENSVVUG00000006654	FXR1 (ENSVVUG00000006660) #20	DNAJC19 (ENSVVUG00000006684) #21	ENSVVUG00000006699	ENSVVUG00000006706	SOX2 (ENSVVUG00000006730) #22	ENSVVUG00000006736	ATP11B (ENSVVUG00000006763) #23	DCUN1D1 (ENSVVUG00000006826) #24	MCCC1 (ENSVVUG00000006835) #25	ENSVVUG00000006851 #26	MCF2L2 (ENSVVUG00000006872) #27	B3GNT5 (ENSVVUG00000006884) #28	KLHL6 (ENSVVUG00000006905) #29	ENSVVUG00000006913	KLHL24 (ENSVVUG00000006919) #30	YEATS2 (ENSVVUG00000006927) #31	PARL (ENSVVUG00000006999) #33	ABCC5 (ENSVVUG00000007021)	HTR3D (ENSVVUG00000007131)	ENSVVUG00000007148
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.b.b	ENSGT00940000156739.a
Equus	ANCESTRAL SPECIES	19	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000163715.a	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.a	ENSGT00940000163899
Horse	MODERN SPECIES	10	ZNF639 (ENSECAG00000015691)	MFN1 (ENSECAG00000018551)	GNB4 (ENSECAG00000008196)	ACTL6A (ENSECAG00000013622)	MRPL47 (ENSECAG00000018545)	NDUFB5 (ENSECAG00000000682)	USP13 (ENSECAG00000004152)	PEX5L (ENSECAG00000006506)	ENSECAG00000057496	TTC14 (ENSECAG00000014616)	CCDC39 (ENSECAG00000021390)	FXR1 (ENSECAG00000007560) #20	ENSECAG00000034995	DNAJC19 (ENSECAG00000009331) #21	ENSECAG00000051089	SOX2 (ENSECAG00000010653) #22	ATP11B (ENSECAG00000016912) #23	ENSECAG00000045511	DCUN1D1 (ENSECAG00000021365) #24	MCCC1 (ENSECAG00000008214) #25	LAMP3 (ENSECAG00000008113) #26	MCF2L2 (ENSECAG00000008905) #27	B3GNT5 (ENSECAG00000001863) #28	ENSECAG00000049566	KLHL6 (ENSECAG00000016531)	KLHL24 (ENSECAG00000021066) #30	YEATS2 (ENSECAG00000008585) #31	MAP6D1 (ENSECAG00000022418) #32	PARL (ENSECAG00000022422) #33	ABCC5 (ENSECAG00000007961)	ENSECAG00000034302
Donkey	MODERN SPECIES	25	ZMAT3 (ENSEASG00005016887)	PIK3CA (ENSEASG00005016884)	ENSEASG00005016880	ZNF639 (ENSEASG00005016879)	MFN1 (ENSEASG00005016871)	GNB4 (ENSEASG00005016867)	ACTL6A (ENSEASG00005016862)	MRPL47 (ENSEASG00005016858)	NDUFB5 (ENSEASG00005016854)	USP13 (ENSEASG00005016850)	PEX5L (ENSEASG00005016845)	TTC14 (ENSEASG00005016838)	CCDC39 (ENSEASG00005016830)	FXR1 (ENSEASG00005016818) #20	DNAJC19 (ENSEASG00005016812) #21	SOX2 (ENSEASG00005038258) #22	ATP11B (ENSEASG00005016115) #23	DCUN1D1 (ENSEASG00005016038) #24	MCCC1 (ENSEASG00005015339) #25	ENSEASG00005015308 #26	MCF2L2 (ENSEASG00005015300) #27	B3GNT5 (ENSEASG00005038666) #28	ENSEASG00005028355	ENSEASG00005015289	KLHL24 (ENSEASG00005015287) #30	YEATS2 (ENSEASG00005015265) #31	MAP6D1 (ENSEASG00005026951) #32	PARL (ENSEASG00005015210) #33	ABCC5 (ENSEASG00005014831)	ENSEASG00005029101	ENSEASG00005014738
Chiroptera	ANCESTRAL SPECIES	13	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941.h #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.b.b	ENSGT00510000047568
Microchiroptera	ANCESTRAL SPECIES	11	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941.h #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000154345.b #29	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a	ENSGT00940000156739.b.b.b	ENSGT00510000047568
Microbat	MODERN SPECIES	951	PIK3CA (ENSMLUG00000009229)	KCNMB3 (ENSMLUG00000009263)	ZNF639 (ENSMLUG00000007597)	MFN1 (ENSMLUG00000007603)	GNB4 (ENSMLUG00000007640)	ACTL6A (ENSMLUG00000024899)	MRPL47 (ENSMLUG00000000996)	NDUFB5 (ENSMLUG00000000999)	USP13 (ENSMLUG00000013714)	PEX5L (ENSMLUG00000011630)	ENSMLUG00000028182	TTC14 (ENSMLUG00000010448)	CCDC39 (ENSMLUG00000010487)	FXR1 (ENSMLUG00000006840) #20	ENSMLUG00000006865 #21	SOX2 (ENSMLUG00000013015) #22	ENSMLUG00000006369	ATP11B (ENSMLUG00000000492) #23	DCUN1D1 (ENSMLUG00000012251) #24	MCCC1 (ENSMLUG00000012257) #25	LAMP3 (ENSMLUG00000012272)	B3GNT5 (ENSMLUG00000017017) #28	MCF2L2 (ENSMLUG00000017007) #27	KLHL6 (ENSMLUG00000005156) #29	KLHL24 (ENSMLUG00000005165) #30	YEATS2 (ENSMLUG00000004493) #31	ENSMLUG00000027253 #32	PARL (ENSMLUG00000004507) #33	ABCC5 (ENSMLUG00000010786)	ENSMLUG00000010854	ENSMLUG00000027954
Atlantogenata	ANCESTRAL SPECIES	19	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000154384.h.b ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a.b	ENSGT00940000156739.b.b.a.a
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000160614 #22
Armadillo	MODERN SPECIES	3678												TTC14 (ENSDNOG00000000730)	CCDC39 (ENSDNOG00000000732)	ENSDNOG00000019065 #20	ENSDNOG00000044604	SOX2 (ENSDNOG00000019903) #22	ENSDNOG00000049028	ENSDNOG00000048698	ENSDNOG00000038305	ATP11B (ENSDNOG00000013502) #23
Afrotheria	ANCESTRAL SPECIES	17						ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000154384.h.b ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a.b	ENSGT00940000156739.b.b.a.a
Tenrec	MODERN SPECIES	16819																SOX2 (ENSETEG00000006366) #22
Afrotheria_a	ANCESTRAL SPECIES	16						ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.a #21	ENSGT00940000154384.h.b ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00940000163715.a	ENSGT00940000154345.a #30	ENSGT00940000156789 #31	ENSGT00530000063947.B #32	ENSGT00390000013063 #33	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a.b	ENSGT00940000156739.b.b.a.a
Hyrax	MODERN SPECIES	10160																SOX2 (ENSPCAG00000003690) #22
Elephant	MODERN SPECIES	261						MFN1 (ENSLAFG00000008856)	ACTL6A (ENSLAFG00000013530)	MRPL47 (ENSLAFG00000018470)	NDUFB5 (ENSLAFG00000022619)	USP13 (ENSLAFG00000015504)	PEX5L (ENSLAFG00000015513)	TTC14 (ENSLAFG00000013418)	CCDC39 (ENSLAFG00000013426)	FXR1 (ENSLAFG00000001908) #20	ENSLAFG00000001910 ##21	SOX2 (ENSLAFG00000006096) #22	ATP11B (ENSLAFG00000010151) #23	DCUN1D1 (ENSLAFG00000016514) #24	MCCC1 (ENSLAFG00000018018) #25	LAMP3 (ENSLAFG00000022746)	B3GNT5 (ENSLAFG00000000374) #28	ENSLAFG00000000369 #27	ENSLAFG00000008616	KLHL24 (ENSLAFG00000008621) #30	YEATS2 (ENSLAFG00000010347) #31	ENSLAFG00000031362 #32	PARL (ENSLAFG00000010360) #33	ABCC5 (ENSLAFG00000003077)	HTR3D (ENSLAFG00000003080)	ENSLAFG00000003081	EIF2B5 (ENSLAFG00000014782)
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00940000161405.u	ENSGT00940000155975	ENSGT00940000158290	ENSGT01060000248592.E	ENSGT01060000248592.B	ENSGT01060000248592.D	ENSGT01060000248592.C
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.j	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b ##21	ENSGT00940000160614 #22	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00940000161405.u	ENSGT00940000161405.v	ENSGT00940000158290	ENSGT01060000248592.E	ENSGT01060000248592.B	ENSGT01060000248592.D	ENSGT01060000248592.C
Diprotodontia	ANCESTRAL SPECIES	17	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.j	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b ##21	ENSGT00940000160614 #22	ENSGT00940000161383.f	ENSGT00390000003897.s.b.d.a	ENSGT00530000063687.b.b.b.h	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00940000161405.u	ENSGT00940000161405.v	ENSGT00940000158290	ENSGT01060000248592.E
Diprotodontia_a	ANCESTRAL SPECIES	19	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.j	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.h.b ##21	ENSGT00940000160614 #22	ENSGT00940000161383.f	ENSGT00390000003897.s.b.d.a	ENSGT00530000063687.b.b.b.h	ENSGT00940000156162.C.k #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00940000161405.u	ENSGT00940000161405.v	ENSGT00940000158290	ENSGT01060000248592.E
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1046	PIK3CA (ENSVURG00010012578)	KCNMB3 (ENSVURG00010012570)	ZNF639 (ENSVURG00010012565)	MFN1 (ENSVURG00010012549)	GNB4 (ENSVURG00010012529)	ACTL6A (ENSVURG00010012511)	MRPL47 (ENSVURG00010012499)	NDUFB5 (ENSVURG00010012488)	USP13 (ENSVURG00010012461)	PEX5L (ENSVURG00010012070)	ENSVURG00010012046	ENSVURG00010012039	CCDC39 (ENSVURG00010012026)	FXR1 (ENSVURG00010011990) #20	ENSVURG00010011974 ##21	SOX2 (ENSVURG00010011967) #22	ENSVURG00010011959	ATP11B (ENSVURG00010011883) #23	DCUN1D1 (ENSVURG00010011851) #24	MCCC1 (ENSVURG00010011829) #25	ENSVURG00010011796	B3GNT5 (ENSVURG00010011785) #28	ENSVURG00010011573 #27	RFC4 (ENSVURG00010011519)	EIF4A2 (ENSVURG00010011484)	ENSVURG00010011472	ENSVURG00010011466	IGSF10 (ENSVURG00010011446)	P2RY12 (ENSVURG00010011440)	P2RY13 (ENSVURG00010011436)	GPR87 (ENSVURG00010011434)
Common wonbat	DUPLICATION
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	992																ENSVURG00010008971 #22
Common wonbat	MODERN SPECIES	240																ENSVURG00010002681 #22
Common wonbat	MODERN SPECIES	150																ENSVURG00010013526 #22	ENSVURG00010013581	ENSVURG00010014903	ENSVURG00010014913	ENSVURG00010014919	ENSVURG00010014931
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	22														ENSSHAG00000030987	ENSSHAG00000020999	ENSSHAG00000022979 #22	ENSSHAG00000031194	ENSSHAG00000003963
Tasmanian devil	MODERN SPECIES	2	ZMAT3 (ENSSHAG00000016154)	PIK3CA (ENSSHAG00000016406)	KCNMB3 (ENSSHAG00000016520)	ZNF639 (ENSSHAG00000016769)	MFN1 (ENSSHAG00000016834)	GNB4 (ENSSHAG00000016950)	ACTL6A (ENSSHAG00000017237)	MRPL47 (ENSSHAG00000017273)	NDUFB5 (ENSSHAG00000021190)	USP13 (ENSSHAG00000017431)	PEX5L (ENSSHAG00000017604)	TTC14 (ENSSHAG00000018408)	CCDC39 (ENSSHAG00000018433)	FXR1 (ENSSHAG00000018625) #20	ENSSHAG00000018671 ##21	SOX2 (ENSSHAG00000020580) #22	ATP11B (ENSSHAG00000015543) #23	DCUN1D1 (ENSSHAG00000015925) #24	MCCC1 (ENSSHAG00000016104) #25	ENSSHAG00000016243 #26	ENSSHAG00000016433 #27	ENSSHAG00000031434 #28	ENSSHAG00000017071	ENSSHAG00000017081	ENSSHAG00000023713	ENSSHAG00000017283	IGSF10 (ENSSHAG00000017493)	ENSSHAG00000017538	P2RY12 (ENSSHAG00000022919)	P2RY13 (ENSSHAG00000020463)	GPR87 (ENSSHAG00000017694)
Sauria	ANCESTRAL SPECIES	9	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C	ENSGT00940000165367
Archelosauria	ANCESTRAL SPECIES	11	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Archosauria	ANCESTRAL SPECIES	10	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Aves	ANCESTRAL SPECIES	13	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Neognathae	ANCESTRAL SPECIES	9	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Neognathae_b	ANCESTRAL SPECIES	11	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Passeriformes	ANCESTRAL SPECIES	9	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Passeriformes_d	ANCESTRAL SPECIES	10	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Flycatcher	MODERN SPECIES	28	KCNMB2 (ENSFALG00000008411)	ZMAT3 (ENSFALG00000008403)	PIK3CA (ENSFALG00000008395)	ZNF639 (ENSFALG00000027836)	MFN1 (ENSFALG00000008386)	GNB4 (ENSFALG00000008376)	ACTL6A (ENSFALG00000008369)	MRPL47 (ENSFALG00000008365)	NDUFB5 (ENSFALG00000025849)	USP13 (ENSFALG00000008348)	PEX5L (ENSFALG00000008333)	TTC14 (ENSFALG00000008319)	CCDC39 (ENSFALG00000008311)	FXR1 (ENSFALG00000008301) #20	DNAJC19 (ENSFALG00000008296) #21	SOX2 (ENSFALG00000014383) #22	ATP11B (ENSFALG00000008284) #23	MCCC1 (ENSFALG00000008252) #25	ENSFALG00000027817	ENSFALG00000024579 #26	B3GNT5 (ENSFALG00000015298) #28	ENSFALG00000023180	ENSFALG00000024403	ENSFALG00000023627	MCF2L2 (ENSFALG00000008239) #27	RFC4 (ENSFALG00000008236)	EIF4A2 (ENSFALG00000008230)	KNG1 (ENSFALG00000008226)	HRG (ENSFALG00000024279)	ENSFALG00000023943	AHSG (ENSFALG00000008201)
