Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00390000015123.a	ENSGT00940000155110	ENSGT00390000001986	ENSGT00940000161100	ENSGT00390000002748	ENSGT00390000016319	ENSGT00950000183152.B.c.b	ENSGT00390000005702	ENSGT00940000161496	ENSGT00940000162716	ENSGT00940000160881	ENSGT00940000156204	ENSGT00940000162407 #19	ENSGT00930000151055 #20	ENSGT00390000012508 #21	ENSGT00940000160297 #22	ENSGT00390000013276 #23	ENSGT00940000160272 #24	ENSGT00440000039148 #25	ENSGT00570000079107	ENSGT00390000009097 #26	ENSGT00990000203527.a.a.a.a.m #27	ENSGT00990000203527.a.a.a.a.n ##27	ENSGT00990000203527.a.a.a.b ##27	ENSGT00990000203619.A.b.a #28	ENSGT01010000222294 #30	ENSGT01100000263535.a.b #31	ENSGT00390000003154 #32	ENSGT00940000160704.b #33	ENSGT00950000183058.B #34	ENSGT00530000063991.b #35
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00950000183051.b.a	ENSGT00490000043434	ENSGT00530000063023.A.a #7	ENSGT00390000011085.nb #8	ENSGT00940000157021 #9	ENSGT00940000153725.a.b.a #10	ENSGT00420000029858 #11	ENSGT00420000029847 #12	ENSGT00940000156370 #13	ENSGT00390000018876 #16	ENSGT00390000009456 #17	ENSGT00940000153837.a.b #18	ENSGT00940000162407 #19	ENSGT00930000151055 #20	ENSGT00390000012508 #21	ENSGT00940000160297 #22	ENSGT00390000013276 #23	ENSGT00940000160272 #24	ENSGT00440000039148 #25	ENSGT00570000079107	ENSGT00390000009097 #26	ENSGT00990000203527.a.a.a.a.m #27	ENSGT00990000203527.a.a.a.b ##27	ENSGT00990000203619.A.b.a #28	ENSGT01010000222294 #30	ENSGT01100000263535.a.b #31	ENSGT00390000003154 #32	ENSGT00940000160704.b #33	ENSGT00950000183058.B #34	ENSGT00530000063991.b #35	ENSGT00990000203831 #36
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00950000183051.b.a	ENSGT00490000043434	ENSGT00530000063023.A.a #7	ENSGT00390000011085.nb #8	ENSGT00940000157021 #9	ENSGT00940000153725.a.b.a #10	ENSGT00420000029858 #11	ENSGT00420000029847 #12	ENSGT00940000156370 #13	ENSGT00390000018876 #16	ENSGT00390000009456 #17	ENSGT00940000153837.a.b #18	ENSGT00940000162407 #19	ENSGT00930000151055 #20	ENSGT00390000012508 #21	ENSGT00940000160297 #22	ENSGT00390000013276 #23	ENSGT00940000160272 #24	ENSGT00440000039148 #25	ENSGT00570000079107	ENSGT00390000009097 #26	ENSGT00990000203527.a.a.a.a.m #27	ENSGT00990000203527.a.a.a.b ##27	ENSGT00990000203619.A.b.a #28	ENSGT01010000222294 #30	ENSGT01100000263535.a.b #31	ENSGT00390000003154 #32	ENSGT00940000160704.b #33	ENSGT00950000183058.B #34	ENSGT00530000063991.b #35	ENSGT00990000203831 #36
