Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00950000185781	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.A.a ##26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163973	ENSGT00940000165113	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A
Glires	ANCESTRAL SPECIES		ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00950000185781	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.A.a ##26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163973	ENSGT00940000165113	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A
Rodentia	ANCESTRAL SPECIES		ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00950000185781	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.A.a ##26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163973	ENSGT00940000165113	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.D.gb #26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a	ENSGT00390000006372
Myomorpha	ANCESTRAL SPECIES	16	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.D.gb #26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a	ENSGT00390000006372
Muroidea	ANCESTRAL SPECIES	9	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.D.gb #26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a	ENSGT00390000006372
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.D.gb #26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870.c	ENSGT00940000162870.d	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a
Murinae	ANCESTRAL SPECIES	11	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.D.gb #26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163654.d	ENSGT00940000163654.c	ENSGT00940000162870.c	ENSGT00940000162870.d	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a
Mus	ANCESTRAL SPECIES	5	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.D.gb #26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163654.d	ENSGT00940000163654.c	ENSGT00940000162870.c	ENSGT00940000162870.d	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a.b
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.D.gb #26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163654.d	ENSGT00940000163654.c	ENSGT00940000162870.c	ENSGT00940000162870.d	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a.b
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.D.gb #26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163654.d	ENSGT00940000163654.c	ENSGT00940000162870.c	ENSGT00940000162870.d	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a.b
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.D.gb #26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163654.d	ENSGT00940000163654.c	ENSGT00940000162870.c	ENSGT00940000162870.d	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a.b
Steppe mouse	MODERN SPECIES	2796	Nhlh1 (ENSMSIG00000007585) #7	Ncstn (ENSMSIG00000007600) #8	Copa (ENSMSIG00000007673) #9	Pex19 (ENSMSIG00000007845) #10	Dcaf8 (ENSMSIG00000007890) #11	Pea15a (ENSMSIG00000007925) #12	Casq1 (ENSMSIG00000007938) #13	Atp1a4 (ENSMSIG00000007957) #14	Atp1a2 (ENSMSIG00000008038) #15	Igsf8 (ENSMSIG00000008092) #16	Kcnj9 (ENSMSIG00000008117) #17	Kcnj10 (ENSMSIG00000008133) #18	Pigm (ENSMSIG00000008141) #19	Slamf9 (ENSMSIG00000008147) #20	Igsf9 (ENSMSIG00000008196) #21	Tagln2 (ENSMSIG00000008348) #22	Cfap45 (ENSMSIG00000008381) #23	Vsig8 (ENSMSIG00000008400) #24	Slamf8 (ENSMSIG00000008459) #25	Fcrl6 (ENSMSIG00000008473) #26