Passeriformes_g	ANCESTRAL SPECIES	11	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Medium ground finch	MODERN SPECIES	12	KCNMB2 (ENSGFOG00000007709)	ZMAT3 (ENSGFOG00000007697)	PIK3CA (ENSGFOG00000007668)	ZNF639 (ENSGFOG00000007659)	MFN1 (ENSGFOG00000007632)	GNB4 (ENSGFOG00000007624)	ACTL6A (ENSGFOG00000007543)	MRPL47 (ENSGFOG00000007503)	NDUFB5 (ENSGFOG00000007487)	USP13 (ENSGFOG00000007465)	PEX5L (ENSGFOG00000007428)	ENSGFOG00000007366	CCDC39 (ENSGFOG00000007337)	FXR1 (ENSGFOG00000005246) #20	DNAJC19 (ENSGFOG00000005157) #21	SOX2 (ENSGFOG00000005149) #22	ENSGFOG00000005136	ATP11B (ENSGFOG00000005085) #23	DCUN1D1 (ENSGFOG00000005071) #24	MCCC1 (ENSGFOG00000005054) #25	ENSGFOG00000005046 #26	B3GNT5 (ENSGFOG00000005034) #28	ENSGFOG00000005025	MCF2L2 (ENSGFOG00000003022) #27	RFC4 (ENSGFOG00000002865)	EIF4A2 (ENSGFOG00000002798)	ENSGFOG00000002611	ENSGFOG00000013773	AHSG (ENSGFOG00000013759)	SENP5 (ENSGFOG00000013749)	EPHB3 (ENSGFOG00000013742)
Galloanserae	ANCESTRAL SPECIES	16	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000161734 #27	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Phasianidae	ANCESTRAL SPECIES	9	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.e #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000161734 #27	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Phasianidae_b	ANCESTRAL SPECIES	12	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384.e #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00990000203899	ENSGT00940000161734 #27	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Chicken	MODERN SPECIES	38	KCNMB2 (ENSGALG00010018349)	ZMAT3 (ENSGALG00010018317)	PIK3CA (ENSGALG00010018296)	ZNF639 (ENSGALG00010018275)	MFN1 (ENSGALG00010018255)	GNB4 (ENSGALG00010018185)	ACTL6A (ENSGALG00010018172)	MRPL47 (ENSGALG00010018143)	NDUFB5 (ENSGALG00010018137)	USP13 (ENSGALG00010018123)	PEX5L (ENSGALG00010018055)	TTC14 (ENSGALG00010018039)	CCDC39 (ENSGALG00010018026)	FXR1 (ENSGALG00010016652) #20	DNAJC19 (ENSGALG00010016614) #21	SOX2 (ENSGALG00010016609) #22	ATP11B (ENSGALG00010016588) #23	DCUN1D1 (ENSGALG00010016529) #24	MCCC1 (ENSGALG00010016475) #25	LAMP3 (ENSGALG00010016456) #26	B3GNT5 (ENSGALG00010016431) #28	MCF2L2 (ENSGALG00010016355) #27	RFC4 (ENSGALG00010016270)	EIF4A2 (ENSGALG00010016240)	KNG1 (ENSGALG00010016206)	ENSGALG00010016177	FETUB (ENSGALG00010016119)	AHSG (ENSGALG00010016067)	ENSGALG00010016041	EPHB3 (ENSGALG00010016022)	POLR2H (ENSGALG00010015987)
Turkey	MODERN SPECIES	1049																ENSMGAG00000022353 #22
Japanese quail	MODERN SPECIES	27	KCNMB2 (ENSCJPG00005014256)	ZMAT3 (ENSCJPG00005014255)	PIK3CA (ENSCJPG00005014254)	ZNF639 (ENSCJPG00005014253)	MFN1 (ENSCJPG00005014252)	GNB4 (ENSCJPG00005014251)	ACTL6A (ENSCJPG00005014250)	MRPL47 (ENSCJPG00005014249)	NDUFB5 (ENSCJPG00005014248)	USP13 (ENSCJPG00005014247)	PEX5L (ENSCJPG00005014246)	TTC14 (ENSCJPG00005014245)	CCDC39 (ENSCJPG00005014244)	FXR1 (ENSCJPG00005014242) #20	DNAJC19 (ENSCJPG00005014236) #21	SOX2 (ENSCJPG00005014232) #22	ATP11B (ENSCJPG00005014227) #23	DCUN1D1 (ENSCJPG00005014226) #24	MCCC1 (ENSCJPG00005014225) #25	ENSCJPG00005014224 #26	B3GNT5 (ENSCJPG00005014223) #28	MCF2L2 (ENSCJPG00005013794) #27	ENSCJPG00005013793	RFC4 (ENSCJPG00005013792)	EIF4A2 (ENSCJPG00005013788)	KNG1 (ENSCJPG00005013787)	ENSCJPG00005013786	FETUB (ENSCJPG00005013785)	AHSG (ENSCJPG00005013784)	SENP5 (ENSCJPG00005013768)	EPHB3 (ENSCJPG00005013767)
Australian saltwater crocodile	MODERN SPECIES	30	ZMAT3 (ENSCPRG00005009651)	ENSCPRG00005009658	ZNF639 (ENSCPRG00005009780)	MFN1 (ENSCPRG00005009802)	GNB4 (ENSCPRG00005009816)	ACTL6A (ENSCPRG00005010054)	MRPL47 (ENSCPRG00005010062)	NDUFB5 (ENSCPRG00005010066)	USP13 (ENSCPRG00005010083)	PEX5L (ENSCPRG00005010104)	TTC14 (ENSCPRG00005010137)	ENSCPRG00005010293	CCDC39 (ENSCPRG00005010308)	DNAJC19 (ENSCPRG00005010343) #21	FXR1 (ENSCPRG00005010361) #20	SOX2 (ENSCPRG00005010584) #22	ENSCPRG00005010594	ATP11B (ENSCPRG00005010622) #23	DCUN1D1 (ENSCPRG00005010672) #24	MCCC1 (ENSCPRG00005010677) #25	LAMP3 (ENSCPRG00005010688)	MCF2L2 (ENSCPRG00005010698) #27	B3GNT5 (ENSCPRG00005010707) #28	ENSCPRG00005010709	RFC4 (ENSCPRG00005010711)	EIF4A2 (ENSCPRG00005010713)	KNG1 (ENSCPRG00005010726)	ENSCPRG00005010729	ENSCPRG00005010732	ENSCPRG00005010738	AHSG (ENSCPRG00005010739)
Cryptodira	ANCESTRAL SPECIES	16	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865
Testudinoidea	ANCESTRAL SPECIES	9	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701.n	ENSGT00390000013701.m	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Testudinidae	ANCESTRAL SPECIES	7	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701.n	ENSGT00390000013701.m	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00990000203899	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Goode s thornscrub tortoise	MODERN SPECIES	23	PIK3CA (ENSGEVG00005008110)	ENSGEVG00005008073	ZNF639 (ENSGEVG00005008054)	MFN1 (ENSGEVG00005008013)	GNB4 (ENSGEVG00005007979)	ACTL6A (ENSGEVG00005007939)	MRPL47 (ENSGEVG00005007908)	NDUFB5 (ENSGEVG00005007886)	USP13 (ENSGEVG00005007750)	PEX5L (ENSGEVG00005007677)	ENSGEVG00005007645	ENSGEVG00005007619	CCDC39 (ENSGEVG00005007473)	FXR1 (ENSGEVG00005007363) #20	DNAJC19 (ENSGEVG00005007338) #21	SOX2 (ENSGEVG00005007325) #22	ATP11B (ENSGEVG00005007238) #23	DCUN1D1 (ENSGEVG00005007193) #24	MCCC1 (ENSGEVG00005007168) #25	ENSGEVG00005007146 #26	B3GNT5 (ENSGEVG00005007129) #28	MCF2L2 (ENSGEVG00005005965) #27	ENSGEVG00005005567	RFC4 (ENSGEVG00005005545)	EIF4A2 (ENSGEVG00005005476)	ENSGEVG00005005440	ENSGEVG00005005418	ENSGEVG00005005406	ENSGEVG00005005386	SENP5 (ENSGEVG00005005372)	EPHB3 (ENSGEVG00005005314)
Abingdon island giant tortoise	MODERN SPECIES	76	ZMAT3 (ENSCABG00000016877)	PIK3CA (ENSCABG00000016963)	ENSCABG00000017237	ZNF639 (ENSCABG00000017240)	MFN1 (ENSCABG00000017278)	GNB4 (ENSCABG00000019060)	ACTL6A (ENSCABG00000019237)	MRPL47 (ENSCABG00000019319)	NDUFB5 (ENSCABG00000019321)	USP13 (ENSCABG00000019324)	PEX5L (ENSCABG00000019326)	TTC14 (ENSCABG00000019328)	CCDC39 (ENSCABG00000019333)	FXR1 (ENSCABG00000019346) #20	DNAJC19 (ENSCABG00000019628) #21	SOX2 (ENSCABG00000019639) #22
Emydidae	ANCESTRAL SPECIES	3	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701.n	ENSGT00390000013701.m	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C	ENSGT00940000165367
Three-toed box turtle	MODERN SPECIES	32	ZMAT3 (ENSTMTG00000009458)	PIK3CA (ENSTMTG00000009470)	ENSTMTG00000009517	ZNF639 (ENSTMTG00000009549)	MFN1 (ENSTMTG00000009563)	GNB4 (ENSTMTG00000009587)	ACTL6A (ENSTMTG00000009615)	MRPL47 (ENSTMTG00000009647)	NDUFB5 (ENSTMTG00000009666)	USP13 (ENSTMTG00000009685)	PEX5L (ENSTMTG00000009761)	TTC14 (ENSTMTG00000009812)	CCDC39 (ENSTMTG00000009881)	FXR1 (ENSTMTG00000010020) #20	DNAJC19 (ENSTMTG00000010071) #21	SOX2 (ENSTMTG00000010093) #22	ATP11B (ENSTMTG00000010113) #23	DCUN1D1 (ENSTMTG00000010264) #24	MCCC1 (ENSTMTG00000010280) #25	ENSTMTG00000010301 #26	MCF2L2 (ENSTMTG00000010345) #27	B3GNT5 (ENSTMTG00000010481) #28	RFC4 (ENSTMTG00000010487)	EIF4A2 (ENSTMTG00000010512)	KNG1 (ENSTMTG00000010596)	ENSTMTG00000010628	ENSTMTG00000010651	AHSG (ENSTMTG00000010663)	SENP5 (ENSTMTG00000010689)	ENSTMTG00000010713	ENSTMTG00000010729
Chinese turtle	MODERN SPECIES	2228	PIK3CA (ENSPSIG00000014440)	ZNF639 (ENSPSIG00000014336)	ENSPSIG00000014320	MFN1 (ENSPSIG00000013354)	GNB4 (ENSPSIG00000013084)	ACTL6A (ENSPSIG00000011750)	MRPL47 (ENSPSIG00000011536)	NDUFB5 (ENSPSIG00000011327)	USP13 (ENSPSIG00000010053)	PEX5L (ENSPSIG00000009593)	TTC14 (ENSPSIG00000009489)	ENSPSIG00000000550	CCDC39 (ENSPSIG00000008365)	FXR1 (ENSPSIG00000007616) #20	DNAJC19 (ENSPSIG00000007461) #21	SOX2 (ENSPSIG00000000544) #22	ENSPSIG00000000536	ATP11B (ENSPSIG00000006570) #23	DCUN1D1 (ENSPSIG00000017853) #24	MCCC1 (ENSPSIG00000017510) #25	ENSPSIG00000017491	ENSPSIG00000000526	B3GNT5 (ENSPSIG00000000516) #28	MCF2L2 (ENSPSIG00000017479) #27	RFC4 (ENSPSIG00000017443)	EIF4A2 (ENSPSIG00000017404)	KNG1 (ENSPSIG00000017354)	FETUB (ENSPSIG00000017318)	AHSG (ENSPSIG00000017251)	SENP5 (ENSPSIG00000017247)	EPHB3 (ENSPSIG00000017117)
Lepidosauria	ANCESTRAL SPECIES	12	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
tuatara	MODERN SPECIES	1534	PIK3CA (ENSSPUG00000014720)	ZNF639 (ENSSPUG00000014710)	MFN1 (ENSSPUG00000014691)	GNB4 (ENSSPUG00000014672)	ACTL6A (ENSSPUG00000014641)	MRPL47 (ENSSPUG00000014635)	NDUFB5 (ENSSPUG00000014622)	USP13 (ENSSPUG00000014601)	PEX5L (ENSSPUG00000014580)	ENSSPUG00000014567	ENSSPUG00000014559	CCDC39 (ENSSPUG00000014545)	FXR1 (ENSSPUG00000014501) #20	DNAJC19 (ENSSPUG00000014476) #21	ENSSPUG00000014466	SOX2 (ENSSPUG00000014432) #22	ENSSPUG00000014421 #23	ENSSPUG00000014405 #23	ENSSPUG00000014393 #23	DCUN1D1 (ENSSPUG00000014386) #24	MCCC1 (ENSSPUG00000014366) #25	ENSSPUG00000014354 #26	MCF2L2 (ENSSPUG00000014254) #27	RFC4 (ENSSPUG00000014211)	EIF4A2 (ENSSPUG00000014154)	AHSG (ENSSPUG00000014094)	SENP5 (ENSSPUG00000014067)	EPHB3 (ENSSPUG00000014042)	ENSSPUG00000014027	ENSSPUG00000014013	ENSSPUG00000013989
Episquamata	ANCESTRAL SPECIES	2	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000011515	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Toxicofera	ANCESTRAL SPECIES	2	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000011515	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT01030000237363	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B.m	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00940000158024.C
Elapidae	ANCESTRAL SPECIES	4	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000011515	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT01030000237363	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B.m	ENSGT00950000182930.B.n	ENSGT00950000182930.A.b.i.a
Elapidae_a	ANCESTRAL SPECIES		ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000011515	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT01030000237363	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B.m
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000011515	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000164015	ENSGT00940000159676 #28	ENSGT00940000161734 #27	ENSGT01030000237363	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B.m
Eastern brown snake	MODERN SPECIES	29	PIK3CA (ENSPTXG00000017806)	ZNF639 (ENSPTXG00000017805)	MFN1 (ENSPTXG00000017761)	GNB4 (ENSPTXG00000017756)	NIFK (ENSPTXG00000017754)	ACTL6A (ENSPTXG00000017752)	MRPL47 (ENSPTXG00000017751)	NDUFB5 (ENSPTXG00000017750)	USP13 (ENSPTXG00000017659)	PEX5L (ENSPTXG00000017655)	TTC14 (ENSPTXG00000017654)	ENSPTXG00000017653	ENSPTXG00000017651	FXR1 (ENSPTXG00000017650) #20	DNAJC19 (ENSPTXG00000017649) #21	SOX2 (ENSPTXG00000017648) #22	ENSPTXG00000017647	ATP11B (ENSPTXG00000017645) #23	DCUN1D1 (ENSPTXG00000017644) #24	MCCC1 (ENSPTXG00000017643) #25	LAMP3 (ENSPTXG00000017642)	B3GNT5 (ENSPTXG00000017641) #28	MCF2L2 (ENSPTXG00000017640) #27	ENSPTXG00000017639 #27	ENSPTXG00000017637	RFC4 (ENSPTXG00000017636)	EIF4A2 (ENSPTXG00000017631)	ENSPTXG00000017630
Mainland tiger snake	MODERN SPECIES		PIK3CA (ENSNSUG00000003932)	ENSNSUG00000004425	ZNF639 (ENSNSUG00000004427)	MFN1 (ENSNSUG00000004432)	GNB4 (ENSNSUG00000004440)	NIFK (ENSNSUG00000004538)	ACTL6A (ENSNSUG00000004551)	MRPL47 (ENSNSUG00000004553)	NDUFB5 (ENSNSUG00000004556)	USP13 (ENSNSUG00000004559)	PEX5L (ENSNSUG00000004565)	TTC14 (ENSNSUG00000004573)	CCDC39 (ENSNSUG00000004589)	FXR1 (ENSNSUG00000004596) #20	DNAJC19 (ENSNSUG00000004600) #21	SOX2 (ENSNSUG00000004653) #22
Blue-lipped sea krait	MODERN SPECIES	4101																SOX2 (ENSLLTG00000001285) #22