Guinea pig	MODERN SPECIES	56	DPY19L3 (ENSCPOG00000012483) #7	PDCD5 (ENSCPOG00000040356) #8	ANKRD27 (ENSCPOG00000000160) #9	RGS9BP (ENSCPOG00000000730) #10	NUDT19 (ENSCPOG00000038218) #11	TDRD12 (ENSCPOG00000002876) #12	ENSCPOG00000034999 #13	ENSCPOG00000030866 #14	ENSCPOG00000011225 #15	CEP89 (ENSCPOG00000001470) #16	FAAP24 (ENSCPOG00000011965) #17	RHPN2 (ENSCPOG00000011968) #18	ENSCPOG00000013209 #19	RBM42 (ENSCPOG00000012365) #20	HAUS5 (ENSCPOG00000002950) #21	ATP4A (ENSCPOG00000005328) #22	TMEM147 (ENSCPOG00000032771) #23	GAPDHS (ENSCPOG00000010687) #24	SBSN (ENSCPOG00000030769) #25	KRTDAP (ENSCPOG00000010684) #26	FFAR2 (ENSCPOG00000033507) #27	ENSCPOG00000036207 #28	ENSCPOG00000037551 #29	CD22 (ENSCPOG00000012154) #30	MAG (ENSCPOG00000012151) #31	HAMP (ENSCPOG00000036468) #32	USF2 (ENSCPOG00000012147) #33	LSR (ENSCPOG00000012142) #34	ENSCPOG00000023557 #35	ENSCPOG00000004063 #36	FXYD7 (ENSCPOG00000036482) #37
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00950000183051.b.a	ENSGT00490000043434	ENSGT00530000063023.A.a #7	ENSGT00390000011085.nb #8	ENSGT00940000157021 #9	ENSGT00940000153725.a.b.a #10	ENSGT00420000029858 #11	ENSGT00420000029847 #12	ENSGT00940000156370 #13	ENSGT00390000018876 #16	ENSGT00390000009456 #17	ENSGT00940000153837.a.b #18	ENSGT00940000162407 #19	ENSGT00930000151055 #20	ENSGT00390000012508 #21	ENSGT00940000160297 #22	ENSGT00390000013276 #23	ENSGT00940000160272 #24	ENSGT00440000039148 #25	ENSGT00570000079107	ENSGT00390000009097 #26	ENSGT00990000203527.a.a.a.a.m #27	ENSGT00990000203527.a.a.a.b ##27	ENSGT00990000203619.A.b.a #28	ENSGT01010000222294 #30	ENSGT01100000263535.a.b #31	ENSGT00390000003154 #32	ENSGT00940000160704.b #33	ENSGT00950000183058.B #34	ENSGT00530000063991.b #35	ENSGT00940000153062.A.b.a #37
Long-tailed chinchilla	MODERN SPECIES	175	TSHZ3 (ENSCLAG00000012902)	ZNF507 (ENSCLAG00000012690)	DPY19L3 (ENSCLAG00000013128) #7	ENSCLAG00000014452 ##8	ENSCLAG00000013353 #9	RGS9BP (ENSCLAG00000017932) #10	NUDT19 (ENSCLAG00000015394) #11	TDRD12 (ENSCLAG00000012138) #12	SLC7A9 (ENSCLAG00000012671) #13	ENSCLAG00000012488 #16	FAAP24 (ENSCLAG00000013484) #17	RHPN2 (ENSCLAG00000011890) #18	ETV2 (ENSCLAG00000011446) #19	RBM42 (ENSCLAG00000012865) #20	HAUS5 (ENSCLAG00000011624) #21	ATP4A (ENSCLAG00000013870) #22	TMEM147 (ENSCLAG00000017174) #23	GAPDHS (ENSCLAG00000013274) #24	ENSCLAG00000012824 #25	ENSCLAG00000016791	KRTDAP (ENSCLAG00000012497) #26	FFAR2 (ENSCLAG00000011955) #27	ENSCLAG00000015194	ENSCLAG00000014285 ##27	FFAR1 (ENSCLAG00000017824) #28	CD22 (ENSCLAG00000012767) #30	MAG (ENSCLAG00000014614) #31	HAMP (ENSCLAG00000014780) #32	USF2 (ENSCLAG00000012758) #33	LSR (ENSCLAG00000012215) #34	ENSCLAG00000012273 #35
