Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000162975 #9	ENSGT00940000155779.a.b #10	ENSGT00940000162382 #11	ENSGT00920000149187	ENSGT00940000160798 #12	ENSGT00940000155565 #14	ENSGT00940000158338	ENSGT01030000235045 #15	ENSGT00940000155739	ENSGT00390000018295 #16	ENSGT00390000006425 #17	ENSGT00940000158255 #18	ENSGT00630000089917 #19	ENSGT00940000158605.fb #20	ENSGT00940000162934 #21	ENSGT00940000162418 #22	ENSGT00940000159459 #23	ENSGT00940000160576 #24	ENSGT00950000182944.D #25	ENSGT00940000161215 #27	ENSGT00860000136229	ENSGT00390000006516	ENSGT00940000162096 #28	ENSGT00390000016597.j #29	ENSGT00940000157775 #30	ENSGT00390000011517.a.b #31	ENSGT00500000045192 #32	ENSGT00550000074977 #33	ENSGT00940000154708 #34	ENSGT00940000160769 #35	ENSGT00390000017793 #36
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162975 #9	ENSGT00940000155779.a.b #10	ENSGT00940000162382 #11	ENSGT00920000149187	ENSGT00940000160798 #12	ENSGT00940000155565 #14	ENSGT00940000158338	ENSGT01030000235045 #15	ENSGT00940000155739	ENSGT00390000018295 #16	ENSGT00390000006425 #17	ENSGT00940000158255 #18	ENSGT00630000089917 #19	ENSGT00940000158605.fb #20	ENSGT00940000162934 #21	ENSGT00940000162418 #22	ENSGT00940000159459 #23	ENSGT00940000160576 #24	ENSGT00950000182944.D #25	ENSGT00940000161215.s #27	ENSGT00390000006516	ENSGT00940000161215.t ##27	ENSGT00940000162096 #28	ENSGT00390000016597.j #29	ENSGT00940000157775 #30	ENSGT00390000011517.a.b #31	ENSGT00500000045192 #32	ENSGT00550000074977 #33	ENSGT00940000154708 #34	ENSGT00940000160769 #35	ENSGT00390000017793 #36
Hystricomorpha_a	ANCESTRAL SPECIES	42	ENSGT00940000162975 #9	ENSGT00940000155779.a.b #10	ENSGT00940000162382 #11	ENSGT00920000149187	ENSGT00940000160798 #12	ENSGT00940000155565 #14	ENSGT00940000158338	ENSGT01030000235045 #15	ENSGT00940000155739	ENSGT00390000018295 #16	ENSGT00390000006425 #17	ENSGT00940000158255 #18	ENSGT00630000089917 #19	ENSGT00940000158605.fb #20	ENSGT00940000162934 #21	ENSGT00940000162418 #22	ENSGT00940000159459 #23	ENSGT00940000160576 #24	ENSGT00950000182944.D #25	ENSGT00940000161215.s #27	ENSGT00940000162096 #28	ENSGT00390000016597.j #29	ENSGT00940000157775 #30	ENSGT00390000011517.a.b #31	ENSGT00500000045192 #32	ENSGT00550000074977 #33	ENSGT00940000154708 #34	ENSGT00940000160769 #35	ENSGT00390000017793 #36	ENSGT00390000000752 #37	ENSGT00390000015960.a.b.b
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00940000162975 #9	ENSGT00940000155779.a.b #10	ENSGT00940000162382 #11	ENSGT00920000149187	ENSGT00940000160798 #12	ENSGT00940000158338	ENSGT00940000155565 #14	ENSGT01030000235045 #15	ENSGT00940000155739	ENSGT00390000018295 #16	ENSGT00390000006425 #17	ENSGT00940000158255 #18	ENSGT00630000089917 #19	ENSGT00940000158605.fb #20	ENSGT00940000162934 #21	ENSGT00940000162418 #22	ENSGT00940000159459 #23	ENSGT00940000160576 #24	ENSGT00950000182944.D #25	ENSGT00940000161215.s #27	ENSGT00940000162096 #28	ENSGT00390000016597.j #29	ENSGT00940000157775 #30	ENSGT00390000011517.a.b #31	ENSGT00500000045192 #32	ENSGT00550000074977 #33	ENSGT00940000154708 #34	ENSGT00940000160769 #35	ENSGT00390000017793 #36	ENSGT00390000000752 #37	ENSGT00390000015960.a.b.b