Indian cobra	MODERN SPECIES	3	PIK3CA (ENSNNAG00000007680)	ZNF639 (ENSNNAG00000007836)	MFN1 (ENSNNAG00000007861)	GNB4 (ENSNNAG00000007920)	NIFK (ENSNNAG00000007941)	ACTL6A (ENSNNAG00000007971)	MRPL47 (ENSNNAG00000008025)	NDUFB5 (ENSNNAG00000008239)	USP13 (ENSNNAG00000008293)	PEX5L (ENSNNAG00000008347)	TTC14 (ENSNNAG00000008565)	ENSNNAG00000008598	CCDC39 (ENSNNAG00000008649)	FXR1 (ENSNNAG00000008767) #20	DNAJC19 (ENSNNAG00000010510) #21	SOX2 (ENSNNAG00000010554) #22	ATP11B (ENSNNAG00000010604) #23	DCUN1D1 (ENSNNAG00000011093) #24	MCCC1 (ENSNNAG00000011141) #25	ENSNNAG00000011193 #26	MCF2L2 (ENSNNAG00000011227) #27	B3GNT5 (ENSNNAG00000011392) #28	ENSNNAG00000011403	RFC4 (ENSNNAG00000011428)	EIF4A2 (ENSNNAG00000011460)	KNG1 (ENSNNAG00000011576)	ENSNNAG00000011641	ENSNNAG00000011657	ENSNNAG00000011677	ENSNNAG00000011707	ENSNNAG00000011721
Anura	ANCESTRAL SPECIES	26	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00940000164015	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182930.A.a	ENSGT00950000182930.C	ENSGT00940000159865	ENSGT00390000003197	ENSGT00390000001143	ENSGT00940000163773
Leishan spiny toad	MODERN SPECIES	7	USP13 (ENSLLEG00000028479)	PEX5L (ENSLLEG00000028895)	ENSLLEG00000029002	ENSLLEG00000029013	ENSLLEG00000029020	TTC14 (ENSLLEG00000029050)	CCDC39 (ENSLLEG00000029259)	ENSLLEG00000029315	ENSLLEG00000029445 #20	ENSLLEG00000029888	ENSLLEG00000029895	ENSLLEG00000029902	ENSLLEG00000029908	ENSLLEG00000029915	ENSLLEG00000029924	SOX2 (ENSLLEG00000029927) #22	ENSLLEG00000029935	ENSLLEG00000029941	ENSLLEG00000004795	ATP11B (ENSLLEG00000004892) #23	ENSLLEG00000005167	DCUN1D1 (ENSLLEG00000005195) #24	MCCC1 (ENSLLEG00000005225) #25	LAMP3 (ENSLLEG00000005285)	MCF2L2 (ENSLLEG00000005347) #27	B3GNT5 (ENSLLEG00000005548) #28	RFC4 (ENSLLEG00000005586)	EIF4A2 (ENSLLEG00000005693)	ENSLLEG00000006170	ENSLLEG00000006313	ENSLLEG00000006348
Frog	MODERN SPECIES	5	kcnmb2 (ENSXETG00000037867)	zmat3 (ENSXETG00000007251)	pik3ca (ENSXETG00000007252)	kcnmb3 (ENSXETG00000007254)	znf639 (ENSXETG00000007256)	mfn1 (ENSXETG00000007258)	gnb4 (ENSXETG00000007259)	actl6a (ENSXETG00000007260)	mrpl47 (ENSXETG00000029930)	ndufb5 (ENSXETG00000007264)	usp13 (ENSXETG00000007265)	pex5l (ENSXETG00000032445)	ttc14 (ENSXETG00000019435)	ccdc39 (ENSXETG00000019437)	fxr1 (ENSXETG00000019441) #20	sox2 (ENSXETG00000036807) #22	ENSXETG00000038267	atp11b (ENSXETG00000016814) #23	dcun1d1 (ENSXETG00000016813) #24	mccc1 (ENSXETG00000016826) #25	lamp3 (ENSXETG00000036063)	atp13a-like (ENSXETG00000016833)	plaat1 (ENSXETG00000032952)	atp13a4 (ENSXETG00000016836)	opa1 (ENSXETG00000016841)	hes1 (ENSXETG00000016852)	ENSXETG00000044142	cpn2.2 (ENSXETG00000030284)	lrrc15 (ENSXETG00000006623)	GP5 (ENSXETG00000003446)	atp13a3 (ENSXETG00000003447)
Coelacanth	MODERN SPECIES	333	KCNMB2 (ENSLACG00000015936)	ZMAT3 (ENSLACG00000015780)	PIK3CA (ENSLACG00000015507)	KCNMB3 (ENSLACG00000015425)	MFN1 (ENSLACG00000015275)	GNB4 (ENSLACG00000014929)	ACTL6A (ENSLACG00000014797)	MRPL47 (ENSLACG00000014781)	NDUFB5 (ENSLACG00000014749)	USP13 (ENSLACG00000014314)	PEX5L (ENSLACG00000013935)	TTC14 (ENSLACG00000012412)	CCDC39 (ENSLACG00000012072)	FXR1 (ENSLACG00000011290) #20	DNAJC19 (ENSLACG00000011183) #21	SOX2 (ENSLACG00000006560) #22
Actinopterygii	ANCESTRAL SPECIES	10												ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b
Reedfish	MODERN SPECIES	10	agfg1b (ENSECRG00000013605)	TM4SF20 (ENSECRG00000013585)	mrpl44 (ENSECRG00000013575)	mffb (ENSECRG00000013552)	COL4A4 (ENSECRG00000013507)	rhbdd1 (ENSECRG00000013491)	IRS1 (ENSECRG00000013482)	NYAP2 (ENSECRG00000013473)	MECOM (ENSECRG00000013444)	megf6 (ENSECRG00000013193)	CCDC39 (ENSECRG00000013005)	ttc14 (ENSECRG00000012645)	CCDC39 (ENSECRG00000012508)	fxr1 (ENSECRG00000012461) #20	dnajc19 (ENSECRG00000012439) #21	sox2 (ENSECRG00000012429) #22	ENSECRG00000012422	ATP11B (ENSECRG00000012239) #23	dcun1d1 (ENSECRG00000012170) #24	ENSECRG00000012146	mccc1 (ENSECRG00000012124) #25	ENSECRG00000012114 #26	ENSECRG00000012094	eif4a2 (ENSECRG00000012026)	rfc4 (ENSECRG00000011992)	b3gnt5a (ENSECRG00000011979) #28	MCF2L2 (ENSECRG00000011952) #27	ect2 (ENSECRG00000011854)	SPATA16 (ENSECRG00000011817)	ENSECRG00000011785	NLGN1 (ENSECRG00000011771)
Neopterygii	ANCESTRAL SPECIES	17												ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000161734 #27	ENSGT00940000159676 #28	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b
Spotted gar	MODERN SPECIES	652												ttc14 (ENSLOCG00000000432)	CCDC39 (ENSLOCG00000000553)	fxr1 (ENSLOCG00000000589) #20	dnajc19 (ENSLOCG00000000624) #21	sox2 (ENSLOCG00000017346) #22	ATP11B (ENSLOCG00000000659) #23	dcun1d1 (ENSLOCG00000000735) #24	ENSLOCG00000000758	mccc1 (ENSLOCG00000000778) #25	ENSLOCG00000000806 #26	ENSLOCG00000000828	eif4a2 (ENSLOCG00000000847)	rfc4 (ENSLOCG00000000876)	ENSLOCG00000000896 #27	b3gnt5a (ENSLOCG00000017371) #28	ect2 (ENSLOCG00000000941)	SPATA16 (ENSLOCG00000000975)	nlgn1 (ENSLOCG00000000991)	NAALADL2 (ENSLOCG00000001022)	ENSLOCG00000001063
Osteoglossocephalai	ANCESTRAL SPECIES	234													ENSGT00390000015010	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552 #24	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000161734 #27	ENSGT00940000159676.a #28	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c
Osteoglossiformes	ANCESTRAL SPECIES	221													ENSGT00390000015010	ENSGT00950000183189.a.b.a.m.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000154552.i #24	ENSGT00940000153783.b.b.d.h	ENSGT00940000159676.b #28	ENSGT00940000156299.fb	ENSGT00950000183039.B.b.d	ENSGT00940000155531.a.b	ENSGT00950000183039.B.a	ENSGT00390000018195	ENSGT00940000165367.b	ENSGT00940000167389	ENSGT00940000158024.B.e	ENSGT01100000263484.A.c.a.a.b	ENSGT00940000160019	ENSGT00940000164175.a
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	177	lsg1 (ENSPKIG00000002895)	fam43a (ENSPKIG00000002870)	XXYLT1 (ENSPKIG00000002844)	ARMC9 (ENSPKIG00000002681)	b3gnt7 (ENSPKIG00000002643)	ncl (ENSPKIG00000002604)	nppc (ENSPKIG00000002587)	ENSPKIG00000002559	alpi.1 (ENSPKIG00000002501)	ppp1r2 (ENSPKIG00000002482)	acap2b (ENSPKIG00000002327)	htr2b (ENSPKIG00000002239)	psmd1 (ENSPKIG00000002162)	ttc14 (ENSPKIG00000002114)	fxr1 (ENSPKIG00000002030) #20	sox2 (ENSPKIG00000001950) #22	rpf1 (ENSPKIG00000001892)	ctbs (ENSPKIG00000001857)
P. kingsleyae	MODERN SPECIES	279											ENSPKIG00000014384	ENSPKIG00000014373	CCDC39 (ENSPKIG00000014216)	dnajc19 (ENSPKIG00000014152) #21	fxr1 (ENSPKIG00000014091) #20	sox2 (ENSPKIG00000014053) #22	ATP11B (ENSPKIG00000013980) #23	dcun1d1 (ENSPKIG00000013939) #24	EIF4A2 (ENSPKIG00000013856)	b3gnt5b (ENSPKIG00000013843) #28	ENSPKIG00000013678 #27	ect2 (ENSPKIG00000013550)	nlgn1 (ENSPKIG00000013470)
Asian bonytongue	MODERN SPECIES	17	ENSSFOG00015031548	fam43a (ENSSFOG00015028212)	b3gnt7 (ENSSFOG00015013183)	ENSSFOG00015013153	ENSSFOG00015031576	DIS3L2 (ENSSFOG00015013209)	ACAP2 (ENSSFOG00015013347)	HTR2B (ENSSFOG00015026796)	ENSSFOG00015013467	eif2b5 (ENSSFOG00015013408)	ENSSFOG00015026000	ENSSFOG00015029763	CCDC39 (ENSSFOG00015013492)	fxr1 (ENSSFOG00015013518) #20	dnajc19 (ENSSFOG00015013549) #21	sox2 (ENSSFOG00015033213) #22	ENSSFOG00015013618 #23	dcun1d1 (ENSSFOG00015013831) #24	EIF4A2 (ENSSFOG00015013858)	b3gnt5b (ENSSFOG00015014030) #28	ENSSFOG00015013908 #27	ect2 (ENSSFOG00015014038)	nlgn1 (ENSSFOG00015014077)	ENSSFOG00015014101	kcnmb2 (ENSSFOG00015028985)	PIK3CA (ENSSFOG00015014161)	KCNMB3 (ENSSFOG00015014201)	polr2h (ENSSFOG00015014221)	ENSSFOG00015014240	ENSSFOG00015014265	ephb3a (ENSSFOG00015014281)
Clupeocephala	ANCESTRAL SPECIES	164	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00390000003006	ENSGT00940000174617	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00940000169190	ENSGT00940000153783.b.b.c.b	ENSGT00550000074917	ENSGT00940000161734 #27	ENSGT00940000159676.a #28	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00730000111202	ENSGT00940000155531.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	244												ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a #28	ENSGT00940000161734 #27	ENSGT00550000074917
Protacanthopterygii	ANCESTRAL SPECIES	104											ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a.l #20	ENSGT00950000183189.a.b.a.k #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156968.p	ENSGT00940000156262	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546	ENSGT00510000047658	ENSGT00510000048142	ENSGT00530000063821.a	ENSGT00940000155042.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	115												ENSGT00940000160141.e.b.a	ENSGT00390000013701.t	ENSGT00950000183189.a.b.a.k #20	ENSGT00940000154384 #21	ENSGT00940000160614.i #22	ENSGT00940000156968.o	ENSGT00960000186843	ENSGT00940000156262.y	ENSGT00950000182976.b.a.d	ENSGT00950000182913.B.f.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b.h	ENSGT00940000154130.a.a.b.m	ENSGT00940000165232.h	ENSGT00940000157546	ENSGT00510000047658.c	ENSGT00510000048142.v	ENSGT00530000063821.a	ENSGT00940000155042.a.a.f	ENSGT00390000001724.l.b.b
Huchen	MODERN SPECIES	823													LRRC24 (ENSHHUG00000031882)	fxr1 (ENSHHUG00000031921) #20	dnajc19 (ENSHHUG00000033755) #21	sox2 (ENSHHUG00000033803) #22	lrrc40 (ENSHHUG00000033830)	LRRC7 (ENSHHUG00000033986)
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000160614.i #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000160614.i #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000160614.i #22
Chinook salmon	MODERN SPECIES	29	si:ch211-198n5.11 (ENSOTSG00005032130)	RPE65 (ENSOTSG00005031467)	depdc1a (ENSOTSG00005031320)	ENSOTSG00005031319	ssbp4 (ENSOTSG00005031318)	fkbp8 (ENSOTSG00005031304)	ell (ENSOTSG00005031283)	DOT1L (ENSOTSG00005031276)	amh (ENSOTSG00005031275)	oaz1a (ENSOTSG00005031272)	org (ENSOTSG00005031270)	lingo3a (ENSOTSG00005031269)	nfil3-4 (ENSOTSG00005031267)	ENSOTSG00005031265	lrrc40 (ENSOTSG00005031078)	sox2 (ENSOTSG00005031077) #22	fxr1 (ENSOTSG00005031076) #20	dnajc19 (ENSOTSG00005031074) #21	fxr1 (ENSOTSG00005031073) #20	ttc14 (ENSOTSG00005031072)	LRRC24 (ENSOTSG00005031071)	ENSOTSG00005031070	ENSOTSG00005031069	ENSOTSG00005031068	gpc1a (ENSOTSG00005031065)	ENSOTSG00005031062	gpc5b (ENSOTSG00005031061)	aqp12 (ENSOTSG00005031060)	rpp21 (ENSOTSG00005031059)	ENSOTSG00005030643	ENSOTSG00005030636
Salmoninae	ANCESTRAL SPECIES	363											ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s	ENSGT00950000183189.a.b.a.l #20	ENSGT00940000160614.j #22	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a	ENSGT00940000155042.a.a.e	ENSGT00390000001724.l.a	ENSGT00940000155042.a.b	ENSGT00940000157399.b	ENSGT00940000161649.e
Huchen	MODERN SPECIES	398											ENSHHUG00000050079	LRRC24 (ENSHHUG00000050076)	ttc14 (ENSHHUG00000050074)	fxr1 (ENSHHUG00000050063) #20	ENSHHUG00000050059	sox2 (ENSHHUG00000050049) #22	LRRC7 (ENSHHUG00000049968)	ENSHHUG00000049946	RPE65 (ENSHHUG00000049867)	ENSHHUG00000049862	fnbp1l (ENSHHUG00000049849)	bcar3 (ENSHHUG00000049830)	zgc:171480 (ENSHHUG00000049818)	gclm (ENSHHUG00000049802)	dnttip2 (ENSHHUG00000049791)	AGBL4 (ENSHHUG00000049771)
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00940000153902.a.e	ENSGT00940000154973.a.b.b	ENSGT00390000013989.a.m	ENSGT00940000158159.c	ENSGT00950000182988.a.a.b.j	ENSGT00390000003020.c	ENSGT00530000063816.d.n	ENSGT01050000244955.b.c.d	ENSGT01050000244897.a.a.b.b.b	ENSGT00940000155297.hb.b.a	ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s	ENSGT00950000183189.a.b.a.l #20	ENSGT00940000160614.j #22	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a	ENSGT00940000155042.a.a.e	ENSGT00390000001724.l.a.a	ENSGT00940000155042.a.b	ENSGT00940000157399.b	ENSGT00940000161649.e