Degu	MODERN SPECIES	124	ENSODEG00000013248 #8	ANKRD27 (ENSODEG00000013621) #9	RGS9BP (ENSODEG00000020326) #10	NUDT19 (ENSODEG00000014770) #11	TDRD12 (ENSODEG00000014443) #12	ENSODEG00000014355 #13	ENSODEG00000015062 #13	CEP89 (ENSODEG00000014225) #16	FAAP24 (ENSODEG00000013890) #17	RHPN2 (ENSODEG00000014557) #18	ENSODEG00000020158	ENSODEG00000014537 #19	RBM42 (ENSODEG00000013705) #20	ENSODEG00000020382	HAUS5 (ENSODEG00000015029) #21	ATP4A (ENSODEG00000014297) #22	TMEM147 (ENSODEG00000014601) #23	GAPDHS (ENSODEG00000013909) #24	ENSODEG00000014823 #25	ENSODEG00000014042	FFAR2 (ENSODEG00000020307) #27	ENSODEG00000020312 ##27	FFAR1 (ENSODEG00000020315) #28	CD22 (ENSODEG00000014197) #30	MAG (ENSODEG00000014122) #31	HAMP (ENSODEG00000015547) #32	USF2 (ENSODEG00000014500) #33	LSR (ENSODEG00000014322) #34	ENSODEG00000014231 #36	ENSODEG00000015329	FXYD1 (ENSODEG00000014043) ##37
Naked mole-rat female	MODERN SPECIES	20	ZNF507 (ENSHGLG00000014642)	DPY19L3 (ENSHGLG00000008160) #7	PDCD5 (ENSHGLG00000015879) #8	ENSHGLG00000000739 #9	RGS9BP (ENSHGLG00000043502) #10	ENSHGLG00000033957	ENSHGLG00000032764	ENSHGLG00000049663	TDRD12 (ENSHGLG00000015608) #12	CEP89 (ENSHGLG00000015749) #16	FAAP24 (ENSHGLG00000047787) #17	ENSHGLG00000005491 #18	ENSHGLG00000006342 #19	RBM42 (ENSHGLG00000008418) #20	HAUS5 (ENSHGLG00000015256) #21	ATP4A (ENSHGLG00000014936) #22	TMEM147 (ENSHGLG00000018035) #23	GAPDHS (ENSHGLG00000015071) #24	SBSN (ENSHGLG00000015078) #25	ENSHGLG00000014982	KRTDAP (ENSHGLG00000033622) #26	FFAR2 (ENSHGLG00000006807) #27	FFAR1 (ENSHGLG00000021270) #28	CD22 (ENSHGLG00000011680) #30	MAG (ENSHGLG00000006740) #31	ENSHGLG00000008083	USF2 (ENSHGLG00000011485) #33	ENSHGLG00000045924 #35	FAM187B (ENSHGLG00000034675) #35	LSR (ENSHGLG00000006626) #34	ENSHGLG00000040719 #36
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00390000001986	ENSGT00940000161100	ENSGT00390000002748	ENSGT00390000016319	ENSGT00950000183152.B.c.b	ENSGT00390000005702	ENSGT00940000161496	ENSGT00940000162716	ENSGT00940000160881	ENSGT00940000156204	ENSGT00940000162407 #19	ENSGT00930000151055 #20	ENSGT00390000012508 #21	ENSGT00950000183147.A.b.b	ENSGT00390000016486	ENSGT00940000160297 #22	ENSGT00390000013276 #23	ENSGT00940000160272 #24	ENSGT00440000039148.j #25	ENSGT00570000079107	ENSGT00390000009097 #26	ENSGT00990000203527.a.a.a.a.m #27	ENSGT00990000203527.a.a.a.a.n ##27	ENSGT00990000203527.a.a.a.b ##27	ENSGT00990000203619.A.b.a #28	ENSGT01010000222294 #30	ENSGT01100000263535.a.b #31	ENSGT00390000003154 #32	ENSGT00940000160704.b #33	ENSGT00950000183058.B #34	ENSGT00530000063991.b #35