spretus	MODERN SPECIES		Vangl2 (MGP_SPRETEiJ_G0015686)	Nhlh1 (MGP_SPRETEiJ_G0015687) #7	Ncstn (MGP_SPRETEiJ_G0015688) #8	Copa (MGP_SPRETEiJ_G0015689) #9	Pex19 (MGP_SPRETEiJ_G0015690) #10	Dcaf8 (MGP_SPRETEiJ_G0015691) #11	Pea15a (MGP_SPRETEiJ_G0015692) #12	Casq1 (MGP_SPRETEiJ_G0015693) #13	Atp1a4 (MGP_SPRETEiJ_G0015694) #14	Atp1a2 (MGP_SPRETEiJ_G0015696) #15	Kcnj9 (MGP_SPRETEiJ_G0015697) #17	Kcnj10 (MGP_SPRETEiJ_G0015698) #18	Pigm (MGP_SPRETEiJ_G0015699) #19	Slamf9 (MGP_SPRETEiJ_G0015700) #20	Igsf9 (MGP_SPRETEiJ_G0015701) #21	Tagln2 (MGP_SPRETEiJ_G0015702) #22	Cfap45 (MGP_SPRETEiJ_G0015703) #23	Vsig8 (MGP_SPRETEiJ_G0015704) #24	Slamf8 (MGP_SPRETEiJ_G0015705) #25	Fcrl6 (MGP_SPRETEiJ_G0015706) #26	Dusp23 (MGP_SPRETEiJ_G0015707)	Crp (MGP_SPRETEiJ_G0015708)	Apcs (MGP_SPRETEiJ_G0015709)	Or10j5 (MGP_SPRETEiJ_G0015710)	Or10j27 (MGP_SPRETEiJ_G0015711)	Or10j7 (MGP_SPRETEiJ_G0015712)	MGP_SPRETEiJ_G0015713	Or10j3b (MGP_SPRETEiJ_G0015714)	Fcer1a (MGP_SPRETEiJ_G0015715) ##26	MGP_SPRETEiJ_G0015716	Mptx2 (MGP_SPRETEiJ_G0015717)
Mouse	MODERN SPECIES		Nhlh1 (ENSMUSG00000051251) #7	Ncstn (ENSMUSG00000003458) #8	Copa (ENSMUSG00000026553) #9	Pex19 (ENSMUSG00000003464) #10	Dcaf8 (ENSMUSG00000026554) #11	Pea15a (ENSMUSG00000013698) #12	Casq1 (ENSMUSG00000007122) #13	Atp1a4 (ENSMUSG00000007107) #14	Igsf8 (ENSMUSG00000038034) #16	Atp1a2 (ENSMUSG00000007097) #15	Kcnj9 (ENSMUSG00000038026) #17	Kcnj10 (ENSMUSG00000044708) #18	Pigm (ENSMUSG00000050229) #19	Slamf9 (ENSMUSG00000026548) #20	Igsf9 (ENSMUSG00000037995) #21	Tagln2 (ENSMUSG00000026547) #22	Cfap45 (ENSMUSG00000026546) #23	Vsig8 (ENSMUSG00000049598) #24	Slamf8 (ENSMUSG00000053318) #25	Fcrl6 (ENSMUSG00000070504) #26	Dusp23 (ENSMUSG00000026544)	Crp (ENSMUSG00000037942)	Apcs (ENSMUSG00000026542)	Or10j5 (ENSMUSG00000037924)	Or10j27 (ENSMUSG00000062527)	Or10j7 (ENSMUSG00000058981)	Or10j3 (ENSMUSG00000046643)	Or10j3b (ENSMUSG00000049456)	Fcer1a (ENSMUSG00000005339) ##26	Or10j2 (ENSMUSG00000049605)	Mptx2 (ENSMUSG00000079180)
Ryukyu mouse	MODERN SPECIES		Nhlh1 (MGP_CAROLIEiJ_G0014883) #7	Ncstn (MGP_CAROLIEiJ_G0014884) #8	Copa (MGP_CAROLIEiJ_G0014885) #9	Pex19 (MGP_CAROLIEiJ_G0014886) #10	Dcaf8 (MGP_CAROLIEiJ_G0014887) #11	Pea15a (MGP_CAROLIEiJ_G0014888) #12	Casq1 (MGP_CAROLIEiJ_G0014889) #13	Atp1a4 (MGP_CAROLIEiJ_G0014890) #14	Igsf8 (MGP_CAROLIEiJ_G0014891) #16	Atp1a2 (MGP_CAROLIEiJ_G0014892) #15	Kcnj9 (MGP_CAROLIEiJ_G0014893) #17	Kcnj10 (MGP_CAROLIEiJ_G0014894) #18	Pigm (MGP_CAROLIEiJ_G0014895) #19	MGP_CAROLIEiJ_G0014896 #20	Igsf9 (MGP_CAROLIEiJ_G0014897) #21	Tagln2 (MGP_CAROLIEiJ_G0014898) #22	Cfap45 (MGP_CAROLIEiJ_G0014899) #23	Vsig8 (MGP_CAROLIEiJ_G0014900) #24	Slamf8 (MGP_CAROLIEiJ_G0014901) #25	Fcrl6 (MGP_CAROLIEiJ_G0014902) #26	Dusp23 (MGP_CAROLIEiJ_G0014903)	Crp (MGP_CAROLIEiJ_G0014904)	Apcs (MGP_CAROLIEiJ_G0014905)	Or10j5 (MGP_CAROLIEiJ_G0014906)	Or10j27 (MGP_CAROLIEiJ_G0014907)	Or10j7 (MGP_CAROLIEiJ_G0014908)	Or10j3 (MGP_CAROLIEiJ_G0014909)	Or10j3b (MGP_CAROLIEiJ_G0014910)	Fcer1a (MGP_CAROLIEiJ_G0014911) ##26	Or10j2 (MGP_CAROLIEiJ_G0014912)	Ackr1 (MGP_CAROLIEiJ_G0014913)
Shrew mouse	MODERN SPECIES	18	Nhlh1 (MGP_PahariEiJ_G0028120) #7	Ncstn (MGP_PahariEiJ_G0028121) #8	Copa (MGP_PahariEiJ_G0028122) #9	Pex19 (MGP_PahariEiJ_G0028123) #10	Dcaf8 (MGP_PahariEiJ_G0028124) #11	Pea15a (MGP_PahariEiJ_G0028125) #12	Casq1 (MGP_PahariEiJ_G0028126) #13	Atp1a4 (MGP_PahariEiJ_G0028127) #14	Igsf8 (MGP_PahariEiJ_G0028128) #16	Atp1a2 (MGP_PahariEiJ_G0028129) #15	Kcnj9 (MGP_PahariEiJ_G0028130) #17	Kcnj10 (MGP_PahariEiJ_G0028131) #18	Pigm (MGP_PahariEiJ_G0028132) #19	Slamf9 (MGP_PahariEiJ_G0028133) #20	Igsf9 (MGP_PahariEiJ_G0028134) #21	Tagln2 (MGP_PahariEiJ_G0028135) #22	Cfap45 (MGP_PahariEiJ_G0028136) #23	Vsig8 (MGP_PahariEiJ_G0028137) #24	Slamf8 (MGP_PahariEiJ_G0028138) #25	MGP_PahariEiJ_G0028139 #26	Dusp23 (MGP_PahariEiJ_G0028140)	Crp (MGP_PahariEiJ_G0028141)	Apcs (MGP_PahariEiJ_G0028142)	Or10j5 (MGP_PahariEiJ_G0028143)	Or10j27 (MGP_PahariEiJ_G0028145)	Or10j7 (MGP_PahariEiJ_G0028146)	Or10j3b (MGP_PahariEiJ_G0028147)	Or10j2 (MGP_PahariEiJ_G0028148)	MGP_PahariEiJ_G0028149	MGP_PahariEiJ_G0028150	Ackr1 (MGP_PahariEiJ_G0028151)