Degu	MODERN SPECIES	46	ENSODEG00000017614 #7	AGPAT1 (ENSODEG00000017444) #8	EGFL8 (ENSODEG00000017557) #9	PPT2 (ENSODEG00000017440) #10	ENSODEG00000017443 #11	ATF6B (ENSODEG00000017478) #12	ENSODEG00000020459 #13	ENSODEG00000017498 #14	ENSODEG00000017692 #15	STK19 (ENSODEG00000017509) #16	DXO (ENSODEG00000017552) #17	SKIC2 (ENSODEG00000017516) #18	NELFE (ENSODEG00000017670) #19	CFB (ENSODEG00000017537) #20	C2 (ENSODEG00000017792) #21	ZBTB12 (ENSODEG00000017709) #22	EHMT2 (ENSODEG00000017547) #23	SLC44A4 (ENSODEG00000017567) #24	NEU1 (ENSODEG00000017719) #25	ENSODEG00000020560 #26	ENSODEG00000020564 #27	HSPA1L (ENSODEG00000020501) #28	LSM2 (ENSODEG00000017583) #29	VARS1 (ENSODEG00000017681) #30	ENSODEG00000017700 #31	SAPCD1 (ENSODEG00000017689) #32	MSH5 (ENSODEG00000017644) #33	ENSODEG00000017682 #34	DDAH2 (ENSODEG00000017617) #35	MPIG6B (ENSODEG00000017842) #36	LY6G6C (ENSODEG00000017694) #37
Long-tailed chinchilla	MODERN SPECIES	144	EGFL8 (ENSCLAG00000007204) #9	PPT2 (ENSCLAG00000009963) #10	ENSCLAG00000007564 #11	FKBPL (ENSCLAG00000008369)	ATF6B (ENSCLAG00000007441) #12	CYP21A2 (ENSCLAG00000007939)	ENSCLAG00000008330 #14	ENSCLAG00000007618 #15	ENSCLAG00000008416	STK19 (ENSCLAG00000007097) #16	DXO (ENSCLAG00000006682) #17	SKIC2 (ENSCLAG00000007678) #18	NELFE (ENSCLAG00000009684) #19	CFB (ENSCLAG00000010397) #20	C2 (ENSCLAG00000007167) #21	ZBTB12 (ENSCLAG00000007108) #22	EHMT2 (ENSCLAG00000009673) #23	SLC44A4 (ENSCLAG00000006728) #24	NEU1 (ENSCLAG00000008497) #25	ENSCLAG00000018000 #27	HSPA1L (ENSCLAG00000007254) #28	LSM2 (ENSCLAG00000008081) #29	VARS1 (ENSCLAG00000009470) #30	VWA7 (ENSCLAG00000007284) #31	SAPCD1 (ENSCLAG00000006758) #32	MSH5 (ENSCLAG00000011345) #33	CLIC1 (ENSCLAG00000008227) #34	MPIG6B (ENSCLAG00000007245) #36	DDAH2 (ENSCLAG00000006559) #35	LY6G6C (ENSCLAG00000009864) #37	ENSCLAG00000009432
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00390000008726.h.b #8	ENSGT00940000162975 #9	ENSGT00940000155779.a.b #10	ENSGT00940000162382 #11	ENSGT00920000149187	ENSGT00940000160798 #12	ENSGT00940000155565 #14	ENSGT00940000158338	ENSGT00940000155739	ENSGT00390000018295 #16	ENSGT00390000006425 #17	ENSGT00940000158255 #18	ENSGT00630000089917 #19	ENSGT00940000158605.fb #20	ENSGT00940000162934 #21	ENSGT00940000162418 #22	ENSGT00940000159459 #23	ENSGT00940000160576 #24	ENSGT00950000182944.D #25	ENSGT00940000161215 #27	ENSGT00860000136229	ENSGT00940000162096 #28	ENSGT00390000016597.i.b ##29	ENSGT00940000157775 #30	ENSGT00390000011517.a.b #31	ENSGT00500000045192 #32	ENSGT00550000074977 #33	ENSGT00940000154708 #34	ENSGT00940000160769 #35	ENSGT00390000017793 #36	ENSGT00390000000752 #37