Marmotini	ANCESTRAL SPECIES	7	ENSGT00940000155110.c	ENSGT00390000001986	ENSGT00940000161100	ENSGT00390000002748	ENSGT00390000016319	ENSGT00950000183152.B.c.b	ENSGT00390000005702	ENSGT00940000161496	ENSGT00940000162716	ENSGT00940000160881	ENSGT00940000156204.l	ENSGT00940000162407 #19	ENSGT00930000151055 #20	ENSGT00390000012508 #21	ENSGT00390000016486	ENSGT00940000160297 #22	ENSGT00390000013276 #23	ENSGT00940000160272 #24	ENSGT00440000039148.j #25	ENSGT00570000079107	ENSGT00390000009097 #26	ENSGT00990000203527.a.a.a.a.m #27	ENSGT00990000203527.a.a.a.a.n ##27	ENSGT00990000203527.a.a.a.b ##27	ENSGT00990000203619.A.b.a #28	ENSGT01010000222294 #30	ENSGT01100000263535.a.b #31	ENSGT00390000003154 #32	ENSGT00940000160704.b #33	ENSGT00950000183058.B #34	ENSGT00530000063991.b #35
Marmotini_b	ANCESTRAL SPECIES	50	ENSGT00940000155110.c	ENSGT00390000001986	ENSGT00940000161100	ENSGT00390000002748	ENSGT00390000016319	ENSGT00950000183152.B.c.b	ENSGT00390000005702	ENSGT00940000161496	ENSGT00940000162716	ENSGT00940000160881	ENSGT00940000156204.l	ENSGT00940000162407 #19	ENSGT00930000151055 #20	ENSGT00390000012508 #21	ENSGT00390000016486	ENSGT00940000160297 #22	ENSGT00390000013276 #23	ENSGT00940000160272 #24	ENSGT00440000039148.j #25	ENSGT00570000079107	ENSGT00390000009097 #26	ENSGT00990000203527.a.a.a.a.m #27	ENSGT00990000203527.a.a.a.a.n ##27	ENSGT00990000203527.a.a.a.b ##27	ENSGT00990000203619.A.b.a #28	ENSGT01010000222294 #30	ENSGT01100000263535.a.b #31	ENSGT00390000003154 #32	ENSGT00940000160704.b #33	ENSGT00950000183058.B #34	ENSGT00530000063991.b #35
Arctic ground squirrel	MODERN SPECIES	86													ENSUPAG00010011553	ENSUPAG00010011550	ENSUPAG00010011542	ATP4A (ENSUPAG00010011498) #22	TMEM147 (ENSUPAG00010011488) #23	GAPDHS (ENSUPAG00010011434) #24	ENSUPAG00010011431 #25	ENSUPAG00010011418 #25	ENSUPAG00010011405	ENSUPAG00010011397	KRTDAP (ENSUPAG00010011363) #26	FFAR2 (ENSUPAG00010011361) #27	ENSUPAG00010011359 ##27	ENSUPAG00010011355 ##27	FFAR1 (ENSUPAG00010011354) #28	CD22 (ENSUPAG00010011104) #30	MAG (ENSUPAG00010011084) #31	HAMP (ENSUPAG00010011082) #32	USF2 (ENSUPAG00010010979) #33