Rat	MODERN SPECIES	4	Nhlh1 (ENSRNOG00000005166) #7	Ncstn (ENSRNOG00000005355) #8	Copa (ENSRNOG00000006247) #9	LOC102548286 (ENSRNOG00000057116) #10	Dcaf8 (ENSRNOG00000006785) #11	Pea15 (ENSRNOG00000046996) #12	Casq1 (ENSRNOG00000006930) #13	Atp1a4 (ENSRNOG00000032378) #14	Atp1a2 (ENSRNOG00000007290) #15	Igsf8 (ENSRNOG00000007604) #16	Kcnj9 (ENSRNOG00000007645) #17	Kcnj10 (ENSRNOG00000068444) #18	Pigm (ENSRNOG00000007735) #19	Slamf9 (ENSRNOG00000008045) #20	Igsf9 (ENSRNOG00000008054) #21	Tagln2 (ENSRNOG00000008301) #22	Cfap45 (ENSRNOG00000008492) #23	Vsig8 (ENSRNOG00000008668) #24	Slamf8 (ENSRNOG00000008736) #25	Fcrl6 (ENSRNOG00000000055) #26	Dusp23 (ENSRNOG00000022143)	Crp (ENSRNOG00000000053)	LOC108348980 (ENSRNOG00000028939)	Apcs (ENSRNOG00000009086)	Or10j5 (ENSRNOG00000009141)	Or10j7 (ENSRNOG00000064078)	Or10j27 (ENSRNOG00000064146)	Or10j3 (ENSRNOG00000062538)	Or10j3b (ENSRNOG00000067763)	Fcer1a (ENSRNOG00000009177) ##26	Or10j2 (ENSRNOG00000049477)
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.D.gb #26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870.c	ENSGT00940000162870.d	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870.c	ENSGT00940000162870.d	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a	ENSGT00390000006372
Prairie vole	MODERN SPECIES	118	Nhlh1 (ENSMOCG00000003124) #7	Ncstn (ENSMOCG00000003397) #8	Copa (ENSMOCG00000001697) #9	Pex19 (ENSMOCG00000000332) #10	Dcaf8 (ENSMOCG00000014874) #11	Pea15a (ENSMOCG00000013796) #12	Casq1 (ENSMOCG00000003428) #13	Atp1a4 (ENSMOCG00000016552) #14	Atp1a2 (ENSMOCG00000001569) #15	Igsf8 (ENSMOCG00000007929) #16	Kcnj9 (ENSMOCG00000017119) #17	Kcnj10 (ENSMOCG00000015793) #18	Pigm (ENSMOCG00000001955) #19	Slamf9 (ENSMOCG00000014177) #20	Igsf9 (ENSMOCG00000000988) #21	Tagln2 (ENSMOCG00000014146) #22	Cfap45 (ENSMOCG00000008042) #23	Vsig8 (ENSMOCG00000016054) #24	Slamf8 (ENSMOCG00000008354) #25	Dusp23 (ENSMOCG00000021329)	Crp (ENSMOCG00000021079)	Apcs (ENSMOCG00000015189)	Or10j5 (ENSMOCG00000002391)	ENSMOCG00000002640	Fcer1a (ENSMOCG00000017859) ##26	ENSMOCG00000015105	Ackr1 (ENSMOCG00000014680)	Cadm3 (ENSMOCG00000009497)	Aim2 (ENSMOCG00000018788)	ENSMOCG00000019015	ENSMOCG00000014760
Northern American deer mouse	MODERN SPECIES	2	Nhlh1 (ENSPEMG00000003780) #7	Ncstn (ENSPEMG00000012185) #8	ENSPEMG00000010800 #9	Pex19 (ENSPEMG00000011399) #10	Dcaf8 (ENSPEMG00000006936) #11	Pea15a (ENSPEMG00000030852) #12	Casq1 (ENSPEMG00000011466) #13	Atp1a4 (ENSPEMG00000000606) #14	Atp1a2 (ENSPEMG00000013238) #15	Igsf8 (ENSPEMG00000017176) #16	Kcnj9 (ENSPEMG00000014733) #17	Kcnj10 (ENSPEMG00000028152) #18	Pigm (ENSPEMG00000004635) #19	Slamf9 (ENSPEMG00000009321) #20	Igsf9 (ENSPEMG00000011335) #21	Tagln2 (ENSPEMG00000010399) #22	Cfap45 (ENSPEMG00000016692) #23	Vsig8 (ENSPEMG00000009137) #24	Slamf8 (ENSPEMG00000015798) #25	Dusp23 (ENSPEMG00000011195)	Crp (ENSPEMG00000024726)	Apcs (ENSPEMG00000017741)	Or10j5 (ENSPEMG00000001889)	ENSPEMG00000002551	ENSPEMG00000014050	Or10j3 (ENSPEMG00000029514)	Or10j3b (ENSPEMG00000024812)	Fcer1a (ENSPEMG00000016296) ##26	Or10j2 (ENSPEMG00000001739)	ENSPEMG00000013567	Ackr1 (ENSPEMG00000017601)