Salmo	ANCESTRAL SPECIES	20	ENSGT00940000153902.a.e	ENSGT00940000154973.a.b.b	ENSGT00390000013989.a.m	ENSGT00940000158159.c	ENSGT00950000182988.a.a.b.j	ENSGT00530000063816.d.n	ENSGT00390000003020.c	ENSGT01050000244955.b.c.d	ENSGT01050000244897.a.a.b.b.b	ENSGT00940000155297.hb.b.a	ENSGT00940000154507.t	ENSGT00940000160141.e.b.b	ENSGT00980000203290	ENSGT00390000013701.s	ENSGT00950000183189.a.b.a.l #20	ENSGT00940000160614.j #22	ENSGT00940000156968.p	ENSGT00940000156262.z	ENSGT00950000182976.b.a.c	ENSGT00950000182913.B.f.e	ENSGT00950000183047.c.b.g	ENSGT00940000154130.a.a.b.n	ENSGT00940000165232.g	ENSGT00510000047658.d	ENSGT00510000048142.u	ENSGT00390000001724.l.b.a	ENSGT00940000157399.b	ENSGT00940000161649.e	ENSGT00940000154831.h.b	ENSGT00940000160194.k	ENSGT00730000110988.wb.a.d
Atlantic salmon	MODERN SPECIES	15	ankrd29 (ENSSSAG00000086124)	ENSSSAG00000044992	ENSSSAG00000044949	ENSSSAG00000041114	ENSSSAG00000042555	ENSSSAG00000082107	ENSSSAG00000101423	ENSSSAG00000086964	gpc5b (ENSSSAG00000043871)	gpc1a (ENSSSAG00000042394)	ephb1 (ENSSSAG00000041250)	ENSSSAG00000041180	ENSSSAG00000041164	ttc14 (ENSSSAG00000041099)	ENSSSAG00000118997 #20	sox2 (ENSSSAG00000088464) #22	ENSSSAG00000085029	ENSSSAG00000084166	ENSSSAG00000041043	ENSSSAG00000040989	LRRC7 (ENSSSAG00000012965)	DEPDC1 (ENSSSAG00000011177)	RPE65 (ENSSSAG00000008787)	fnbp1l (ENSSSAG00000080709)	bcar3 (ENSSSAG00000080653)	zgc:171480 (ENSSSAG00000080639)	gclm (ENSSSAG00000094075)	dnttip2 (ENSSSAG00000080634)	bend5 (ENSSSAG00000080616)	elavl4 (ENSSSAG00000080587)	dmrta2 (ENSSSAG00000108883)
Northern pike	MODERN SPECIES	7	ENSELUG00000013401	ankrd29 (ENSELUG00000013386)	plekhb2 (ENSELUG00000013300)	ing5 (ENSELUG00000013274)	cep19 (ENSELUG00000013204)	pigx (ENSELUG00000013193)	pak2b (ENSELUG00000013169)	PTGER3 (ENSELUG00000013065)	zranb2 (ENSELUG00000013041)	EPHB1 (ENSELUG00000013008)	LRRC24 (ENSELUG00000012962)	ENSELUG00000000468	ttc14 (ENSELUG00000012936)	fxr1 (ENSELUG00000012917) #20	dnajc19 (ENSELUG00000012861) #21	sox2 (ENSELUG00000012841) #22	lrrc40 (ENSELUG00000012790)	LRRC7 (ENSELUG00000012686)	depdc1a (ENSELUG00000012378)	rpe65b (ENSELUG00000012274)	si:ch211-198n5.11 (ENSELUG00000001601)	mmachc (ENSELUG00000012175)	ENSELUG00000012158	ENSELUG00000012150	ENSELUG00000012123	IPO13 (ENSELUG00000001498)	pfas (ENSELUG00000011791)	ENSELUG00000011714	hook1 (ENSELUG00000011682)	cyp2n13 (ENSELUG00000011542)	cyp2ad3 (ENSELUG00000011482)
Acanthomorphata	ANCESTRAL SPECIES	116												ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000156262	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00390000001143	ENSGT00940000157074	ENSGT00390000003197	ENSGT00940000155866	ENSGT01030000234590.A.b.a.a
Cod	MODERN SPECIES	3	cp (ENSGMOG00000008595)	ENSGMOG00000027679	NCBP2 (ENSGMOG00000018657)	ENSGMOG00000018655	NCBP2AS2 (ENSGMOG00000030915)	MELTF (ENSGMOG00000018637)	ENSGMOG00000028710	ENSGMOG00000003860	ENSGMOG00000030815	ENSGMOG00000014103	ENSGMOG00000008558	ENSGMOG00000008540	ENSGMOG00000032839 #26	ENSGMOG00000008521 #25	ATP11B (ENSGMOG00000008504) #23	ENSGMOG00000019777 #22	dnajc19 (ENSGMOG00000000473) #21	ENSGMOG00000000446 #20	pomgnt1 (ENSGMOG00000003207)	TSPAN1 (ENSGMOG00000003195)	PIK3R3 (ENSGMOG00000000803)	MAST2 (ENSGMOG00000015409)	ntmt2 (ENSGMOG00000031238)	kifap3a (ENSGMOG00000009568)	niban1a (ENSGMOG00000009550)	TRMT1L (ENSGMOG00000009535)	ENSGMOG00000036754	ivns1abpa (ENSGMOG00000004931)	HMCN1 (ENSGMOG00000010733)	arpc5b (ENSGMOG00000010856)	PLA2G4A (ENSGMOG00000010862)
Euacanthomorphacea	ANCESTRAL SPECIES	31	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000169454	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798
Pinecone sodierfish	MODERN SPECIES	18	glrx2 (ENSMMDG00005019466)	b3galt2 (ENSMMDG00005019465)	ENSMMDG00005019461	ENSMMDG00005019458	ENSMMDG00005019437	ENSMMDG00005019423	ENSMMDG00005019412	ENSMMDG00005019407	fnbp1l (ENSMMDG00005019352)	bcar3 (ENSMMDG00005019341)	ENSMMDG00005019337	ENSMMDG00005019335	ENSMMDG00005019330	fxr1 (ENSMMDG00005016938) #20	dnajc19 (ENSMMDG00005016880) #21	sox2 (ENSMMDG00005016876) #22	ATP11B (ENSMMDG00005011889) #23	mccc1 (ENSMMDG00005007241) #25	ENSMMDG00005007138 #26	kng1 (ENSMMDG00005007133)	PIK3CA (ENSMMDG00005007127)	ENSMMDG00005007018	RNF14 (ENSMMDG00005007010)	ENSMMDG00005007006	stxbp3 (ENSMMDG00005006114)	FNDC7 (ENSMMDG00005006091)	ENSMMDG00005006089	ENSMMDG00005006086	ENSMMDG00005006084	ENSMMDG00005006080	henmt1 (ENSMMDG00005006076)
Percomorphaceae	ANCESTRAL SPECIES	32	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000169454	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798
Tiger tail seahorse	MODERN SPECIES	65	depdc1a (ENSHCOG00000009576)	rpe65b (ENSHCOG00000009617)	si:ch211-198n5.11 (ENSHCOG00000009855)	fnbp1l (ENSHCOG00000009923)	bcar3 (ENSHCOG00000009968)	hps3 (ENSHCOG00000010024)	ENSHCOG00000000316	ttc14 (ENSHCOG00000010117)	ENSHCOG00000010144	FXR1 (ENSHCOG00000010198) #20	fxr1 (ENSHCOG00000010273) #20	ENSHCOG00000010298	fxr1 (ENSHCOG00000010337) #20	dnajc19 (ENSHCOG00000010350) #21	ENSHCOG00000010353	sox2 (ENSHCOG00000010386) #22	ENSHCOG00000010410 #23	ATP11B (ENSHCOG00000010454) #23	mccc1 (ENSHCOG00000010503) #25	ENSHCOG00000010517 #26	ENSHCOG00000010526	PIK3CA (ENSHCOG00000010578)	ENSHCOG00000010592	PIK3CA (ENSHCOG00000010611)	ZMAT3 (ENSHCOG00000010624)	ENSHCOG00000010632	ENSHCOG00000010650	ENSHCOG00000010665	ARHGAP39 (ENSHCOG00000010685)	rad54l (ENSHCOG00000000336)	ENSHCOG00000010715
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h
Oryzias	ANCESTRAL SPECIES	5	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a
Oryzias_a	ANCESTRAL SPECIES	14	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT01100000264681	ENSGT00390000013701.w	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a	ENSGT00390000015318.b
Japanese Medaka HdrR	MODERN SPECIES	18	b3galt2 (ENSORLG00000025428)	ENSORLG00000027370	aspm (ENSORLG00000012201)	depdc1a (ENSORLG00000012180)	rpe65b (ENSORLG00000012125)	si:ch211-198n5.11 (ENSORLG00000012062)	fnbp1l (ENSORLG00000012037)	bcar3 (ENSORLG00000011935)	hps3 (ENSORLG00000011881)	ENSORLG00000011842	ENSORLG00000029868	ttc14 (ENSORLG00000011825)	fxr1 (ENSORLG00000011787) #20	dnajc19 (ENSORLG00000026035) #21	ENSORLG00000023151	sox2 (ENSORLG00000011685) #22	ATP11B (ENSORLG00000025942) #23	mccc1 (ENSORLG00000011678) #25	ENSORLG00000025358	kng1 (ENSORLG00000011656)	PIK3CA (ENSORLG00000011644)	ENSORLG00000011575	ENSORLG00000011566	ENSORLG00000011540	stxbp3 (ENSORLG00000011502)	ENSORLG00000011405	ENSORLG00000029557	ENSORLG00000028575	henmt1 (ENSORLG00000011389)	fam102bb (ENSORLG00000011370)	slc25a24 (ENSORLG00000011340)
Oryzias_b	ANCESTRAL SPECIES	15	ENSGT00940000174597	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT01050000245029.a	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a
Indian medaka	MODERN SPECIES	13	ENSOMEG00000012689	ENSOMEG00000012650	ENSOMEG00000012637	aspm (ENSOMEG00000012594)	depdc1a (ENSOMEG00000012533)	rpe65b (ENSOMEG00000012468)	si:ch211-198n5.11 (ENSOMEG00000012358)	fnbp1l (ENSOMEG00000012284)	bcar3 (ENSOMEG00000012147)	gnb5a (ENSOMEG00000011983)	hps3 (ENSOMEG00000011957)	ENSOMEG00000011872	ttc14 (ENSOMEG00000011795)	fxr1 (ENSOMEG00000011753) #20	dnajc19 (ENSOMEG00000011655) #21	sox2 (ENSOMEG00000011636) #22	ATP11B (ENSOMEG00000011605) #23	mccc1 (ENSOMEG00000011470) #25	ENSOMEG00000011439	kng1 (ENSOMEG00000011412)	PIK3CA (ENSOMEG00000011383)	ENSOMEG00000011303	ENSOMEG00000011259	ENSOMEG00000011225	ENSOMEG00000011198	stxbp3 (ENSOMEG00000011180)	FNDC7 (ENSOMEG00000011142)	ENSOMEG00000011097	ENSOMEG00000011070	ENSOMEG00000011001	henmt1 (ENSOMEG00000010988)
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h
Cyprinodontoidei	ANCESTRAL SPECIES	29	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00940000173859	ENSGT01050000244902.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a	ENSGT00390000015318.b
NAME_4	ANCESTRAL SPECIES	62	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00530000063460.B	ENSGT01050000244902.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004674.j	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h
Sheepshead minnow	MODERN SPECIES	681												hps3 (ENSCVAG00000002673)	ttc14 (ENSCVAG00000002680)	fxr1 (ENSCVAG00000000711) #20	dnajc19 (ENSCVAG00000002724) #21	sox2 (ENSCVAG00000002728) #22
Mummichog	MODERN SPECIES	2395												ttc14 (ENSFHEG00000003862)	ENSFHEG00000003734 #20	fxr1 (ENSFHEG00000003714) #20	dnajc19 (ENSFHEG00000003702) #21	sox2 (ENSFHEG00000003675) #22	ATP11B (ENSFHEG00000003653) #23	mccc1 (ENSFHEG00000003581) #25	ENSFHEG00000003270 #26	ENSFHEG00000003260	PIK3CA (ENSFHEG00000003251)	ZMAT3 (ENSFHEG00000003221)	ENSFHEG00000003207	ENSFHEG00000003197	stxbp3 (ENSFHEG00000003185)	ENSFHEG00000003177	ENSFHEG00000003168	ENSFHEG00000003159	ENSFHEG00000003137	henmt1 (ENSFHEG00000003127)	fam102bb (ENSFHEG00000003122)
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00940000173859	ENSGT01050000244902.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a	ENSGT00390000015318.b
Platyfish	MODERN SPECIES	23	ENSXMAG00000012631	SZT2 (ENSXMAG00000028752)	ENSXMAG00000029261	ENSXMAG00000026966	aspm (ENSXMAG00000000723)	depdc1a (ENSXMAG00000000720)	rpe65b (ENSXMAG00000000719)	si:ch211-198n5.11 (ENSXMAG00000000716)	fnbp1l (ENSXMAG00000000711)	bcar3 (ENSXMAG00000000707)	hps3 (ENSXMAG00000000688)	ENSXMAG00000025704	ttc14 (ENSXMAG00000016060)	fxr1 (ENSXMAG00000000666) #20	dnajc19 (ENSXMAG00000000660) #21	sox2 (ENSXMAG00000020128) #22	ATP11B (ENSXMAG00000000614) #23	mccc1 (ENSXMAG00000000611) #25	ENSXMAG00000000609	PIK3CA (ENSXMAG00000000586)	ENSXMAG00000015188	ENSXMAG00000002519	ENSXMAG00000000582	stxbp3 (ENSXMAG00000000568)	ENSXMAG00000000562	ENSXMAG00000000559	henmt1 (ENSXMAG00000000555)	fam102bb (ENSXMAG00000000553)	slc25a24 (ENSXMAG00000000548)	tmem69 (ENSXMAG00000000546)	tm4sf4 (ENSXMAG00000000538)
Poecilia	ANCESTRAL SPECIES	1	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00940000173859	ENSGT01050000244902.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a.e	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a	ENSGT00390000015318.b
Guppy	MODERN SPECIES	456	comp (ENSPREG00000000551)	tmem38a (ENSPREG00000000545)	smim7 (ENSPREG00000000542)	ENSPREG00000022870	ENSPREG00000022865	aspm (ENSPREG00000022836)	depdc1a (ENSPREG00000022815)	rpe65b (ENSPREG00000022806)	si:ch211-198n5.11 (ENSPREG00000022798)	fnbp1l (ENSPREG00000022786)	bcar3 (ENSPREG00000022769)	hps3 (ENSPREG00000022756)	ttc14 (ENSPREG00000022747)	fxr1 (ENSPREG00000022738) #20	dnajc19 (ENSPREG00000022727) #21	sox2 (ENSPREG00000022723) #22	ATP11B (ENSPREG00000022699) #23	mccc1 (ENSPREG00000022680) #25	ENSPREG00000022675 #26	ENSPREG00000022657	ENSPREG00000022643	ENSPREG00000022632	ENSPREG00000022616	stxbp3 (ENSPREG00000022601)	ENSPREG00000022590	ENSPREG00000022583	ENSPREG00000022577	ENSPREG00000022570	henmt1 (ENSPREG00000022562)	fam102bb (ENSPREG00000022550)	slc25a24 (ENSPREG00000022535)
NAME_6	ANCESTRAL SPECIES	258																ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a.e	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a	ENSGT00390000015318.b
Amazon molly	MODERN SPECIES	669																sox2 (ENSPFOG00000020565) #22	ATP11B (ENSPFOG00000019122) #23	mccc1 (ENSPFOG00000019171) #25	ENSPFOG00000023632 #26	ENSPFOG00000019183	PIK3CA (ENSPFOG00000019194)	ENSPFOG00000019206	ENSPFOG00000019210	ENSPFOG00000019213	stxbp3 (ENSPFOG00000019220)	ENSPFOG00000019229	ENSPFOG00000022182	henmt1 (ENSPFOG00000019232)	fam102bb (ENSPFOG00000019237)	slc25a24 (ENSPFOG00000019244)	tmem69 (ENSPFOG00000019256)