Squirrel	MODERN SPECIES	170	PRODH2 (ENSSTOG00000020884)	ARHGAP33 (ENSSTOG00000004685)	PROSER3 (ENSSTOG00000029163)	HSPB6 (ENSSTOG00000009121)	LIN37 (ENSSTOG00000019560)	PSENEN (ENSSTOG00000024185)	U2AF1L4 (ENSSTOG00000000884)	ENSSTOG00000000881	KMT2B (ENSSTOG00000027453)	ENSSTOG00000021374	UPK1A (ENSSTOG00000024409)	COX6B1 (ENSSTOG00000030918)	ENSSTOG00000013057 #19	RBM42 (ENSSTOG00000013050) #20	HAUS5 (ENSSTOG00000013031) #21	ATP4A (ENSSTOG00000007393) #22	TMEM147 (ENSSTOG00000007378) #23	GAPDHS (ENSSTOG00000007355) #24	ENSSTOG00000027294 #25	DMKN (ENSSTOG00000007332)	KRTDAP (ENSSTOG00000007319) #26	FFAR2 (ENSSTOG00000007297) #27	ENSSTOG00000026304 ##27	ENSSTOG00000006843 ##27	CD22 (ENSSTOG00000009964) #30	ENSSTOG00000009953	HAMP (ENSSTOG00000031167) #32	USF2 (ENSSTOG00000022219) #33	LSR (ENSSTOG00000004494) #34	FAM187B (ENSSTOG00000027316) #35	FXYD1 (ENSSTOG00000029452) ##37
Alpin marmot	MODERN SPECIES	45	PROSER3 (ENSMMMG00000005355)	HSPB6 (ENSMMMG00000005416)	LIN37 (ENSMMMG00000005423)	PSENEN (ENSMMMG00000005456)	ENSMMMG00000005467	IGFLR1 (ENSMMMG00000005530)	KMT2B (ENSMMMG00000005534)	ZBTB32 (ENSMMMG00000005625)	UPK1A (ENSMMMG00000005648)	COX6B1 (ENSMMMG00000005664)	ETV2 (ENSMMMG00000005681) #19	RBM42 (ENSMMMG00000005697) #20	HAUS5 (ENSMMMG00000005728) #21	ENSMMMG00000005741	ENSMMMG00000005752	ATP4A (ENSMMMG00000005756) #22	TMEM147 (ENSMMMG00000005820) #23	GAPDHS (ENSMMMG00000005854) #24	ENSMMMG00000005884 #25	ENSMMMG00000005904	KRTDAP (ENSMMMG00000005909) #26	FFAR2 (ENSMMMG00000005959) #27	ENSMMMG00000005965 ##27	ENSMMMG00000005988 ##27	FFAR1 (ENSMMMG00000006000) #28	CD22 (ENSMMMG00000006006) #30	MAG (ENSMMMG00000006122) #31	HAMP (ENSMMMG00000006164) #32	USF2 (ENSMMMG00000006171) #33	LSR (ENSMMMG00000006178) #34	FAM187B (ENSMMMG00000006192) #35
Eurasian red squirrel	MODERN SPECIES	8	HSPB6 (ENSSVLG00005010780)	LIN37 (ENSSVLG00005010739)	PSENEN (ENSSVLG00005010696)	U2AF1L4 (ENSSVLG00005010572)	ENSSVLG00005010528	KMT2B (ENSSVLG00005010126)	ZBTB32 (ENSSVLG00005010042)	UPK1A (ENSSVLG00005009967)	ENSSVLG00005009927	ETV2 (ENSSVLG00005009801) #19	RBM42 (ENSSVLG00005009469) #20	HAUS5 (ENSSVLG00005009301) #21	ENSSVLG00005009271	ENSSVLG00005009260	ENSSVLG00005009234	ATP4A (ENSSVLG00005009101) #22	TMEM147 (ENSSVLG00005009024) #23	GAPDHS (ENSSVLG00005008943) #24	ENSSVLG00005025335 #25	ENSSVLG00005025135	KRTDAP (ENSSVLG00005024878) #26	FFAR2 (ENSSVLG00005024856) #27	ENSSVLG00005024839 ##27	ENSSVLG00005024829 ##27	FFAR1 (ENSSVLG00005024814) #28	CD22 (ENSSVLG00005024771) #30	ENSSVLG00005024753	MAG (ENSSVLG00005024672) #31	HAMP (ENSSVLG00005024635) #32	USF2 (ENSSVLG00005024577) #33	LSR (ENSSVLG00005024323) #34