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.D.gb #26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870.c	ENSGT00940000162870.d	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	44	Klb (ENSCGRG00001018998)	Rfc1 (ENSCGRG00001016960)	Wdr19 (ENSCGRG00001023589)	Klhl5 (ENSCGRG00001010990)	Tmem156 (ENSCGRG00001022810)	Fam114a1 (ENSCGRG00001020236)	Tlr6 (ENSCGRG00001012094)	Tlr1 (ENSCGRG00001012288)	ENSCGRG00001011588	Klf3 (ENSCGRG00001011019)	Tbc1d1 (ENSCGRG00001007939)	Pgm2 (ENSCGRG00001019866)	ENSCGRG00001017215	0610040J01Rik (ENSCGRG00001016782)	Nwd2 (ENSCGRG00001014796)	ENSCGRG00001005701 #22	ENSCGRG00001015981	Dthd1 (ENSCGRG00001007560)	Arap2 (ENSCGRG00001019683)	ENSCGRG00001009672	ENSCGRG00001018983	Pcdh7 (ENSCGRG00001017637)	ENSCGRG00001012415	ENSCGRG00001005160	ENSCGRG00001002941	Stim2 (ENSCGRG00001012517)	ENSCGRG00001004312	Tbc1d19 (ENSCGRG00001021066)	Cckar (ENSCGRG00001015331)	Rbpj (ENSCGRG00001016640)	ENSCGRG00001010832
Chinese hamster chok1gshd	MODERN SPECIES	225	Klrk1 (ENSCGRG00001020940)	ENSCGRG00001020816	Klrc1 (ENSCGRG00001020444)	Klri1 (ENSCGRG00001020039)	Klrh1 (ENSCGRG00001019848)	ENSCGRG00001018036	ENSCGRG00001017743	ENSCGRG00001017367	Styk1 (ENSCGRG00001017006)	Ybx3 (ENSCGRG00001016148)	Tas2r130 (ENSCGRG00001014300)	Tas2r107 (ENSCGRG00001014142)	Tas2r104 (ENSCGRG00001013798)	Tas2r105 (ENSCGRG00001013792)	Tas2r114 (ENSCGRG00001014028)	ENSCGRG00001020475 #22	ENSCGRG00001020364	Tas2r120 (ENSCGRG00001014285)	Tas2r121 (ENSCGRG00001020077)	Tas2r115 (ENSCGRG00001014328)	Tas2r124 (ENSCGRG00001014020)	ENSCGRG00001019916	Tas2r129 (ENSCGRG00001018240)	Tas2r125 (ENSCGRG00001014448)	Tas2r113 (ENSCGRG00001014013)	Tas2r116 (ENSCGRG00001015669)	ENSCGRG00001013989	ENSCGRG00001014151	Tas2r103 (ENSCGRG00001017922)	Tas2r140 (ENSCGRG00001014224)	Smim10l1 (ENSCGRG00001014875)
Chinese hamster chok1gshd	MODERN SPECIES	2	Nhlh1 (ENSCGRG00001002828) #7	Ncstn (ENSCGRG00001011290) #8	Copa (ENSCGRG00001024070) #9	PEX19 (ENSCGRG00001024356) #10	Dcaf8 (ENSCGRG00001005377) #11	PEA15 (ENSCGRG00001024826) #12	Casq1 (ENSCGRG00001022123) #13	Atp1a4 (ENSCGRG00001019614) #14	Atp1a2 (ENSCGRG00001009182) #15	Igsf8 (ENSCGRG00001018298) #16	Kcnj9 (ENSCGRG00001000969) #17	Kcnj10 (ENSCGRG00001003433) #18	Pigm (ENSCGRG00001004342) #19	Slamf9 (ENSCGRG00001018988) #20	Igsf9 (ENSCGRG00001020689) #21	ENSCGRG00001018057 #22	Cfap45 (ENSCGRG00001013630) #23	Vsig8 (ENSCGRG00001023265) #24	Slamf8 (ENSCGRG00001019455) #25	ENSCGRG00001025048 #26	Dusp23 (ENSCGRG00001025037)	Crp (ENSCGRG00001024968)	Apcs (ENSCGRG00001024627)	Or10j5 (ENSCGRG00001002194)	ENSCGRG00001012364	ENSCGRG00001012248	ENSCGRG00001012729	Or10j3 (ENSCGRG00001001033)	Or10j3b (ENSCGRG00001012422)	Fcer1a (ENSCGRG00001011286) ##26	Or10j2 (ENSCGRG00001012095)
Golden Hamster	MODERN SPECIES	697	Nhlh1 (ENSMAUG00000001351) #7	Ncstn (ENSMAUG00000019880) #8	Copa (ENSMAUG00000009587) #9	Pex19 (ENSMAUG00000008866) #10	Dcaf8 (ENSMAUG00000007971) #11	Pea15a (ENSMAUG00000002640) #12	Casq1 (ENSMAUG00000001557) #13	Atp1a4 (ENSMAUG00000013532) #14	Atp1a2 (ENSMAUG00000009483) #15	Igsf8 (ENSMAUG00000005168) #16	Kcnj9 (ENSMAUG00000004618) #17	Kcnj10 (ENSMAUG00000003384) #18	Pigm (ENSMAUG00000002040) #19	Slamf9 (ENSMAUG00000002531) #20	Igsf9 (ENSMAUG00000016697) #21	Tagln2 (ENSMAUG00000015755) #22	Cfap45 (ENSMAUG00000014684) #23	Vsig8 (ENSMAUG00000013550) #24	Slamf8 (ENSMAUG00000013303) #25	Fcrl6 (ENSMAUG00000012715) #26	Dusp23 (ENSMAUG00000012353)	Crp (ENSMAUG00000012308)	Apcs (ENSMAUG00000011083)	Or10j5 (ENSMAUG00000001340)	ENSMAUG00000018501	Fcer1a (ENSMAUG00000016317) ##26	ENSMAUG00000015197	Ackr1 (ENSMAUG00000015131)	Cadm3 (ENSMAUG00000015645)	Aim2 (ENSMAUG00000012690)	ENSMAUG00000012460
