Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT01050000244808.A.a #26	ENSGT00940000161329 #27	ENSGT01100000263515.a.b.a.b.b.h.b #28	ENSGT01100000263515.a.b.a.b.b.h.a.b #29	ENSGT00940000165113 #30	ENSGT00940000163968 #31	ENSGT00940000163654 #32	ENSGT00940000162870.e.b #33	ENSGT00940000162870.e.a ##33	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A #34	ENSGT01100000263515.a.b.a.b.b.h.a.a #35
Guinea pig	MODERN SPECIES	56	NHLH1 (ENSCPOG00000021596) #7	NCSTN (ENSCPOG00000014923) #8	COPA (ENSCPOG00000014917) #9	PEX19 (ENSCPOG00000014916) #10	DCAF8 (ENSCPOG00000014915) #11	PEA15 (ENSCPOG00000032455) #12	CASQ1 (ENSCPOG00000014914) #13	ATP1A4 (ENSCPOG00000032779) #14	ATP1A2 (ENSCPOG00000014903) #15	IGSF8 (ENSCPOG00000024002) #16	KCNJ9 (ENSCPOG00000023593) #17	KCNJ10 (ENSCPOG00000039801) #18	PIGM (ENSCPOG00000003787) #19	SLAMF9 (ENSCPOG00000007992) #20	IGSF9 (ENSCPOG00000004460) #21	TAGLN2 (ENSCPOG00000027416) #22	CFAP45 (ENSCPOG00000004457) #23	VSIG8 (ENSCPOG00000003207) #24	SLAMF8 (ENSCPOG00000036904) #25	ENSCPOG00000020521 #26	DUSP23 (ENSCPOG00000034085) #27	CRP (ENSCPOG00000013154) #28	APCS (ENSCPOG00000009766) #29	OR10J4 (ENSCPOG00000025720) #30	ENSCPOG00000023288 #31	ENSCPOG00000032628 #32	OR10J3 (ENSCPOG00000037408) #33	ENSCPOG00000006414 #34	ENSCPOG00000026658 #35	ACKR1 (ENSCPOG00000024213) #36	CADM3 (ENSCPOG00000010800) #37
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00940000162622 #7	ENSGT00390000014633 #8	ENSGT00940000155451 #9	ENSGT00390000010993 #10	ENSGT00950000182900.D.d.a #11	ENSGT00390000000230 #12	ENSGT00390000019377.a #13	ENSGT00940000162378 #14	ENSGT00940000159936 #15	ENSGT00940000161314 #16	ENSGT01080000257365.b.a.b.b #17	ENSGT00990000203615.b.a.a.a.a #18	ENSGT00390000017728 #19	ENSGT01030000234540.B.a.a.a.b.a.b #20	ENSGT00940000160444 #21	ENSGT00940000158886 #22	ENSGT00730000111174 #23	ENSGT00940000161712 #24	ENSGT01030000234540.C #25	ENSGT00940000161329 #27	ENSGT01100000263515.a.b.a.b.b.h.a.b #29	ENSGT00940000162870.e.a ##33	ENSGT01050000244808.A.b.a.b ##26	ENSGT00940000159272.A #34	ENSGT01100000263515.a.b.a.b.b.h.a.a #35	ENSGT00390000006372 #36	ENSGT00940000159779 #37	ENSGT00390000013296.a.a	ENSGT00390000018908.a.a	ENSGT00940000158895.c.a	ENSGT00940000158895.c.b
Long-tailed chinchilla	MODERN SPECIES	175	NHLH1 (ENSCLAG00000016448) #7	NCSTN (ENSCLAG00000016809) #8	COPA (ENSCLAG00000017268) #9	PEX19 (ENSCLAG00000017075) #10	DCAF8 (ENSCLAG00000014765) #11	PEA15 (ENSCLAG00000016388) #12	CASQ1 (ENSCLAG00000016275) #13	ATP1A4 (ENSCLAG00000012810) #14	ATP1A2 (ENSCLAG00000012804) #15	IGSF8 (ENSCLAG00000011758) #16	KCNJ9 (ENSCLAG00000012616) #17	KCNJ10 (ENSCLAG00000017311) #18	PIGM (ENSCLAG00000017954) #19	SLAMF9 (ENSCLAG00000014897) #20	IGSF9 (ENSCLAG00000013469) #21	TAGLN2 (ENSCLAG00000015785) #22	CFAP45 (ENSCLAG00000013119) #23	VSIG8 (ENSCLAG00000015894) #24	SLAMF8 (ENSCLAG00000014996) #25	DUSP23 (ENSCLAG00000013049) #27	APCS (ENSCLAG00000013265) #29	OR10J3 (ENSCLAG00000017924) ##33	FCER1A (ENSCLAG00000013176) ##26	ENSCLAG00000017841 #34	ENSCLAG00000013233 #35	ACKR1 (ENSCLAG00000012793) #36	CADM3 (ENSCLAG00000011984) #37	ENSCLAG00000011827	ENSCLAG00000018025	OR6N2 (ENSCLAG00000017826)	OR6N1 (ENSCLAG00000017922)
Degu	MODERN SPECIES	76										ENSODEG00000013134	DDC (ENSODEG00000016024)	IKZF1 (ENSODEG00000013105)	SPATA48 (ENSODEG00000013559)	ZPBP (ENSODEG00000013341)	VWC2 (ENSODEG00000012983)	ENSODEG00000020149 #22	ENSODEG00000013708	ENSODEG00000013178	ENSODEG00000013351	ENSODEG00000014180	C7orf57 (ENSODEG00000013514)	SUN3 (ENSODEG00000013353)	HUS1 (ENSODEG00000015375)	ENSODEG00000013912	ENSODEG00000014174	IGFBP3 (ENSODEG00000013223)	IGFBP1 (ENSODEG00000013291)	ENSODEG00000013507	ENSODEG00000013126	RAMP3 (ENSODEG00000013789)	TBRG4 (ENSODEG00000013538)