Marmotini	ANCESTRAL SPECIES	18	ENSGT00390000008726.h.b #8	ENSGT00940000162975 #9	ENSGT00940000155779.a.b #10	ENSGT00940000162382 #11	ENSGT00920000149187	ENSGT00940000160798 #12	ENSGT00940000155565 #14	ENSGT00940000158338	ENSGT00940000155739	ENSGT00390000018295 #16	ENSGT00390000006425 #17	ENSGT00940000158255 #18	ENSGT00630000089917 #19	ENSGT00940000158605.fb #20	ENSGT00940000162934 #21	ENSGT00940000162418 #22	ENSGT00940000159459 #23	ENSGT00940000160576 #24	ENSGT00950000182944.D #25	ENSGT00940000161215 #27	ENSGT00860000136229	ENSGT00940000162096 #28	ENSGT00390000016597.i.b ##29	ENSGT00940000157775 #30	ENSGT00390000011517.a.b #31	ENSGT00500000045192 #32	ENSGT00550000074977 #33	ENSGT00940000154708 #34	ENSGT00940000160769 #35	ENSGT00390000017793 #36	ENSGT00390000000752 #37
Marmotini_b	ANCESTRAL SPECIES	82	ENSGT00390000008726.h.b #8	ENSGT00940000162975 #9	ENSGT00940000155779.a.b #10	ENSGT00940000162382 #11	ENSGT00920000149187	ENSGT00940000160798 #12	ENSGT00940000155565 #14	ENSGT00940000158338	ENSGT00940000155739	ENSGT00390000018295 #16	ENSGT00390000006425 #17	ENSGT00940000158255 #18	ENSGT00630000089917 #19	ENSGT00940000158605.fb #20	ENSGT00940000162934 #21	ENSGT00940000162418 #22	ENSGT00940000159459 #23	ENSGT00940000160576 #24	ENSGT00950000182944.D #25	ENSGT00940000161215 #27	ENSGT00860000136229	ENSGT00940000162096 #28	ENSGT00390000016597.i.b ##29	ENSGT00940000157775 #30	ENSGT00390000011517.a.b #31	ENSGT00500000045192 #32	ENSGT00550000074977 #33	ENSGT00940000154708 #34	ENSGT00940000160769 #35	ENSGT00390000017793 #36	ENSGT00390000000752 #37
Arctic ground squirrel	MODERN SPECIES	662	EGFL8 (ENSUPAG00010019691) #9	PPT2 (ENSUPAG00010019699) #10	PRRT1 (ENSUPAG00010019711) #11	FKBPL (ENSUPAG00010019716)	ATF6B (ENSUPAG00010019718) #12	ENSUPAG00010019727 #14	ENSUPAG00010019731 #14	CYP21A2 (ENSUPAG00010019746)	ENSUPAG00010019979	STK19 (ENSUPAG00010019994) #16	DXO (ENSUPAG00010019997) #17	SKIC2 (ENSUPAG00010020008) #18	NELFE (ENSUPAG00010020030) #19	CFB (ENSUPAG00010020047) #20	C2 (ENSUPAG00010020070) #21	ZBTB12 (ENSUPAG00010020115) #22	EHMT2 (ENSUPAG00010020118) #23	NEU1 (ENSUPAG00010020203) #25	ENSUPAG00010020208 #27	ENSUPAG00010020209	HSPA1L (ENSUPAG00010020211) #28	ENSUPAG00010020214 ##29	VARS1 (ENSUPAG00010020220) #30	VWA7 (ENSUPAG00010020234) #31	SAPCD1 (ENSUPAG00010020268) #32	MSH5 (ENSUPAG00010020275) #33	CLIC1 (ENSUPAG00010020314) #34	DDAH2 (ENSUPAG00010020318) #35	MPIG6B (ENSUPAG00010020337) #36	LY6G6C (ENSUPAG00010020345) #37	LY6G6D (ENSUPAG00010020352)