Upper Galilee mountains blind mole rat	MODERN SPECIES	1119	ENSNGAG00000009193 ##25	Slamf6 (ENSNGAG00000020830) ##25	Vangl2 (ENSNGAG00000011084)	Nhlh1 (ENSNGAG00000017587) #7	Ncstn (ENSNGAG00000022047) #8	Copa (ENSNGAG00000014690) #9	Pex19 (ENSNGAG00000021061) #10	Dcaf8 (ENSNGAG00000015830) #11	Pea15a (ENSNGAG00000008317) #12	Casq1 (ENSNGAG00000011364) #13	Atp1a2 (ENSNGAG00000018905) #15	Igsf8 (ENSNGAG00000016168) #16	Kcnj9 (ENSNGAG00000020566) #17	Kcnj10 (ENSNGAG00000020981) #18	Igsf9 (ENSNGAG00000014249) #21	Tagln2 (ENSNGAG00000000484) #22	Cfap45 (ENSNGAG00000001181) #23	Vsig8 (ENSNGAG00000008436) #24	Slamf8 (ENSNGAG00000018862) #25	Dusp23 (ENSNGAG00000000743)	Crp (ENSNGAG00000020190)	Fcer1a (ENSNGAG00000013961) ##26	ENSNGAG00000000474	ENSNGAG00000000729	Ackr1 (ENSNGAG00000001707)	Cadm3 (ENSNGAG00000005609)	Aim2 (ENSNGAG00000017033)	ENSNGAG00000019400	ENSNGAG00000011188	Or6k14 (ENSNGAG00000000691)	Spta1 (ENSNGAG00000014572)
Lesser Egyptian jerboa	MODERN SPECIES	199	Nhlh1 (ENSJJAG00000012911) #7	Ncstn (ENSJJAG00000020273) #8	Copa (ENSJJAG00000023590) #9	Pex19 (ENSJJAG00000022158) #10	Dcaf8 (ENSJJAG00000018554) #11	ENSJJAG00000022629 #12	Casq1 (ENSJJAG00000022031) #13	Atp1a4 (ENSJJAG00000018895) #14	Atp1a2 (ENSJJAG00000017505) #15	Igsf8 (ENSJJAG00000009719) #16	Kcnj9 (ENSJJAG00000000650) #17	Kcnj10 (ENSJJAG00000000220) #18	Pigm (ENSJJAG00000013216) #19	Slamf9 (ENSJJAG00000017960) #20	Igsf9 (ENSJJAG00000016571) #21	Tagln2 (ENSJJAG00000013181) #22	Cfap45 (ENSJJAG00000012021) #23	Vsig8 (ENSJJAG00000011307) #24	Slamf8 (ENSJJAG00000010665) #25	Dusp23 (ENSJJAG00000009910)	Crp (ENSJJAG00000003997)	Apcs (ENSJJAG00000013862)	ENSJJAG00000013735	Fcer1a (ENSJJAG00000003143) ##26	Ackr1 (ENSJJAG00000022885)	Cadm3 (ENSJJAG00000022014)	Aim2 (ENSJJAG00000019224)	ENSJJAG00000015438	Spta1 (ENSJJAG00000006211)	ENSJJAG00000000475	Fmn2 (ENSJJAG00000021282)
Kangaroo rat	MODERN SPECIES	450	Nhlh1 (ENSDORG00000003184) #7	Ncstn (ENSDORG00000003182) #8	Copa (ENSDORG00000003178) #9	Pex19 (ENSDORG00000003177) #10	Dcaf8 (ENSDORG00000025872) #11	Pea15a (ENSDORG00000025879) #12	Casq1 (ENSDORG00000013062) #13	ENSDORG00000026888 #14	ENSDORG00000023846	Atp1a2 (ENSDORG00000025124) #15	Igsf8 (ENSDORG00000007975) #16	Kcnj9 (ENSDORG00000026272) #17	Kcnj10 (ENSDORG00000011681) #18	Pigm (ENSDORG00000011680) #19	Igsf9 (ENSDORG00000010846) #21	Tagln2 (ENSDORG00000010844) #22	Cfap45 (ENSDORG00000010843) #23	Vsig8 (ENSDORG00000009694) #24	Slamf8 (ENSDORG00000003126) #25	Dusp23 (ENSDORG00000025635)	Crp (ENSDORG00000003120)	Apcs (ENSDORG00000005557)	ENSDORG00000008016	ENSDORG00000026308 ##26	ENSDORG00000006655	Ackr1 (ENSDORG00000007815)	Cadm3 (ENSDORG00000007812)	ENSDORG00000025844	Spta1 (ENSDORG00000016657)	ENSDORG00000023576	ENSDORG00000013579
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00950000185781	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.A.a ##26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163973	ENSGT00940000165113	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.A.a ##26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000165113	ENSGT00940000163968	ENSGT00940000162870.e.a	ENSGT00940000163654	ENSGT00940000162870.e.b	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	20	NHLH1 (ENSHGLG00000020397) #7	NCSTN (ENSHGLG00000007191) #8	COPA (ENSHGLG00000011307) #9	PEX19 (ENSHGLG00000006365) #10	DCAF8 (ENSHGLG00000009593) #11	PEA15 (ENSHGLG00000049375) #12	CASQ1 (ENSHGLG00000036911) #13	ATP1A4 (ENSHGLG00000018340) #14	ATP1A2 (ENSHGLG00000015210) #15	IGSF8 (ENSHGLG00000017599) #16	KCNJ9 (ENSHGLG00000015357) #17	KCNJ10 (ENSHGLG00000035959) #18	PIGM (ENSHGLG00000020908) #19	SLAMF9 (ENSHGLG00000014754) #20	IGSF9 (ENSHGLG00000014869) #21	ENSHGLG00000006396 #22	CFAP45 (ENSHGLG00000007235) #23	VSIG8 (ENSHGLG00000008875) #24	SLAMF8 (ENSHGLG00000041257) #25	DUSP23 (ENSHGLG00000037025)	ENSHGLG00000047194	CRP (ENSHGLG00000015003)	APCS (ENSHGLG00000047260)	OR10J4 (ENSHGLG00000020816)	ENSHGLG00000040096	ENSHGLG00000043592	FCER1A (ENSHGLG00000007498) ##26	ENSHGLG00000020531	ENSHGLG00000010350	ACKR1 (ENSHGLG00000047411)	CADM3 (ENSHGLG00000006499)