Sailfin molly	MODERN SPECIES	173																sox2 (ENSPLAG00000022947) #22	ATP11B (ENSPLAG00000022930) #23	mccc1 (ENSPLAG00000022735) #25	ENSPLAG00000022676 #26	ENSPLAG00000022669	PIK3CA (ENSPLAG00000022638)	ZMAT3 (ENSPLAG00000022572)	ENSPLAG00000022544	ENSPLAG00000022503	stxbp3 (ENSPLAG00000022439)	ENSPLAG00000022387
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	356												ttc14 (ENSKMAG00000004657)	fxr1 (ENSKMAG00000004687) #20	dnajc19 (ENSKMAG00000004753) #21	ENSKMAG00000004775	sox2 (ENSKMAG00000004796) #22	ATP11B (ENSKMAG00000004892) #23
Mangrove rivulus	MODERN SPECIES	142						ENSKMAG00000003154	gk5 (ENSKMAG00000003093)	atp1b3a (ENSKMAG00000003064)	grk7a (ENSKMAG00000003055)	fbxo36b (ENSKMAG00000003025)	agfg1b (ENSKMAG00000002962)	zgc:110269 (ENSKMAG00000002929)	MFF (ENSKMAG00000002899)	stk25b (ENSKMAG00000002843)	septin2 (ENSKMAG00000002786)	ENSKMAG00000002757 #22	selenof (ENSKMAG00000002735)	hs2st1a (ENSKMAG00000002702)	ENSKMAG00000002686	PKN2 (ENSKMAG00000002547)	gtf2b (ENSKMAG00000002477)	ENSKMAG00000002465	ENSKMAG00000002451	znf644a (ENSKMAG00000002438)	HFM1 (ENSKMAG00000002282)	cdc7 (ENSKMAG00000002260)	glmna (ENSKMAG00000002245)	rpap2 (ENSKMAG00000002186)	gfi1aa (ENSKMAG00000002148)	RPL5 (ENSKMAG00000002090)	dipk1aa (ENSKMAG00000002071)
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h
Pomacentridae	ANCESTRAL SPECIES	16	ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h
Bicolor damselfish	MODERN SPECIES	589										fnbp1l (ENSSPAG00000010845)	bcar3 (ENSSPAG00000010816)	hps3 (ENSSPAG00000010730)	ttc14 (ENSSPAG00000010662)	fxr1 (ENSSPAG00000010538) #20	dnajc19 (ENSSPAG00000010504) #21	sox2 (ENSSPAG00000010494) #22
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000157937.b.d	ENSGT00940000155195	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000179565	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798
Spiny chromis	MODERN SPECIES	196																sox2 (ENSAPOG00000015558) #22	ENSAPOG00000015420	ATP11B (ENSAPOG00000015378) #23	mccc1 (ENSAPOG00000015283) #25	ENSAPOG00000015205 #26	ENSAPOG00000015181	PIK3CA (ENSAPOG00000015163)	ENSAPOG00000015037	ENSAPOG00000014994
Amphiprion	ANCESTRAL SPECIES	2								ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000179565	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798.k
Orange clownfish	MODERN SPECIES	11	rpe65c (ENSAPEG00000015903)	ENSAPEG00000015890	ENSAPEG00000015867	ENSAPEG00000015825	ENSAPEG00000015712	ENSAPEG00000015659	ENSAPEG00000015646	si:ch211-198n5.11 (ENSAPEG00000015606)	fnbp1l (ENSAPEG00000015551)	bcar3 (ENSAPEG00000015457)	ENSAPEG00000015442	hps3 (ENSAPEG00000015313)	ttc14 (ENSAPEG00000015072)	fxr1 (ENSAPEG00000014981) #20	dnajc19 (ENSAPEG00000014945) #21	sox2 (ENSAPEG00000014838) #22	ATP11B (ENSAPEG00000014737) #23	mccc1 (ENSAPEG00000014712) #25	ENSAPEG00000014683 #26	kng1 (ENSAPEG00000014666)	PIK3CA (ENSAPEG00000014601)	ENSAPEG00000014580	ZMAT3 (ENSAPEG00000014553)	ENSAPEG00000014504	ENSAPEG00000014456	stxbp3 (ENSAPEG00000014381)	ENSAPEG00000014335	ENSAPEG00000014318	ENSAPEG00000014292	ENSAPEG00000014261	ENSAPEG00000014238
Clown anemonefish	MODERN SPECIES	2382																sox2 (ENSAOCG00000010950) #22
Cichlidae	ANCESTRAL SPECIES	42	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT01000000216191	ENSGT00460000041630	ENSGT00940000154507.t	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B
Midas cichlid	MODERN SPECIES	487			ENSACIG00000023496	ENSACIG00000023493	aspm (ENSACIG00000023479)	depdc1a (ENSACIG00000023461)	rpe65c (ENSACIG00000023446)	si:ch211-198n5.11 (ENSACIG00000023426)	fnbp1l (ENSACIG00000023410)	bcar3 (ENSACIG00000023397)	cd248a (ENSACIG00000023389)	hps3 (ENSACIG00000023368)	ttc14 (ENSACIG00000023360)	fxr1 (ENSACIG00000023354) #20	dnajc19 (ENSACIG00000023350) #21	sox2 (ENSACIG00000023348) #22	ENSACIG00000023342	ATP11B (ENSACIG00000023329) #23	mccc1 (ENSACIG00000023146) #25	ENSACIG00000023097	ENSACIG00000023068	PIK3CA (ENSACIG00000023052)	ZMAT3 (ENSACIG00000023037)	ENSACIG00000023030	stxbp3 (ENSACIG00000022914)	ENSACIG00000022889
Pseudocrenilabrinae	ANCESTRAL SPECIES	23	ENSGT00940000174597	ENSGT00940000154967.a.b.a.b.`b.b	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798
Nile tilapia	MODERN SPECIES	8	rpe65b (ENSONIG00000003773)	si:ch211-198n5.11 (ENSONIG00000003770)	fnbp1l (ENSONIG00000003764)	bcar3 (ENSONIG00000003760)	hps3 (ENSONIG00000003752)	ENSONIG00000027731	b3gat1a (ENSONIG00000003750)	ENSONIG00000035489	ENSONIG00000041410	ENSONIG00000029705	ENSONIG00000029296	ttc14 (ENSONIG00000003747)	ENSONIG00000032390	fxr1 (ENSONIG00000003740) #20	dnajc19 (ENSONIG00000027409) #21	sox2 (ENSONIG00000039405) #22	ENSONIG00000021316	ATP11B (ENSONIG00000003733) #23	ENSONIG00000028245	ENSONIG00000015024	mccc1 (ENSONIG00000008395) #25	ENSONIG00000037606 #26	ENSONIG00000008390	ENSONIG00000027371	ENSONIG00000008388	PIK3CA (ENSONIG00000008379)	ENSONIG00000008378	ENSONIG00000041522	stxbp3 (ENSONIG00000008368)	ENSONIG00000036868	ENSONIG00000043187
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a.k	ENSGT00940000174597	ENSGT00950000182866.D.d.a.c.b.a.a.a.a.a.a.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798
Lyretail cichlid	MODERN SPECIES	343	ENSNBRG00000021698	ENSNBRG00000021687	ENSNBRG00000021666	ENSNBRG00000021649	NXPE3 (ENSNBRG00000021635)	ENSNBRG00000021574	depdc1a (ENSNBRG00000021479)	rpe65b (ENSNBRG00000021436)	si:ch211-198n5.11 (ENSNBRG00000021401)	fnbp1l (ENSNBRG00000021354)	bcar3 (ENSNBRG00000021258)	hps3 (ENSNBRG00000021182)	ttc14 (ENSNBRG00000021095)	fxr1 (ENSNBRG00000021072) #20	dnajc19 (ENSNBRG00000021053) #21	sox2 (ENSNBRG00000021046) #22	ENSNBRG00000021036	ENSNBRG00000021026	ATP11B (ENSNBRG00000020967) #23	ENSNBRG00000020946	ENSNBRG00000020924	ENSNBRG00000020902	ZMAT3 (ENSNBRG00000020886)	ENSNBRG00000020876	PIK3CA (ENSNBRG00000020832)	ENSNBRG00000020823	stxbp3 (ENSNBRG00000020763)	FNDC7 (ENSNBRG00000020687)	ENSNBRG00000020673	ENSNBRG00000020660	henmt1 (ENSNBRG00000020636)
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a.l	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458.i	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000154967.b.b.a.l	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458.i	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798
P. nyererei	MODERN SPECIES	367													ttc14 (ENSPNYG00000014013)	fxr1 (ENSPNYG00000014047) #20	dnajc19 (ENSPNYG00000014103) #21	sox2 (ENSPNYG00000014128) #22	ENSPNYG00000014137	ATP11B (ENSPNYG00000014182) #23	ENSPNYG00000014255 #25	ENSPNYG00000014271 #26	ENSPNYG00000014294	ENSPNYG00000014339	ZMAT3 (ENSPNYG00000014350)	PIK3CA (ENSPNYG00000014370)	ENSPNYG00000014435	ENSPNYG00000014452	stxbp3 (ENSPNYG00000014469)	FNDC7 (ENSPNYG00000014503)	ENSPNYG00000014551	ENSPNYG00000014563	henmt1 (ENSPNYG00000014586)
Haplochromini_B	ANCESTRAL SPECIES	32	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a.k.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458.i	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00530000064692.B.b.a.d.a.a.a.b	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a
Eastern happy	MODERN SPECIES	8	ENSACLG00000025380	ENSACLG00000025388	ENSACLG00000025399	aspm (ENSACLG00000025411)	depdc1a (ENSACLG00000025455)	rpe65b (ENSACLG00000025478)	si:ch211-198n5.11 (ENSACLG00000025517)	fnbp1l (ENSACLG00000025531)	bcar3 (ENSACLG00000025641)	hps3 (ENSACLG00000025702)	ENSACLG00000025760	ENSACLG00000025775	ttc14 (ENSACLG00000025782)	fxr1 (ENSACLG00000025812) #20	dnajc19 (ENSACLG00000025865) #21	sox2 (ENSACLG00000025897) #22	ENSACLG00000025903	ENSACLG00000025904	ENSACLG00000025909	ENSACLG00000025947	ENSACLG00000025953	ATP11B (ENSACLG00000025964) #23	mccc1 (ENSACLG00000026110) #25	ENSACLG00000026175	ENSACLG00000026193	ENSACLG00000026226	ENSACLG00000026272	PIK3CA (ENSACLG00000026297)	ENSACLG00000026340	ENSACLG00000026341	ENSACLG00000026358
Zebra mbuna	MODERN SPECIES	1099	ENSMZEG00005015847	ENSMZEG00005015831	ENSMZEG00005015828	brinp3a.2 (ENSMZEG00005015813)	ENSMZEG00005015791	ENSMZEG00005015783	RGS13 (ENSMZEG00005015776)	ENSMZEG00005015771	uchl5 (ENSMZEG00005015751)	glrx2 (ENSMZEG00005015746)	b3galt2 (ENSMZEG00005015744)	hps3 (ENSMZEG00005015725)	ttc14 (ENSMZEG00005015709)	fxr1 (ENSMZEG00005015679) #20	dnajc19 (ENSMZEG00005015660) #21	sox2 (ENSMZEG00005015644) #22	ENSMZEG00005015637	ENSMZEG00005015589	ATP11B (ENSMZEG00005015554) #23	mccc1 (ENSMZEG00005015532) #25	ENSMZEG00005015524 #26	ENSMZEG00005015477	ENSMZEG00005015451	ENSMZEG00005015427	PIK3CA (ENSMZEG00005015395)	lrp8 (ENSMZEG00005015380)	slc26a5 (ENSMZEG00005015362)	ENSMZEG00005015351	tmed9 (ENSMZEG00005015327)	phyh (ENSMZEG00005015316)	ucmaa (ENSMZEG00005015312)
Burton s mouthbrooder	MODERN SPECIES	329													ttc14 (ENSHBUG00000004981)	fxr1 (ENSHBUG00000004901) #20	dnajc19 (ENSHBUG00000004787) #21	sox2 (ENSHBUG00000004735) #22	ENSHBUG00000000117	ATP11B (ENSHBUG00000004693) #23	mccc1 (ENSHBUG00000000956) #25	ENSHBUG00000004546 #26	ENSHBUG00000004522	ENSHBUG00000004414	ENSHBUG00000004401	PIK3CA (ENSHBUG00000004357)	ENSHBUG00000004293	ENSHBUG00000004261	stxbp3 (ENSHBUG00000004244)	FNDC7 (ENSHBUG00000004176)	ENSHBUG00000004146	henmt1 (ENSHBUG00000004089)	fam102bb (ENSHBUG00000004080)
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00390000004674.j	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00980000203290	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a	ENSGT00390000015318.b
Zig-zag eel	MODERN SPECIES	18	uchl5 (ENSMAMG00000013126)	glrx2 (ENSMAMG00000013113)	b3galt2 (ENSMAMG00000013098)	cfh (ENSMAMG00000012979)	ENSMAMG00000028004	aspm (ENSMAMG00000012926)	depdc1a (ENSMAMG00000012900)	ENSMAMG00000012864	si:ch211-198n5.11 (ENSMAMG00000012852)	ENSMAMG00000012800	ENSMAMG00000012752	ENSMAMG00000012718	ttc14 (ENSMAMG00000012687)	fxr1 (ENSMAMG00000012607) #20	dnajc19 (ENSMAMG00000012673) #21	sox2 (ENSMAMG00000012589) #22	ATP11B (ENSMAMG00000012551) #23	mccc1 (ENSMAMG00000012532) #25	ENSMAMG00000012509 #26	ENSMAMG00000012500	ENSMAMG00000012399	ENSMAMG00000012349	ENSMAMG00000012343	ENSMAMG00000012326	stxbp3 (ENSMAMG00000012303)	ENSMAMG00000012225	ENSMAMG00000012208	HENMT1 (ENSMAMG00000012144)	ENSMAMG00000012116	ENSMAMG00000025224	ENSMAMG00000012109
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000154967.b.b.b	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00980000203290	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a	ENSGT00390000015318.b
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	15	ENSBSLG00000009576	ENSBSLG00000009540	ENSBSLG00000009533	aspm (ENSBSLG00000009159)	depdc1a (ENSBSLG00000009033)	RPE65 (ENSBSLG00000008855)	si:ch211-198n5.11 (ENSBSLG00000008830)	fnbp1l (ENSBSLG00000008642)	bcar3 (ENSBSLG00000008468)	ENSBSLG00000008414	hps3 (ENSBSLG00000008206)	ttc14 (ENSBSLG00000008115)	fxr1 (ENSBSLG00000005633) #20	dnajc19 (ENSBSLG00000004844) #21	sox2 (ENSBSLG00000004745) #22	sox2 (ENSBSLG00000004255) #22	ATP11B (ENSBSLG00000003903) #23	mccc1 (ENSBSLG00000002699) #25	ENSBSLG00000002494 #26	ENSBSLG00000002480	PIK3CA (ENSBSLG00000002314)	ENSBSLG00000002185	ENSBSLG00000001857	ENSBSLG00000001848	ZMAT3 (ENSBSLG00000001831)	ENSBSLG00000001819	ENSBSLG00000001806	stxbp3 (ENSBSLG00000001607)	ENSBSLG00000001577	ENSBSLG00000001572	ENSBSLG00000001551
Siamese fighting fish	MODERN SPECIES	15	b3galt2 (ENSBSLG00000009583)	ENSBSLG00000009576	ENSBSLG00000009540	ENSBSLG00000009533	aspm (ENSBSLG00000009159)	depdc1a (ENSBSLG00000009033)	RPE65 (ENSBSLG00000008855)	si:ch211-198n5.11 (ENSBSLG00000008830)	fnbp1l (ENSBSLG00000008642)	bcar3 (ENSBSLG00000008468)	ENSBSLG00000008414	hps3 (ENSBSLG00000008206)	ttc14 (ENSBSLG00000008115)	fxr1 (ENSBSLG00000005633) #20	dnajc19 (ENSBSLG00000004844) #21	sox2 (ENSBSLG00000004745) #22	sox2 (ENSBSLG00000004255) #22	ATP11B (ENSBSLG00000003903) #23	mccc1 (ENSBSLG00000002699) #25	ENSBSLG00000002494 #26	ENSBSLG00000002480	PIK3CA (ENSBSLG00000002314)	ENSBSLG00000002185	ENSBSLG00000001857	ENSBSLG00000001848	ZMAT3 (ENSBSLG00000001831)	ENSBSLG00000001819	ENSBSLG00000001806	stxbp3 (ENSBSLG00000001607)	ENSBSLG00000001577	ENSBSLG00000001572