Squirrel	MODERN SPECIES	327	AGPAT1 (ENSSTOG00000008401) #8	EGFL8 (ENSSTOG00000029022) #9	PPT2 (ENSSTOG00000014721) #10	PRRT1 (ENSSTOG00000026158) #11	FKBPL (ENSSTOG00000014716)	ATF6B (ENSSTOG00000027684) #12	TNXB (ENSSTOG00000024569) #14	CYP21A2 (ENSSTOG00000014662)	ENSSTOG00000014639	STK19 (ENSSTOG00000014629) #16	DXO (ENSSTOG00000027075) #17	SKIC2 (ENSSTOG00000014596) #18	NELFE (ENSSTOG00000027409) #19	CFB (ENSSTOG00000014577) #20	C2 (ENSSTOG00000029554) #21	ZBTB12 (ENSSTOG00000027411) #22	EHMT2 (ENSSTOG00000020917) #23	SLC44A4 (ENSSTOG00000020040) #24	NEU1 (ENSSTOG00000013187) #25	ENSSTOG00000029617 #27	ENSSTOG00000033750 #27	HSPA1L (ENSSTOG00000029893) #28	LSM2 (ENSSTOG00000013144) ##29	VARS1 (ENSSTOG00000013112) #30	VWA7 (ENSSTOG00000013089) #31	SAPCD1 (ENSSTOG00000020002) #32	MSH5 (ENSSTOG00000013079) #33	CLIC1 (ENSSTOG00000027220) #34	DDAH2 (ENSSTOG00000020601) #35	MPIG6B (ENSSTOG00000013076) #36	LY6G6C (ENSSTOG00000013066) #37
Alpin marmot	MODERN SPECIES	20	AGPAT1 (ENSMMMG00000017992) #8	EGFL8 (ENSMMMG00000017988) #9	PPT2 (ENSMMMG00000017980) #10	PRRT1 (ENSMMMG00000017975) #11	FKBPL (ENSMMMG00000017964)	ATF6B (ENSMMMG00000017915) #12	TNXB (ENSMMMG00000017623) #14	CYP21A2 (ENSMMMG00000017250)	ENSMMMG00000017231	STK19 (ENSMMMG00000017217) #16	DXO (ENSMMMG00000017202) #17	SKIC2 (ENSMMMG00000017173) #18	NELFE (ENSMMMG00000017122) #19	CFB (ENSMMMG00000017099) #20	C2 (ENSMMMG00000017046) #21	ZBTB12 (ENSMMMG00000017035) #22	EHMT2 (ENSMMMG00000010523) #23	SLC44A4 (ENSMMMG00000010455) #24	NEU1 (ENSMMMG00000010432) #25	ENSMMMG00000010423 #27	HSPA1L (ENSMMMG00000010419) #28	LSM2 (ENSMMMG00000010414) ##29	VARS1 (ENSMMMG00000010374) #30	VWA7 (ENSMMMG00000010320) #31	SAPCD1 (ENSMMMG00000010310) #32	MSH5 (ENSMMMG00000010239) #33	CLIC1 (ENSMMMG00000010225) #34	DDAH2 (ENSMMMG00000010203) #35	MPIG6B (ENSMMMG00000010181) #36	LY6G6C (ENSMMMG00000010168) #37	LY6G6D (ENSMMMG00000010160)
Eurasian red squirrel	MODERN SPECIES	16	AGER (ENSSVLG00005009044)	RNF5 (ENSSVLG00005009405) #7	AGPAT1 (ENSSVLG00005009434) #8	ENSSVLG00005009478 #9	PRRT1 (ENSSVLG00005009624) #11	FKBPL (ENSSVLG00005009660)	ATF6B (ENSSVLG00005009694) #12	ENSSVLG00005009930 #14	ENSSVLG00005010039 #14	CYP21A2 (ENSSVLG00005010144)	ENSSVLG00005010830	STK19 (ENSSVLG00005013398) #16	DXO (ENSSVLG00005013565) #17	SKIC2 (ENSSVLG00005013769) #18	NELFE (ENSSVLG00005013975) #19	ZBTB12 (ENSSVLG00005015684) #22	EHMT2 (ENSSVLG00005015794) #23	SLC44A4 (ENSSVLG00005016167) #24	NEU1 (ENSSVLG00005016819) #25	ENSSVLG00005016858 #27	HSPA1L (ENSSVLG00005016879) #28	ENSSVLG00005016911 ##29	VARS1 (ENSSVLG00005016986) #30	VWA7 (ENSSVLG00005017120) #31	SAPCD1 (ENSSVLG00005017335) #32	MSH5 (ENSSVLG00005017475) #33	CLIC1 (ENSSVLG00005018219) #34	DDAH2 (ENSSVLG00005018334) #35	MPIG6B (ENSSVLG00005018418) #36	LY6G6C (ENSSVLG00005018810) #37	LY6G6D (ENSSVLG00005018868)