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000008586	PRSS51 (ENSHGLG00000005119)	PRSS55 (ENSHGLG00000005245)	ENSHGLG00000006715	SOX7 (ENSHGLG00000007410)	PINX1 (ENSHGLG00000008063)	XKR6 (ENSHGLG00000008722)	MTMR9 (ENSHGLG00000013783)	ENSHGLG00000013747	FAM167A (ENSHGLG00000015619)	BLK (ENSHGLG00000049043)	GATA4 (ENSHGLG00000016492)	NEIL2 (ENSHGLG00000009044)	FDFT1 (ENSHGLG00000050864)	CTSB (ENSHGLG00000011824)	ENSHGLG00000012478 #22	DEFB136 (ENSHGLG00000018411)	ENSHGLG00000050365	ENSHGLG00000043011	ENSHGLG00000018999	ENSHGLG00000003073	ENSHGLG00000003492	ENSHGLG00000041229	ARHGEF10 (ENSHGLG00000003965)	KBTBD11 (ENSHGLG00000035008)	MYOM2 (ENSHGLG00000000341)	ENSHGLG00000049125	CSMD1 (ENSHGLG00000000508)	ENSHGLG00000048727	ANGPT2 (ENSHGLG00000002482)	ENSHGLG00000048261
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000044802	ENSHGLG00000019576	ENSHGLG00000003222	SIAH1 (ENSHGLG00000003142)	ENSHGLG00000003081	ENSHGLG00000048075	ENSHGLG00000003031	ENSHGLG00000039002	ENSHGLG00000047723	ENSHGLG00000048126	ENSHGLG00000012004	ENSHGLG00000032846	PHKB (ENSHGLG00000002597)	ITFG1 (ENSHGLG00000002469)	NETO2 (ENSHGLG00000002342)	ENSHGLG00000002300 #22	ENSHGLG00000002271	ENSHGLG00000002235	ENSHGLG00000050778	ENSHGLG00000039654	ENSHGLG00000002105	ENSHGLG00000049077	ENSHGLG00000041565	ENSHGLG00000002081	ENSHGLG00000045542	ENSHGLG00000009681	MYLK3 (ENSHGLG00000002008)	ORC6 (ENSHGLG00000040263)	ENSHGLG00000001863	SHCBP1 (ENSHGLG00000049778)	ENSHGLG00000013973
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.A.a ##26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000165113	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870.e.b	ENSGT00940000162870.e.a	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000162870.e.a	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT01100000263515.a.b.a.b.b.h.a.a	ENSGT00390000006372	ENSGT00940000159779	ENSGT00390000013296.a.a	ENSGT00390000018908.a.a	ENSGT00940000158895.c.a	ENSGT00940000158895.c.b
Long-tailed chinchilla	MODERN SPECIES	175	NHLH1 (ENSCLAG00000016448) #7	NCSTN (ENSCLAG00000016809) #8	COPA (ENSCLAG00000017268) #9	PEX19 (ENSCLAG00000017075) #10	DCAF8 (ENSCLAG00000014765) #11	PEA15 (ENSCLAG00000016388) #12	CASQ1 (ENSCLAG00000016275) #13	ATP1A4 (ENSCLAG00000012810) #14	ATP1A2 (ENSCLAG00000012804) #15	IGSF8 (ENSCLAG00000011758) #16	KCNJ9 (ENSCLAG00000012616) #17	KCNJ10 (ENSCLAG00000017311) #18	PIGM (ENSCLAG00000017954) #19	SLAMF9 (ENSCLAG00000014897) #20	IGSF9 (ENSCLAG00000013469) #21	TAGLN2 (ENSCLAG00000015785) #22	CFAP45 (ENSCLAG00000013119) #23	VSIG8 (ENSCLAG00000015894) #24	SLAMF8 (ENSCLAG00000014996) #25	DUSP23 (ENSCLAG00000013049)	APCS (ENSCLAG00000013265)	OR10J3 (ENSCLAG00000017924)	FCER1A (ENSCLAG00000013176) ##26	ENSCLAG00000017841	ENSCLAG00000013233	ACKR1 (ENSCLAG00000012793)	CADM3 (ENSCLAG00000011984)	ENSCLAG00000011827	ENSCLAG00000018025	OR6N2 (ENSCLAG00000017826)	OR6N1 (ENSCLAG00000017922)
Degu	MODERN SPECIES	76										ENSODEG00000013134	DDC (ENSODEG00000016024)	IKZF1 (ENSODEG00000013105)	SPATA48 (ENSODEG00000013559)	ZPBP (ENSODEG00000013341)	VWC2 (ENSODEG00000012983)	ENSODEG00000020149 #22	ENSODEG00000013708	ENSODEG00000013178	ENSODEG00000013351	ENSODEG00000014180	C7orf57 (ENSODEG00000013514)	SUN3 (ENSODEG00000013353)	HUS1 (ENSODEG00000015375)	ENSODEG00000013912	ENSODEG00000014174	IGFBP3 (ENSODEG00000013223)	IGFBP1 (ENSODEG00000013291)	ENSODEG00000013507	ENSODEG00000013126	RAMP3 (ENSODEG00000013789)	TBRG4 (ENSODEG00000013538)