Carangaria	ANCESTRAL SPECIES	7	ENSGT00940000154386	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h
Pleuronectoidei	ANCESTRAL SPECIES	20	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154386	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT01000000216191	ENSGT00940000169190	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h
Turbot	MODERN SPECIES	3	ENSSMAG00000018628	ENSSMAG00000026125	aspm (ENSSMAG00000018889)	depdc1a (ENSSMAG00000019006)	ENSSMAG00000019019	ENSSMAG00000022429	si:ch211-198n5.11 (ENSSMAG00000019050)	ENSSMAG00000019085	ENSSMAG00000019102	ENSSMAG00000019148	ENSSMAG00000019215	ENSSMAG00000023012	ttc14 (ENSSMAG00000019224)	fxr1 (ENSSMAG00000019240) #20	dnajc19 (ENSSMAG00000019301) #21	sox2 (ENSSMAG00000019309) #22	ENSSMAG00000019337	ENSSMAG00000027499	ENSSMAG00000035807	ENSSMAG00000019363	ENSSMAG00000019381	stxbp3 (ENSSMAG00000019435)	ENSSMAG00000019460	ENSSMAG00000023351	ENSSMAG00000037924	ENSSMAG00000019534	ENSSMAG00000019540	ENSSMAG00000019551	kng1 (ENSSMAG00000019641)	ENSSMAG00000019667 #25	ENSSMAG00000019704 #23
Tongue sole	MODERN SPECIES	11	b3galt2 (ENSCSEG00000001829)	cfh (ENSCSEG00000001810)	ENSCSEG00000001805	aspm (ENSCSEG00000001749)	ENSCSEG00000001739	depdc1a (ENSCSEG00000001736)	rpe65b (ENSCSEG00000001723)	si:ch211-198n5.11 (ENSCSEG00000001712)	fnbp1l (ENSCSEG00000001689)	bcar3 (ENSCSEG00000001676)	hps3 (ENSCSEG00000001648)	ttc14 (ENSCSEG00000001645)	ENSCSEG00000001642	dnajc19 (ENSCSEG00000001630) #21	fxr1 (ENSCSEG00000001597) #20	sox2 (ENSCSEG00000001590) #22	ATP11B (ENSCSEG00000001572) #23	ENSCSEG00000001563	ENSCSEG00000001559	PATJ (ENSCSEG00000001551)	tm2d1 (ENSCSEG00000001546)	nfia (ENSCSEG00000001541)	frem1b (ENSCSEG00000001512)	SAMD9 (ENSCSEG00000001506)	ttll9 (ENSCSEG00000001500)	nrd1b (ENSCSEG00000001310)	RAB3B (ENSCSEG00000001290)	ENSCSEG00000001287	ENSCSEG00000001281	orc1 (ENSCSEG00000001275)	prpf38a (ENSCSEG00000001269)
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00980000199212	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a
Barramundi perch	MODERN SPECIES	388													ENSLCAG00010002617	fxr1 (ENSLCAG00010002622) #20	dnajc19 (ENSLCAG00010002626) #21	sox2 (ENSLCAG00010002633) #22	ATP11B (ENSLCAG00010002723) #23
Seriola	ANCESTRAL SPECIES		ENSGT00940000154967.b.b.b	ENSGT00980000199212	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a
Yellowtail amberjack	MODERN SPECIES	3176	b3galt2 (ENSSLDG00000017900)	cfhl1 (ENSSLDG00000017908)	ENSSLDG00000017934	ENSSLDG00000017953	aspm (ENSSLDG00000017974)	depdc1a (ENSSLDG00000018016)	rpe65b (ENSSLDG00000018072)	si:ch211-198n5.11 (ENSSLDG00000018130)	fnbp1l (ENSSLDG00000018163)	bcar3 (ENSSLDG00000018222)	hps3 (ENSSLDG00000018261)	ENSSLDG00000018350	ENSSLDG00000018364	fxr1 (ENSSLDG00000018386) #20	dnajc19 (ENSSLDG00000018409) #21	sox2 (ENSSLDG00000018420) #22	ATP11B (ENSSLDG00000018445) #23	mccc1 (ENSSLDG00000018498) #25	ENSSLDG00000018523 #26	ENSSLDG00000018538	PIK3CA (ENSSLDG00000018558)	ENSSLDG00000018593	ENSSLDG00000018611	ENSSLDG00000018641	ENSSLDG00000018661	stxbp3 (ENSSLDG00000018702)	FNDC7 (ENSSLDG00000018747)	ENSSLDG00000018774	ENSSLDG00000018793	ENSSLDG00000018819	ENSSLDG00000018867
Greater amberjack	MODERN SPECIES				aspm (ENSSDUG00000017053)	depdc1a (ENSSDUG00000017031)	rpe65b (ENSSDUG00000016938)	si:ch211-198n5.11 (ENSSDUG00000016890)	fnbp1l (ENSSDUG00000016812)	ENSSDUG00000016801	bcar3 (ENSSDUG00000016748)	hps3 (ENSSDUG00000016706)	ENSSDUG00000016687	ttc14 (ENSSDUG00000016642)	ENSSDUG00000016630	fxr1 (ENSSDUG00000016557) #20	dnajc19 (ENSSDUG00000016541) #21	sox2 (ENSSDUG00000016532) #22	ATP11B (ENSSDUG00000016508) #23	mccc1 (ENSSDUG00000016424) #25	ENSSDUG00000016401 #26	ENSSDUG00000016284	PIK3CA (ENSSDUG00000016208)	ZMAT3 (ENSSDUG00000016188)	ENSSDUG00000016156	ENSSDUG00000016127	stxbp3 (ENSSDUG00000016067)	ENSSDUG00000016050	ENSSDUG00000015941	henmt1 (ENSSDUG00000015914)	fam102bb (ENSSDUG00000015867)	slc25a24 (ENSSDUG00000015831)	tmem69 (ENSSDUG00000015817)
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00940000154386	ENSGT00940000174597	ENSGT00940000154967.b.b.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00950000183044.a.b	ENSGT00390000004681.a.a	ENSGT00940000154573	ENSGT00740000115898	ENSGT00940000156211.a.a	ENSGT00440000033640.h.b	ENSGT00940000162303.a.a	ENSGT00940000163866.a.b	ENSGT00940000162937.a.a	ENSGT00390000010872	ENSGT00940000166222	ENSGT00940000157153.x	ENSGT00390000013701	ENSGT00950000183189.a.b.a.h #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C.f #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h
Fugu	MODERN SPECIES	12	GFUS (ENSTRUG00000006484)	serpinb1 (ENSTRUG00000006831)	MYLK4 (ENSTRUG00000007027)	gmds (ENSTRUG00000023830)	foxc1b (ENSTRUG00000007340)	ENSTRUG00000007367	foxq1b (ENSTRUG00000001789)	exoc2 (ENSTRUG00000001810)	ENSTRUG00000021519	ENSTRUG00000002946	ENSTRUG00000003462	ENSTRUG00000026690	ttc14 (ENSTRUG00000001224)	fxr1 (ENSTRUG00000003486) #20	dnajc19 (ENSTRUG00000004352) #21	sox2 (ENSTRUG00000004861) #22	ENSTRUG00000031205 #23	ATP11B (ENSTRUG00000002878) #23	ENSTRUG00000033406 #23	mccc1 (ENSTRUG00000003436) #25	ENSTRUG00000024510 #26	ENSTRUG00000003951	PIK3CA (ENSTRUG00000004021)	ENSTRUG00000031285	ENSTRUG00000020845	ENSTRUG00000005137	stxbp3 (ENSTRUG00000005412)	FNDC7 (ENSTRUG00000006252)	ENSTRUG00000029469	ENSTRUG00000030298	ENSTRUG00000030385
Tetraodon	MODERN SPECIES		pycr3 (ENSTNIG00000008231)	GFUS (ENSTNIG00000008228)	ENSTNIG00000008227	GFUS (ENSTNIG00000008230)	SERPINB1 (ENSTNIG00000008229)	MYLK4 (ENSTNIG00000008226)	gmds (ENSTNIG00000008225)	foxc1b (ENSTNIG00000001080)	ENSTNIG00000008224	exoc2 (ENSTNIG00000008223)	ENSTNIG00000008222	ENSTNIG00000004324	ttc14 (ENSTNIG00000003789)	fxr1 (ENSTNIG00000003790) #20	dnajc19 (ENSTNIG00000003791) #21	sox2 (ENSTNIG00000003970) #22	ATP11B (ENSTNIG00000006777) #23	mccc1 (ENSTNIG00000006778) #25	ENSTNIG00000006779	PIK3CA (ENSTNIG00000006780)	ZMAT3 (ENSTNIG00000006781)	ENSTNIG00000006782	ENSTNIG00000006783	stxbp3 (ENSTNIG00000006784)	ENSTNIG00000006785	ENSTNIG00000006982	ENSTNIG00000006786	ENSTNIG00000005506	henmt1 (ENSTNIG00000003313)	EEIG2 (ENSTNIG00000003314)	slc25a24 (ENSTNIG00000003315)
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154967.b.b.b	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h
Ballan wrasse	MODERN SPECIES	620														ttc14 (ENSLBEG00000015175)	fxr1 (ENSLBEG00000015038) #20	sox2 (ENSLBEG00000014895) #22
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a
Perciformes	ANCESTRAL SPECIES	8	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a	ENSGT00390000015318.b
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000174597	ENSGT00940000154386	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT01000000216191	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b
Lumpfish	MODERN SPECIES	19	ENSCLMG00005016696	aspm (ENSCLMG00005016693)	depdc1a (ENSCLMG00005016687)	rpe65b (ENSCLMG00005016684)	si:ch211-198n5.11 (ENSCLMG00005016678)	fnbp1l (ENSCLMG00005016346)	bcar3 (ENSCLMG00005016124)	ENSCLMG00005016123	hps3 (ENSCLMG00005016121)	ENSCLMG00005016120	ENSCLMG00005016119	ttc14 (ENSCLMG00005016117)	ENSCLMG00005016115	fxr1 (ENSCLMG00005015995) #20	dnajc19 (ENSCLMG00005015992) #21	sox2 (ENSCLMG00005015991) #22	ENSCLMG00005015990	ATP11B (ENSCLMG00005014101) #23	mccc1 (ENSCLMG00005011992) #25	ENSCLMG00005011979	ENSCLMG00005011978	PIK3CA (ENSCLMG00005011927)	ZMAT3 (ENSCLMG00005011814)	ENSCLMG00005011810	ENSCLMG00005011809	ENSCLMG00005011807	lrrc40 (ENSCLMG00005011804)	ENSCLMG00005011803	ENSCLMG00005011801	sass6 (ENSCLMG00005011708)	LRRC24 (ENSCLMG00005011705)
Stickleback	MODERN SPECIES	8	ENSGACG00000005911	ENSGACG00000005919	depdc1a (ENSGACG00000005920)	rpe65b (ENSGACG00000005930)	si:ch211-198n5.11 (ENSGACG00000005939)	fnbp1l (ENSGACG00000005948)	bcar3 (ENSGACG00000005999)	ENSGACG00000006012	hps3 (ENSGACG00000006016)	ttc14 (ENSGACG00000006030)	ENSGACG00000006044	ENSGACG00000006048	fxr1 (ENSGACG00000006052) #20	dnajc19 (ENSGACG00000006076) #21	ENSGACG00000006099	sox2 (ENSGACG00000006100) #22	ATP11B (ENSGACG00000006104) #23	mccc1 (ENSGACG00000006125) #25	ENSGACG00000006138	PIK3CA (ENSGACG00000006156)	ZMAT3 (ENSGACG00000006175)	ENSGACG00000006180	LRRC7 (ENSGACG00000006189)	ENSGACG00000006210	ENSGACG00000006216	MELTF (ENSGACG00000006222)	fkbp2 (ENSGACG00000006229)	NCBP2AS2 (ENSGACG00000006237)	ncbp2 (ENSGACG00000006238)	ENSGACG00000006258	cp (ENSGACG00000006285)
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00940000164211	ENSGT00940000155117.f.a	ENSGT00940000154386	ENSGT00940000174597	ENSGT00560000077332	ENSGT00950000182976.b.a	ENSGT00950000182913.B.f	ENSGT00940000164186.a	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a
European seabass	MODERN SPECIES	17	ENSDLAG00005007930	stxbp3 (ENSDLAG00005006702)	ENSDLAG00005006642	ENSDLAG00005006638	ENSDLAG00005029063	ENSDLAG00005006577	ENSDLAG00005006557	ENSDLAG00005006545 #26	ENSDLAG00005034823	ENSDLAG00005006459	ENSDLAG00005021297	ENSDLAG00005027302	ttc14 (ENSDLAG00005021228)	fxr1 (ENSDLAG00005020320) #20	dnajc19 (ENSDLAG00005029415) #21	sox2 (ENSDLAG00005034867) #22	ATP11B (ENSDLAG00005017428) #23	mccc1 (ENSDLAG00005019674) #25	si:ch211-198n5.11 (ENSDLAG00005027011)	ENSDLAG00005016891	depdc1a (ENSDLAG00005016845)	aspm (ENSDLAG00005016604)	ENSDLAG00005028523	ENSDLAG00005030889	ENSDLAG00005016552	b3galt2 (ENSDLAG00005028575)	uchl5 (ENSDLAG00005016459)	ENSDLAG00005016445	RGS13 (ENSDLAG00005028322)	ENSDLAG00005016412	RGS1 (ENSDLAG00005016393)
Large yellow croaker	MODERN SPECIES	489	ENSLCRG00005009630	ebna1bp2 (ENSLCRG00005009633)	TMEM125 (ENSLCRG00005009641)	ap1m3 (ENSLCRG00005009670)	tie1 (ENSLCRG00005010424)	mpl (ENSLCRG00005011070)	DDAH1 (ENSLCRG00005011074)	ccn1 (ENSLCRG00005011076)	ZNHIT6 (ENSLCRG00005011077)	ENSLCRG00005011082	hps3 (ENSLCRG00005011090)	ENSLCRG00005011092	ttc14 (ENSLCRG00005011096)	fxr1 (ENSLCRG00005011130) #20	dnajc19 (ENSLCRG00005014678) #21	sox2 (ENSLCRG00005014679) #22	ATP11B (ENSLCRG00005014687) #23	mccc1 (ENSLCRG00005015122) #25	ENSLCRG00005017408 #26	ENSLCRG00005017410	ENSLCRG00005017411	PIK3CA (ENSLCRG00005017419)	ENSLCRG00005017430	RNF14 (ENSLCRG00005017434)	ENSLCRG00005017436	stxbp3 (ENSLCRG00005017443)	ENSLCRG00005017550	ENSLCRG00005017551	eaf2 (ENSLCRG00005017553)	si:dkey-91i10.2 (ENSLCRG00005017555)	tsn (ENSLCRG00005017556)
Gilthead seabream	MODERN SPECIES	2	ENSSAUG00010012400	ENSSAUG00010012399	ENSSAUG00010012390	ENSSAUG00010012381	aspm (ENSSAUG00010012325)	depdc1a (ENSSAUG00010012316)	si:ch211-198n5.11 (ENSSAUG00010012112)	rpe65b (ENSSAUG00010012087)	fnbp1l (ENSSAUG00010012084)	bcar3 (ENSSAUG00010011607)	hps3 (ENSSAUG00010011586)	ttc14 (ENSSAUG00010011576)	fxr1 (ENSSAUG00010007117) #20	Tim14 (ENSSAUG00010007093) #21	ENSSAUG00010007090	sox2 (ENSSAUG00010007089) #22	ATP11B (ENSSAUG00010006965) #23	mccc1 (ENSSAUG00010002097) #25	ENSSAUG00010001984 #26	ENSSAUG00010001979	PIK3CA (ENSSAUG00010001967)	ENSSAUG00010001961	ENSSAUG00010001957	ENSSAUG00010001956	ENSSAUG00010001893	stxbp3 (ENSSAUG00010001436)	FNDC7 (ENSSAUG00010001386)	ENSSAUG00010001377	ENSSAUG00010001364	ENSSAUG00010001354	ENSSAUG00010001347