Guinea pig	MODERN SPECIES	56	NHLH1 (ENSCPOG00000021596) #7	NCSTN (ENSCPOG00000014923) #8	COPA (ENSCPOG00000014917) #9	PEX19 (ENSCPOG00000014916) #10	DCAF8 (ENSCPOG00000014915) #11	PEA15 (ENSCPOG00000032455) #12	CASQ1 (ENSCPOG00000014914) #13	ATP1A4 (ENSCPOG00000032779) #14	ATP1A2 (ENSCPOG00000014903) #15	IGSF8 (ENSCPOG00000024002) #16	KCNJ9 (ENSCPOG00000023593) #17	KCNJ10 (ENSCPOG00000039801) #18	PIGM (ENSCPOG00000003787) #19	SLAMF9 (ENSCPOG00000007992) #20	IGSF9 (ENSCPOG00000004460) #21	TAGLN2 (ENSCPOG00000027416) #22	CFAP45 (ENSCPOG00000004457) #23	VSIG8 (ENSCPOG00000003207) #24	SLAMF8 (ENSCPOG00000036904) #25	ENSCPOG00000020521 ##26	DUSP23 (ENSCPOG00000034085)	CRP (ENSCPOG00000013154)	APCS (ENSCPOG00000009766)	OR10J4 (ENSCPOG00000025720)	ENSCPOG00000023288	ENSCPOG00000032628	OR10J3 (ENSCPOG00000037408)	ENSCPOG00000006414	ENSCPOG00000026658	ACKR1 (ENSCPOG00000024213)	CADM3 (ENSCPOG00000010800)
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00950000185781	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.A.a ##26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163973	ENSGT00940000165113	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A
Marmotini	ANCESTRAL SPECIES	65	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00950000185781	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.A.a ##26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163973	ENSGT00940000165113	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A
Marmotini_b	ANCESTRAL SPECIES	83	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00950000185781	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.A.a ##26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163973	ENSGT00940000165113	ENSGT00940000163968	ENSGT00940000163654	ENSGT00940000162870	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A
Squirrel	MODERN SPECIES	340	NHLH1 (ENSSTOG00000027988) #7	NCSTN (ENSSTOG00000008815) #8	COPA (ENSSTOG00000008757) #9	PEX19 (ENSSTOG00000008743) #10	DCAF8 (ENSSTOG00000007593) #11	PEA15 (ENSSTOG00000007575) #12	CASQ1 (ENSSTOG00000027089) #13	ATP1A4 (ENSSTOG00000007516) #14	ATP1A2 (ENSSTOG00000007480) #15	IGSF8 (ENSSTOG00000025797) #16	KCNJ9 (ENSSTOG00000022007) #17	KCNJ10 (ENSSTOG00000014095) #18	PIGM (ENSSTOG00000021767) #19	SLAMF9 (ENSSTOG00000007452) #20	IGSF9 (ENSSTOG00000027707) #21	TAGLN2 (ENSSTOG00000028012) #22	CFAP45 (ENSSTOG00000007432) #23	VSIG8 (ENSSTOG00000007410) #24	SLAMF8 (ENSSTOG00000007395) #25	CRP (ENSSTOG00000024783)	APCS (ENSSTOG00000022183)	OR10J5 (ENSSTOG00000004580)	OR10J1 (ENSSTOG00000004574)	OR10J4 (ENSSTOG00000021702)	OR10J3 (ENSSTOG00000004564)	ENSSTOG00000014023 ##26	ENSSTOG00000004550	ENSSTOG00000033220	ACKR1 (ENSSTOG00000032562)	CADM3 (ENSSTOG00000025214)	AIM2 (ENSSTOG00000008132)
Arctic ground squirrel	MODERN SPECIES	374	NHLH1 (ENSUPAG00010011320) #7	NCSTN (ENSUPAG00010011309) #8	COPA (ENSUPAG00010011242) #9	PEX19 (ENSUPAG00010011225) #10	DCAF8 (ENSUPAG00010011203) #11	ENSUPAG00010011200	PEA15 (ENSUPAG00010011194) #12	CASQ1 (ENSUPAG00010011189) #13	ATP1A4 (ENSUPAG00010011137) #14	IGSF8 (ENSUPAG00010011130) #16	KCNJ9 (ENSUPAG00010011126) #17	KCNJ10 (ENSUPAG00010011125) #18	PIGM (ENSUPAG00010011124) #19	SLAMF9 (ENSUPAG00010011119) #20	IGSF9 (ENSUPAG00010011102) #21	TAGLN2 (ENSUPAG00010011095) #22	CFAP45 (ENSUPAG00010011087) #23	VSIG8 (ENSUPAG00010011083) #24	SLAMF8 (ENSUPAG00010011080) #25	ENSUPAG00010011076 ##26	DUSP23 (ENSUPAG00010011070)	CRP (ENSUPAG00010011065)	APCS (ENSUPAG00010011064)	OR10J5 (ENSUPAG00010011055)	OR10J1 (ENSUPAG00010011051)	OR10J4 (ENSUPAG00010011048)	ENSUPAG00010011042	ENSUPAG00010011037	OR10J3 (ENSUPAG00010011032)	FCER1A (ENSUPAG00010011012) ##26	ENSUPAG00010011002
Alpin marmot	MODERN SPECIES	29	NHLH1 (ENSMMMG00000022244) #7	NCSTN (ENSMMMG00000022245) #8	COPA (ENSMMMG00000022255) #9	PEX19 (ENSMMMG00000022272) #10	DCAF8 (ENSMMMG00000022285) #11	PEA15 (ENSMMMG00000022310) #12	CASQ1 (ENSMMMG00000022314) #13	ENSMMMG00000022329 #14	ATP1A2 (ENSMMMG00000022340) #15	IGSF8 (ENSMMMG00000022358) #16	KCNJ9 (ENSMMMG00000022367) #17	KCNJ10 (ENSMMMG00000022374) #18	PIGM (ENSMMMG00000022376) #19	SLAMF9 (ENSMMMG00000022379) #20	IGSF9 (ENSMMMG00000022380) #21	TAGLN2 (ENSMMMG00000022397) #22	CFAP45 (ENSMMMG00000022400) #23	VSIG8 (ENSMMMG00000022406) #24	SLAMF8 (ENSMMMG00000022412) #25	ENSMMMG00000022417 ##26	DUSP23 (ENSMMMG00000022422)	CRP (ENSMMMG00000022433)	APCS (ENSMMMG00000022435)	OR10J5 (ENSMMMG00000022442)	OR10J1 (ENSMMMG00000022465)	OR10J4 (ENSMMMG00000022466)	ENSMMMG00000022473	ENSMMMG00000022475	OR10J3 (ENSMMMG00000022477)	FCER1A (ENSMMMG00000022479) ##26	ENSMMMG00000022481
Eurasian red squirrel	MODERN SPECIES		VANGL2 (ENSSVLG00005008513)	NHLH1 (ENSSVLG00005008496) #7	NCSTN (ENSSVLG00005008466) #8	COPA (ENSSVLG00005008406) #9	PEX19 (ENSSVLG00005008343) #10	DCAF8 (ENSSVLG00005008308) #11	ENSSVLG00005008261 #12	CASQ1 (ENSSVLG00005008157) #13	ATP1A4 (ENSSVLG00005008010) #14	ATP1A2 (ENSSVLG00005007734) #15	IGSF8 (ENSSVLG00005007653) #16	KCNJ9 (ENSSVLG00005007621) #17	ENSSVLG00005007587 #18	SLAMF9 (ENSSVLG00005007532) #20	IGSF9 (ENSSVLG00005007334) #21	TAGLN2 (ENSSVLG00005007297) #22	CFAP45 (ENSSVLG00005007226) #23	ENSSVLG00005007193 #25	VSIG8 (ENSSVLG00005007137) #24	ENSSVLG00005007083 #25	DUSP23 (ENSSVLG00005007049)	CRP (ENSSVLG00005007022)	APCS (ENSSVLG00005006996)	OR10J5 (ENSSVLG00005006978)	OR10J1 (ENSSVLG00005006957)	OR10J4 (ENSSVLG00005006948)	ENSSVLG00005006925	ENSSVLG00005006907	OR10J3 (ENSSVLG00005006899)	FCER1A (ENSSVLG00005006869) ##26	ENSSVLG00005006859
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.A.a ##26	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.b	ENSGT01100000263515.a.b.a.b.b.h.a.b	ENSGT00940000159272.B	ENSGT00940000163973	ENSGT00940000165113	ENSGT00940000163968	ENSGT00940000162870	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A	ENSGT00940000159779
Rabbit	MODERN SPECIES	4	NCSTN (ENSOCUG00000014503) #8	COPA (ENSOCUG00000014479) #9	PEX19 (ENSOCUG00000014473) #10	DCAF8 (ENSOCUG00000017692) #11	PEA15 (ENSOCUG00000017688) #12	CASQ1 (ENSOCUG00000009959) #13	ATP1A4 (ENSOCUG00000029185) #14	ATP1A2 (ENSOCUG00000017667) #15	IGSF8 (ENSOCUG00000023058) #16	KCNJ9 (ENSOCUG00000038517) #17	KCNJ10 (ENSOCUG00000011928) #18	PIGM (ENSOCUG00000015291) #19	ENSOCUG00000027503	SLAMF9 (ENSOCUG00000002366) #20	IGSF9 (ENSOCUG00000002356) #21	TAGLN2 (ENSOCUG00000022296) #22	CFAP45 (ENSOCUG00000002349) #23	VSIG8 (ENSOCUG00000002342) #24	SLAMF8 (ENSOCUG00000002338) #25	ENSOCUG00000021578 ##26	DUSP23 (ENSOCUG00000015831)	CRP (ENSOCUG00000004702)	APCS (ENSOCUG00000014365)	OR10J5 (ENSOCUG00000011962)	ENSOCUG00000021322	OR10J1 (ENSOCUG00000000350)	OR10J4 (ENSOCUG00000021643)	ENSOCUG00000033994	OR10J3 (ENSOCUG00000015476)	FCER1A (ENSOCUG00000022947) ##26	ENSOCUG00000031386
Pika	MODERN SPECIES	1173						PEX19 (ENSOPRG00000011989) #10	DCAF8 (ENSOPRG00000011971) #11	PEA15 (ENSOPRG00000011962) #12	CASQ1 (ENSOPRG00000011935) #13	ATP1A4 (ENSOPRG00000011893) #14	ENSOPRG00000011853 #15	IGSF8 (ENSOPRG00000011837) #16	KCNJ9 (ENSOPRG00000011834) #17	SLAMF9 (ENSOPRG00000011806) #20	IGSF9 (ENSOPRG00000011773) #21	TAGLN2 (ENSOPRG00000018989) #22	CFAP45 (ENSOPRG00000011757) #23	VSIG8 (ENSOPRG00000011747) #24	SLAMF8 (ENSOPRG00000011737) #25	ENSOPRG00000011731	ENSOPRG00000011686	DUSP23 (ENSOPRG00000011681)	CRP (ENSOPRG00000011664)