Otomorpha	ANCESTRAL SPECIES	134	ENSGT00390000018195	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00940000174617	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00940000169190	ENSGT00940000153783.b.b.c.b	ENSGT00550000074917	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00940000159676.a #28	ENSGT00940000161734 #27	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c
Otophysi	ANCESTRAL SPECIES	198	ENSGT00390000018195	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00940000174617	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00390000018319.a.b.b.b.b	ENSGT00940000160221.c	ENSGT00940000165866
Cyprinoidei	ANCESTRAL SPECIES	17	ENSGT00940000165367	ENSGT00390000018195	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00390000018319.a.b.b.b.b	ENSGT00940000160221.c	ENSGT00940000165866	ENSGT00940000155631
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	21	rapgef4b (ENSDARG00000075924)	map3k20a (ENSDARG00000044615)	tuba8l4 (ENSDARG00000006260)	si:ch211-114n24.6 (ENSDARG00000036700)	bin1b (ENSDARG00000058820)	ihhb (ENSDARG00000058815)	nhej1 (ENSDARG00000058893)	atg3 (ENSDARG00000009350)	GPR161 (ENSDARG00000058903)	HS6ST3 (ENSDARG00000071217)	ENSDARG00000058906	dzip1 (ENSDARG00000000943)	ENSDARG00000058930	cldn10a (ENSDARG00000058937)	abcc4 (ENSDARG00000058953)	sox21a (ENSDARG00000031664) #22	ccdc65 (ENSDARG00000032005)	fkbp11 (ENSDARG00000037000)	arf3b (ENSDARG00000036998)	ERBB3 (ENSDARG00000006202)	pa2g4a (ENSDARG00000039578)	MYH10 (ENSDARG00000000103)	ubn2a (ENSDARG00000063062)	ttc26 (ENSDARG00000012039)	rpsa (ENSDARG00000019181)	slc25a38b (ENSDARG00000074533)	myh9a (ENSDARG00000063295)	PLPPR2 (ENSDARG00000044600)	palm3 (ENSDARG00000071215)	ENSDARG00000090793	klf1 (ENSDARG00000017400)
Zebrafish	MODERN SPECIES	14	tm4sf18 (ENSDARG00000060668)	tm4sf4 (ENSDARG00000040747)	wwtr1 (ENSDARG00000067719)	commd2 (ENSDARG00000003373)	ENSDARG00000070958	kcnh1b (ENSDARG00000023236)	ENSDARG00000053973	ahsg1 (ENSDARG00000026764)	ppp1r2 (ENSDARG00000054007)	acap2b (ENSDARG00000060783)	htr2b (ENSDARG00000115925)	psmd1 (ENSDARG00000003189)	ttc14 (ENSDARG00000013845)	fxr1 (ENSDARG00000022968) #20	dnajc19 (ENSDARG00000044420) #21	sox2 (ENSDARG00000070913) #22	ATP11B (ENSDARG00000101094) #23	ENSDARG00000096237	si:dkey-37m8.11 (ENSDARG00000040230)	ENSDARG00000096423	trim35-20 (ENSDARG00000070847)	mccc1 (ENSDARG00000102538) #25	kng1 (ENSDARG00000022372)	CARTPT (ENSDARG00000070930)	MAP1S (ENSDARG00000060805)	ENSDARG00000089661	acy1 (ENSDARG00000038475)	ACY1 (ENSDARG00000111129)	ENSDARG00000095913	trim35-34 (ENSDARG00000022271)	ENSDARG00000060838
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	20	ENSGT00940000153431.b.l	ENSGT00940000154866.B.b.a	ENSGT00940000156075.a.b.d	ENSGT00940000163262.b	ENSGT00940000161352.f.b.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.b.b	ENSGT00950000183165.b.a.e.a	ENSGT00950000182882.A.b.b.f.b	ENSGT00940000164444.b.b	ENSGT00390000009940	ENSGT00390000010308.a	ENSGT00950000182900.C.x	ENSGT00950000183071.a.a.a.e.b.g.b	ENSGT00940000156862.u	ENSGT00940000153931.b.b.a	ENSGT00940000160614.q.a #22	ENSGT01000000218756	ENSGT00940000159521.p	ENSGT00950000183080.a.a.e.b.d.b.b	ENSGT00940000156107.e.b.o	ENSGT00940000154281.a	ENSGT00940000155159.C.fb	ENSGT00940000155858.f.a	ENSGT00390000000159.h	ENSGT00550000075117.m.a.g.a	ENSGT00940000155632.p.m	ENSGT00940000158145.a.d.b	ENSGT00390000009016	ENSGT00940000158145.a.d.a.b	ENSGT00990000204330.b	ENSGT00940000154739.A.b
Cyprininae_a	ANCESTRAL SPECIES	13	ENSGT00390000006916.c.r.b	ENSGT00940000153431.b.l	ENSGT00940000154866.B.b.a	ENSGT00940000156075.a.b.d	ENSGT00940000161352.f.b.a.b	ENSGT00940000161352.f.b.a.a	ENSGT00950000183165.b.a.e.b.d.a.a.b.b	ENSGT00950000183165.b.a.e.a	ENSGT00950000182882.A.b.b.f.b	ENSGT00940000164444.b.b	ENSGT00390000009940.d	ENSGT00390000010308.a	ENSGT00950000183071.a.a.a.e.b.g.b	ENSGT00940000156862.u	ENSGT00940000153931.b.b.a	ENSGT00940000160614.q.a #22	ENSGT01000000218756	ENSGT00940000159521.p	ENSGT00950000183080.a.a.e.b.d.b.b	ENSGT00940000156107.e.b.o	ENSGT00940000154281.a	ENSGT00940000155159.C.fb	ENSGT00940000155858.f.a	ENSGT00390000000159.h	ENSGT00550000075117.m.a.g.a	ENSGT00940000155632.p.m	ENSGT00940000158145.a.d.a.b	ENSGT00990000204330.b	ENSGT00940000154739.A.b	ENSGT00940000163957.e.b.t	ENSGT00940000164108.a.a.f.b.a
Golden-line barbel	MODERN SPECIES	436	ENSSGRG00000055144	rapgef4b (ENSSGRG00000055136)	ENSSGRG00000055134	tuba8l4 (ENSSGRG00000055130)	bin1b (ENSSGRG00000055128)	ihhb (ENSSGRG00000055127)	nhej1 (ENSSGRG00000055126)	atg3 (ENSSGRG00000055125)	GPR161 (ENSSGRG00000055123)	ENSSGRG00000055122	dzip1 (ENSSGRG00000055121)	ENSSGRG00000055120	ENSSGRG00000055119	cldn10a (ENSSGRG00000055118)	abcc4 (ENSSGRG00000055116)	sox21a (ENSSGRG00000055115) #22	ENSSGRG00000055114	fkbp11 (ENSSGRG00000055113)	arf3b (ENSSGRG00000055112)	ENSSGRG00000055111	ENSSGRG00000055109	MYH10 (ENSSGRG00000055067)	ubn2a (ENSSGRG00000055036)	ttc26 (ENSSGRG00000055026)	myh9a (ENSSGRG00000054871)	PLPPR2 (ENSSGRG00000054750)	ENSSGRG00000054749	ENSSGRG00000054748	klf1 (ENSSGRG00000054746)	nfil3-3 (ENSSGRG00000054745)	nfil3-5 (ENSSGRG00000054744)
Goldfish	MODERN SPECIES	24	ccdc85al (ENSCARG00000011373)	sec23b (ENSCARG00000011302)	dtd1 (ENSCARG00000011273)	RIN2 (ENSCARG00000011249)	rapgef4b (ENSCARG00000009479)	map3k20a (ENSCARG00000009371)	tuba8l4 (ENSCARG00000009345)	bin1b (ENSCARG00000008792)	ihhb (ENSCARG00000008737)	atg3 (ENSCARG00000008692)	ENSCARG00000006929	ENSCARG00000006859	dzip1 (ENSCARG00000006825)	cldn10a (ENSCARG00000006817)	abcc4 (ENSCARG00000005912)	sox21a (ENSCARG00000005829) #22	ENSCARG00000044386	fkbp11 (ENSCARG00000044339)	arf3b (ENSCARG00000044305)	ERBB3 (ENSCARG00000040804)	pa2g4a (ENSCARG00000040036)	ENSCARG00000038116	ttc26 (ENSCARG00000037540)	ENSCARG00000037452	slc25a38b (ENSCARG00000037394)	myh9a (ENSCARG00000036561)	ENSCARG00000036492	ENSCARG00000036464	ENSCARG00000036458	klf1 (ENSCARG00000036443)	nfil3-3 (ENSCARG00000036435)
Cyprininae	ANCESTRAL SPECIES	23	ENSGT00940000153431.b.k	ENSGT00940000154866.B.b.b	ENSGT00940000156075.a.b.c	ENSGT00940000161352.f.b.b	ENSGT00950000182882.A.b.b.f.a	ENSGT00940000164444.b.a	ENSGT00390000010308.b	ENSGT00940000157829.m.a	ENSGT00950000183071.a.a.a.e.b.g.a	ENSGT00940000155232.t.a.b.b.l	ENSGT00940000156862.v	ENSGT00940000155232.t.a.b.b.k	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.b	ENSGT00940000160614.q.b #22	ENSGT00940000153804.B	ENSGT00940000159521.o	ENSGT00950000183080.a.a.e.b.d.b.a	ENSGT00940000156107.e.b.p	ENSGT00940000154281.b	ENSGT00940000155159.C.eb	ENSGT00940000155858.f.b	ENSGT00390000000159.g	ENSGT00950000183099	ENSGT00550000075117.m.a.g.b	ENSGT00940000155632.p.n	ENSGT00940000158145.a.d.a.a	ENSGT00990000204330.a	ENSGT00990000204498	ENSGT00940000163957.e.b.s
Goldfish	MODERN SPECIES	46	rapgef4b (ENSCARG00000022768)	map3k20a (ENSCARG00000027305)	ENSCARG00000027388	bin1b (ENSCARG00000027455)	ihhb (ENSCARG00000027508)	ENSCARG00000027533	ENSCARG00000027546	atg3 (ENSCARG00000027561)	GPR161 (ENSCARG00000027845)	ENSCARG00000027847	CLDN10 (ENSCARG00000027866)	dzip1 (ENSCARG00000027970)	CLDN10 (ENSCARG00000027987)	ENSCARG00000027999	ABCC4 (ENSCARG00000028129)	sox21a (ENSCARG00000031074) #22	ccdc65 (ENSCARG00000031079)	fkbp11 (ENSCARG00000031119)	arf3b (ENSCARG00000031131)	ERBB3 (ENSCARG00000031212)	pa2g4a (ENSCARG00000033971)	MYH10 (ENSCARG00000034668)	ubn2a (ENSCARG00000036196)	ttc26 (ENSCARG00000036331)	rpsa (ENSCARG00000036434)	slc25a38b (ENSCARG00000036476)	myh9a (ENSCARG00000036546)	PLPPR2 (ENSCARG00000037670)	ENSCARG00000037740	ENSCARG00000037780	klf1 (ENSCARG00000037807)
Cyprininae_a	ANCESTRAL SPECIES	30	ENSGT00940000154866.B.b.b	ENSGT00940000156075.a.b.c	ENSGT00940000161352.f.b.b	ENSGT00950000182882.A.b.b.f.a	ENSGT00940000164444.b.a	ENSGT00390000009940.c	ENSGT00390000010308.b	ENSGT00940000157829.m.a	ENSGT00950000183071.a.a.a.e.b.g.a	ENSGT00940000155232.t.a.b.b.l	ENSGT00940000156862.v	ENSGT00940000155232.t.a.b.b.k	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.b	ENSGT00940000160614.q.b #22	ENSGT00940000153804.B	ENSGT00940000159521.o	ENSGT00950000183080.a.a.e.b.d.b.a	ENSGT00940000156107.e.b.p	ENSGT00940000154281.b	ENSGT00940000155159.C.eb	ENSGT00940000155858.f.b	ENSGT00390000000159.g	ENSGT00950000183099	ENSGT00550000075117.m.a.g.b	ENSGT00940000155632.p.n	ENSGT00940000158145.a.d.a.a	ENSGT00990000204330.a	ENSGT00990000204498	ENSGT00940000163957.e.b.s
Golden-line barbel	MODERN SPECIES	33	si:ch211-114n24.6 (ENSSGRG00000047658)	bin1b (ENSSGRG00000047843)	ihhb (ENSSGRG00000047845)	nhej1 (ENSSGRG00000047848)	ENSSGRG00000047849	ENSSGRG00000047851	atg3 (ENSSGRG00000047856)	ENSSGRG00000047904	ENSSGRG00000047905	CLDN10 (ENSSGRG00000047906)	dzip1 (ENSSGRG00000047907)	CLDN10 (ENSSGRG00000047908)	ENSSGRG00000047911	cldn10a (ENSSGRG00000047912)	abcc4 (ENSSGRG00000047917)	sox21a (ENSSGRG00000047976) #22	ENSSGRG00000047977	fkbp11 (ENSSGRG00000047978)	arf3b (ENSSGRG00000047979)	ENSSGRG00000047981	pa2g4a (ENSSGRG00000048017)	ENSSGRG00000048314	ubn2a (ENSSGRG00000048755)	ttc26 (ENSSGRG00000048757)	rpsa (ENSSGRG00000048759)	myh9a (ENSSGRG00000048804)	PLPPR2 (ENSSGRG00000049128)	ENSSGRG00000049129	ENSSGRG00000049130	klf1 (ENSSGRG00000049131)	nfil3-3 (ENSSGRG00000049132)
Common carp reference	MODERN SPECIES	10	map3k20a (ENSCCRG00000051412)	tuba8l4 (ENSCCRG00000034597)	si:ch211-114n24.6 (ENSCCRG00000030481)	bin1b (ENSCCRG00000030674)	ihhb (ENSCCRG00000030683)	ENSCCRG00000016734	nhej1 (ENSCCRG00000030548)	atg3 (ENSCCRG00000036537)	ENSCCRG00000001354	ENSCCRG00000049196	ENSCCRG00000049167	dzip1 (ENSCCRG00000049082)	ENSCCRG00000049055	ENSCCRG00000048277	abcc4 (ENSCCRG00000048266)	sox21a (ENSCCRG00000074247) #22	ccdc65 (ENSCCRG00000048296)	fkbp11 (ENSCCRG00000048288)	arf3b (ENSCCRG00000076456)	ENSCCRG00000034393	pa2g4a (ENSCCRG00000072344)	ENSCCRG00000082075	ubn2a (ENSCCRG00000067831)	ttc26 (ENSCCRG00000046966)	rpsa (ENSCCRG00000056785)	slc25a38b (ENSCCRG00000082786)	myh9a (ENSCCRG00000033862)	ENSCCRG00000078482	ENSCCRG00000049504	ENSCCRG00000062849	ENSCCRG00000080386
Cyprininae	ANCESTRAL SPECIES	472												ENSGT01050000244937.a.b.b.l	ENSGT00940000153386.A.l	ENSGT00950000183189.a.b.a.b #20	ENSGT00940000154384.b #21	ENSGT00940000160614.r #22	ENSGT00940000156162.C.b #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a.b #26	ENSGT00950000182930.B.f	ENSGT00390000018319.a.b.b.b.b.b	ENSGT00940000160221.c.d	ENSGT00940000165866	ENSGT00940000155631.j	ENSGT00390000005351.p	ENSGT00940000155781.q.b	ENSGT00950000183146.b.b.b	ENSGT01030000234648.a.a.c.a.e	ENSGT00390000001505.e	ENSGT00390000008429.e.a.d	ENSGT00940000159711.i
Cyprininae_a	ANCESTRAL SPECIES	300	ENSGT00940000158024.C.e.a	ENSGT00940000165367	ENSGT00390000018195	ENSGT00390000018026.b	ENSGT00940000157606.n	ENSGT00940000163473.i.d	ENSGT00390000015492.B.f	ENSGT00950000183063.c.b.b.f	ENSGT00950000183063.c.b.a.z	ENSGT00390000004757.b	ENSGT00940000156389.a.r	ENSGT01050000244937.a.b.b.l	ENSGT00940000153386.A.l	ENSGT00950000183189.a.b.a.b #20	ENSGT00940000154384.b #21	ENSGT00940000160614.r #22	ENSGT00940000156162.C.b #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a.b #26	ENSGT00950000182930.B.f	ENSGT00390000018319.a.b.b.b.b.b	ENSGT00940000160221.c.d	ENSGT00940000165866.e	ENSGT00940000155631.j	ENSGT00390000005351.p.a	ENSGT00940000155781.q.b	ENSGT00950000183146.b.b.b	ENSGT01030000234648.a.a.c.a.e	ENSGT00390000001505.e	ENSGT00390000008429.e.a.d	ENSGT00940000159711.i
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	43	ENSCCRG00000035534	ENSCCRG00000022726	b3gnt7 (ENSCCRG00000079309)	ncl (ENSCCRG00000078126)	nppc (ENSCCRG00000001661)	ENSCCRG00000035138	alpi.2 (ENSCCRG00000070873)	ppp1r2 (ENSCCRG00000079721)	acap2b (ENSCCRG00000077846)	psmd1 (ENSCCRG00000069068)	htr2b (ENSCCRG00000035197)	ENSCCRG00000082803	ttc14 (ENSCCRG00000038514)	fxr1 (ENSCCRG00000042409) #20	dnajc19 (ENSCCRG00000079027) #21	sox2 (ENSCCRG00000081265) #22	ATP11B (ENSCCRG00000035657) #23	ENSCCRG00000018351 #26	ENSCCRG00000018348	ENSCCRG00000004905	ENSCCRG00000004912	ENSCCRG00000004924	ENSCCRG00000038655	ENSCCRG00000074091	ENSCCRG00000066861	ENSCCRG00000069473	ENSCCRG00000049772	ENSCCRG00000077903	ENSCCRG00000001443	ENSCCRG00000025078	klc4 (ENSCCRG00000009559)
Common carp reference	MODERN SPECIES	5	ENSCCRG00000018560	ENSCCRG00000028751	ENSCCRG00000028719	b3gnt7 (ENSCCRG00000022708)	ncl (ENSCCRG00000077246)	nppc (ENSCCRG00000063613)	ENSCCRG00000044114	alpi.2 (ENSCCRG00000028702)	ENSCCRG00000024903	ENSCCRG00000019151	psmd1 (ENSCCRG00000035208)	htr2b (ENSCCRG00000057644)	ENSCCRG00000064879	fxr1 (ENSCCRG00000042904) #20	dnajc19 (ENSCCRG00000042262) #21	sox2 (ENSCCRG00000054914) #22	ATP11B (ENSCCRG00000040362) #23	mccc1 (ENSCCRG00000040127) #25	ENSCCRG00000040078	ENSCCRG00000055191	ENSCCRG00000076673	ENSCCRG00000070613	ENSCCRG00000057997	ENSCCRG00000052939	ENSCCRG00000072056	ENSCCRG00000066410	ENSCCRG00000078543	ENSCCRG00000054158	ENSCCRG00000065730	ENSCCRG00000056296	ENSCCRG00000068958
Goldfish	MODERN SPECIES	14	ENSCARG00000012592	ENSCARG00000013306	polr2h (ENSCARG00000013316)	ARMC9 (ENSCARG00000013325)	b3gnt7 (ENSCARG00000013339)	ncl (ENSCARG00000013344)	nppc (ENSCARG00000013356)	alpi.1 (ENSCARG00000013358)	alpi.2 (ENSCARG00000013416)	ppp1r2 (ENSCARG00000013433)	acap2b (ENSCARG00000013487)	psmd1 (ENSCARG00000014038)	htr2b (ENSCARG00000014146)	fxr1 (ENSCARG00000014182) #20	dnajc19 (ENSCARG00000014749) #21	sox2 (ENSCARG00000014763) #22	ATP11B (ENSCARG00000014824) #23	mccc1 (ENSCARG00000016210) #25	ENSCARG00000016486 #26	ENSCARG00000016496	CARTPT (ENSCARG00000016507)	MAP1S (ENSCARG00000016516)	ENSCARG00000016529	ACY1 (ENSCARG00000016559)	ENSCARG00000016718	ENSCARG00000016734	ENSCARG00000016749	ENSCARG00000016767	ENSCARG00000016774	ENSCARG00000016777	ENSCARG00000016786
Characiphysae	ANCESTRAL SPECIES	28	ENSGT00390000018195	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00940000174617	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00390000018319.a.b.b.b.b	ENSGT00940000160221.c	ENSGT00940000165866	ENSGT00940000157395	ENSGT00390000006932	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b
Characiphysae_b	ANCESTRAL SPECIES	25	ENSGT00390000018195	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00940000174617	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT00950000182899.C.a #26	ENSGT00950000182930.B	ENSGT00390000018319.a.b.b.b.b	ENSGT00940000160221.c	ENSGT00940000165866	ENSGT00940000157395	ENSGT00390000006932	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b
Electric eel	MODERN SPECIES	157													ttc14 (ENSEEEG00000017262)	fxr1 (ENSEEEG00000013987) #20	dnajc19 (ENSEEEG00000013910) #21	sox2 (ENSEEEG00000013908) #22	ENSEEEG00000013906	ATP11B (ENSEEEG00000012527) #23	mccc1 (ENSEEEG00000011984) #25	ENSEEEG00000011960 #26	kng1 (ENSEEEG00000011957)	ENSEEEG00000011953	MAP1S (ENSEEEG00000011948)	ENSEEEG00000011946	mfsd14a1 (ENSEEEG00000011933)	sass6 (ENSEEEG00000011815)	lsm7 (ENSEEEG00000011778)	ENSEEEG00000011775	timm13 (ENSEEEG00000011773)	enc3 (ENSEEEG00000011772)	ENSEEEG00000011765
Characoidei	ANCESTRAL SPECIES	26	ENSGT00950000182983.B.a.a	ENSGT00390000014000	ENSGT00940000159993	ENSGT00510000047872	ENSGT00390000006932	ENSGT00940000157395	ENSGT00940000165866	ENSGT00390000004757	ENSGT00940000156389.a	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00940000174617	ENSGT00390000013701	ENSGT00950000183189.a.b.a #20	ENSGT00940000154384 #21	ENSGT00940000160614 #22	ENSGT00940000156162.C #23	ENSGT00940000156941 #25	ENSGT01000000216191	ENSGT00940000163473.i	ENSGT00390000015492.B	ENSGT00950000183063.c.b.b	ENSGT00950000183063.c.b.a	ENSGT00940000160221.c	ENSGT00940000157606	ENSGT00390000018026	ENSGT00390000018195	ENSGT00940000165367	ENSGT00940000158024.C	ENSGT00390000011314	ENSGT01100000263484.A.c.a.a.b
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	4	rapgef4b (ENSAMXG00000013128)	ENSAMXG00000013141	ENSAMXG00000044104	si:ch211-114n24.6 (ENSAMXG00000038191)	bin1b (ENSAMXG00000034502)	ihhb (ENSAMXG00000013154)	nhej1 (ENSAMXG00000013157)	atg3 (ENSAMXG00000013162)	ENSAMXG00000013169	ENSAMXG00000013174	ENSAMXG00000013177	CLDN10 (ENSAMXG00000030427)	ENSAMXG00000040236	cldn10a (ENSAMXG00000034562)	abcc4 (ENSAMXG00000013229)	sox21a (ENSAMXG00000025656) #22	GPR180 (ENSAMXG00000033211)	TGDS (ENSAMXG00000013312)	ENSAMXG00000013337	ENSAMXG00000035682	ENSAMXG00000039133	ENSAMXG00000031789	MTRF1 (ENSAMXG00000031859)	ENSAMXG00000013362	slain1b (ENSAMXG00000031965)	FBXL3 (ENSAMXG00000038418)	GPR34 (ENSAMXG00000033447)	caskb (ENSAMXG00000013382)	ENSAMXG00000013394	ddx3xb (ENSAMXG00000013396)	FUNDC1 (ENSAMXG00000002485)
Mexicana tetra	MODERN SPECIES	20	rsph3 (ENSAMXG00000037608)	timm13 (ENSAMXG00000040577)	ENSAMXG00000015716	lsm7 (ENSAMXG00000037622)	sass6 (ENSAMXG00000015631)	mfsd14a1 (ENSAMXG00000015606)	ENSAMXG00000015560	ppp1r2 (ENSAMXG00000033495)	acap2b (ENSAMXG00000001330)	htr2b (ENSAMXG00000001352)	psmd1 (ENSAMXG00000001344)	ENSAMXG00000040290	ttc14 (ENSAMXG00000001353)	fxr1 (ENSAMXG00000001357) #20	dnajc19 (ENSAMXG00000001366) #21	sox2 (ENSAMXG00000026046) #22	ATP11B (ENSAMXG00000001413) #23	mccc1 (ENSAMXG00000001531) #25	ENSAMXG00000041597 #26	ENSAMXG00000001614	ENSAMXG00000029044	ncl (ENSAMXG00000001647)	nppc (ENSAMXG00000038587)	alpi.1 (ENSAMXG00000001702)	alpi.2 (ENSAMXG00000042860)	ENSAMXG00000038103	b3gnt7 (ENSAMXG00000042723)	ARMC9 (ENSAMXG00000001779)	polr2h (ENSAMXG00000001800)	ENSAMXG00000001817	ENSAMXG00000001827
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	207	ENSPNAG00000011242	ENSPNAG00000001621	si:ch211-114n24.6 (ENSPNAG00000011229)	bin1b (ENSPNAG00000001606)	ihhb (ENSPNAG00000011152)	nhej1 (ENSPNAG00000001530)	atg3 (ENSPNAG00000011095)	ENSPNAG00000011081	ENSPNAG00000011069	ENSPNAG00000001504	dzip1 (ENSPNAG00000001495)	CLDN10 (ENSPNAG00000010976)	ENSPNAG00000010951	cldn10a (ENSPNAG00000010941)	abcc4 (ENSPNAG00000001466)	sox21a (ENSPNAG00000010802) #22	GPR180 (ENSPNAG00000010791)	TGDS (ENSPNAG00000010773)	ENSPNAG00000010758	TSC22D1 (ENSPNAG00000010743)	ENSPNAG00000010696	ENSPNAG00000010690	MTRF1 (ENSPNAG00000010682)	ENSPNAG00000010658	SLAIN1 (ENSPNAG00000010649)	ENSPNAG00000010637	ENSPNAG00000010617	kdm6al (ENSPNAG00000010594)	ENSPNAG00000010419	ENSPNAG00000010355	aamp (ENSPNAG00000010124)
Red-bellied piranha	MODERN SPECIES	464													ttc14 (ENSPNAG00000021293)	fxr1 (ENSPNAG00000021229) #20	ENSPNAG00000021146	sox2 (ENSPNAG00000021116) #22
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	3	dzip1 (ENSIPUG00000011056)	stx16 (ENSIPUG00000011032)	gnas (ENSIPUG00000010975)	TBB6 (ENSIPUG00000010950)	ENSIPUG00000010937	vapb (ENSIPUG00000010839)	rab22a (ENSIPUG00000010794)	NPEPL1 (ENSIPUG00000010766)	ctsz (ENSIPUG00000010751)	nelfcd (ENSIPUG00000010728)	AAMP (ENSIPUG00000010704)	fam210b (ENSIPUG00000010690)	FBXL3 (ENSIPUG00000010676)	caskb (ENSIPUG00000010623)	abcc4 (ENSIPUG00000010571)	ENSIPUG00000010555 #22	GPR180 (ENSIPUG00000010525)	TGDS (ENSIPUG00000010461)	SLC19A1 (ENSIPUG00000010418)	ENSIPUG00000010165	ddx3xb (ENSIPUG00000009936)	kdm6al (ENSIPUG00000005102)	prelid3b (ENSIPUG00000004788)	slc32a1 (ENSIPUG00000004778)	septin8a (ENSIPUG00000004772)	ENSIPUG00000004759	inha (ENSIPUG00000004751)	gjc4a.1 (ENSIPUG00000004675)	STK11IP (ENSIPUG00000004620)	igfbp2a (ENSIPUG00000004584)	IGFBP5 (ENSIPUG00000004559)
Channel catfish	MODERN SPECIES	1	timm13 (ENSIPUG00000024713)	enc3 (ENSIPUG00000024711)	arhgef18 (ENSIPUG00000024688)	insrb (ENSIPUG00000024674)	use1 (ENSIPUG00000024672)	myo9b (ENSIPUG00000024658)	s1pr4 (ENSIPUG00000024637)	ncln (ENSIPUG00000024632)	cers1 (ENSIPUG00000024624)	ENSIPUG00000024621	lamp3 (ENSIPUG00000024619) #26	mccc1 (ENSIPUG00000024615) #25	ATP11B (ENSIPUG00000024606) #23	fxr1 (ENSIPUG00000024597) #20	dnajc19 (ENSIPUG00000024593) #21	sox2 (ENSIPUG00000024592) #22	ttc14 (ENSIPUG00000024586)	htr2b (ENSIPUG00000024583)	psmd1 (ENSIPUG00000024562)	ncl (ENSIPUG00000024556)	ppp1r2 (ENSIPUG00000024467)	alpi.2 (ENSIPUG00000024465)	alpi.1 (ENSIPUG00000024463)	ENSIPUG00000024461	nppc (ENSIPUG00000024460)	acap2 (ENSIPUG00000024458)	b3gnt7 (ENSIPUG00000024457)	armc9 (ENSIPUG00000024344)	polr2h (ENSIPUG00000024331)	ENSIPUG00000024325	ENSIPUG00000024276
Elephant shark	MODERN SPECIES	1680	fgf12a (ENSCMIG00000013826)	ENSCMIG00000013828	ENSCMIG00000013829	GMNC (ENSCMIG00000013831)	ENSCMIG00000013833	ENSCMIG00000013836	eif2b5 (ENSCMIG00000013845)	ENSCMIG00000013887	DVL3 (ENSCMIG00000013891)	ap2m1 (ENSCMIG00000013908)	ENSCMIG00000013941	ENSCMIG00000013958	CCDC39 (ENSCMIG00000013975)	fxr1 (ENSCMIG00000013999) #20	dnajc19 (ENSCMIG00000014072) #21	sox2 (ENSCMIG00000014077) #22	ATP11B (ENSCMIG00000014084) ##23	dcun1d1 (ENSCMIG00000014124) #24	adprhl1 (ENSCMIG00000014127)	mccc1 (ENSCMIG00000014137) #25	ENSCMIG00000014153 #27
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000160614 #22
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	653															ENSEBUG00000004375	sox21a (ENSEBUG00000011647) #22	fis1 (ENSEBUG00000003870)	ENSEBUG00000000450
Hagfish	MODERN SPECIES	346														ENSEBUG00000014625	fis1 (ENSEBUG00000013544)	ENSEBUG00000005845 #22
Ciona	ANCESTRAL SPECIES	82																ENSGT00940000160614 #22	ENSGT00940000163239	ENSGT00390000003749	ENSGT00390000004600	ENSGT00940000159014.M	ENSGT00940000159014.K	ENSGT00940000159014.L
Ciona savignyi	MODERN SPECIES	2	ENSCSAVG00000008259	ENSCSAVG00000008369	ENSCSAVG00000008502	ENSCSAVG00000008506	ENSCSAVG00000008509	ENSCSAVG00000008524	ENSCSAVG00000008531	ENSCSAVG00000008536	ENSCSAVG00000008538	ENSCSAVG00000008540	ENSCSAVG00000008542	ENSCSAVG00000008545	ENSCSAVG00000008634	ENSCSAVG00000009024	ENSCSAVG00000009029	ENSCSAVG00000009067 #22	ENSCSAVG00000009071	ENSCSAVG00000009075	ENSCSAVG00000009078	ENSCSAVG00000009132	ENSCSAVG00000009214	ENSCSAVG00000009220	ENSCSAVG00000009223	ENSCSAVG00000009298	ENSCSAVG00000009301	ENSCSAVG00000009305	ENSCSAVG00000009308	ENSCSAVG00000009313	ENSCSAVG00000009319	ENSCSAVG00000009321	ENSCSAVG00000009337
Ciona intestinalis	DUPLICATION
Ciona intestinalis	MODERN SPECIES	408												ENSCING00000021556	ENSCING00000022937	ENSCING00000019689	ENSCING00000022697	soxB2 (ENSCING00000019315) #22	ENSCING00000018019	ENSCING00000018326	ENSCING00000020611	ENSCING00000021410	ENSCING00000020077	ENSCING00000023209	ENSCING00000022640	ENSCING00000019660	ENSCING00000019964	ENSCING00000019682	ENSCING00000019391	ENSCING00000022865	ENSCING00000000312	ENSCING00000000308	ENSCING00000021961
Ciona intestinalis	MODERN SPECIES		ENSCING00000004761	ENSCING00000013804	ENSCING00000015736	ENSCING00000004763	ENSCING00000004764	ENSCING00000023788	ENSCING00000015339	ENSCING00000013802	ENSCING00000005999	ENSCING00000018393	ENSCING00000020769	ENSCING00000006011	ENSCING00000024053	ENSCING00000006008	ENSCING00000013805	ENSCING00000006005 #22	ENSCING00000006002	ENSCING00000024357	ENSCING00000023114	ENSCING00000006013	ENSCING00000022185	ENSCING00000019527	ENSCING00000020849	ENSCING00000013807	ENSCING00000006055	ENSCING00000006064	ENSCING00000006065	ENSCING00000018427	ENSCING00000006068	ENSCING00000023384	ENSCING00000023109